Citrus Sinensis ID: 012866

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
Protein Sequence
MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF
Secondary Structure (PSIPRED)
cEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHcccccEEEEEccccccccccHHcHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHccccEEEEEccccccHHHHHcccccccccccccccccccccccHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHHHcccccEEEEcccccHHHHHHHcccccccEEEEccccHHHHHHHHHcccHHHHHcccccEEEEcccccEEEEEcccHHHHHHHHHHHHHHcccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHcccccccccccccccccccEEEEccccccccccccccccccccccccEEEEEcccccccHHHHHHHHcccEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEEEEcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHccccccEEEccccHHHHHHHHHHccHHHHHHccEEEEEEccccccEEccccHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHcccccccHHHHHHcccccccEEEEEEccccccccccccccHHHcccccEEEEEEEcccccHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mlcnvsrpkwagglyegdEHKRLEALHLAEDLGADYVDFELKVASNILgkqysshqsgtrfivscnldcetpseedLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGErglvsqllspkfngalvygslkgtpvlglptveSLRQTYKVEHINADTKVFgliskpvghskgpilhnptfrhvnyngiyvPMFVDDLKKFFstysspdfagfsvgfpyKEAVMKFCDEVHPLAQAIAAVNTIirrpsdgkligyntdcEASITAIEDAIKergykngtasfgsplAGRMFVLAGAGGAGRALAfgaksrgarVVIFDIDFERAKSLASdvmgaarpfedilnfqpekgailanatplgmhpntdrvpvseetLRDYQLVFDavytprktrlLKDAEAAGAIIVSGVEMFLRQAIGQfnlftgkeapKEFMREIVLAKF
Flexible Loop (DISEMBL)
mlcnvsrpkwagglyeGDEHKRLEALHLAEDLGADYVDFELKVASNILGkqysshqsgTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILAnatplgmhpNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNlftgkeapKEFMREIVLAKF
Low Complexity Region (SEG)
MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLagaggagralafgaKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF
Disordered region (IsUnstruct)
********KWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM******VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV****
Disordered Region (DISOPRED)
MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF
Disordered Region (DISEMBL)
MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF
Disordered Region (DISPRO)
MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE***********SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	454	2.2.26 [Sep-21-2011]
Q9SQT8	603	Bifunctional 3-dehydroqui	yes	no	0.977	0.736	0.520	1e-118
Q8TZ24	290	Shikimate dehydrogenase O	yes	no	0.588	0.920	0.388	2e-40
Q818D0	277	Shikimate dehydrogenase O	yes	no	0.585	0.960	0.322	4e-39
B7HCW1	277	Shikimate dehydrogenase O	yes	no	0.585	0.960	0.322	4e-39
A9VHW1	277	Shikimate dehydrogenase O	yes	no	0.588	0.963	0.331	7e-39
B9IYA1	277	Shikimate dehydrogenase O	yes	no	0.585	0.960	0.322	2e-38
B7HPN3	277	Shikimate dehydrogenase O	yes	no	0.585	0.960	0.322	2e-38
B7IYI7	277	Shikimate dehydrogenase O	yes	no	0.585	0.960	0.319	2e-37
Q6HDI8	277	Shikimate dehydrogenase O	yes	no	0.581	0.953	0.324	2e-37
B7JNW6	277	Shikimate dehydrogenase O	yes	no	0.585	0.960	0.322	5e-37

>sp|Q9SQT8|DHQSD_ARATH Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=EMB3004 PE=1 SV=1

 Score =  425 bits (1093), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 232/446 (52%), Positives = 304/446 (68%), Gaps = 2/446 (0%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
           RPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + IVS +
Sbjct: 155 RPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSH 214

Query: 67  LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
               TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   +GER
Sbjct: 215 NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGER 274

Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           GL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I KPV 
Sbjct: 275 GLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPVS 334

Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++ CDE
Sbjct: 335 HSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDE 394

Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           V PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +   S  SPLA +
Sbjct: 395 VDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASK 454

Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
             V+ GAGGAG+ALA+GAK +GA+VVI +  +ERA  LA  + G A    D+ N+ PE G
Sbjct: 455 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDG 514

Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
            +LAN T +GM PN +  P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VSG EM
Sbjct: 515 MVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEM 574

Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIV 450
           F+RQA  QF +FTG  APKE   +I+
Sbjct: 575 FVRQAYEQFEIFTGLPAPKELYWQIM 600

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 5

>sp|Q8TZ24|AROE_METKA Shikimate dehydrogenase OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) GN=aroE PE=3 SV=1

 Score =  167 bits (423), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/296 (38%), Positives = 163/296 (55%), Gaps = 29/296 (9%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFA-- 226
           ++A+T V GLI  PV HS  P +HN  F+ +  N +Y+   V   +   +   + D    
Sbjct: 7   VDAETNVVGLIGHPVEHSLSPAMHNAAFKELGLNYVYLAFDVPPERLEGAVRGAADLGIV 66

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P+KEAVM+ CDE+   A+ I AVNT+  R S GK+ G+NTD E  + A+    +
Sbjct: 67  GLNVTIPHKEAVMELCDELDRDAELIGAVNTV--RFSRGKIEGFNTDGEGFLRAL----R 120

Query: 287 ERGY--KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLA 343
           E  Y    GT S          V+ GAGGA RA++F   + GA  +VI +   +RA+ LA
Sbjct: 121 EETYFDPRGTKS----------VILGAGGAARAVSFKLATEGADEIVIANRTVDRAERLA 170

Query: 344 SD----VMGAARPFE---DILNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDYQLV 395
            +    V   AR      D +  +     +L +ATP+GM+PN D  P V+ + + +  +V
Sbjct: 171 EELKEKVGVKARAIGLDGDEIERELRDADLLVDATPVGMYPNEDEPPLVTADQMHEDLIV 230

Query: 396 FDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 451
            D VY P +TRLL++AE AGA  VSGV M + Q    F L+TG+EAP E MRE VL
Sbjct: 231 NDLVYNPPRTRLLEEAEKAGATPVSGVGMLVYQGALAFELWTGEEAPVEVMREAVL 286

Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 100938) (taxid: 190192)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q818D0|AROE_BACCR Shikimate dehydrogenase OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=aroE PE=3 SV=1

 Score =  162 bits (411), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 157/288 (54%), Gaps = 22/288 (7%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
           +++G+I  P+GHS  P++HN  F H+N +  Y    V++  L +      +   +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVEEELLGEAVRGLKALGISGFNVT 62

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K A+M++ DE+ PLA+ I AVNT++ +  DG+LIGYNTD    + A++    E    
Sbjct: 63  TPHKVAIMEYLDEIDPLARKIGAVNTVVHK--DGRLIGYNTDGIGFVRALQSISNE---- 116

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDFERAKSL----ASDV 346
                   PL G+  +L G+GGA RA+ F     G + + + +   ++AK L     +DV
Sbjct: 117 --------PLQGKRILLLGSGGASRAIYFSLADVGVKEIDVANRTVDKAKELIAARTADV 168

Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
              A   E     Q     I+   T +GMHP+ +  P+   +L+   +V D +Y P +T+
Sbjct: 169 NSVALSLEKATEEQGNYDIII-QTTTIGMHPHVEHTPLQICSLKKGTIVSDIIYNPFETK 227

Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           +L +A+  GAII +G++MF+ Q    F ++TG+    E M+++V+ K 
Sbjct: 228 ILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGRTPNIERMKQLVIEKL 275

Bacillus cereus (strain ATCC 14579 / DSM 31) (taxid: 226900)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B7HCW1|AROE_BACC4 Shikimate dehydrogenase OS=Bacillus cereus (strain B4264) GN=aroE PE=3 SV=1

 Score =  162 bits (411), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 157/288 (54%), Gaps = 22/288 (7%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
           +++G+I  P+GHS  P++HN  F H+N +  Y    V++  L +      +   +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVEEELLGEAVRGLKALGISGFNVT 62

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K A+M++ DE+ PLA+ I AVNT++ +  DG+LIGYNTD    + A++    E    
Sbjct: 63  TPHKVAIMEYLDEIDPLARKIGAVNTVVHK--DGRLIGYNTDGIGFVRALQSISNE---- 116

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDFERAKSL----ASDV 346
                   PL G+  +L G+GGA RA+ F     G + + + +   ++AK L     +DV
Sbjct: 117 --------PLQGKRILLLGSGGASRAIYFSLADVGVKEIDVANRTVDKAKELIAARTADV 168

Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
              A   E     Q     I+   T +GMHP+ +  P+   +L+   +V D +Y P +T+
Sbjct: 169 NSVALSLEKATEEQGNYDIII-QTTTIGMHPHVEHTPLQICSLKKGTIVSDIIYNPFETK 227

Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           +L +A+  GAII +G++MF+ Q    F ++TG+    E M+++V+ K 
Sbjct: 228 ILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGRTPNIERMKQLVIEKL 275

Bacillus cereus (strain B4264) (taxid: 405532)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|A9VHW1|AROE_BACWK Shikimate dehydrogenase OS=Bacillus weihenstephanensis (strain KBAB4) GN=aroE PE=3 SV=1

 Score =  162 bits (409), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 157/287 (54%), Gaps = 20/287 (6%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
           +++G+I  P+GHS  P++HN  F H+N +  Y+   V++  L +      +   +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYLAFLVEEEALGEAVKGLKALGISGFNVT 62

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K A+M++ DE+ PLA+ I AVNT++ R  DGKLIGYNTD    + A++ +I E    
Sbjct: 63  TPHKVAIMEYLDEIAPLARQIGAVNTVVHR--DGKLIGYNTDGIGFVRALQ-SISE---- 115

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAA 350
                   PL  +  +L GAGGA RA+ F     G + + I +   ++AK+L S  M   
Sbjct: 116 -------DPLQEKRILLIGAGGASRAIYFSLADVGVKEIDIANRTRDKAKNLISGCMENV 168

Query: 351 RPFEDILNFQPEKGA---ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL 407
                 L    E      I+   T +GMHP+ +  P+   +L+   +V D +Y P +T++
Sbjct: 169 NSHALSLECAAENQGEYDIIIQTTTIGMHPHVEYTPLEIRSLKQGTIVSDIIYNPFETKI 228

Query: 408 LKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           L DA+  GAII +G++MF+ Q    F ++TG     + M+++V+ + 
Sbjct: 229 LGDAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIDRMKQLVMREL 275

Bacillus weihenstephanensis (strain KBAB4) (taxid: 315730)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B9IYA1|AROE_BACCQ Shikimate dehydrogenase OS=Bacillus cereus (strain Q1) GN=aroE PE=3 SV=1

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 154/288 (53%), Gaps = 22/288 (7%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
           +++G+I  P+GHS  P++HN  F H+N +  Y    V +  L +      +   +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K A+M + DE+ PLA+ I AVNT++ +  DGKLIGYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVKALQSISSE---- 116

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDFERAKSL----ASDV 346
                   PL  +  +L GAGGA RA+ F     G + + + +   ++AK L     + V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADVGVKEIDVANRTVDKAKELITACTATV 168

Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
              A   E+    Q E   I+   T +GMHP  +  P+   +L+   +V D +Y P +T+
Sbjct: 169 HSVALSLEEATEEQ-ENYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFETK 227

Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           +L +A+  GA+I +G++MF+ Q    F ++TG+    E M+++V+ K 
Sbjct: 228 ILCEAKEQGAMIQNGIDMFVYQGALAFEMWTGRTPNIERMKQLVIRKL 275

Bacillus cereus (strain Q1) (taxid: 361100)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B7HPN3|AROE_BACC7 Shikimate dehydrogenase OS=Bacillus cereus (strain AH187) GN=aroE PE=3 SV=1

 Score =  160 bits (405), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 154/288 (53%), Gaps = 22/288 (7%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
           +++G+I  P+GHS  P++HN  F H+N +  Y    V +  L +      +   +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K A+M + DE+ PLA+ I AVNT++ +  DGKLIGYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVKALQSISSE---- 116

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDFERAKSL----ASDV 346
                   PL  +  +L GAGGA RA+ F     G + + + +   ++AK L     + V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADVGVKEIDVANRTVDKAKELITACTATV 168

Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
              A   E+    Q E   I+   T +GMHP  +  P+   +L+   +V D +Y P +T+
Sbjct: 169 HSVALSLEEATEEQ-ENYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFETK 227

Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           +L +A+  GA+I +G++MF+ Q    F ++TG+    E M+++V+ K 
Sbjct: 228 ILCEAKEQGAMIQNGIDMFVYQGALAFEMWTGRTPNIERMKQLVIRKL 275

Bacillus cereus (strain AH187) (taxid: 405534)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B7IYI7|AROE_BACC2 Shikimate dehydrogenase OS=Bacillus cereus (strain G9842) GN=aroE PE=3 SV=1

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 155/288 (53%), Gaps = 22/288 (7%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
           +++G+I  P+GHS  P++HN  F H+N +  Y    V++  L +      +   +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNNAFEHLNMDAHYHAFLVEEEVLGEAVRGLKALGISGFNVT 62

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K A+M++ DE+ PLA+ I AVNT++ +  +G+LIGYNTD    + A++    E    
Sbjct: 63  TPHKVAIMEYLDEIDPLARKIGAVNTVVHK--NGRLIGYNTDGIGFVRALQSISHE---- 116

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDFERAKSL----ASDV 346
                   PL G+  +L GAGGA RA+ F     G + + + +   ++AK L     +DV
Sbjct: 117 --------PLQGKRILLLGAGGASRAIYFSLADVGVKEIDVANRTVDKAKELIAARTADV 168

Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
              A   E     Q     I+   T +GMHP+ +  P+   +L+   +V D +Y P +T+
Sbjct: 169 NSVALSLEKATEEQGNYDIII-QTTTIGMHPHVEHTPLQICSLKKGTIVSDIIYNPFETK 227

Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           +L +A+  GAII +G++MF+ Q    F ++TG       M+++V+ K 
Sbjct: 228 ILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGSVPNIGRMKQLVIEKL 275

Bacillus cereus (strain G9842) (taxid: 405531)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q6HDI8|AROE_BACHK Shikimate dehydrogenase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=aroE PE=3 SV=1

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 154/290 (53%), Gaps = 26/290 (8%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
           +++G+I  P+GHS  P++HN  F H+N +  Y    V +  L +      +   +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K A+M + DE+ PLA+ I AVNT++ +  DGKLIGYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQSISSE---- 116

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDFERAKSL----ASDV 346
                   PL  +  +L GAGGA RA+ F     G + + + +   ++AK L     + V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTATV 168

Query: 347 MGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK 404
              A   E       E+G+  I+   T +GMHP  +  P+   +L+   +V D +Y P +
Sbjct: 169 HSVALSLE---KATKEQGSYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFE 225

Query: 405 TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           T++L +A+  GAII +G++MF+ Q    F ++TG     E M+++V+ K 
Sbjct: 226 TKILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVIRKL 275

Bacillus thuringiensis subsp. konkukian (strain 97-27) (taxid: 281309)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|B7JNW6|AROE_BACC0 Shikimate dehydrogenase OS=Bacillus cereus (strain AH820) GN=aroE PE=3 SV=1

 Score =  155 bits (393), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 151/288 (52%), Gaps = 22/288 (7%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
           +++G+I  P+GHS  P++HN  F H+N +  Y    V +  L +      +   +GF+V 
Sbjct: 3   QLYGVIGNPIGHSLSPVMHNDAFEHLNMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K A+M + DE+ PLA+ I AVNT++ +  DGKLIGYNTD    + A++    E    
Sbjct: 63  TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQSISSE---- 116

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDFERAKSL----ASDV 346
                   PL  +  +L GAGGA RA+ F     G + + + +   ++AK L     + V
Sbjct: 117 --------PLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTATV 168

Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
              A   E     Q     I+   T +GMHP  +  P+   +L+   +V D +Y P +T+
Sbjct: 169 HSVALSLEKATKEQGNYDIII-QTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFETK 227

Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           +L +A+  GAII +G++MF+ Q    F ++TG     E M+++V+ K 
Sbjct: 228 ILCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVIRKL 275

Bacillus cereus (strain AH820) (taxid: 405535)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
225451144	519	PREDICTED: bifunctional 3-dehydroquinate	0.991	0.867	0.76	0.0
255542470	519	shikimate dehydrogenase, putative [Ricin	0.991	0.867	0.751	0.0
224130894	518	dehydroquinate dehydratase/ shikimate de	0.988	0.866	0.742	0.0
356504076	524	PREDICTED: bifunctional 3-dehydroquinate	0.991	0.858	0.741	0.0
224125426	518	dehydroquinate dehydratase/ shikimate de	0.988	0.866	0.728	0.0
147837952	1071	hypothetical protein VITISV_034026 [Viti	0.960	0.407	0.726	0.0
57920902	521	3-dehydroquinate dehydratase / shikimate	0.988	0.861	0.701	1e-176
356573042	524	PREDICTED: LOW QUALITY PROTEIN: bifuncti	0.991	0.858	0.681	1e-172
255559348	515	shikimate dehydrogenase, putative [Ricin	0.986	0.869	0.619	1e-150
224128592	504	dehydroquinate dehydratase/ shikimate de	0.927	0.835	0.611	1e-145

>gi|225451144|ref|XP_002270055.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic [Vitis vinifera] gi|298204989|emb|CBI34296.3| unnamed protein product [Vitis vinifera]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/450 (76%), Positives = 389/450 (86%)

Query: 5   VSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 64
           V RPKW GG YEGDEH RLEALHLAE LGADY+DFELKVAS+ LGKQ     S +R IVS
Sbjct: 70  VYRPKWEGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGKQKMDQHSSSRTIVS 129

Query: 65  CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 124
           C +D  TP  EDL   V+ +Q+TGAD+IKLV +  +ITEI +IF LLSHCQ+P+IAYS+G
Sbjct: 130 CYVDGVTPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHLLSHCQMPLIAYSIG 189

Query: 125 ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           +RG +SQ+L  KF G LVYGS++G+PV GLPT+ESLR+ YKV++IN DTKVFGLISKPVG
Sbjct: 190 DRGFMSQILCRKFGGFLVYGSMEGSPVAGLPTLESLREAYKVQYINKDTKVFGLISKPVG 249

Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSKGPILHNP FRHVNYNGIYVPM VDDLK+FFS YSSPDFAGFSVG PYKEAV  FCDE
Sbjct: 250 HSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFAGFSVGIPYKEAVTGFCDE 309

Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           +HPLAQ+I AVNTI+RRPSDGKLIGYNTDCEASITAIEDA++ERG  NG A   SPL G+
Sbjct: 310 LHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRERGLPNGEAPLNSPLTGK 369

Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
            FVL GAGGAGRALAFGA+SRGA++VIFD+DF+RA SLA  V G  + +ED+ NFQPEKG
Sbjct: 370 QFVLVGAGGAGRALAFGARSRGAQLVIFDLDFDRANSLAHAVSGEVKLYEDVANFQPEKG 429

Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
           AILANATP+GMHPNTDR+PV+EETL DYQLVFD+VYTPRKTRLLK+AEAAGAIIVSGVEM
Sbjct: 430 AILANATPVGMHPNTDRIPVAEETLSDYQLVFDSVYTPRKTRLLKEAEAAGAIIVSGVEM 489

Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           FLRQAIGQFNLFTG EAP+EFMREI+L+KF
Sbjct: 490 FLRQAIGQFNLFTGGEAPEEFMREIILSKF 519

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542470|ref|XP_002512298.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223548259|gb|EEF49750.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  681 bits (1757), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/450 (75%), Positives = 395/450 (87%)

Query: 5   VSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 64
           V RPK  GGLYEGDE  RLEAL LA  LGADYVDFELKVAS+++G+   +H +G++ IVS
Sbjct: 70  VYRPKSEGGLYEGDEPTRLEALRLAYVLGADYVDFELKVASDLIGELKGTHHTGSKVIVS 129

Query: 65  CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 124
           C ++ + P++E+L  LV+ MQATGADIIKLV + N+ITE+ RIF L+ HCQVPIIAYSVG
Sbjct: 130 CYVNGDMPTKENLSQLVASMQATGADIIKLVSTANNITELDRIFHLILHCQVPIIAYSVG 189

Query: 125 ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           ERGL+SQLLSPKF G+L+YGS++G+ + GLPT++SLR+ YKV +IN+DTKVFGL+SKPV 
Sbjct: 190 ERGLISQLLSPKFGGSLLYGSMEGSSIPGLPTLDSLREAYKVAYINSDTKVFGLVSKPVS 249

Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSKGP+LHNPTFRH NYNG YVPMFVDDLK+FFS YSSPDFAGFSVGFPYKEAV++FCDE
Sbjct: 250 HSKGPLLHNPTFRHANYNGTYVPMFVDDLKEFFSVYSSPDFAGFSVGFPYKEAVVEFCDE 309

Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           VHPLA++I AVNTIIRRP DGKLIG+NTDCEA+ITAIEDA+KE+GY +G  S  SPL GR
Sbjct: 310 VHPLAKSIGAVNTIIRRPGDGKLIGHNTDCEAAITAIEDALKEQGYMDGRTSSNSPLTGR 369

Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
            FVL GAGGAGRALAFGAKSRGAR+VIFDID ERAK LA  V G A+ FE+++NF+PE G
Sbjct: 370 QFVLVGAGGAGRALAFGAKSRGARIVIFDIDLERAKFLADAVSGEAQLFENVVNFEPENG 429

Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
           AILANATP+GMHPNT+R+PV+E TL  YQLVFDAVYTPRKTRLLK+AEAAGAIIVSGVEM
Sbjct: 430 AILANATPIGMHPNTERIPVAEATLGIYQLVFDAVYTPRKTRLLKEAEAAGAIIVSGVEM 489

Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           FLRQA+GQF+LFTG+EAP EFMREIVLAKF
Sbjct: 490 FLRQAMGQFSLFTGREAPTEFMREIVLAKF 519

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130894|ref|XP_002328402.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222838117|gb|EEE76482.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  674 bits (1739), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/450 (74%), Positives = 390/450 (86%), Gaps = 1/450 (0%)

Query: 5   VSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 64
           V RPKW GG YEGDEH+RLEAL LA DLGADY+D ELKVAS ++ +  + HQ+G + IVS
Sbjct: 70  VYRPKWEGGQYEGDEHRRLEALRLANDLGADYIDLELKVASELIWELKNKHQNGGKVIVS 129

Query: 65  CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 124
             L+  TPS+E+L +LV+ MQAT ADIIK+V + +DITE+ RIF LLSHC+VP +AYSVG
Sbjct: 130 SYLNGATPSKENLSHLVATMQATEADIIKVVSNADDITEMERIFHLLSHCEVPAVAYSVG 189

Query: 125 ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           ERGL+SQLL PKF GALVYGS++G  + GLPT++SLR+ YKV+ IN+DTKVFGL+SKPVG
Sbjct: 190 ERGLISQLLCPKFGGALVYGSMEGNSIPGLPTLDSLREAYKVDCINSDTKVFGLVSKPVG 249

Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSKGP+LHNPT RHVN+NGIYVPMFVDDLKKFF  Y+SPDFAG+SVGFPYKEAV++FCDE
Sbjct: 250 HSKGPLLHNPTLRHVNFNGIYVPMFVDDLKKFFDVYASPDFAGYSVGFPYKEAVVQFCDE 309

Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           VHPLA+ I AVNTIIRRP DGKLIGYNTDCE SITAIEDA++++ Y NG  S  SPLAG+
Sbjct: 310 VHPLAKCIGAVNTIIRRPCDGKLIGYNTDCEGSITAIEDALRDQKYVNGR-SLNSPLAGK 368

Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
            FV+ GAGGAGRA+A GAKSRGAR++IFDID ERAKSLA  V G A+ FE + +FQPE G
Sbjct: 369 QFVVVGAGGAGRAIAVGAKSRGARLIIFDIDLERAKSLARAVSGEAQHFESLAHFQPENG 428

Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
           AILANATP+GMHP+TDR+P +EETL +YQLVFDAVYTPRKTRLLKDA+AAGAI VSGVEM
Sbjct: 429 AILANATPIGMHPSTDRIPAAEETLGNYQLVFDAVYTPRKTRLLKDADAAGAITVSGVEM 488

Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           FLRQAIGQFNLFTG+EAPK+FMREIVLAKF
Sbjct: 489 FLRQAIGQFNLFTGREAPKDFMREIVLAKF 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504076|ref|XP_003520825.1| PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  669 bits (1726), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/452 (74%), Positives = 387/452 (85%), Gaps = 2/452 (0%)

Query: 5   VSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNI--LGKQYSSHQSGTRFI 62
           V+RPKW GGLYEGDE+KRLEAL LA +L AD++D ELK AS +  L +   +H S  + I
Sbjct: 73  VNRPKWEGGLYEGDENKRLEALQLAVELSADFIDVELKAASCLPTLVEHMRNHNSHGKII 132

Query: 63  VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 122
           VSC +D  TP  E L  LV  MQATGADIIKLV    DITEI RIF L  +CQVP+IAYS
Sbjct: 133 VSCYVDGTTPPHEVLLQLVELMQATGADIIKLVTLAADITEIKRIFSLFLYCQVPLIAYS 192

Query: 123 VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKP 182
           VGERGL+SQLLSPKF G  VYGSL G P+ GLP+++S+++ YK+EH+NADTKVFGLISKP
Sbjct: 193 VGERGLISQLLSPKFGGFFVYGSLAGNPIPGLPSLDSIQEAYKLEHVNADTKVFGLISKP 252

Query: 183 VGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 242
           V HS+GPILHNP+F+ VNYNGIYVPMFVDDLKKFFSTY SPDF+GFSVG PYKE V++FC
Sbjct: 253 VSHSRGPILHNPSFKDVNYNGIYVPMFVDDLKKFFSTYPSPDFSGFSVGIPYKEEVLRFC 312

Query: 243 DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLA 302
           DEVHPLAQ+I AVNTIIRRP DGKL+GYNTDCEA+ITAIEDA+ E G  +G AS GSPLA
Sbjct: 313 DEVHPLAQSIGAVNTIIRRPRDGKLVGYNTDCEAAITAIEDALIEHGCNDGEASLGSPLA 372

Query: 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPE 362
           GR+FVL GAGGAG+ALAFGAKSRGAR+VIFDIDF+RAKSLA  V G A+PF++++NFQPE
Sbjct: 373 GRLFVLVGAGGAGKALAFGAKSRGARLVIFDIDFDRAKSLACAVFGEAQPFKELVNFQPE 432

Query: 363 KGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGV 422
           KGAILANATP+GMHPNTDR+PV+E TL DY+LVFDAVYTPR+TRLL +A+AAGAI V+GV
Sbjct: 433 KGAILANATPVGMHPNTDRIPVAEATLEDYRLVFDAVYTPRRTRLLNEADAAGAITVAGV 492

Query: 423 EMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           EMFLRQAIGQFNLFTG EAP+EFMREIVL+KF
Sbjct: 493 EMFLRQAIGQFNLFTGLEAPEEFMREIVLSKF 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125426|ref|XP_002319583.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222857959|gb|EEE95506.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  663 bits (1710), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/450 (72%), Positives = 390/450 (86%), Gaps = 1/450 (0%)

Query: 5   VSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 64
           V RP+W GG YEGDEH RLEAL LA +LGADY+D ELKVAS+++ +  + HQ+G + IVS
Sbjct: 70  VYRPRWEGGQYEGDEHTRLEALRLAHELGADYIDVELKVASDLVREVKNKHQTGGKVIVS 129

Query: 65  CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 124
             L   TPS+EDL +LV+ MQAT ADIIK+V + NDITE+ RIF LLSH QVP +AYS+G
Sbjct: 130 SYLSGATPSKEDLSHLVASMQATKADIIKVVSNANDITELDRIFHLLSHMQVPAVAYSLG 189

Query: 125 ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           ERGL+SQLL PKF GALVYG+++G  + GLPT++SLR+ YKVE+IN+DTKVFGL+SKPV 
Sbjct: 190 ERGLISQLLCPKFGGALVYGAMEGNSIPGLPTLDSLREAYKVENINSDTKVFGLVSKPVS 249

Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSKGPILHNP FRH N+NGIYVPMFVDDLK+FF  Y+SPDFAG+SVGFPYKEAV++FCDE
Sbjct: 250 HSKGPILHNPAFRHANFNGIYVPMFVDDLKEFFEVYASPDFAGYSVGFPYKEAVVQFCDE 309

Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           VHPLA++I AVNTIIR+PSDGKLIGYNTDCE SI +IEDA+K++ Y NG AS  SPLAG+
Sbjct: 310 VHPLAKSIGAVNTIIRKPSDGKLIGYNTDCEGSIASIEDALKDQRYING-ASLNSPLAGK 368

Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
            FV+ GAGGAGRA+A GAKSRGARV+IFDID +RAKSLA  V G A+ F+ + +FQPEKG
Sbjct: 369 QFVVVGAGGAGRAIAVGAKSRGARVIIFDIDLDRAKSLAQVVSGEAQHFDSLAHFQPEKG 428

Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
           AILANATP+GMHP+TDR+PV+E TL +YQLVFDAVYTPRKTRLL+DA+AAGAI VSGVEM
Sbjct: 429 AILANATPIGMHPSTDRIPVAEATLGNYQLVFDAVYTPRKTRLLEDADAAGAITVSGVEM 488

Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           FL+QAIGQF+LFTG+EAPK+FMREIVLAKF
Sbjct: 489 FLKQAIGQFSLFTGREAPKDFMREIVLAKF 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147837952|emb|CAN60563.1| hypothetical protein VITISV_034026 [Vitis vinifera]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 332/457 (72%), Positives = 375/457 (82%), Gaps = 21/457 (4%)

Query: 5   VSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 64
           V RPKW GG YEGDEH RLEALHLAE LGADY+DFELKVAS+ LGKQ     S +R IVS
Sbjct: 70  VYRPKWEGGQYEGDEHSRLEALHLAEKLGADYIDFELKVASDFLGKQKMDQHSSSRTIVS 129

Query: 65  CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVG 124
           C +D  TP  EDL   V+ +Q+TGAD+IKLV +  +ITEI +IF LLSHCQ+P+IAYS+G
Sbjct: 130 CYVDGVTPPIEDLICRVALLQSTGADMIKLVINATNITEITKIFHLLSHCQMPLIAYSIG 189

Query: 125 ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           +RG +SQ+L  KF G LVYGS++G+PV GLPT+ESLR+ YKV++IN DTKVFGLISKPVG
Sbjct: 190 DRGFMSQILCRKFGGFLVYGSMEGSPVAGLPTLESLREAYKVQYINKDTKVFGLISKPVG 249

Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSKGPILHNP FRHVNYNGIYVPM VDDLK+FFS YSSPDFAGFSVG PYKEAV  FCDE
Sbjct: 250 HSKGPILHNPAFRHVNYNGIYVPMLVDDLKEFFSIYSSPDFAGFSVGIPYKEAVTGFCDE 309

Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           +HPLAQ+I AVNTI+RRPSDGKLIGYNTDCEASITAIEDA++ERG  NG A   SPL G+
Sbjct: 310 LHPLAQSIGAVNTIMRRPSDGKLIGYNTDCEASITAIEDALRERGLPNGEAPLNSPLTGK 369

Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE---------------------RAKSLA 343
            FVL GAGGAGRALAFGA+SRGA++VIFD+DFE                     RA SLA
Sbjct: 370 QFVLVGAGGAGRALAFGARSRGAQLVIFDLDFEKSIPGRITALLSNLHCSSPKDRANSLA 429

Query: 344 SDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR 403
             V G  + +ED+ NFQPEKGAILANATP+GMHPNTDR+PV+EETL DYQLVFD+VYTPR
Sbjct: 430 HAVSGEVKLYEDVANFQPEKGAILANATPVGMHPNTDRIPVAEETLSDYQLVFDSVYTPR 489

Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKE 440
           KTRLLK+AEAAGAIIVSGVEMFLRQAIGQFNLFTG E
Sbjct: 490 KTRLLKEAEAAGAIIVSGVEMFLRQAIGQFNLFTGGE 526

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|57920902|gb|AAS90324.2| 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 2 [Nicotiana tabacum]

 Score =  623 bits (1606), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 318/453 (70%), Positives = 373/453 (82%), Gaps = 4/453 (0%)

Query: 5   VSRPKWAGGLYEGDE---HKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRF 61
           V RP W G  +E D+   HK+LE L  A++LGADY++ +LK+AS+   K+     SG + 
Sbjct: 70  VYRPIWEGNEFEEDDDHIHKQLEVLRWAKELGADYIELDLKIASDFTKKEKPRWSSGCKV 129

Query: 62  IVSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAY 121
           I SC +D  T S+EDL  +V+ MQ+TGADI+K+V + NDITE+ ++F LLSHCQVP+IAY
Sbjct: 130 IASCFVDNVT-SKEDLSQVVAHMQSTGADILKIVTNANDITELEKMFHLLSHCQVPLIAY 188

Query: 122 SVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISK 181
           S+GERGL+SQLL PKF   LVYGSL    V GLPT+ SLRQ Y V+ ++ DTKVFGLISK
Sbjct: 189 SLGERGLISQLLGPKFGSVLVYGSLDCNAVPGLPTLGSLRQAYGVDFMDTDTKVFGLISK 248

Query: 182 PVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKF 241
           PVGHSKGPILHNPTFRHV YNGIYVPMFVDDLK+FF  YSSPDFAGFSVG PYKEAV+ F
Sbjct: 249 PVGHSKGPILHNPTFRHVGYNGIYVPMFVDDLKEFFRVYSSPDFAGFSVGIPYKEAVVSF 308

Query: 242 CDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPL 301
           CDEV PLA++I AVNTII+RP DGKLIGYNTDCEASITAIEDA+K  G  NG A   SPL
Sbjct: 309 CDEVDPLAKSIGAVNTIIQRPCDGKLIGYNTDCEASITAIEDALKVNGLTNGAAFLPSPL 368

Query: 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQP 361
           AG++FVL GAGGAGRALAFGAKSR A +VIFDIDF+RAK+LA+ V G A PFE++ +FQP
Sbjct: 369 AGKLFVLVGAGGAGRALAFGAKSRRAEIVIFDIDFDRAKALAAAVSGEALPFENLASFQP 428

Query: 362 EKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSG 421
           EKGAILANATP+GMHPN DR+PVSE +L+DY +VFDAVYTPRKT LLKDAEAAGAI VSG
Sbjct: 429 EKGAILANATPIGMHPNKDRIPVSEASLKDYVVVFDAVYTPRKTTLLKDAEAAGAITVSG 488

Query: 422 VEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           VEMFLRQAIGQF+LFT  +AP+EFMR+IV+AKF
Sbjct: 489 VEMFLRQAIGQFHLFTRTKAPEEFMRDIVMAKF 521

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573042|ref|XP_003554674.1| PREDICTED: LOW QUALITY PROTEIN: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like [Glycine max]

 Score =  612 bits (1579), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 308/452 (68%), Positives = 370/452 (81%), Gaps = 2/452 (0%)

Query: 5   VSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNI--LGKQYSSHQSGTRFI 62
           V++PKW GGLYEGDE+ +LEAL LA +LGAD+++ +LK AS +  L +   +H S  + I
Sbjct: 73  VNQPKWEGGLYEGDENMQLEALQLAVELGADFIEVQLKAASCLPTLVEHKRNHNSHGKII 132

Query: 63  VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYS 122
           VSC +D   P +E+L  LV  MQ T ADIIKLV    DITEI +IF L  +CQVP+IAYS
Sbjct: 133 VSCYVDGIIPPQEELLQLVELMQGTEADIIKLVTHAADITEIIKIFSLFPYCQVPLIAYS 192

Query: 123 VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKP 182
           VGERGL+SQLLS KF G  VY SL G P+ GLP+++++++ YK+EH+ ADTKVFGLISKP
Sbjct: 193 VGERGLISQLLSQKFGGFFVYESLAGNPIPGLPSLDNIQEAYKLEHVKADTKVFGLISKP 252

Query: 183 VGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 242
           + HSKGPILHNP FRH+NYNGIYVPMFVDDLK+FF+TY  PDF+GF VG PYKE +++FC
Sbjct: 253 ISHSKGPILHNPPFRHINYNGIYVPMFVDDLKEFFNTYPCPDFSGFIVGIPYKEEILRFC 312

Query: 243 DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLA 302
           DEVHPLAQ+I AVNTIIRR   GKL+GYNT CEA+ITAIEDA+ E G  +G AS GSPLA
Sbjct: 313 DEVHPLAQSIGAVNTIIRRARHGKLVGYNTHCEAAITAIEDALIEHGCNDGGASLGSPLA 372

Query: 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPE 362
           GR+FVL GAGGAG ALAFG+KSRGA +VIFDI+F+RAKSLA  V G A+PF++++NFQPE
Sbjct: 373 GRLFVLVGAGGAGIALAFGSKSRGALLVIFDINFDRAKSLACAVFGEAQPFKELVNFQPE 432

Query: 363 KGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGV 422
           K AILANATP+GM PNTDR+PV+E TL D +LVFDAVY  R+TRLLK+A+AAGAI V GV
Sbjct: 433 KEAILANATPVGMLPNTDRIPVAEATLEDXRLVFDAVYRLRRTRLLKEADAAGAITVGGV 492

Query: 423 EMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           EMFLRQAIGQFNLFT  EAP+EFMREIVL+KF
Sbjct: 493 EMFLRQAIGQFNLFTSLEAPEEFMREIVLSKF 524

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559348|ref|XP_002520694.1| shikimate dehydrogenase, putative [Ricinus communis] gi|223540079|gb|EEF41656.1| shikimate dehydrogenase, putative [Ricinus communis]

 Score =  538 bits (1385), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 278/449 (61%), Positives = 351/449 (78%), Gaps = 1/449 (0%)

Query: 7   RPKWAGGLYEGDEHKR-LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 65
           RPK +     GD  K  L+ L LA DL  ++V+ E +VAS++   +Y  ++S  + IVS 
Sbjct: 67  RPKTSKISSNGDSKKTCLQVLSLALDLDVEFVEMEYEVASDVSMAEYIYNRSSGKLIVSS 126

Query: 66  NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE 125
            ++   PS E LG L++ +Q+TGAD+IKLV +V+ IT++A +F++L+HCQVP+IA +VG 
Sbjct: 127 YVNGGKPSAEKLGNLIANLQSTGADVIKLVINVDYITDLAPVFKMLAHCQVPLIALAVGS 186

Query: 126 RGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGH 185
           RGL+SQLL PKF G LVYGSL+   V G+PT+ SLR  YK+E+IN+DTKVFGLIS PVGH
Sbjct: 187 RGLISQLLGPKFGGFLVYGSLRDKAVPGMPTLFSLRHVYKLEYINSDTKVFGLISNPVGH 246

Query: 186 SKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV 245
           SKGPILHNP FRH  YNGIYVPM VDD+K+FF TY+S DFAGFSVG P+KEA +  CDEV
Sbjct: 247 SKGPILHNPAFRHTGYNGIYVPMQVDDIKEFFRTYTSTDFAGFSVGIPHKEAAVSCCDEV 306

Query: 246 HPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRM 305
           HPLA++I AVNTI+RRP+DGKL+GYNTDCEASITAIEDA++ER   N  A   SPLAG+ 
Sbjct: 307 HPLAKSIGAVNTIVRRPTDGKLVGYNTDCEASITAIEDALRERRPTNRGALDTSPLAGKT 366

Query: 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGA 365
           FVL GAGGAGRALAFGA SRGARVV+F+ +FERAKSLA+ V G A P++ +  FQ E   
Sbjct: 367 FVLIGAGGAGRALAFGASSRGARVVVFNRNFERAKSLANAVSGEALPYKALDRFQRENDM 426

Query: 366 ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF 425
           ILANA+ +GM PNT + PVS+E L+ Y+LVFDAVYTPR TRLL++A+  GA++VSGVEMF
Sbjct: 427 ILANASAVGMEPNTHQSPVSKEALKSYELVFDAVYTPRNTRLLQEAKEVGAVVVSGVEMF 486

Query: 426 LRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           +RQA+GQF LFTG  AP+ FMR++VL +F
Sbjct: 487 IRQALGQFRLFTGGLAPEAFMRKLVLEQF 515

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128592|ref|XP_002320370.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa] gi|222861143|gb|EEE98685.1| dehydroquinate dehydratase/ shikimate dehydrogenase [Populus trichocarpa]

 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/432 (61%), Positives = 338/432 (78%), Gaps = 11/432 (2%)

Query: 23  LEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYLVS 82
           L+ L LA DL  ++V+ + +VAS     +Y  ++S T+ IVS  ++   PS E+LGYL++
Sbjct: 84  LQVLRLAFDLNVEFVEMDYEVASEDDMAEYVYNRSNTKLIVSSYVNGRKPSAEELGYLIA 143

Query: 83  RMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALV 142
            MQ+TGAD++KLV  V  IT++A +F +L+HCQ+P+IA +VG RGL+SQLL PKF G LV
Sbjct: 144 CMQSTGADVLKLVLDVEKITDLAPVFTMLTHCQIPLIALAVGSRGLISQLLGPKFGGFLV 203

Query: 143 YGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYN 202
           YGSL    V G+PT+ SLRQ YK+E+INADTKVFGLIS PVGHSKGP+LHNP FRH  YN
Sbjct: 204 YGSLSDKAVPGMPTLLSLRQIYKLEYINADTKVFGLISNPVGHSKGPVLHNPAFRHTGYN 263

Query: 203 GIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRP 262
           GIYVPM VDD+K+FF TY+S DFAGFSVG P+KEA +  CDEVHPLA++I AVNTI+RRP
Sbjct: 264 GIYVPMQVDDVKEFFRTYTSSDFAGFSVGIPHKEAAVGCCDEVHPLAKSIGAVNTIVRRP 323

Query: 263 SDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGA 322
           +DGKL+GYNTDC+ASI+AIEDA+             SPL+G+ FVL GAGGAGRALAFGA
Sbjct: 324 TDGKLVGYNTDCDASISAIEDALT-----------ASPLSGKTFVLIGAGGAGRALAFGA 372

Query: 323 KSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV 382
           KSRGARV+IF+ ++ERA++LA  V G A P+E +  F+P  G ILANA+ +GM PN+D+ 
Sbjct: 373 KSRGARVIIFNRNYERARALAKAVSGEALPYESLDRFRPVNGMILANASAIGMEPNSDQS 432

Query: 383 PVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAP 442
           PVS+E L+  +LVFDAVYTPR TRLL++A+  GA++VSGVEMF+RQA+GQF LFTG  AP
Sbjct: 433 PVSKEILKACELVFDAVYTPRNTRLLREAKEVGAVVVSGVEMFIRQALGQFRLFTGGLAP 492

Query: 443 KEFMREIVLAKF 454
           + FMR++VL +F
Sbjct: 493 EAFMRKLVLEQF 504

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
TAIR|locus:2081036	603	MEE32 "MATERNAL EFFECT EMBRYO	0.982	0.739	0.496	2.9e-112
TIGR_CMR|CHY_0623	280	CHY_0623 "shikimate 5-dehydrog	0.585	0.95	0.306	6.9e-31
TIGR_CMR|BA_4561	308	BA_4561 "shikimate 5-dehydroge	0.581	0.857	0.285	1e-29
TIGR_CMR|DET_0465	286	DET_0465 "shikimate 5-dehydrog	0.579	0.919	0.305	4.9e-26
TIGR_CMR|SPO_3891	277	SPO_3891 "shikimate 5-dehydrog	0.555	0.909	0.329	2.8e-24
POMBASE|SPAC1834.02	1573	aro1 "pentafunctional aromatic	0.570	0.164	0.302	7.7e-21
UNIPROTKB|P0A6D5	288	ydiB "YdiB" [Escherichia coli	0.588	0.927	0.272	5.6e-20
TIGR_CMR|GSU_1490	286	GSU_1490 "shikimate 5-dehydrog	0.585	0.930	0.268	5.6e-20
CGD|CAL0004346	1551	ARO1 [Candida albicans (taxid:	0.596	0.174	0.301	2.9e-19
UNIPROTKB|Q48JV1	284	aroE "Shikimate dehydrogenase"	0.574	0.919	0.273	4.2e-17

TAIR|locus:2081036 MEE32 "MATERNAL EFFECT EMBRYO ARREST 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 224/451 (49%), Positives = 297/451 (65%)

Query:     7 RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGT-RFIVSC 65
             RPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  + K     + G  + IVS 
Sbjct:   155 RPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFI-KSIDGKKPGKFKVIVSS 213

Query:    66 NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE 125
             +    TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   +GE
Sbjct:   214 HNYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGE 273

Query:   126 RGLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPV 183
             RGL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I KPV
Sbjct:   274 RGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPV 333

Query:   184 GHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCD 243
              HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++ CD
Sbjct:   334 SHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCD 393

Query:   244 EVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAG 303
             EV PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +   S  SPLA 
Sbjct:   394 EVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLAS 453

Query:   304 RMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEK 363
             +  V+              K +GA+VVI +  +ERA  LA  + G A    D+ N+ PE 
Sbjct:   454 KTVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPED 513

Query:   364 GAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVE 423
             G +LAN T +GM PN +  P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VSG E
Sbjct:   514 GMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSE 573

Query:   424 MFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
             MF+RQA  QF +FTG  APKE   +I ++K+
Sbjct:   574 MFVRQAYEQFEIFTGLPAPKELYWQI-MSKY 603

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA;IDA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019632 "shikimate metabolic process" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

TIGR_CMR|CHY_0623 CHY_0623 "shikimate 5-dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 89/290 (30%), Positives = 146/290 (50%)

Query:   169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
             IN +TK+ G+I  P+ H+  P +HN  F+ +N N +Y+P+ V  + L +      + +F 
Sbjct:     3 INGETKLTGIIGYPLKHTLSPQMHNEAFKALNLNFLYLPLEVAEESLPQAIYGLKAFNFR 62

Query:   227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
             G +V  PYKE V  F DEV   A+ I AVNTI+     G+LIGYNTD    + ++    K
Sbjct:    63 GINVTIPYKEKVFPFLDEVATEAKTIGAVNTIVH--DRGRLIGYNTDAPGFLLSL----K 116

Query:   287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
             E   +         + G+  +L               + GA ++I +   ++AK LA D 
Sbjct:   117 ENDVE---------VTGKKVLLLGAGGAARAVAYALLTAGAELIIANRTIDKAKELAKDF 167

Query:   347 MGAARPFEDI-LNFQPEKGA---ILANATPLGMHPNTDRVPVSEET--LRDYQLVFDAVY 400
              G  +  E + L  +P   A   +  N  PLGMHP  +++P  + T    D+ + +D +Y
Sbjct:   168 QGVGKISEILELGDKPISLAPYHMAVNTLPLGMHPYENQMPAVDFTGVTSDF-VAYDLIY 226

Query:   401 TPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
              P +T+ LK ++  GA  ++G+ M L Q +  F  +TG   P + M++ +
Sbjct:   227 NPAETKFLKASKEKGARTINGLSMLLWQGVLAFEKWTGVSPPVKVMKKAI 276

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|BA_4561 BA_4561 "shikimate 5-dehydrogenase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 81/284 (28%), Positives = 140/284 (49%)

Query:   174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSVG 231
             +++G+I  P+GHS  P++HN  F H+  +  Y    V +  L +      +   +GF+V 
Sbjct:     3 QLYGVIGNPIGHSLSPVMHNDAFEHLKMDAHYHAFLVKEEVLGEAVRGLKALGISGFNVT 62

Query:   232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
              P+K A+M + DE+ PLA+ I AVNT++ +  DGKLIGYNTD    + A++    E    
Sbjct:    63 TPHKVAIMDYLDEIDPLAKQIGAVNTVVHK--DGKLIGYNTDGIGFVRALQSISSE---- 116

Query:   292 NGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVV-IFDIDFERAKSLASDVMGAA 350
                     PL  +  +L                 G + + + +   ++AK L +      
Sbjct:   117 --------PLQEKRILLLGAGGASRAIYFSLADAGVKEIDVANRTVDKAKELIAACTATV 168

Query:   351 RPFE-DILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL 407
                   +     E+G   I+   T +GMHP  +  P+   +L+   +V D +Y P +T++
Sbjct:   169 HSVALSLEKATKEQGNYDIIIQTTTIGMHPRVEHTPLQISSLKKGTIVSDIIYNPFETKI 228

Query:   408 LKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 451
             L +A+  GAII +G++MF+ Q    F ++TG     E M+++V+
Sbjct:   229 LCEAKEQGAIIQNGIDMFVYQGALAFEMWTGCVPNIERMKQLVI 272

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|DET_0465 DET_0465 "shikimate 5-dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 295 (108.9 bits), Expect = 4.9e-26, P = 4.9e-26
 Identities = 88/288 (30%), Positives = 137/288 (47%)

Query:   175 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGF 232
             +FGLI  PV HS  P + N  F+H   + +Y+ +    ++L+   ++    +  G +V  
Sbjct:     8 LFGLIGFPVSHSVSPAMQNAAFKHCKLDYLYLTIAAKPEELQNVIASMGPLNIRGLNVTI 67

Query:   233 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKN 292
             P+K  V+K+ D + P A+ I AVNTI+    +G+L GYNTD    +  +E         N
Sbjct:    68 PHKIEVIKYIDSLDPAAEKIGAVNTIVNE--NGRLKGYNTDFGGFVRLLEH--------N 117

Query:   293 GTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVM----G 348
               A    P A + F L               + G  + +     E+AK LA  +     G
Sbjct:   118 RIA----P-AKQRFTLLGAGGSAHAIALAVCNLGGHLTVLARQEEKAKDLAGKMCLRLSG 172

Query:   349 AARPFE-DILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKT 405
               +  E +  N +       ++ N TP+GM     +  V    LR    V DA+Y P KT
Sbjct:   173 KTQGLELNDTNLEEALADTDVIVNCTPVGMGNLAGQSLVPPRLLRPDLTVIDAIYNPCKT 232

Query:   406 RLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAP-KEFMREIVLA 452
             RLL+DAE  GA I++G+EM + Q    F ++T ++AP +  M+E  LA
Sbjct:   233 RLLEDAEKRGARIINGLEMLVWQGAMSFEIWTNQKAPFRLMMKEAELA 280

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

TIGR_CMR|SPO_3891 SPO_3891 "shikimate 5-dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 280 (103.6 bits), Expect = 2.8e-24, P = 2.8e-24
 Identities = 89/270 (32%), Positives = 125/270 (46%)

Query:   177 GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPY 234
             G+I  P+ HSK P LH    +    NG Y+PM V   DL +   T     F G ++  P+
Sbjct:    10 GVIGHPISHSKSPRLHGHWLKTYGINGHYIPMDVAPQDLAQVVRTLPKAGFVGVNITIPH 69

Query:   235 KEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGT 294
             KEAVM   D++   A  I AVNT+I R  DG+++  NTD    +  +         K+G 
Sbjct:    70 KEAVMSVADQITDRATLIGAVNTLIFR-EDGRILADNTDGYGFMENLRAGAPGWDPKSGP 128

Query:   295 AS-FGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
             A  FG+  A R  +               ++R     + D DF +  ++A D + A    
Sbjct:   129 AVVFGAGGAARAVISALAEAGVPEVIVTNRTRVRADKLKD-DFGQRVTVA-DWVQAGNVI 186

Query:   354 EDILNFQPEKGAILANATPLGMHPNTD-RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE 412
             ED          ++ N T LGM    + RVP+  + LR   +V D VY P KTRLL +AE
Sbjct:   187 ED--------ARLVVNTTSLGMIGKPELRVPL--DGLRADAVVTDLVYAPLKTRLLAEAE 236

Query:   413 AAGAIIVSGVEMFLRQAIGQFNLFTGKEAP 442
               G   V G+ M L QA+  F  + G E P
Sbjct:   237 EMGCTTVDGLGMLLHQAVPGFERWFG-ERP 265

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

POMBASE|SPAC1834.02 aro1 "pentafunctional aromatic polypeptide Aro1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 256 (95.2 bits), Expect = 7.7e-21, Sum P(2) = 7.7e-21
 Identities = 82/271 (30%), Positives = 132/271 (48%)

Query:    12 GGLYEGDEHKRLEALHL-AEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCE 70
             GGL+  D+ +  + L L A   G D+VD EL  +S  +   Y  H+  T+ I+S +    
Sbjct:  1128 GGLFPNDKEEEAKELMLSAMRYGCDFVDVELGWSSETINILYQ-HKGYTKLIMSWHDLSG 1186

Query:    71 TPSEEDLGYLVSRMQATG--ADIIKLVFSVNDITEIARI--FQ--LLSHCQVPIIAYSVG 124
             T S       + +++     AD+IKLV   N++ +   +  F+  + +   +P+I +++G
Sbjct:  1187 TWSWARPHEWMQKVELASSYADVIKLVGMANNLNDNLELEEFRTRITNSMDIPLILFNMG 1246

Query:   125 ERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
               G +S++L+ KF   + +  L      G  TV+ L +   +       K F L  KP+ 
Sbjct:  1247 RFGQLSRILN-KFMTPVTHPLLPSKAAPGQLTVKQLNEARVLIGEILPEKFF-LFGKPIK 1304

Query:   185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
             HS+ PILH+  +  +     Y     D + +     + PDF G +V  PYK +VMKF DE
Sbjct:  1305 HSRSPILHSTAYELLGLPHTYEAFETDTVDEVQKVLNLPDFGGANVTIPYKLSVMKFMDE 1364

Query:   245 VHPLAQAIAAVNTIIRRPSDGKLI--GYNTD 273
             +   A+   AVNTII      KL+  G NTD
Sbjct:  1365 LSDEARFFGAVNTIIPIRIGDKLVLRGDNTD 1395

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0009423 "chorismate biosynthetic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|P0A6D5 ydiB "YdiB" [Escherichia coli K-12 (taxid:83333)]

 Score = 242 (90.2 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 81/297 (27%), Positives = 128/297 (43%)

Query:   169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 226
             + A  ++ GL++ P+ HS  P + N           Y+   VD+           +    
Sbjct:     3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMR 62

Query:   227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
             G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I AI    K
Sbjct:    63 GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI----K 116

Query:   287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVV-IF---DIDFERAKSL 342
             E G+          + G+  VL                 G + + +F   D  F++A + 
Sbjct:   117 ESGFD---------IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 167

Query:   343 A------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSE-ETLRDYQ 393
             A      +D +       D   F     +  IL N T +GM P  +   V++   L    
Sbjct:   168 AQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGL 227

Query:   394 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
             LV + VY P  T+LL+ A+ AG   + G  M L Q   QF L+TGK+ P E++++++
Sbjct:   228 LVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 284

GO:0000166 "nucleotide binding" evidence=IEA

GO:0030266 "quinate 3-dehydrogenase (NAD+) activity" evidence=IEA

GO:0052734 "shikimate 3-dehydrogenase (NAD+) activity" evidence=IEA

GO:0052733 "quinate 3-dehydrogenase (NADP+) activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA;IDA

GO:0009423 "chorismate biosynthetic process" evidence=IEA

TIGR_CMR|GSU_1490 GSU_1490 "shikimate 5-dehydrogenase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 242 (90.2 bits), Expect = 5.6e-20, P = 5.6e-20
 Identities = 78/290 (26%), Positives = 130/290 (44%)

Query:   173 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFAGFSV 230
             T+V G+I +PV HS  P++ N   + +  +  YVP  V++  L       ++    GF+V
Sbjct:     7 TRVLGIIGQPVSHSLSPLMQNAALQAMGLDYAYVPFAVEEDCLADAVRGLAALGVVGFNV 66

Query:   231 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 290
               P+K A++   D + P A+ I A N + R  SD  L+GYNTD    I ++ + +   G+
Sbjct:    67 TIPHKSAILPLLDRLSPEAELIGAANVVKREGSD--LVGYNTDGTGFIQSLSEDL---GF 121

Query:   291 KNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLAS----DV 346
                     +P   R+ V+               +  A VVI +    R + L++      
Sbjct:   122 --------TPAGCRILVMGAGGAARAAVASLAGAGAASVVIANRSIARGEELSAAFRRHF 173

Query:   347 MG---AARPFE-DILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
             +G   AA P + + LN   +   +L N + +GM   T    +    +  +  V+D VY P
Sbjct:   174 IGTQFAAIPLDPENLNRCVQNFDLLVNTSSVGMG-GTAFPGMDLSRMGPHGAVYDMVYVP 232

Query:   403 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452
               T LL +AE  G    +G+ M   Q      L+TG   P+  M+  ++A
Sbjct:   233 AVTPLLAEAERCGIRYANGIGMLAAQGECALELWTGVRPPEGLMKACLMA 282

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=ISS

GO:0009423 "chorismate biosynthetic process" evidence=ISS

CGD|CAL0004346 ARO1 [Candida albicans (taxid:5476)]

 Score = 226 (84.6 bits), Expect = 2.9e-19, Sum P(2) = 2.9e-19
 Identities = 88/292 (30%), Positives = 140/292 (47%)

Query:    12 GGLYEGDEHKRLEALHLAE-DLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC-NLDC 69
             GG +  +    L++L L    LG  YVD +L  A N L ++ SS +  TR I +  +++ 
Sbjct:  1111 GGKFPDENVDELKSLLLLGIRLGVAYVDLQL-TAPNELIEEISSKKGFTRVIGTYQDING 1169

Query:    70 ETP-SEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQV-PIIAYSVGERG 127
             E   +  +     ++  +  ADI++LV   N I +   +        + P+IA+++G +G
Sbjct:  1170 ELKWNNVEWKNKYNQGVSMNADIVRLVGKANSIQDNLDLENFKKQNTLKPLIAFNLGSQG 1229

Query:   128 LVSQLLSPKFNGALVYGSLKGTPV-LGLPTVESLRQTYKVEHINADT-KVFGLISKPVGH 185
              +SQ+L    NG     S K  P      T+  L QTY    I   T K F +I  P+ H
Sbjct:  1230 KLSQVL----NGTFTPISHKLLPNDEEFLTIGELNQTYF--DIGGFTAKKFWVIGSPIEH 1283

Query:   186 SKGPILHNPTFRHVN--YN-GIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC 242
             S+ P LHN  ++ +N  Y  G +    VD +  + +  + PDF G ++  P K  +MKF 
Sbjct:  1284 SRSPNLHNAGYKALNLPYQFGRFEATDVDVV--YDNLINKPDFGGLAITMPLKLDIMKFA 1341

Query:   243 DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEA-SITAIEDAIKERGYKNG 293
              ++   A+ I AVNT+I  P +G   G NTD    S + I   +  +   NG
Sbjct:  1342 TKLSDAAETIGAVNTLI--PIEGGYFGDNTDWVGISNSFIRAGVPPKSSSNG 1391

GO:0005829 "cytosol" evidence=IEA

GO:0003866 "3-phosphoshikimate 1-carboxyvinyltransferase activity" evidence=IEA

GO:0003855 "3-dehydroquinate dehydratase activity" evidence=IEA

GO:0004765 "shikimate kinase activity" evidence=IEA

GO:0003856 "3-dehydroquinate synthase activity" evidence=IEA

GO:0004764 "shikimate 3-dehydrogenase (NADP+) activity" evidence=IEA

UNIPROTKB|Q48JV1 aroE "Shikimate dehydrogenase" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 216 (81.1 bits), Expect = 4.2e-17, P = 4.2e-17
 Identities = 80/293 (27%), Positives = 128/293 (43%)

Query:   168 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLK-------KFFSTY 220
             H    + + GLI   +  S+ P +H           +Y  + +D L+       +   + 
Sbjct:     3 HAEKKSVLAGLIGSGIQASRTPAMHEHEGDAQGLRYLYRLIDIDALQLDISALPQLIESA 62

Query:   221 SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITA 280
              +  F G ++ FP K+AV+   DE+   A+ I AVNT++ +   GK IG+NTDC      
Sbjct:    63 QNCGFTGLNITFPCKQAVIPLLDELSAEARGIGAVNTVVFK--GGKRIGHNTDCLGFAEG 120

Query:   281 IEDAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGAR-VVIFDIDFERA 339
              +  + ++  +      G+  AG                    S G   + +F+++ +RA
Sbjct:   121 FQRGL-DKAPRQQVVQMGAGGAG------------AAVAHALLSAGVECLTVFEVEPQRA 167

Query:   340 KSLASDV---MGAARPFEDI-LNFQPEKGAILANATPLGMH--PNTDRVPVSEETLRDYQ 393
             + L  ++    GA R    I L     +   L N TP+GM   P T   P+  E LR   
Sbjct:   168 QGLVDNLNEHFGAGRAKVGIDLPAAMAEADGLVNTTPVGMAKLPGT---PLPVELLRPEL 224

Query:   394 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFM 446
              V + +Y P +T LLK A A G   + G  M + QA+  F LF+G+ A  E M
Sbjct:   225 WVAEIIYFPLETELLKHARALGCRTLDGSTMAVFQAVKAFELFSGQSADAERM 277

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SQT8	DHQSD_ARATH	1, ., 1, ., 1, ., 2, 5	0.5201	0.9779	0.7363	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.2.1.10	0.824
3rd Layer	1.1.1	0.766
3rd Layer	4.2.1	0.766
4th Layer	1.1.1.25	0.824

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00008899001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (519 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00036740001	SubName- Full=Chromosome chr4 scaffold_83, whole genome shotgun sequence; (456 aa)	•	•	•			•	•		0.976
	GSVIVG00005432001	SubName- Full=Chromosome undetermined scaffold_151, whole genome shotgun sequence; (278 aa)	•		•			•	•		0.937
	GSVIVG00019395001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_20, whole genome shotg [...] (301 aa)	•		•			•			0.928
	GSVIVG00008901001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (490 aa)			•			•		•	0.903
	GSVIVG00008900001	SubName- Full=Chromosome chr14 scaffold_211, whole genome shotgun sequence; (502 aa)			•			•	•	•	0.903
	GSVIVG00019835001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (495 aa)			•			•	•	•	0.902
	GSVIVG00037913001	SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (231 aa)						•			0.899
	GSVIVG00026409001	RecName- Full=3-phosphoshikimate 1-carboxyvinyltransferase; EC=2.5.1.19; (521 aa)	•	•				•	•		0.729
	GSVIVG00018199001	RecName- Full=Chorismate synthase; EC=4.2.3.5; (348 aa)	•		•				•		0.684
	GSVIVG00024523001	RecName- Full=Chorismate synthase; EC=4.2.3.5; (403 aa)	•		•				•		0.662

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	454
PLN02520	529	PLN02520, PLN02520, bifunctional 3-dehydroquinate	0.0
COG0169	283	COG0169, AroE, Shikimate 5-dehydrogenase [Amino ac	2e-86
PRK00258	278	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewe	1e-74
TIGR00507	270	TIGR00507, aroE, shikimate 5-dehydrogenase	2e-63
PRK12548	289	PRK12548, PRK12548, shikimate 5-dehydrogenase; Pro	2e-47
pfam01487	222	pfam01487, DHquinase_I, Type I 3-dehydroquinase	1e-41
PRK12549	284	PRK12549, PRK12549, shikimate 5-dehydrogenase; Rev	9e-39
PRK09310	477	PRK09310, aroDE, bifunctional 3-dehydroquinate deh	6e-37
cd01065	155	cd01065, NAD_bind_Shikimate_DH, NAD(P) binding dom	2e-35
PRK12550	272	PRK12550, PRK12550, shikimate 5-dehydrogenase; Rev	7e-34
cd00502	225	cd00502, DHQase_I, Type I 3-dehydroquinase, (3-deh	1e-30
PRK12749	288	PRK12749, PRK12749, quinate/shikimate dehydrogenas	2e-30
TIGR01093	228	TIGR01093, aroD, 3-dehydroquinate dehydratase, typ	1e-29
PRK14027	283	PRK14027, PRK14027, quinate/shikimate dehydrogenas	5e-28
pfam08501	83	pfam08501, Shikimate_dh_N, Shikimate dehydrogenase	3e-25
TIGR01809	282	TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase	3e-22
COG0710	231	COG0710, AroD, 3-dehydroquinate dehydratase [Amino	1e-19
PRK02412	253	PRK02412, aroD, 3-dehydroquinate dehydratase; Prov	2e-09
PRK13575	238	PRK13575, PRK13575, 3-dehydroquinate dehydratase;	9e-06
pfam01488	133	pfam01488, Shikimate_DH, Shikimate / quinate 5-deh	6e-05
PRK08324	681	PRK08324, PRK08324, short chain dehydrogenase; Val	8e-05
PRK05872	296	PRK05872, PRK05872, short chain dehydrogenase; Pro	1e-04
TIGR02632	676	TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate	3e-04
PRK06057	255	PRK06057, PRK06057, short chain dehydrogenase; Pro	0.001
PRK05855	582	PRK05855, PRK05855, short chain dehydrogenase; Val	0.002

>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

 Score =  582 bits (1502), Expect = 0.0
 Identities = 252/445 (56%), Positives = 315/445 (70%), Gaps = 5/445 (1%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
           RPKW GG YEGDE+KR +AL LA +LGADYVD ELKVA   +           + IVS +
Sbjct: 84  RPKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSH 143

Query: 67  LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
               TPS E+LG LV+R+QATGADI+K+  +  DIT++AR+FQ+  H QVP I   +GER
Sbjct: 144 NYENTPSVEELGNLVARIQATGADIVKIATTALDITDVARMFQITVHSQVPTIGLVMGER 203

Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           GL+S++L PKF G L +G+L+   V   G PT++ L   Y    I  DTKV+G+I KPVG
Sbjct: 204 GLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIKDLLDLYNFRQIGPDTKVYGIIGKPVG 263

Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSK PILHN  F+ V +NG+YV + VDDL KF  TYSSPDFAGFS   P+KE  +K CDE
Sbjct: 264 HSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDALKCCDE 323

Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           V P+A++I A+NTIIRRPSDGKL+GYNTD   +I+AIED ++       + + GSPLAG+
Sbjct: 324 VDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRA---SGSSPASGSPLAGK 380

Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
           +FV+ GAGGAG+ALA+GAK +GARVVI +  +ERAK LA  V G A    D+ NF PE+G
Sbjct: 381 LFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEG 440

Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
            ILAN T +GM PN D  P+S+  L+ Y LVFDAVYTP+ TRLL++AE +GAIIVSG EM
Sbjct: 441 MILANTTSVGMQPNVDETPISKHALKHYSLVFDAVYTPKITRLLREAEESGAIIVSGTEM 500

Query: 425 FLRQAIGQFNLFTGKEAPKEFMREI 449
           F+RQA  QF  FTG  APKE  REI
Sbjct: 501 FIRQAYEQFERFTGLPAPKELFREI 525

Length = 529

>gnl|CDD|223247 COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

 Score =  265 bits (680), Expect = 2e-86
 Identities = 105/293 (35%), Positives = 152/293 (51%), Gaps = 20/293 (6%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           +N  TK+FG+I  P+ HS  P +HN  FR +  + +Y+   V  +DL +  S   +  F 
Sbjct: 2   MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFR 61

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P+KEA +   DE+ P A+ I AVNT++R   DGKL GYNTD          A+K
Sbjct: 62  GLNVTIPFKEAALPLLDELSPRARLIGAVNTLVRE-DDGKLRGYNTDGIG----FLRALK 116

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASD 345
           E G           + G+  ++ GAGGA RA+AF     GA R+ + +   ERA+ LA D
Sbjct: 117 EFGLPV-------DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELA-D 168

Query: 346 VMGAARPFEDILNFQPEKGA----ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401
           + G      +       +G     +L NATP+GM       PV  E L    +V+D VY 
Sbjct: 169 LFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVYN 228

Query: 402 PRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           P +T LL++A A GA  + G+ M + QA   F L+TG E P + M+E ++   
Sbjct: 229 PLETPLLREARAQGAKTIDGLGMLVHQAAEAFELWTGVEPPVDVMKEALIEAL 281

Length = 283

>gnl|CDD|234703 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed

 Score =  234 bits (600), Expect = 1e-74
 Identities = 95/291 (32%), Positives = 141/291 (48%), Gaps = 20/291 (6%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           I   T+++ +I  P+ HSK P++HN  F+ +  +G+Y+ + V  +DL+     + +    
Sbjct: 1   ITGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGR 60

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P+KEA     DE+   A+ I AVNT++    DG+LIG NTD          A++
Sbjct: 61  GANVTVPFKEAAFALADELSERARLIGAVNTLVLE--DGRLIGDNTD----GIGFVRALE 114

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASD 345
           ER         G  L G+  ++ GAGGA RA+       G A + I +   ERA+ LA  
Sbjct: 115 ERL--------GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELA-K 165

Query: 346 VMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR 403
           + GA    E  L  Q E     ++ NAT  GM       P+    LR   +V+D +Y P 
Sbjct: 166 LFGALGKAELDLELQEELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPL 225

Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
            T  L  A+A GA  + G+ M + QA   F L+TG   P E M   + A  
Sbjct: 226 PTPFLAWAKAQGARTIDGLGMLVHQAAEAFELWTGVRPPVEPMLAALRAAL 276

Length = 278

>gnl|CDD|161904 TIGR00507, aroE, shikimate 5-dehydrogenase

 Score =  206 bits (525), Expect = 2e-63
 Identities = 92/288 (31%), Positives = 145/288 (50%), Gaps = 26/288 (9%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 231
           K++G+I  P+ HSK P++HN  F+ +   G Y+   V  DDL+   S + +  F G +V 
Sbjct: 1   KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVT 60

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+KE   +F DE+   A+   AVNT++    DGKL+GYNTD    ++ +E  I  R  +
Sbjct: 61  SPFKERAFQFLDEIDGRAKLAGAVNTLVLE--DGKLVGYNTDGIGLVSDLEQLIPLRPNQ 118

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
           N              ++ GAGGA +A+A         V+I +    +A+ LA       +
Sbjct: 119 N-------------VLIIGAGGAAKAVALELLKADCNVIIANRTVSKAEELAE----RFQ 161

Query: 352 PFEDILNFQ-----PEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
            + +I  F        +  ++ NAT  GM  N D  PV  E L++ +LV+D VY P +T 
Sbjct: 162 RYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPVPAEYLKEGKLVYDLVYNPLETP 221

Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
            L +A++ G   + G+ M + QA   F L+TG E   E M E +++  
Sbjct: 222 FLAEAKSLGTKTIDGLGMLVYQAALSFELWTGVEPDIEKMFEQLISVL 269

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 270

>gnl|CDD|183585 PRK12548, PRK12548, shikimate 5-dehydrogenase; Provisional

 Score =  164 bits (417), Expect = 2e-47
 Identities = 94/293 (32%), Positives = 138/293 (47%), Gaps = 33/293 (11%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVP--MFVDDLKKFFSTYSSPDFA 226
           I+  T + GLI  PVGHS  P ++N +F+    +  Y+   + VD +        + +  
Sbjct: 5   ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMR 64

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P K    K+ DE+ P A+ I AVNTI+    DGKL G+ TD    +  + +   
Sbjct: 65  GANVTMPCKSEAAKYMDELSPAARIIGAVNTIVN--DDGKLTGHITDGLGFVRNLREH-- 120

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDID---FERAKSL 342
                      G  + G+   + GAGGA  A+       GA+ + IF+I    +ERA+  
Sbjct: 121 -----------GVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDDFYERAEQT 169

Query: 343 ASDVMGAARP--------FEDI--LNFQPEKGAILANATPLGMHPNTDRVPVSEET-LRD 391
           A  +     P          D   L  +     IL NAT +GM PN     + + +  R 
Sbjct: 170 AEKIKQEV-PECIVNVYDLNDTEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVFRK 228

Query: 392 YQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKE 444
             +V D VY P+KT+LL+DAEAAG   V G+ M L Q    + L+TGK+ P E
Sbjct: 229 DLVVADTVYNPKKTKLLEDAEAAGCKTVGGLGMLLWQGAEAYKLYTGKDMPVE 281

Length = 289

>gnl|CDD|216526 pfam01487, DHquinase_I, Type I 3-dehydroquinase

 Score =  147 bits (373), Expect = 1e-41
 Identities = 61/162 (37%), Positives = 86/162 (53%), Gaps = 3/162 (1%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
           R K  GG ++G E + LE L  A  LG DY+D EL  A + L     + + GT+ I+S +
Sbjct: 61  RTKSEGGRFDGSEEEYLELLKEALRLGPDYIDIELSSAPDELLAVIIAKKGGTKIILSYH 120

Query: 67  LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ---VPIIAYSV 123
               TPS EDL  L   MQ  GADI+K+    N I ++ R+ +  S  +    P+IA S+
Sbjct: 121 DFEGTPSWEDLLSLYEEMQKLGADIVKIAVMANSIEDVLRLLRFTSEAKELDKPLIAISM 180

Query: 124 GERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYK 165
           GE G +S++L P F   L Y SL      G  T+E LR+  +
Sbjct: 181 GELGRISRILGPVFGSVLTYASLGKASAPGQITLEELREALE 222

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate giving dehydroshikimate. Dehydroquinase functions in the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Type II 3-dehydroquinase catalyzes the trans-dehydration of 3-dehydroshikimate see pfam01220. Length = 222

>gnl|CDD|183586 PRK12549, PRK12549, shikimate 5-dehydrogenase; Reviewed

 Score =  141 bits (357), Expect = 9e-39
 Identities = 86/236 (36%), Positives = 114/236 (48%), Gaps = 35/236 (14%)

Query: 225 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC----EASITA 280
           FAG ++  P K+AV+   DE+   A+A+ AVNT++ R  DG+ IG+NTD     E+    
Sbjct: 64  FAGLNITHPCKQAVIPHLDELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRG 121

Query: 281 IEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERA 339
           + DA  ER                  V  GAGGAG A+A    + G  R+ IFD+D  RA
Sbjct: 122 LPDASLERV-----------------VQLGAGGAGAAVAHALLTLGVERLTIFDVDPARA 164

Query: 340 KSLASDVMGAARPFEDILNFQPEKGAI-----LANATPLGM--HPNTDRVPVSEETLRDY 392
            +LA D + A  P            A+     L +ATP GM  HP     P+  E LR  
Sbjct: 165 AALA-DELNARFPAARATAGSDLAAALAAADGLVHATPTGMAKHPGL---PLPAELLRPG 220

Query: 393 QLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 448
             V D VY P +T LL+ A A G   + G  M + QA+  F LFTG+E   E M  
Sbjct: 221 LWVADIVYFPLETELLRAARALGCRTLDGGGMAVFQAVDAFELFTGREPDAERMLA 276

Length = 284

>gnl|CDD|137204 PRK09310, aroDE, bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

 Score =  141 bits (356), Expect = 6e-37
 Identities = 115/394 (29%), Positives = 174/394 (44%), Gaps = 38/394 (9%)

Query: 71  TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVS 130
           T   ED+  L + M A+ AD  K+  S +  T++  I               +G  G  S
Sbjct: 112 TSEHEDIIQLYNEMLASAADYYKIAVSSSSSTDLLNIIHQKRSLPENTTVLCMGGMGRPS 171

Query: 131 QLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKG 188
           ++LSP    A  Y +  G P +  G  ++E L   Y   +++A + ++GLI  PV  S  
Sbjct: 172 RILSPLLQNAFNYAAGIGAPPVAPGQLSLEHL-LFYNYANLSAQSPIYGLIGDPVDRSIS 230

Query: 189 PILHNPTFRHVNYNGIYV--PMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH 246
            + HNP F  ++ N  Y+  P+   +L KFFST     F G SV  P K AV+ F D++ 
Sbjct: 231 HLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKTAVLDFLDKLD 290

Query: 247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMF 306
           P  +   + NT++ R  +GK+ GYNTD E   + ++        KN       PL  +  
Sbjct: 291 PSVKLCGSCNTLVFR--NGKIEGYNTDGEGLFSLLKQ-------KN------IPLNNQHV 335

Query: 307 VLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAI 366
            + GAGGA +A+A      GA ++IF+     A++LAS   G A P E +      +  I
Sbjct: 336 AIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELH--RIDI 393

Query: 367 LANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL 426
           + N  P          P           V D    P+ +   + A + G+ I+ G EMF 
Sbjct: 394 IINCLP----------PSVTIPKAFPPCVVDINTLPKHSPYTQYARSQGSSIIYGYEMFA 443

Query: 427 RQAIGQFNL----FTGKEAPKEFMR--EIVLAKF 454
            QA+ QF L       K   K F R    + + F
Sbjct: 444 EQALLQFRLWFPTLLFKHLEKTFRRRVANLASLF 477

Length = 477

>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate dehydrogenase

 Score =  128 bits (324), Expect = 2e-35
 Identities = 56/170 (32%), Positives = 86/170 (50%), Gaps = 18/170 (10%)

Query: 272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVV 330
           TD          A++E          G  L G+  ++ GAGGA RA+A+     GA ++V
Sbjct: 1   TD----GLGFVRALEE---------AGIELKGKKVLILGAGGAARAVAYALAELGAAKIV 47

Query: 331 IFDIDFERAKSLASDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEET 388
           I +   E+AK+LA +  G        L+ +       ++ N TP+GM P  + +P+    
Sbjct: 48  IVNRTLEKAKALA-ERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDE-LPLPPSL 105

Query: 389 LRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 438
           L+   +V+D VY P +T LLK+A A GA  + G+EM + QA   F L+TG
Sbjct: 106 LKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEMLVYQAAEAFELWTG 155

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DHs, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 155

>gnl|CDD|183587 PRK12550, PRK12550, shikimate 5-dehydrogenase; Reviewed

 Score =  127 bits (322), Expect = 7e-34
 Identities = 84/285 (29%), Positives = 127/285 (44%), Gaps = 27/285 (9%)

Query: 168 HINADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFA 226
            IN DT++   L ++P     G   HN  +  +  N +Y      DL        +    
Sbjct: 4   MINKDTQLCISLAARPSNF--GTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIR 61

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P+KEAV+   DE+ P AQAI +VNTI+   +DG L  YNTD      AI   + 
Sbjct: 62  GCAVSMPFKEAVIPLVDELDPSAQAIESVNTIVN--TDGHLKAYNTD----YIAIAKLLA 115

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASD 345
                                L G+GG  +A+A   +  G     I   + +  K+LA +
Sbjct: 116 SYQVPPDLV----------VALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALA-E 164

Query: 346 VMGAARPFEDILNFQPEKGAILANATPLGMH--PNTDRVPVSEETLRDYQLVFDAVYTPR 403
           + G    +E   +    +  IL N TP+GM   P  D++   E  +    +VFD V  P 
Sbjct: 165 LYG----YEWRPDLGGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPA 220

Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 448
           +T L++ A A G  +++G E+   QA+ QF L+TG     E + E
Sbjct: 221 ETPLIRYARARGKTVITGAEVIALQAVEQFVLYTGVRPSDELIAE 265

Length = 272

>gnl|CDD|188633 cd00502, DHQase_I, Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase)

 Score =  117 bits (296), Expect = 1e-30
 Identities = 62/166 (37%), Positives = 89/166 (53%), Gaps = 11/166 (6%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSG-TRFIVSC 65
           R K  GG +EG E + LE L  A  LG DYVD EL   S +L +  +S + G T+ I S 
Sbjct: 63  RTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELD--SALLEELINSRKKGNTKIIGSY 120

Query: 66  NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIAY 121
           +    TPS+E+L   + +M A GADI+K+    N I +  R+ +     +    +P+IA 
Sbjct: 121 HDFSGTPSDEELVSRLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAI 180

Query: 122 SVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVESLRQTYK 165
           ++GE G +S++LSP F   L Y SL     P  G  +VE L+Q   
Sbjct: 181 NMGELGKLSRILSPVFGSPLTYASLPEPSAP--GQLSVEELKQALS 224

Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase). Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism. Length = 225

>gnl|CDD|183721 PRK12749, PRK12749, quinate/shikimate dehydrogenase; Reviewed

 Score =  118 bits (298), Expect = 2e-30
 Identities = 87/301 (28%), Positives = 136/301 (45%), Gaps = 38/301 (12%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 226
           + A  ++ GL++ P+ HS  P + N           Y+   VD+           +    
Sbjct: 3   VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMR 62

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I AI    K
Sbjct: 63  GTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI----K 116

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IF---DIDFERAKSL 342
           E G+          + G+  VL GAGGA  A+       G + + +F   D  F++A + 
Sbjct: 117 ESGFD---------IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 167

Query: 343 ASDV------------MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEET-L 389
           A  V            +   + F + L        IL N T +GM P  +   V++ + L
Sbjct: 168 AQRVNENTDCVVTVTDLADQQAFAEAL----ASADILTNGTKVGMKPLENESLVNDISLL 223

Query: 390 RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
               LV + VY P  T+LL+ A+ AG   + G  M L Q   QF L+TGK+ P E+++++
Sbjct: 224 HPGLLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQV 283

Query: 450 V 450
           +
Sbjct: 284 M 284

Length = 288

>gnl|CDD|233268 TIGR01093, aroD, 3-dehydroquinate dehydratase, type I

 Score =  115 bits (289), Expect = 1e-29
 Identities = 49/165 (29%), Positives = 85/165 (51%), Gaps = 8/165 (4%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQY-SSHQSGTRFIVS 64
           R    GG + G+E + LE L  A D  G D+VD EL +  + + +    + + GT+ I+S
Sbjct: 65  RTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMS 124

Query: 65  CNLDCE-TPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPII 119
              D + TPS E++   + +  + GADI+K+    N   ++  + ++ +       VP+I
Sbjct: 125 -YHDFQKTPSWEEIVERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLI 183

Query: 120 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTY 164
             S+G+RG +S++L   F   L +GSL      G  +V+ LR+  
Sbjct: 184 TMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQISVDDLRELL 228

This model detects 3-dehydroquinate dehydratase, type I, either as a monofunctional protein or as a domain of a larger, multifunctional protein. It is often found fused to shikimate 5-dehydrogenase (EC 1.1.1.25), and sometimes additional domains. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by the model TIGR01088 [Amino acid biosynthesis, Aromatic amino acid family]. Length = 228

>gnl|CDD|172521 PRK14027, PRK14027, quinate/shikimate dehydrogenase; Provisional

 Score =  112 bits (280), Expect = 5e-28
 Identities = 91/303 (30%), Positives = 129/303 (42%), Gaps = 41/303 (13%)

Query: 170 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIY--VPMFVD-----DLKKFFSTYSS 222
             D+ + GLI + +  S+ P +H           +Y  +          DLK        
Sbjct: 1   MNDSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALY 60

Query: 223 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 282
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 61  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVI-DATGHTTGHNTDVSGFGRGME 119

Query: 283 DAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKS 341
           +     G  N              V  GAGG G A+A+   + G  ++ + D+D  RA++
Sbjct: 120 E-----GLPNAKLD--------SVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQA 166

Query: 342 LASDVMGA----------ARPFEDILNFQPEKGAILANATPLGM--HPNTDRVPVSEETL 389
           LA  +  A          AR  ED++      G +  NATP+GM  HP T         L
Sbjct: 167 LADVINNAVGREAVVGVDARGIEDVI--AAADGVV--NATPMGMPAHPGT---AFDVSCL 219

Query: 390 RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
                V D VY P +T LLK A A G   + G  M + QA+  F LFTG E     MRE 
Sbjct: 220 TKDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRET 279

Query: 450 VLA 452
            L+
Sbjct: 280 FLS 282

Length = 283

>gnl|CDD|149523 pfam08501, Shikimate_dh_N, Shikimate dehydrogenase substrate binding domain

 Score = 98.4 bits (246), Expect = 3e-25
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 2/83 (2%)

Query: 178 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYK 235
           LI  P+ HS  P++HN  F+ +  NG+YV   V  D+L +F     +  F G +V  P+K
Sbjct: 1   LIGNPISHSLSPLIHNAAFKALGLNGVYVAFEVPPDNLPEFVEGLRALGFRGLNVTIPHK 60

Query: 236 EAVMKFCDEVHPLAQAIAAVNTI 258
           EA +   DE+ P A+ I AVNTI
Sbjct: 61  EAAIPLLDELSPEAKRIGAVNTI 83

This domain is the substrate binding domain of shikimate dehydrogenase. Length = 83

>gnl|CDD|233580 TIGR01809, Shik-DH-AROM, shikimate-5-dehydrogenase, fungal AROM-type

 Score = 95.8 bits (238), Expect = 3e-22
 Identities = 84/298 (28%), Positives = 114/298 (38%), Gaps = 50/298 (16%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD---LKKFFSTYSSPDFAGFSV 230
           K   +I KP+ HS+ P LHN  +  +                LK+  S +  P F G SV
Sbjct: 6   KKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASV 64

Query: 231 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 290
             P K A+++F DE    A  I +VNT++R   +G   G NTD       I  A+   G 
Sbjct: 65  TIPLKFAILRFADEHTDRASLIGSVNTLLRT-QNGIWKGDNTD----WDGIAGALANIGK 119

Query: 291 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
                    PLAG   ++ GAGG  RA  +   S G    I  I+  R     S      
Sbjct: 120 F-------EPLAGFRGLVIGAGGTSRAAVYALASLGVT-DITVIN--RNPDKLS------ 163

Query: 351 RPFEDILNFQPEKGAILANATPLGMHPNTD-RVPVS---EETLRDYQLVF---------- 396
               D+                 G+       V VS    +   DY  +F          
Sbjct: 164 -RLVDLGV--QVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPFLLLKR 220

Query: 397 --------DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFM 446
                   DA Y P  T L+    AAG  ++SG++M L Q   QF  +TG  AP+E M
Sbjct: 221 KSSEGIFLDAAYDPWPTPLVAIVSAAGWRVISGLQMLLHQGFAQFEQWTGMPAPREAM 278

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway [Amino acid biosynthesis, Aromatic amino acid family]. Length = 282

>gnl|CDD|223782 COG0710, AroD, 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

 Score = 87.0 bits (216), Expect = 1e-19
 Identities = 43/168 (25%), Positives = 77/168 (45%), Gaps = 5/168 (2%)

Query: 7   RPKWAGGLYEGDEHKRLEALH-LAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 65
           R    GG + G E + +E L  LAE  G DY+D EL    + + +     +     IVS 
Sbjct: 65  RTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFAKK-HGVIVSY 123

Query: 66  NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQV---PIIAYS 122
           +   +TP  E++   + +M++ GADI+K+        ++  + +     +    P+I  S
Sbjct: 124 HDFEKTPPLEEIIERLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVITIS 183

Query: 123 VGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 170
           +G+ G +S++  P F   + Y SL      G  +V+ LR+   +    
Sbjct: 184 MGKTGKISRVAGPVFGSPITYASLDKPSAPGQISVDELRKILTLLGYI 231

Length = 231

>gnl|CDD|235036 PRK02412, aroD, 3-dehydroquinate dehydratase; Provisional

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 17/163 (10%)

Query: 12  GGLYEGDEHKRLEALHLAEDLGA-DYVDFELKVASNILGKQYS-SHQSGTRFIVSC-NLD 68
           GG     + + L  +      G  DY+D EL    +++ +  + +H+ G + ++S  + +
Sbjct: 87  GGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFE 146

Query: 69  CETPSEEDLGYLVSRMQATGADIIKL---------VFSVNDITEIARIFQLLSHCQVPII 119
            +TP +E++   + +M++ GADI+K+         V ++ + T   +          P+I
Sbjct: 147 -KTPPKEEIVERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYA----DQPLI 201

Query: 120 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQ 162
             S+G+ G +S+L    F  +  + SL      G  +VE LR+
Sbjct: 202 TMSMGKLGRISRLAGEVFGSSWTFASLDKASAPGQISVEDLRR 244

Length = 253

>gnl|CDD|184156 PRK13575, PRK13575, 3-dehydroquinate dehydratase; Provisional

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 37/152 (24%), Positives = 64/152 (42%), Gaps = 9/152 (5%)

Query: 7   RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFI 62
           R K  GG  +      L  L  LA   G D +D E +   +I   Q       Q     +
Sbjct: 70  RTKLQGGYGQFTNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVV 129

Query: 63  VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS----HCQVPI 118
           +S +    TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S         +
Sbjct: 130 ISHHNFESTPPLDELKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV 189

Query: 119 IAYSVGERGLVSQLLSPKFNGALVYGSLKGTP 150
           +  S+ + GL+S+     F GAL YG + G P
Sbjct: 190 VGISMSKLGLISRTAQGVFGGALSYGCI-GEP 220

Length = 238

>gnl|CDD|216527 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 4/77 (5%)

Query: 298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFERAKSLASDVMGA--ARPFE 354
              L G+  +L GAG   R  A    S+GA+ + I +   E+AK LA +      A P +
Sbjct: 7   FGDLKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFPVGGEALPLD 66

Query: 355 DILNFQPEKGAILANAT 371
           ++     E   I+ +AT
Sbjct: 67  ELEELLAE-ADIVISAT 82

This family contains both shikimate and quinate dehydrogenases. Shikimate 5-dehydrogenase catalyzes the conversion of shikimate to 5-dehydroshikimate. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids. Quinate 5-dehydrogenase catalyzes the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites 3-dehydroquinate and dehydroshikimate. Length = 133

>gnl|CDD|236241 PRK08324, PRK08324, short chain dehydrogenase; Validated

 Score = 44.8 bits (107), Expect = 8e-05
 Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 300 PLAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
           PLAG++  V   AGG G+A A    + GA VV+ D+D E A++ A+++ G  R
Sbjct: 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDR 471

Length = 681

>gnl|CDD|235633 PRK05872, PRK05872, short chain dehydrogenase; Provisional

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 295 ASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
               + LAG++ V+ GA  G G  LA    +RGA++ + D++     +LA+++ G  R  
Sbjct: 1   GPPMTSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVL 60

Query: 354 E 354
            
Sbjct: 61  T 61

Length = 296

>gnl|CDD|131680 TIGR02632, RhaD_aldol-ADH, rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 20/119 (16%)

Query: 300 PLAGRM-FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-----MGAARPF 353
            LA R+ FV  GAGG GR  A    + GA VV+ D++ E A+++A+++      G A   
Sbjct: 411 TLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVAL 470

Query: 354 E-DILNFQPEKGAILANATPLGMHPNTDRV----------PVSEETLRDYQLVFDAVYT 401
           + D+ + Q  K A    A   G     D V          P  E TL+++QL  D + T
Sbjct: 471 KMDVTDEQAVKAAFADVALAYG---GVDIVVNNAGIATSSPFEETTLQEWQLNLDILAT 526

Length = 676

>gnl|CDD|180371 PRK06057, PRK06057, short chain dehydrogenase; Provisional

 Score = 40.1 bits (94), Expect = 0.001
 Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 348
           LAGR+ V+ G G G G A A    + GA VV+ DID E  K+ A +V G
Sbjct: 5   LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGG 53

Length = 255

>gnl|CDD|235628 PRK05855, PRK05855, short chain dehydrogenase; Validated

 Score = 40.0 bits (94), Expect = 0.002
 Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
           P +G++ V+ GAG G GR  A      GA VV  DID   A+  A  +
Sbjct: 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELI 359

Length = 582

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	454
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	100.0
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	100.0
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	100.0
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	100.0
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	100.0
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	100.0
PRK12548	289	shikimate 5-dehydrogenase; Provisional	100.0
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	100.0
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	100.0
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	100.0
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	100.0
PRK13575	238	3-dehydroquinate dehydratase; Provisional	100.0
COG0710	231	AroD 3-dehydroquinate dehydratase [Amino acid tran	100.0
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	100.0
TIGR01093	228	aroD 3-dehydroquinate dehydratase, type I. Type II	100.0
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	100.0
PF01487	224	DHquinase_I: Type I 3-dehydroquinase; InterPro: IP	100.0
PRK13576	216	3-dehydroquinate dehydratase; Provisional	100.0
KOG0692	595	consensus Pentafunctional AROM protein [Amino acid	100.0
PRK01261	229	aroD 3-dehydroquinate dehydratase; Provisional	100.0
PF08501	83	Shikimate_dh_N: Shikimate dehydrogenase substrate	99.95
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	99.93
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	99.92
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	99.68
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	99.64
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	99.6
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.48
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	99.38
PRK08291	330	ectoine utilization protein EutC; Validated	99.37
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.3
PRK13940	414	glutamyl-tRNA reductase; Provisional	99.27
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	99.27
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	99.24
PLN00203	519	glutamyl-tRNA reductase	98.85
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.81
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.74
PRK06141	314	ornithine cyclodeaminase; Validated	98.72
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	98.66
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.63
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.59
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.55
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.52
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.49
PRK08618	325	ornithine cyclodeaminase; Validated	98.47
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.46
PRK07340	304	ornithine cyclodeaminase; Validated	98.43
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.39
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.37
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.36
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.35
PRK14982	340	acyl-ACP reductase; Provisional	98.31
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.31
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.3
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.25
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.24
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	98.21
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.21
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.19
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.18
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	98.18
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.16
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.14
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.14
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.12
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	98.11
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	98.11
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	98.1
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.09
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.09
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	98.08
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.06
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	98.05
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.03
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.97
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
PLN02928	347	oxidoreductase family protein	97.95
PRK06046	326	alanine dehydrogenase; Validated	97.94
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.94
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.9
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.87
PRK13243	333	glyoxylate reductase; Reviewed	97.84
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.83
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.8
PRK06823	315	ornithine cyclodeaminase; Validated	97.79
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.78
PRK06407	301	ornithine cyclodeaminase; Provisional	97.76
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	97.75
PRK06199	379	ornithine cyclodeaminase; Validated	97.71
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.71
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	97.7
COG0300	265	DltE Short-chain dehydrogenases of various substra	97.7
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	97.69
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.67
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.67
PRK07589	346	ornithine cyclodeaminase; Validated	97.65
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.64
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.64
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.63
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.63
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.62
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.61
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.61
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.59
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.58
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.57
KOG0409	327	consensus Predicted dehydrogenase [General functio	97.57
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.57
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.56
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	97.56
PRK12480	330	D-lactate dehydrogenase; Provisional	97.56
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.53
PRK08328	231	hypothetical protein; Provisional	97.53
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.51
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.49
PRK06436	303	glycerate dehydrogenase; Provisional	97.47
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	97.47
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.46
PRK08655	437	prephenate dehydrogenase; Provisional	97.45
PRK08605	332	D-lactate dehydrogenase; Validated	97.44
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	97.43
PRK07574	385	formate dehydrogenase; Provisional	97.43
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	97.42
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	97.42
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.41
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.41
PRK05479	330	ketol-acid reductoisomerase; Provisional	97.39
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.38
PLN03139	386	formate dehydrogenase; Provisional	97.37
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.37
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.36
PRK07417	279	arogenate dehydrogenase; Reviewed	97.35
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	97.35
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.33
COG4221	246	Short-chain alcohol dehydrogenase of unknown speci	97.33
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	97.33
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.31
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	97.31
PLN02256	304	arogenate dehydrogenase	97.3
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	97.29
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.29
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	97.27
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	97.27
PLN02494	477	adenosylhomocysteinase	97.24
PRK06487	317	glycerate dehydrogenase; Provisional	97.23
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.22
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.22
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.22
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	97.21
PLN02712	667	arogenate dehydrogenase	97.2
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	97.2
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.2
PRK06932	314	glycerate dehydrogenase; Provisional	97.18
PRK13403	335	ketol-acid reductoisomerase; Provisional	97.18
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.17
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.16
PLN02306	386	hydroxypyruvate reductase	97.16
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	97.15
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.14
PLN02712	667	arogenate dehydrogenase	97.13
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.13
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	97.13
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.1
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.09
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	97.08
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	97.08
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	97.07
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.07
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.06
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.05
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	97.05
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.04
PRK06545	359	prephenate dehydrogenase; Validated	97.04
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.03
PRK05872	296	short chain dehydrogenase; Provisional	97.0
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.0
PRK05866	293	short chain dehydrogenase; Provisional	96.99
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	96.99
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	96.99
PRK07060	245	short chain dehydrogenase; Provisional	96.97
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	96.96
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	96.95
PRK08265	261	short chain dehydrogenase; Provisional	96.93
PRK06139	330	short chain dehydrogenase; Provisional	96.92
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.92
KOG1208	314	consensus Dehydrogenases with different specificit	96.91
PRK08223	287	hypothetical protein; Validated	96.9
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.87
PRK06196	315	oxidoreductase; Provisional	96.87
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.87
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.86
PLN03209	576	translocon at the inner envelope of chloroplast su	96.86
PRK06200	263	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog	96.85
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	96.85
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.85
PRK08507	275	prephenate dehydrogenase; Validated	96.84
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	96.83
TIGR03325	262	BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro	96.83
KOG1200	256	consensus Mitochondrial/plastidial beta-ketoacyl-A	96.83
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	96.83
KOG1205	282	consensus Predicted dehydrogenase [Secondary metab	96.82
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.81
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	96.81
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.81
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.8
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.8
PRK06057	255	short chain dehydrogenase; Provisional	96.8
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	96.79
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.79
KOG3007	333	consensus Mu-crystallin [Amino acid transport and	96.77
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.76
PRK15116	268	sulfur acceptor protein CsdL; Provisional	96.7
PRK08818	370	prephenate dehydrogenase; Provisional	96.7
PRK06505	271	enoyl-(acyl carrier protein) reductase; Provisiona	96.69
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.66
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.66
PRK07680	273	late competence protein ComER; Validated	96.65
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	96.64
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.63
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	96.62
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	96.62
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.61
KOG0172	445	consensus Lysine-ketoglutarate reductase/saccharop	96.61
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.61
PLN02688	266	pyrroline-5-carboxylate reductase	96.61
PRK08862	227	short chain dehydrogenase; Provisional	96.61
PRK06500	249	short chain dehydrogenase; Provisional	96.58
PRK06079	252	enoyl-(acyl carrier protein) reductase; Provisiona	96.58
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.57
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.57
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.55
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.55
PRK08339	263	short chain dehydrogenase; Provisional	96.55
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.53
PRK08415	274	enoyl-(acyl carrier protein) reductase; Provisiona	96.51
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.5
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.5
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	96.5
PRK05867	253	short chain dehydrogenase; Provisional	96.49
PRK07523	255	gluconate 5-dehydrogenase; Provisional	96.49
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	96.48
PRK07533	258	enoyl-(acyl carrier protein) reductase; Provisiona	96.47
KOG1014	312	consensus 17 beta-hydroxysteroid dehydrogenase typ	96.46
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.46
PRK05854	313	short chain dehydrogenase; Provisional	96.46
PLN02858	1378	fructose-bisphosphate aldolase	96.45
PRK08159	272	enoyl-(acyl carrier protein) reductase; Provisiona	96.45
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.44
PRK07424	406	bifunctional sterol desaturase/short chain dehydro	96.44
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.43
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.42
PRK05993	277	short chain dehydrogenase; Provisional	96.41
KOG0725	270	consensus Reductases with broad range of substrate	96.41
PRK08594	257	enoyl-(acyl carrier protein) reductase; Provisiona	96.4
PRK12742	237	oxidoreductase; Provisional	96.39
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.39
PRK06182	273	short chain dehydrogenase; Validated	96.38
PRK05717	255	oxidoreductase; Validated	96.35
PRK07889	256	enoyl-(acyl carrier protein) reductase; Provisiona	96.35
PRK06949	258	short chain dehydrogenase; Provisional	96.34
PRK08277	278	D-mannonate oxidoreductase; Provisional	96.33
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.32
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	96.32
PLN02858	1378	fructose-bisphosphate aldolase	96.31
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	96.29
PRK06180	277	short chain dehydrogenase; Provisional	96.28
PRK12367	245	short chain dehydrogenase; Provisional	96.28
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.27
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.27
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.26
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.25
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.24
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	96.22
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	96.2
PRK12936	245	3-ketoacyl-(acyl-carrier-protein) reductase NodG;	96.2
PLN02477	410	glutamate dehydrogenase	96.19
PRK06603	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.19
PRK07411	390	hypothetical protein; Validated	96.19
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.17
PRK07825	273	short chain dehydrogenase; Provisional	96.17
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.17
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.17
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	96.16
PRK08085	254	gluconate 5-dehydrogenase; Provisional	96.15
PRK09291	257	short chain dehydrogenase; Provisional	96.15
PRK09186	256	flagellin modification protein A; Provisional	96.1
PRK08703	239	short chain dehydrogenase; Provisional	96.1
PRK08690	261	enoyl-(acyl carrier protein) reductase; Provisiona	96.09
KOG1207	245	consensus Diacetyl reductase/L-xylulose reductase	96.09
PLN02780	320	ketoreductase/ oxidoreductase	96.09
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.09
PRK07063	260	short chain dehydrogenase; Provisional	96.09
PRK07774	250	short chain dehydrogenase; Provisional	96.07
PRK06125	259	short chain dehydrogenase; Provisional	96.07
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.07
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	96.06
PRK07478	254	short chain dehydrogenase; Provisional	96.05
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.04
PRK09414	445	glutamate dehydrogenase; Provisional	96.04
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	96.03
COG3967	245	DltE Short-chain dehydrogenase involved in D-alani	96.03
PRK12481	251	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	96.03
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.02
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.02
PRK07062	265	short chain dehydrogenase; Provisional	96.02
PRK06484	520	short chain dehydrogenase; Validated	96.01
PRK06172	253	short chain dehydrogenase; Provisional	96.01
PRK06997	260	enoyl-(acyl carrier protein) reductase; Provisiona	96.0
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	96.0
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.99
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	95.98
PRK06720	169	hypothetical protein; Provisional	95.97
PRK06484	520	short chain dehydrogenase; Validated	95.96
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.96
PRK06124	256	gluconate 5-dehydrogenase; Provisional	95.96
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	95.95
PRK10538	248	malonic semialdehyde reductase; Provisional	95.93
PRK09242	257	tropinone reductase; Provisional	95.93
PRK09496	453	trkA potassium transporter peripheral membrane com	95.93
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.92
PRK06197	306	short chain dehydrogenase; Provisional	95.9
PRK08324	681	short chain dehydrogenase; Validated	95.89
TIGR03589	324	PseB UDP-N-acetylglucosamine 4,6-dehydratase. This	95.87
PRK07035	252	short chain dehydrogenase; Provisional	95.87
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	95.85
PRK05653	246	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.84
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	95.84
PRK07890	258	short chain dehydrogenase; Provisional	95.82
PRK07067	257	sorbitol dehydrogenase; Provisional	95.82
PRK07097	265	gluconate 5-dehydrogenase; Provisional	95.82
COG5322	351	Predicted dehydrogenase [General function predicti	95.81
PRK08589	272	short chain dehydrogenase; Validated	95.81
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	95.8
PRK07453	322	protochlorophyllide oxidoreductase; Validated	95.79
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.79
PRK07831	262	short chain dehydrogenase; Provisional	95.79
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.79
PRK14030	445	glutamate dehydrogenase; Provisional	95.77
PRK13394	262	3-hydroxybutyrate dehydrogenase; Provisional	95.76
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.76
PRK06194	287	hypothetical protein; Provisional	95.73
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	95.71
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	95.7
PRK14031	444	glutamate dehydrogenase; Provisional	95.69
PRK07326	237	short chain dehydrogenase; Provisional	95.69
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	95.69
PRK07814	263	short chain dehydrogenase; Provisional	95.68
PRK06483	236	dihydromonapterin reductase; Provisional	95.67
PRK05876	275	short chain dehydrogenase; Provisional	95.67
PRK09496	453	trkA potassium transporter peripheral membrane com	95.67
PRK07576	264	short chain dehydrogenase; Provisional	95.66
PRK06138	252	short chain dehydrogenase; Provisional	95.66
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.64
PRK12939	250	short chain dehydrogenase; Provisional	95.63
PRK09072	263	short chain dehydrogenase; Provisional	95.63
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	95.63
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	95.62
COG1179	263	Dinucleotide-utilizing enzymes involved in molybdo	95.62
PLN02253	280	xanthoxin dehydrogenase	95.61
PRK05875	276	short chain dehydrogenase; Provisional	95.61
TIGR02632	676	RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc	95.59
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	95.59
PRK05693	274	short chain dehydrogenase; Provisional	95.56
PRK12829	264	short chain dehydrogenase; Provisional	95.56
PRK08643	256	acetoin reductase; Validated	95.55
PRK07109	334	short chain dehydrogenase; Provisional	95.55
PRK07454	241	short chain dehydrogenase; Provisional	95.52
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	95.5
PRK06482	276	short chain dehydrogenase; Provisional	95.5
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.5
PRK07677	252	short chain dehydrogenase; Provisional	95.5
PRK06935	258	2-deoxy-D-gluconate 3-dehydrogenase; Provisional	95.5
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.49
PRK14851	679	hypothetical protein; Provisional	95.48
PLN02989	325	cinnamyl-alcohol dehydrogenase family protein	95.48
PRK06940	275	short chain dehydrogenase; Provisional	95.48
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	95.46
PRK08263	275	short chain dehydrogenase; Provisional	95.45
PRK07666	239	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.44
PRK08303	305	short chain dehydrogenase; Provisional	95.44
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.42
TIGR03206	250	benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr	95.42
PTZ00117	319	malate dehydrogenase; Provisional	95.41
PRK12828	239	short chain dehydrogenase; Provisional	95.41
PRK05884	223	short chain dehydrogenase; Provisional	95.4
PRK07201	657	short chain dehydrogenase; Provisional	95.39
PRK08177	225	short chain dehydrogenase; Provisional	95.38
PRK06113	255	7-alpha-hydroxysteroid dehydrogenase; Validated	95.38
PRK08251	248	short chain dehydrogenase; Provisional	95.38
PRK08416	260	7-alpha-hydroxysteroid dehydrogenase; Provisional	95.37
PLN02730	303	enoyl-[acyl-carrier-protein] reductase	95.35
PRK06101	240	short chain dehydrogenase; Provisional	95.34
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	95.33
PRK12862	763	malic enzyme; Reviewed	95.32
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	95.31
PRK08267	260	short chain dehydrogenase; Provisional	95.31
PRK08213	259	gluconate 5-dehydrogenase; Provisional	95.31
PRK07074	257	short chain dehydrogenase; Provisional	95.27
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.26
PRK07024	257	short chain dehydrogenase; Provisional	95.25
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.24
PRK12429	258	3-hydroxybutyrate dehydrogenase; Provisional	95.24
PRK05579	399	bifunctional phosphopantothenoylcysteine decarboxy	95.23
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	95.22
PLN02896	353	cinnamyl-alcohol dehydrogenase	95.21
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.21
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	95.21
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	95.19
PRK08628	258	short chain dehydrogenase; Provisional	95.19
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	95.19
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	95.18
PRK08017	256	oxidoreductase; Provisional	95.1
PRK06914	280	short chain dehydrogenase; Provisional	95.1
TIGR01289	314	LPOR light-dependent protochlorophyllide reductase	95.09
PRK06179	270	short chain dehydrogenase; Provisional	95.08
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	95.07
cd01484	234	E1-2_like Ubiquitin activating enzyme (E1), repeat	95.04
PRK08340	259	glucose-1-dehydrogenase; Provisional	95.03
PRK07791	286	short chain dehydrogenase; Provisional	95.03
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	95.02
PRK05565	247	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	95.01
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	94.98
PRK07792	306	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.96
PRK07102	243	short chain dehydrogenase; Provisional	94.96
PRK06841	255	short chain dehydrogenase; Provisional	94.93
PRK05225	487	ketol-acid reductoisomerase; Validated	94.91
PRK12823	260	benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat	94.9
PRK13303	265	L-aspartate dehydrogenase; Provisional	94.85
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.84
PRK08261	450	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.84
PRK05599	246	hypothetical protein; Provisional	94.84
CHL00194	317	ycf39 Ycf39; Provisional	94.83
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	94.81
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	94.8
PRK12384	259	sorbitol-6-phosphate dehydrogenase; Provisional	94.79
PRK06463	255	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.79
PRK07806	248	short chain dehydrogenase; Provisional	94.78
PLN02986	322	cinnamyl-alcohol dehydrogenase family protein	94.77
PRK06114	254	short chain dehydrogenase; Provisional	94.74
PRK06181	263	short chain dehydrogenase; Provisional	94.72
PRK06223	307	malate dehydrogenase; Reviewed	94.71
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	94.68
PRK06198	260	short chain dehydrogenase; Provisional	94.68
PLN02602	350	lactate dehydrogenase	94.67
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	94.66
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	94.66
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	94.64
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	94.64
TIGR01963	255	PHB_DH 3-hydroxybutyrate dehydrogenase. This model	94.6
PRK10637	457	cysG siroheme synthase; Provisional	94.59
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	94.58
PRK07904	253	short chain dehydrogenase; Provisional	94.57
PRK06523	260	short chain dehydrogenase; Provisional	94.51
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.49
PLN02586	360	probable cinnamyl alcohol dehydrogenase	94.49
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	94.46
TIGR02622	349	CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member	94.44
PLN02214	342	cinnamoyl-CoA reductase	94.43
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	94.39
PRK08063	250	enoyl-(acyl carrier protein) reductase; Provisiona	94.37
PRK11730	715	fadB multifunctional fatty acid oxidation complex	94.35
PRK08264	238	short chain dehydrogenase; Validated	94.35
TIGR02415	254	23BDH acetoin reductases. One member of this famil	94.34
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.33
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	94.33
PRK08936	261	glucose-1-dehydrogenase; Provisional	94.32
PRK12747	252	short chain dehydrogenase; Provisional	94.31
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	94.29
PRK08642	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.29
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	94.25
PRK10669	558	putative cation:proton antiport protein; Provision	94.24
PRK05086	312	malate dehydrogenase; Provisional	94.2
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	94.2
PRK05650	270	short chain dehydrogenase; Provisional	94.18
PRK07832	272	short chain dehydrogenase; Provisional	94.17
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	94.17
PRK06924	251	short chain dehydrogenase; Provisional	94.16
PRK12746	254	short chain dehydrogenase; Provisional	94.16
PRK07775	274	short chain dehydrogenase; Provisional	94.13
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.13
COG3268	382	Uncharacterized conserved protein [Function unknow	94.11
PRK05855	582	short chain dehydrogenase; Validated	94.1
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	94.09
PRK06300	299	enoyl-(acyl carrier protein) reductase; Provisiona	94.07
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.06
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	94.03
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	94.02
PRK06398	258	aldose dehydrogenase; Validated	94.01
PLN02650	351	dihydroflavonol-4-reductase	94.01
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	94.0
KOG0089	309	consensus Methylenetetrahydrofolate dehydrogenase/	94.0
PRK08226	263	short chain dehydrogenase; Provisional	93.97

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=100.00  E-value=4.5e-112  Score=896.44  Aligned_cols=448  Identities=56%  Similarity=0.925  Sum_probs=408.4

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL   80 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~   80 (454)
                      |+|||+|+++|||.|++++++|+++|+.+++.+++|||||++.+++..+.+...+..++++|+|||||++||+.++|.++
T Consensus        78 plI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiEl~~~~~~~~~~~~~~~~~~~vI~S~H~f~~tP~~~el~~~  157 (529)
T PLN02520         78 PTLVTYRPKWEGGQYEGDENKRQDALRLAMELGADYVDVELKVAHEFINSISGKKPEKCKVIVSSHNYENTPSVEELGNL  157 (529)
T ss_pred             cEEEEeccHHHCCCCCCCHHHHHHHHHHHHHhCCCEEEEEcCCchhHHHHHHhhhhcCCEEEEEecCCCCCCCHHHHHHH
Confidence            89999999999999999999999999999999999999999998866666655666899999999999999999999999


Q ss_pred             HHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCC--CCCCCCCChH
Q 012866           81 VSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVE  158 (454)
Q Consensus        81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~--~~ApGQ~~~~  158 (454)
                      +++|.++||||+|||+||++.+|++++++++.+.+.|+|+||||+.|++||+++++|||++||++++.  ++||||++++
T Consensus       158 ~~~~~~~gaDi~Kia~~~~~~~D~~~ll~~~~~~~~p~i~~~MG~~G~~sRi~~~~~GS~lTy~~~~~~~~sAPGQ~~~~  237 (529)
T PLN02520        158 VARIQATGADIVKIATTALDITDVARMFQITVHSQVPTIGLVMGERGLISRILCPKFGGYLTFGTLEAGKVSAPGQPTIK  237 (529)
T ss_pred             HHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhhcCCCEEEEecCCCCchheecccccCCceeeeecCcccccCCCCCCHH
Confidence            99999999999999999999999999999887788999999999999999999999999999999874  5999999999


Q ss_pred             hhhhhccccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHH
Q 012866          159 SLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAV  238 (454)
Q Consensus       159 ~l~~~~~~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v  238 (454)
                      ++++++++.+++++|++|||||+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||+++
T Consensus       238 ~l~~~~~~~~~~~~t~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~l~~~~~~l~~~~~~G~nVTiP~K~~v  317 (529)
T PLN02520        238 DLLDLYNFRQIGPDTKVYGIIGKPVGHSKSPILHNEAFKSVGFNGVYVHLLVDDLAKFLQTYSSPDFAGFSCTIPHKEDA  317 (529)
T ss_pred             HHHHHhhhhcccCCceEEEEEcCCcccccCHHHHHHHHHHCCCCcEEEEeehhhHHHHHHHHhhCCCCEEEECcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHH
Q 012866          239 MKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRAL  318 (454)
Q Consensus       239 ~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai  318 (454)
                      ++++|++|+.|+.+||||||++++++|+|+||||||.||+.+|++.+...+..   +..+..+++|+++|+|+||+|+++
T Consensus       318 ~~~lD~~~~~A~~iGAVNTvv~~~~~g~l~G~NTD~~G~~~~l~~~~~~~~~~---~~~~~~~~~k~vlIlGaGGagrAi  394 (529)
T PLN02520        318 LKCCDEVDPIAKSIGAINTIIRRPSDGKLVGYNTDYIGAISAIEDGLRASGSS---PASGSPLAGKLFVVIGAGGAGKAL  394 (529)
T ss_pred             HHHhccCCHHHHHhCCceEEEEeCCCCEEEEEcccHHHHHHHHHhhhcccccc---cccccCCCCCEEEEECCcHHHHHH
Confidence            99999999999999999999986227899999999999999997643210000   001245778999999999999999


Q ss_pred             HHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE
Q 012866          319 AFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA  398 (454)
Q Consensus       319 ~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~  398 (454)
                      +++|++.|++|+++||+.++++++++.++.....++++.+.....+|+||||||+||.|..+..|++.+++++..+|+|+
T Consensus       395 a~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm~~~~~~~pl~~~~l~~~~~v~D~  474 (529)
T PLN02520        395 AYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGMQPNVDETPISKHALKHYSLVFDA  474 (529)
T ss_pred             HHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCCCCCCCCCcccHhhCCCCCEEEEe
Confidence            99999999999999999999999999886544555554331234579999999999998777778888889999999999


Q ss_pred             ecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 012866          399 VYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL  451 (454)
Q Consensus       399 ~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~  451 (454)
                      +|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.
T Consensus       475 vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~l~  527 (529)
T PLN02520        475 VYTPKITRLLREAEESGAIIVSGTEMFIRQAYEQFERFTGLPAPKELFREIMS  527 (529)
T ss_pred             ccCCCcCHHHHHHHHCCCeEeCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998764

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=100.00  E-value=1.2e-97  Score=778.33  Aligned_cols=407  Identities=27%  Similarity=0.418  Sum_probs=368.6

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL   80 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~   80 (454)
                      ||+ |+|+++     ++++++|+++|+.++++|+||||||++.+++.++++... ++++|+|+|||||+.    +++.++
T Consensus        53 pil-T~R~~~-----~~~~~~~~~~l~~~~~~~~d~vDiEl~~~~~~~~~l~~~-~~~~kvI~S~Hdf~~----~~l~~~  121 (477)
T PRK09310         53 PIL-TWKKHE-----SCSQAAWIDKMQSLAKLNPNYLDIDKDFPKEALIRIRKL-HPKIKIILSYHTSEH----EDIIQL  121 (477)
T ss_pred             ceE-EeccCc-----cCCHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHh-CCCCEEEEEcCCCCc----chHHHH
Confidence            454 999988     468899999999999999999999999988888777544 359999999999942    579999


Q ss_pred             HHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCC--CCCCCCCChH
Q 012866           81 VSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG--TPVLGLPTVE  158 (454)
Q Consensus        81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~--~~ApGQ~~~~  158 (454)
                      +++|.++||||+|||+||++.+|+++++++++..+.|+|+||||+.|++||+++++|||++||+++..  ++||||++++
T Consensus       122 ~~~~~~~gaDi~Kia~~a~~~~D~l~ll~~~~~~~~p~i~i~MG~~G~~SRil~~~~gS~~Tfa~~~~~~~~APGQi~~~  201 (477)
T PRK09310        122 YNEMLASAADYYKIAVSSSSSTDLLNIIHQKRSLPENTTVLCMGGMGRPSRILSPLLQNAFNYAAGIGAPPVAPGQLSLE  201 (477)
T ss_pred             HHHHHHcCCCEEEEeeCCCCHHHHHHHHHHHhhCCCCEEEEEeCCCchHHhhcchhhcCccccccccCccccCCCCcCHH
Confidence            99999999999999999999999999999988888899999999999999999999999999999865  4799999999


Q ss_pred             hhhhhccccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchH
Q 012866          159 SLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKE  236 (454)
Q Consensus       159 ~l~~~~~~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~  236 (454)
                      ++. .|++.+++++|++|||+|+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++.++|.|+|||||||+
T Consensus       202 ~l~-~~~~~~~~~~t~~~~liG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~  280 (477)
T PRK09310        202 HLL-FYNYANLSAQSPIYGLIGDPVDRSISHLSHNPLFSQLSLNCPYIKLPLTPQELPKFFSTIRDLPFLGLSVTMPLKT  280 (477)
T ss_pred             HHH-hcchhccCCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECccCHH
Confidence            998 5789999999999999999999999999999999999999999999984  7999999999999999999999999


Q ss_pred             HHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHH
Q 012866          237 AVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGR  316 (454)
Q Consensus       237 ~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~ar  316 (454)
                      +|+++||++|+.|+.+||||||+++  +|+|+||||||.||+.+|++.             +..+++++++|+|+||+|+
T Consensus       281 ~v~~~~d~~~~~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlIiGaGgiG~  345 (477)
T PRK09310        281 AVLDFLDKLDPSVKLCGSCNTLVFR--NGKIEGYNTDGEGLFSLLKQK-------------NIPLNNQHVAIVGAGGAAK  345 (477)
T ss_pred             HHHHHhccCCHHHHHhCcceEEEee--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEEcCcHHHH
Confidence            9999999999999999999999987  899999999999999998642             2456789999999999999


Q ss_pred             HHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEE
Q 012866          317 ALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF  396 (454)
Q Consensus       317 ai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~  396 (454)
                      ++++.|.+.|++|+++||+.++++++++.++....+++++.+  ..++|+||||||.||.       ++. .+.  .+|+
T Consensus       346 aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~--l~~~DiVInatP~g~~-------~~~-~l~--~~v~  413 (477)
T PRK09310        346 AIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE--LHRIDIIINCLPPSVT-------IPK-AFP--PCVV  413 (477)
T ss_pred             HHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc--cCCCCEEEEcCCCCCc-------chh-HHh--hhEE
Confidence            999999999999999999999999999887654445555443  3578999999999972       222 233  3899


Q ss_pred             EEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHH
Q 012866          397 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFM  446 (454)
Q Consensus       397 D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~  446 (454)
                      |++|+|.+|+|+++|+++||++++|++||++||+.||++|||.+.+.+..
T Consensus       414 D~~Y~P~~T~ll~~A~~~G~~~~~G~~Ml~~Qa~~~f~lw~g~~~~~~~~  463 (477)
T PRK09310        414 DINTLPKHSPYTQYARSQGSSIIYGYEMFAEQALLQFRLWFPTLLFKHLE  463 (477)
T ss_pred             eccCCCCCCHHHHHHHHCcCEEECcHHHHHHHHHHHHHHHcCCcccHHHH
Confidence            99999999999999999999999999999999999999999999987743

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=100.00  E-value=6.1e-74  Score=556.15  Aligned_cols=271  Identities=37%  Similarity=0.613  Sum_probs=244.3

Q ss_pred             cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866          169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  246 (454)
Q Consensus       169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  246 (454)
                      ++.+|++|||||+||+||+||.|||++|+++|+|+.|.+++++  +|+.+++.++.+++.|+|||||||+++++|||++|
T Consensus         2 ~~~~t~~~~viG~Pi~HS~SP~~Hn~~~~~lGl~~~Y~a~~v~~~~l~~~v~~~~~~g~~G~NVTiP~Ke~~~~~lD~l~   81 (283)
T COG0169           2 MNGKTKLFGVIGNPISHSLSPRMHNAAFRALGLDYVYLAFEVPPEDLPEAVSGIRALGFRGLNVTIPFKEAALPLLDELS   81 (283)
T ss_pred             CCCCceEEEEEcCCcccCcCHHHHHHHHHHcCCCceEEEeecCHHHHHHHHHHHHhcCCCeeEECCccHHHHHHHHhcCC
Confidence            5677899999999999999999999999999999999999996  99999999999999999999999999999999999


Q ss_pred             HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866          247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  326 (454)
Q Consensus       247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G  326 (454)
                      +.|+.+||||||+++. +|+|+||||||.||+++|++..           ......+++++|+||||+|||++++|++.|
T Consensus        82 ~~A~~iGAVNTl~~~~-~g~l~G~NTD~~G~~~~L~~~~-----------~~~~~~~~~vlilGAGGAarAv~~aL~~~g  149 (283)
T COG0169          82 PRARLIGAVNTLVRED-DGKLRGYNTDGIGFLRALKEFG-----------LPVDVTGKRVLILGAGGAARAVAFALAEAG  149 (283)
T ss_pred             HHHHHhCCceEEEEcc-CCEEEEEcCCHHHHHHHHHhcC-----------CCcccCCCEEEEECCcHHHHHHHHHHHHcC
Confidence            9999999999999982 4999999999999999987631           124556899999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEec
Q 012866          327 A-RVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY  400 (454)
Q Consensus       327 ~-~v~i~nRt~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y  400 (454)
                      + +|+|+|||.+||++|++.++...     ..+.++..  ..++|+||||||+||.+..+..+++.+.|++..+|+|++|
T Consensus       150 ~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~--~~~~dliINaTp~Gm~~~~~~~~~~~~~l~~~~~v~D~vY  227 (283)
T COG0169         150 AKRITVVNRTRERAEELADLFGELGAAVEAAALADLEG--LEEADLLINATPVGMAGPEGDSPVPAELLPKGAIVYDVVY  227 (283)
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhhccccccccccccccc--ccccCEEEECCCCCCCCCCCCCCCcHHhcCcCCEEEEecc
Confidence            8 99999999999999999987432     23333332  1258999999999999874445677788999999999999


Q ss_pred             CCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866          401 TPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK  453 (454)
Q Consensus       401 ~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~~  453 (454)
                      +|.+|||+++|+++|+++++|++||++||++||++|||+++|.+.|++++.+.
T Consensus       228 ~P~~TplL~~A~~~G~~~idGl~Mlv~Qaa~aF~lwtg~~p~~~~~~~a~~~~  280 (283)
T COG0169         228 NPLETPLLREARAQGAKTIDGLGMLVHQAAEAFELWTGVEPPVDVMKEALIEA  280 (283)
T ss_pred             CCCCCHHHHHHHHcCCeEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988764

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=100.00  E-value=3.1e-72  Score=548.99  Aligned_cols=265  Identities=31%  Similarity=0.432  Sum_probs=235.3

Q ss_pred             CccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc-------CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhh
Q 012866          172 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  244 (454)
Q Consensus       172 ~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~-------~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  244 (454)
                      ++++|||||+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++.++|.|+|||||||++++++||+
T Consensus         3 ~~~~~gliG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~~~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~lD~   82 (283)
T PRK14027          3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_pred             CceEEEEECCCccccCCHHHHHHHHHHcCCCeEEEEEecccccCCHHHHHHHHHHHHhcCCCEEEECccCHHHHHHHhhh
Confidence            578999999999999999999999999999999999996       3789999999989999999999999999999999


Q ss_pred             cCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH
Q 012866          245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS  324 (454)
Q Consensus       245 ~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~  324 (454)
                      +|+.|+.+||||||++++ +|+|+||||||.||+.+|++.             ....++|+++|+||||+|||++++|.+
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~Gf~~~L~~~-------------~~~~~~k~vlilGaGGaarAi~~aL~~  148 (283)
T PRK14027         83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG-------------LPNAKLDSVVQVGAGGVGNAVAYALVT  148 (283)
T ss_pred             CCHHHHHhCCceEEEECC-CCcEEEEcCCHHHHHHHHHhc-------------CcCcCCCeEEEECCcHHHHHHHHHHHH
Confidence            999999999999999853 899999999999999998642             123568999999999999999999999


Q ss_pred             CCC-eEEEEeCCHHHHHHHHHHhcCCc----c---ccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEE
Q 012866          325 RGA-RVVIFDIDFERAKSLASDVMGAA----R---PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF  396 (454)
Q Consensus       325 ~G~-~v~i~nRt~~~a~~la~~~~~~~----~---~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~  396 (454)
                      +|+ +|+|+||+.+|+++|++.+....    +   ++.++.. .+..+|+||||||+||.+. +..|++.+.+.+..+|+
T Consensus       149 ~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~-~~~~~divINaTp~Gm~~~-~~~~~~~~~l~~~~~v~  226 (283)
T PRK14027        149 HGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED-VIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVG  226 (283)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHH-HHhhcCEEEEcCCCCCCCC-CCCCCCHHHcCCCcEEE
Confidence            999 89999999999999998874211    1   1111121 2356899999999999875 34567777888899999


Q ss_pred             EEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          397 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       397 D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      |++|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.+
T Consensus       227 D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lw~G~~~~~~~~~~~~~~  282 (283)
T PRK14027        227 DVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS  282 (283)
T ss_pred             EcccCCCCCHHHHHHHHCCCEEEccHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999997653

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=100.00  E-value=6.1e-72  Score=548.61  Aligned_cols=266  Identities=31%  Similarity=0.523  Sum_probs=236.7

Q ss_pred             cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866          169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  246 (454)
Q Consensus       169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  246 (454)
                      ++++|++|||||+||+||+||.|||++|+++|+|++|.+++++  +|+++++.++..+|.|+|||||||++|++++|++|
T Consensus         3 ~~~~t~~~gliG~Pi~hSlSP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~~~~~~D~l~   82 (288)
T PRK12749          3 VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELT   82 (288)
T ss_pred             cCCCceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhccCC
Confidence            4567899999999999999999999999999999999999994  79999999988899999999999999999999999


Q ss_pred             HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866          247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  326 (454)
Q Consensus       247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G  326 (454)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++.             +.++++|+++|+||||+|||++++|..+|
T Consensus        83 ~~A~~iGAVNTv~~~--~g~l~G~NTD~~Gf~~~l~~~-------------~~~~~~k~vlvlGaGGaarAi~~~l~~~g  147 (288)
T PRK12749         83 PAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDIKGKTMVLLGAGGASTAIGAQGAIEG  147 (288)
T ss_pred             HHHHHhCceeEEEcc--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999876  899999999999999998642             24577899999999999999999999999


Q ss_pred             C-eEEEEeCC---HHHHHHHHHHhcCCc------ccccc---ccccCCCCccEEEECCCCCCCCCCCCCC-CChhcccCC
Q 012866          327 A-RVVIFDID---FERAKSLASDVMGAA------RPFED---ILNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDY  392 (454)
Q Consensus       327 ~-~v~i~nRt---~~~a~~la~~~~~~~------~~~~~---l~~~~~~~~divInat~~g~~p~~~~~~-i~~~~l~~~  392 (454)
                      + +|+|+||+   .+++++|+++++...      .++++   +.+ ...++|+||||||+||.|..+..+ ++.+.+++.
T Consensus       148 ~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~-~~~~aDivINaTp~Gm~~~~~~~~~~~~~~l~~~  226 (288)
T PRK12749        148 LKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAE-ALASADILTNGTKVGMKPLENESLVNDISLLHPG  226 (288)
T ss_pred             CCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhh-hcccCCEEEECCCCCCCCCCCCCCCCcHHHCCCC
Confidence            9 99999999   469999999885321      12221   112 245789999999999998655433 345678889


Q ss_pred             cEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012866          393 QLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV  450 (454)
Q Consensus       393 ~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~  450 (454)
                      .+|+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++
T Consensus       227 ~~v~D~vY~P~~T~ll~~A~~~G~~~~~Gl~ML~~Qa~~~f~lwtg~~~~~~~~~~~~  284 (288)
T PRK12749        227 LLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM  284 (288)
T ss_pred             CEEEEecCCCccCHHHHHHHHCCCeEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999875

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-71  Score=546.27  Aligned_cols=266  Identities=32%  Similarity=0.427  Sum_probs=239.5

Q ss_pred             CCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC-------CHHHHHHhcCCCCCCEEEeccCchHHHHhhh
Q 012866          170 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD-------DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFC  242 (454)
Q Consensus       170 ~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~-------~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~  242 (454)
                      +..+++|||||+||+||+||.|||++|+++|+|+.|.+++++       +++++++.++.++|.|+|||||||++++++|
T Consensus         2 ~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~~   81 (284)
T PRK12549          2 SRPSFLAGLIGAGIQASLSPAMHEAEGDAQGLRYVYRLIDLDALGLTADALPELLDAAERMGFAGLNITHPCKQAVIPHL   81 (284)
T ss_pred             CccceEEEEECCCcccccCHHHHHHHHHHcCCCeEEEEEeeccccCCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHh
Confidence            345789999999999999999999999999999999999863       6899999998899999999999999999999


Q ss_pred             hhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHH
Q 012866          243 DEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGA  322 (454)
Q Consensus       243 d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L  322 (454)
                      |++|+.|+.+||||||+++  +|+|+||||||.||+.+|++..             ..+++++|+|+|+||+||+++++|
T Consensus        82 D~~~~~A~~iGAvNTv~~~--~g~l~G~NTD~~G~~~~l~~~~-------------~~~~~k~vlIlGaGGaaraia~aL  146 (284)
T PRK12549         82 DELSDDARALGAVNTVVFR--DGRRIGHNTDWSGFAESFRRGL-------------PDASLERVVQLGAGGAGAAVAHAL  146 (284)
T ss_pred             ccCCHHHHHhCCceEEEec--CCEEEEEcCCHHHHHHHHHhhc-------------cCccCCEEEEECCcHHHHHHHHHH
Confidence            9999999999999999987  8999999999999999987521             245689999999999999999999


Q ss_pred             HHCCC-eEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEE
Q 012866          323 KSRGA-RVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF  396 (454)
Q Consensus       323 ~~~G~-~v~i~nRt~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~  396 (454)
                      ...|+ +|+|+||+.++++++++++....     ..++++.+ .+.++|+||||||+||.|. +..|++.+++++..+|+
T Consensus       147 ~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~-~~~~aDiVInaTp~Gm~~~-~~~~~~~~~l~~~~~v~  224 (284)
T PRK12549        147 LTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAA-ALAAADGLVHATPTGMAKH-PGLPLPAELLRPGLWVA  224 (284)
T ss_pred             HHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHh-hhCCCCEEEECCcCCCCCC-CCCCCCHHHcCCCcEEE
Confidence            99999 99999999999999999875321     22333333 3467999999999999875 34578888899999999


Q ss_pred             EEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          397 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       397 D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      |++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus       225 DivY~P~~T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f~~wtg~~~~~~~~~~~~~~  280 (284)
T PRK12549        225 DIVYFPLETELLRAARALGCRTLDGGGMAVFQAVDAFELFTGREPDAERMLAHFAS  280 (284)
T ss_pred             EeeeCCCCCHHHHHHHHCCCeEecCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998765

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=100.00  E-value=2.1e-70  Score=539.91  Aligned_cols=267  Identities=34%  Similarity=0.557  Sum_probs=238.7

Q ss_pred             cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866          169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  246 (454)
Q Consensus       169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  246 (454)
                      ++.+|++|||||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||++|+++||++|
T Consensus         5 ~~~~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~v~~~ld~~~   84 (289)
T PRK12548          5 ISGTTGLLGLIGSPVGHSGSPAMYNYSFQKAGLDYAYLAFDIPVDKVPDAIKAIKTFNMRGANVTMPCKSEAAKYMDELS   84 (289)
T ss_pred             cCCceeEEEEEcCCcccccCHHHHHHHHHHcCCCEEEEEEecCHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhhcCC
Confidence            5667889999999999999999999999999999999999994  79999999988899999999999999999999999


Q ss_pred             HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866          247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  326 (454)
Q Consensus       247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G  326 (454)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++.             ...+++|+++|+|+||+|||++++|++.|
T Consensus        85 ~~A~~iGavNTi~~~--~g~l~G~NTD~~G~~~~l~~~-------------~~~~~~k~vlI~GAGGagrAia~~La~~G  149 (289)
T PRK12548         85 PAARIIGAVNTIVND--DGKLTGHITDGLGFVRNLREH-------------GVDVKGKKLTVIGAGGAATAIQVQCALDG  149 (289)
T ss_pred             HHHHHhCceeEEEeE--CCEEEEEecCHHHHHHHHHhc-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999887  899999999999999998642             13467899999999999999999999999


Q ss_pred             C-eEEEEeCCH---HHHHHHHHHhcCCc-------ccccc---ccccCCCCccEEEECCCCCCCCCCCCCCC-ChhcccC
Q 012866          327 A-RVVIFDIDF---ERAKSLASDVMGAA-------RPFED---ILNFQPEKGAILANATPLGMHPNTDRVPV-SEETLRD  391 (454)
Q Consensus       327 ~-~v~i~nRt~---~~a~~la~~~~~~~-------~~~~~---l~~~~~~~~divInat~~g~~p~~~~~~i-~~~~l~~  391 (454)
                      + +|+|+||+.   ++++++++++....       .++++   +.+ ....+|+||||||+||.|..+..|+ +.+++.+
T Consensus       150 ~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l~~  228 (289)
T PRK12548        150 AKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA-EIASSDILVNATLVGMKPNDGETNIKDTSVFRK  228 (289)
T ss_pred             CCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh-hhccCCEEEEeCCCCCCCCCCCCCCCcHHhcCC
Confidence            9 699999997   88999988774211       22322   222 2456799999999999987666677 5678899


Q ss_pred             CcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 012866          392 YQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL  451 (454)
Q Consensus       392 ~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~  451 (454)
                      ..+|+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.
T Consensus       229 ~~~v~D~vY~P~~T~ll~~A~~~G~~~~~G~~ML~~Qa~~~f~lwtg~~~~~~~~~~~~~  288 (289)
T PRK12548        229 DLVVADTVYNPKKTKLLEDAEAAGCKTVGGLGMLLWQGAEAYKLYTGKDMPVEEVKELYF  288 (289)
T ss_pred             CCEEEEecCCCCCCHHHHHHHHCCCeeeCcHHHHHHHHHHHHHHhcCCCCCHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999864

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=6.6e-70  Score=534.22  Aligned_cols=269  Identities=32%  Similarity=0.531  Sum_probs=242.5

Q ss_pred             cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866          169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  246 (454)
Q Consensus       169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  246 (454)
                      ++.+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++..+|.|+|||||||+++++++|++|
T Consensus         1 ~~~~~~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~   80 (278)
T PRK00258          1 ITGKTRLYAVIGNPIAHSKSPLIHNAAFKQLGLDGVYLAILVPPEDLEDAVKGFFALGGRGANVTVPFKEAAFALADELS   80 (278)
T ss_pred             CCCceeEEEEECCchhcccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHhhcCC
Confidence            356789999999999999999999999999999999999999  589999999988899999999999999999999999


Q ss_pred             HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866          247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  326 (454)
Q Consensus       247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G  326 (454)
                      +.|+.+||||||+++  +|+|+||||||.||+.+|++.+            +..+++++++|+|+||+||+++++|...|
T Consensus        81 ~~A~~igavNtv~~~--~g~l~G~NTD~~G~~~~l~~~~------------~~~~~~k~vlVlGaGg~a~ai~~aL~~~g  146 (278)
T PRK00258         81 ERARLIGAVNTLVLE--DGRLIGDNTDGIGFVRALEERL------------GVDLKGKRILILGAGGAARAVILPLLDLG  146 (278)
T ss_pred             HHHHHhCCceEEEee--CCEEEEEcccHHHHHHHHHhcc------------CCCCCCCEEEEEcCcHHHHHHHHHHHHcC
Confidence            999999999999976  8999999999999999986422            23577899999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcCCc-ccc-ccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC
Q 012866          327 A-RVVIFDIDFERAKSLASDVMGAA-RPF-EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR  403 (454)
Q Consensus       327 ~-~v~i~nRt~~~a~~la~~~~~~~-~~~-~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~  403 (454)
                      + +|+|+||+.+++++++++++... +.+ .++.+ .+.++|+||||||+||.|..+..|++.+++++..+|+|++|+|.
T Consensus       147 ~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~-~~~~~DivInaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~  225 (278)
T PRK00258        147 VAEITIVNRTVERAEELAKLFGALGKAELDLELQE-ELADFDLIINATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPL  225 (278)
T ss_pred             CCEEEEEeCCHHHHHHHHHHhhhccceeecccchh-ccccCCEEEECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCC
Confidence            6 99999999999999999886432 222 12222 35679999999999998765555777788999999999999999


Q ss_pred             CCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       404 ~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      +|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.+
T Consensus       226 ~T~ll~~A~~~G~~~~~G~~Ml~~Qa~~~f~~wtg~~~~~~~~~~~~~~  274 (278)
T PRK00258        226 PTPFLAWAKAQGARTIDGLGMLVHQAAEAFELWTGVRPPVEPMLAALRA  274 (278)
T ss_pred             CCHHHHHHHHCcCeecCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998865

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-69  Score=527.24  Aligned_cols=262  Identities=32%  Similarity=0.469  Sum_probs=234.4

Q ss_pred             ccCCCccE-EEEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866          168 HINADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  246 (454)
Q Consensus       168 ~~~~~t~~-~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  246 (454)
                      +++.+|++ |||||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++.++|.|+|||||||++|++|||++|
T Consensus         4 ~~~~~~~~~~gliG~P--~~~Sp~ihn~~f~~~gl~~~Y~~~~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~lD~l~   81 (272)
T PRK12550          4 MINKDTQLCISLAARP--SNFGTRFHNYLYEALGLNFLYKAFTTTDLTAAIGGVRALGIRGCAVSMPFKEAVIPLVDELD   81 (272)
T ss_pred             cCCCCceEEEEEEccc--hhcCHHHHHHHHHHcCCCcEEEecCHhHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhcCC
Confidence            46677885 9999999  77889999999999999999999998899999999998999999999999999999999999


Q ss_pred             HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866          247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  326 (454)
Q Consensus       247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G  326 (454)
                      +.|+.+||||||+++  +|+|+||||||.||+++|++.             +.. .+++++|+||||+|||++++|.++|
T Consensus        82 ~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~-~~~~vlilGaGGaarAi~~aL~~~g  145 (272)
T PRK12550         82 PSAQAIESVNTIVNT--DGHLKAYNTDYIAIAKLLASY-------------QVP-PDLVVALRGSGGMAKAVAAALRDAG  145 (272)
T ss_pred             HHHHHhCCeeEEEee--CCEEEEEecCHHHHHHHHHhc-------------CCC-CCCeEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999887  899999999999999998642             122 3578999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC--CCCCCChhcccCCcEEEEEecCCC
Q 012866          327 A-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT--DRVPVSEETLRDYQLVFDAVYTPR  403 (454)
Q Consensus       327 ~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~--~~~~i~~~~l~~~~~v~D~~y~P~  403 (454)
                      + +|+|+||+.+++++|++.++....  +++   ....+|+||||||+||.|..  +..|++.+.+++..+|+|++|+|.
T Consensus       146 ~~~i~i~nR~~~~a~~la~~~~~~~~--~~~---~~~~~dlvINaTp~Gm~~~~~~~~~pi~~~~l~~~~~v~D~vY~P~  220 (272)
T PRK12550        146 FTDGTIVARNEKTGKALAELYGYEWR--PDL---GGIEADILVNVTPIGMAGGPEADKLAFPEAEIDAASVVFDVVALPA  220 (272)
T ss_pred             CCEEEEEeCCHHHHHHHHHHhCCcch--hhc---ccccCCEEEECCccccCCCCccccCCCCHHHcCCCCEEEEeecCCc
Confidence            9 899999999999999998753221  112   12458999999999998754  234688888999999999999999


Q ss_pred             CCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       404 ~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      +|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus       221 ~T~ll~~A~~~G~~~i~Gl~MLi~Qa~~~f~lwtg~~~~~~~~~~~~~~  269 (272)
T PRK12550        221 ETPLIRYARARGKTVITGAEVIALQAVEQFVLYTGVRPSDELIAEAAAF  269 (272)
T ss_pred             cCHHHHHHHHCcCeEeCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998754

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=100.00  E-value=4.7e-68  Score=521.25  Aligned_cols=263  Identities=29%  Similarity=0.431  Sum_probs=225.8

Q ss_pred             CccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC---CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHh
Q 012866          172 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPL  248 (454)
Q Consensus       172 ~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~---~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~  248 (454)
                      ++++|||||+||+||+||.|||++|+++|+|+.|.+++++   ++.++++.++ .+|.|+|||||||++++++||++|+.
T Consensus         4 ~~~~~~liG~Pi~hS~SP~ihn~~f~~~gl~~~y~~~~~~~~~~l~~~~~~~~-~~~~G~nVT~P~K~~~~~~~d~~~~~   82 (282)
T TIGR01809         4 GPKKAFIIGKPIAHSRSPHLHNAGYEILGLPDKTYEFETCSAEELKEVLSGFG-PQFGGASVTIPLKFAILRFADEHTDR   82 (282)
T ss_pred             CCeEEEEEcCCchhccCHHHHHHHHHHcCCCcEEEeeecCCHHHHHHHHHhcC-CCCcEEEECCCCHHHHHHHhhcCCHH
Confidence            4689999999999999999999999999999999999873   5888888774 49999999999999999999999999


Q ss_pred             HhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-
Q 012866          249 AQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-  327 (454)
Q Consensus       249 A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-  327 (454)
                      |+.+||||||++++ +|+|+||||||.||+.+|++.    +       ....+++++++|||+||+||+++++|.++|+ 
T Consensus        83 A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~----~-------~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~  150 (282)
T TIGR01809        83 ASLIGSVNTLLRTQ-NGIWKGDNTDWDGIAGALANI----G-------KFEPLAGFRGLVIGAGGTSRAAVYALASLGVT  150 (282)
T ss_pred             HHHhCceeEEEEcC-CCcEEEecCCHHHHHHHHHhh----C-------CccccCCceEEEEcCcHHHHHHHHHHHHcCCC
Confidence            99999999999853 889999999999999998642    0       0013678999999999999999999999999 


Q ss_pred             eEEEEeCCHHHHHHHHHHhcCCc--ccc---ccccccCCCCccEEEECCCCCCCCCCCCCCCCh-------hcccCCcEE
Q 012866          328 RVVIFDIDFERAKSLASDVMGAA--RPF---EDILNFQPEKGAILANATPLGMHPNTDRVPVSE-------ETLRDYQLV  395 (454)
Q Consensus       328 ~v~i~nRt~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~divInat~~g~~p~~~~~~i~~-------~~l~~~~~v  395 (454)
                      +|+|+||+.+|+++|+++++...  ..+   +++.. .+.++|+||||||+||...  ...+..       +.+++..+|
T Consensus       151 ~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~-~~~~~DiVInaTp~g~~~~--~~~l~~~~~~~~~~~~~~~~~v  227 (282)
T TIGR01809       151 DITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLA-IEKAAEVLVSTVPADVPAD--YVDLFATVPFLLLKRKSSEGIF  227 (282)
T ss_pred             eEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhh-cccCCCEEEECCCCCCCCC--HHHhhhhhhhhccccCCCCcEE
Confidence            89999999999999999885421  112   23323 3467899999999998432  111210       113467899


Q ss_pred             EEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012866          396 FDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV  450 (454)
Q Consensus       396 ~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~  450 (454)
                      +|++|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++
T Consensus       228 ~D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~~  282 (282)
T TIGR01809       228 LDAAYDPWPTPLVAIVSAAGWRVISGLQMLLHQGFAQFEQWTGMPAPREAMACAL  282 (282)
T ss_pred             EEEeeCCCCCHHHHHHHHCCCEEECcHHHHHHHHHHHHHHHHCCCChHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999864

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=100.00  E-value=1.6e-66  Score=508.42  Aligned_cols=261  Identities=34%  Similarity=0.553  Sum_probs=235.2

Q ss_pred             cEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhH
Q 012866          174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  251 (454)
Q Consensus       174 ~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  251 (454)
                      ++|||||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++.++|.|+|||||||+++++++|++|+.|+.
T Consensus         1 ~~~~viG~pi~hS~SP~~hn~~~~~~g~~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~~~~A~~   80 (270)
T TIGR00507         1 KLYGVIGNPIAHSKSPLIHNAFFKQLGLEGPYIAFLVPPDDLEDALSGFFALGFKGANVTSPFKEEAFQFLDEIDERAKL   80 (270)
T ss_pred             CEEEEECCccccccCHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHHhcCCCEEEECcCCHHHHHHHhhhCCHHHHH
Confidence            47999999999999999999999999999999999994  7999999999889999999999999999999999999999


Q ss_pred             ccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEE
Q 012866          252 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  331 (454)
Q Consensus       252 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i  331 (454)
                      +||||||+++  +|+|+||||||.||+++|++.             ....++++++|+|+||+|++++++|.+.|++|++
T Consensus        81 ~gavNti~~~--~g~l~g~NTD~~G~~~~l~~~-------------~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v  145 (270)
T TIGR00507        81 AGAVNTLKLE--DGKLVGYNTDGIGLVSDLERL-------------IPLRPNQRVLIIGAGGAARAVALPLLKADCNVII  145 (270)
T ss_pred             hCCceEEEee--CCEEEEEcCCHHHHHHHHHhc-------------CCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence            9999999977  899999999999999998641             1235678999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHH
Q 012866          332 FDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL  407 (454)
Q Consensus       332 ~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~l  407 (454)
                      +||+.++++++++++...    ..+.++.   ...++|+||||||.||.+..+..+++.+.++++.+|+|++|+|.+|+|
T Consensus       146 ~~R~~~~~~~la~~~~~~~~~~~~~~~~~---~~~~~DivInatp~gm~~~~~~~~~~~~~l~~~~~v~D~~y~p~~T~l  222 (270)
T TIGR00507       146 ANRTVSKAEELAERFQRYGEIQAFSMDEL---PLHRVDLIINATSAGMSGNIDEPPVPAEKLKEGMVVYDMVYNPGETPF  222 (270)
T ss_pred             EeCCHHHHHHHHHHHhhcCceEEechhhh---cccCccEEEECCCCCCCCCCCCCCCCHHHcCCCCEEEEeccCCCCCHH
Confidence            999999999999887531    1122221   234689999999999988765556777888999999999999999999


Q ss_pred             HHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          408 LKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       408 l~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      +++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus       223 l~~A~~~G~~~vdG~~Ml~~Qa~~~f~~w~g~~~~~~~~~~~~~~  267 (270)
T TIGR00507       223 LAEAKSLGTKTIDGLGMLVAQAALAFELWTGVEPDIEKMFEQLIA  267 (270)
T ss_pred             HHHHHHCCCeeeCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998865

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK13575 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=1.4e-43  Score=337.83  Aligned_cols=166  Identities=20%  Similarity=0.296  Sum_probs=151.3

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccC--cchHHHHhh-hcCCCCeEEEEeeccCCCCCCHhH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKV--ASNILGKQY-SSHQSGTRFIVSCNLDCETPSEED   76 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~--~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~   76 (454)
                      |+|||+|+++|||.+++++++|.++++.++..+ +||||||++.  +.+..+++. ..+..++++|+|||||++||+.++
T Consensus        64 p~I~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~vDiE~~~~~~~~~~~~l~~~~~~~~~~vI~S~H~F~~TP~~~~  143 (238)
T PRK13575         64 KLLVTYRTKLQGGYGQFTNDLYLNLLSDLANINGIDMIDIEWQADIDIEKHQRLITHLQQYNKEVVISHHNFESTPPLDE  143 (238)
T ss_pred             CEEEEeCChhhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEcccCCChHHHHHHHHHHHHcCCEEEEecCCCCCCCCHHH
Confidence            899999999999999999999999998888765 8999999986  334455554 345689999999999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCC
Q 012866           77 LGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL  152 (454)
Q Consensus        77 l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~Ap  152 (454)
                      |.+++++|.++||||+|||+||++.+|+++|++++.+    .+.|+|+|+||+.|++||+++++|||++||+++++++||
T Consensus       144 l~~~~~~m~~~gaDi~KiAv~~~~~~Dvl~Ll~~~~~~~~~~~~p~i~i~MG~~G~iSRi~~~~~GS~~Tya~l~~~sAP  223 (238)
T PRK13575        144 LKFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALSYGCIGEPQAP  223 (238)
T ss_pred             HHHHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCEEEEeCCCCCchhhcchhhhCCceEecCCCCCCCC
Confidence            9999999999999999999999999999999999653    367999999999999999999999999999999999999


Q ss_pred             CCCChHhhhhhccc
Q 012866          153 GLPTVESLRQTYKV  166 (454)
Q Consensus       153 GQ~~~~~l~~~~~~  166 (454)
                      ||+++++|++++..
T Consensus       224 GQi~v~~l~~i~~~  237 (238)
T PRK13575        224 GQIHVTDLKAQVTL  237 (238)
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998753

>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-43  Score=331.66  Aligned_cols=166  Identities=25%  Similarity=0.383  Sum_probs=154.3

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY   79 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~   79 (454)
                      |+|||+|+.+|||.|++++++|+++|+.+++.+ ++|||||++.+.+.++++...+ +..++|+|||||++||+++++.+
T Consensus        59 ~~IfT~R~~~EGG~~~~~~~~~i~ll~~la~~~~~d~iDiEl~~~~~~~~~~~~~~-~~~~vI~SyH~F~~TP~~~~i~~  137 (231)
T COG0710          59 PLIFTFRTVKEGGEFPGSEEEYIELLKKLAELNGPDYIDIELSSPEDDVKEIIKFA-KKHGVIVSYHDFEKTPPLEEIIE  137 (231)
T ss_pred             ceEEEEeehhhcCCCCCCHHHHHHHHHHHHhhcCCCEEEEEccCcchhHHHHHhcc-ccCCEEEEeccCCCCCcHHHHHH
Confidence            899999999999999999999999999999975 9999999999987776776532 23339999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc---CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCC
Q 012866           80 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSH---CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPT  156 (454)
Q Consensus        80 ~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~---~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~  156 (454)
                      ++.+|...|+||+|||+||++.+|++++++++..   ...|+|+||||..|++||+++++|||++||+++++++||||++
T Consensus       138 ~l~km~~~~aDivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~~SRv~~~~~GS~~tya~~~~~sAPGQi~  217 (231)
T COG0710         138 RLDKMESLGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMGKTGKISRVAGPVFGSPITYASLDKPSAPGQIS  217 (231)
T ss_pred             HHHHHHhhCCCeEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecCCCCchhhhhHhhhCCceeEeecCCCCCCCCCC
Confidence            9999999999999999999999999999999875   6899999999999999999999999999999999999999999


Q ss_pred             hHhhhhhcccc
Q 012866          157 VESLRQTYKVE  167 (454)
Q Consensus       157 ~~~l~~~~~~~  167 (454)
                      ++++++++...
T Consensus       218 v~~l~~~~~~l  228 (231)
T COG0710         218 VDELRKILTLL  228 (231)
T ss_pred             HHHHHHHHHHh
Confidence            99999988654

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=4.7e-43  Score=338.51  Aligned_cols=167  Identities=23%  Similarity=0.374  Sum_probs=157.6

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLG   78 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~   78 (454)
                      |+|||+|+++|||+|++++++|+++|+.+++.| ++|||||++.+.+.++++.. .++.++++|+|||||++||+.++|.
T Consensus        76 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP~~~~l~  155 (253)
T PRK02412         76 PLLFTFRTAKEGGEIALSDEEYLALIKAVIKSGLPDYIDVELFSGKDVVKEMVAFAHEHGVKVVLSYHDFEKTPPKEEIV  155 (253)
T ss_pred             cEEEEECChhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeccCChHHHHHHHHHHHHcCCEEEEeeCCCCCCcCHHHHH
Confidence            899999999999999999999999999999999 99999999998887777764 4668999999999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc-----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCC
Q 012866           79 YLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLG  153 (454)
Q Consensus        79 ~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApG  153 (454)
                      +++++|.++||||+|||+||++.+|+++++++..+     .+.|+|+|+||+.|++||+++++|||++||+++++++|||
T Consensus       156 ~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~G~~SRil~~~~GS~~ty~~~~~~sAPG  235 (253)
T PRK02412        156 ERLRKMESLGADIVKIAVMPQSEQDVLTLLNATREMKELYADQPLITMSMGKLGRISRLAGEVFGSSWTFASLDKASAPG  235 (253)
T ss_pred             HHHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCchHHHcchhhhCCcceecCCCCCCCCC
Confidence            99999999999999999999999999999998743     4689999999999999999999999999999999999999


Q ss_pred             CCChHhhhhhcccc
Q 012866          154 LPTVESLRQTYKVE  167 (454)
Q Consensus       154 Q~~~~~l~~~~~~~  167 (454)
                      |+++++|+++++..
T Consensus       236 Q~~~~el~~i~~~l  249 (253)
T PRK02412        236 QISVEDLRRILEIL  249 (253)
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999998764

>TIGR01093 aroD 3-dehydroquinate dehydratase, type I

Probab=100.00  E-value=7.8e-43  Score=332.68  Aligned_cols=164  Identities=29%  Similarity=0.483  Sum_probs=153.4

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHH-HHhCCcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLA-EDLGADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLG   78 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~-~~~~~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~   78 (454)
                      |+|||+|+++|||.|++++++|+++|+.+ .+.++||||||++.+++..+++.. ++++++|+|+|||||++||+++++.
T Consensus        59 piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~  138 (228)
T TIGR01093        59 PLIFTIRTISEGGKFPGNEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIV  138 (228)
T ss_pred             cEEEEECChhhCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHH
Confidence            89999999999999999999999999988 577899999999998887777764 4678999999999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhccC----CCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCC
Q 012866           79 YLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGL  154 (454)
Q Consensus        79 ~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~----~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ  154 (454)
                      +++++|.++||||+|+|+||++.+|+++|++++.+.    ++|+|+|+||+.|++||+++++|||++||++++.++||||
T Consensus       139 ~~~~~~~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ  218 (228)
T TIGR01093       139 ERLEKALSYGADIVKIAVMANSKEDVLTLLEITNKVDEHADVPLITMSMGDRGKISRVLGAVFGSVLTFGSLGKASAPGQ  218 (228)
T ss_pred             HHHHHHHHhCCCEEEEEeccCCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChhHhhccccccccceeccCCCCCCCCC
Confidence            999999999999999999999999999999997543    5799999999999999999999999999999999999999


Q ss_pred             CChHhhhhhc
Q 012866          155 PTVESLRQTY  164 (454)
Q Consensus       155 ~~~~~l~~~~  164 (454)
                      +++++|++++
T Consensus       219 ~~~~~l~~~~  228 (228)
T TIGR01093       219 ISVDDLRELL  228 (228)
T ss_pred             cCHHHHHhhC
Confidence            9999999864

Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=100.00  E-value=3.1e-41  Score=321.33  Aligned_cols=163  Identities=36%  Similarity=0.537  Sum_probs=151.3

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhh-hcCCCCeEEEEeeccCCCCCCHhHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQY-SSHQSGTRFIVSCNLDCETPSEEDLGY   79 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~-~~~~~~~kiI~S~H~f~~tp~~~~l~~   79 (454)
                      |+|||+|+++|||.|++++++|+++++.++++|++|||||++. + .++++. ..+++++|||+|||+|++||+.+++.+
T Consensus        57 piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~-~-~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~l~~  134 (225)
T cd00502          57 PIIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS-A-LLEELINSRKKGNTKIIGSYHDFSGTPSDEELVS  134 (225)
T ss_pred             CEEEEEcccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc-h-HHHHHHHHHHhCCCEEEEEeccCCCCcCHHHHHH
Confidence            8999999999999999999999999999999999999999998 3 344444 345689999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEecccCCHhHHHHHHHHhccC----CCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCC
Q 012866           80 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLP  155 (454)
Q Consensus        80 ~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~----~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~  155 (454)
                      .+++|.++||||+|+|+||++.+|++++++++.+.    +.|+|+|+||+.|++||+++++|||++||+++++++||||+
T Consensus       135 ~~~~~~~~gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~~t~~~~~~~sApGQ~  214 (225)
T cd00502         135 RLEKMAALGADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAINMGELGKLSRILSPVFGSPLTYASLPEPSAPGQL  214 (225)
T ss_pred             HHHHHHHhCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcCCCCchhhccccccCCcccccCCCCCCCCCCc
Confidence            99999999999999999999999999999997654    46999999999999999999999999999999999999999


Q ss_pred             ChHhhhhhcc
Q 012866          156 TVESLRQTYK  165 (454)
Q Consensus       156 ~~~~l~~~~~  165 (454)
                      +++++++++.
T Consensus       215 ~~~~l~~~~~  224 (225)
T cd00502         215 SVEELKQALS  224 (225)
T ss_pred             CHHHHHHHHh
Confidence            9999998875

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4

Probab=100.00  E-value=3.9e-42  Score=327.37  Aligned_cols=165  Identities=33%  Similarity=0.514  Sum_probs=142.5

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL   80 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~   80 (454)
                      |+|||+|+++|||.+++++++|+++|+.+++.|++|||||++..++........+.++++||+|||||++||+++++.++
T Consensus        56 piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~iI~S~H~f~~tp~~~~l~~~  135 (224)
T PF01487_consen   56 PIIFTVRTKEEGGRFQGSEEEYLELLERAIRLGPDYIDIELDLFPDDLKSRLAARKGGTKIILSYHDFEKTPSWEELIEL  135 (224)
T ss_dssp             EEEEE--BGGGTSSBSS-HHHHHHHHHHHHHHTSSEEEEEGGCCHHHHHHHHHHHHTTSEEEEEEEESS---THHHHHHH
T ss_pred             CEEEEecccccCCCCcCCHHHHHHHHHHHHHcCCCEEEEEcccchhHHHHHHHHhhCCCeEEEEeccCCCCCCHHHHHHH
Confidence            89999999999999999999999999999999999999999965544333333456899999999999999999999999


Q ss_pred             HHHHHhcCCCEEEEecccCCHhHHHHHHHHhccC----CCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCC
Q 012866           81 VSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPT  156 (454)
Q Consensus        81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~----~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~  156 (454)
                      +++|.+.||||+|||+++++.+|+++|++++.+.    +.|+|+|+||+.|++||+++++|||++||++.++++||||++
T Consensus       136 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~~~~~p~i~~~MG~~G~~SRi~~~~~Gs~~t~~~~~~~sApGQl~  215 (224)
T PF01487_consen  136 LEEMQELGADIVKIAVMANSPEDVLRLLRFTKEFREEPDIPVIAISMGELGRISRILNPIFGSVLTFASAGEASAPGQLT  215 (224)
T ss_dssp             HHHHHHTT-SEEEEEEE-SSHHHHHHHHHHHHHHHHHTSSEEEEEEETGGGHHHHHCHHHHTBSEEEEBSSS-SSTT-EB
T ss_pred             HHHHHhcCCCeEEEEeccCCHHHHHHHHHHHHHHhhccCCcEEEEEcCCCchhHHHHHhhhcCCcccCCCCCCCCCCCCc
Confidence            9999999999999999999999999999997653    689999999999999999999999999999988899999999


Q ss_pred             hHhhhhhcc
Q 012866          157 VESLRQTYK  165 (454)
Q Consensus       157 ~~~l~~~~~  165 (454)
                      +++|+++|+
T Consensus       216 ~~~l~~~~~  224 (224)
T PF01487_consen  216 LEELREILH  224 (224)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            999999874

2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....

>PRK13576 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=7.8e-39  Score=299.51  Aligned_cols=152  Identities=16%  Similarity=0.124  Sum_probs=134.6

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL   80 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~   80 (454)
                      |+|||+|+++|||.+++++++|+++|+.+++.+. ++|||++...+..       ..+.++|+|||||++||+.++|.++
T Consensus        53 plI~T~R~~~EGG~~~~~~~~r~~ll~~~~~~~~-~vDiE~~~a~~~~-------~~~~~vI~S~HdF~~TP~~~eL~~~  124 (216)
T PRK13576         53 KLIVTLRDKAEGGINELDDELKISLLKELYDKQF-LYDVEASFLQKYN-------VPYDNKIVSIHYFDYLPTSEEVKEI  124 (216)
T ss_pred             CEEEEeCChHHCCCCcCCHHHHHHHHHHHHHhCC-eEEEEcchhhhcC-------CCCCeEEEEECCCCCCcCHHHHHHH
Confidence            8999999999999999999999999999999975 7799998543211       1346899999999999999999999


Q ss_pred             HHHHHhcCCCEEEEecccCCH-hHHH-HHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCChH
Q 012866           81 VSRMQATGADIIKLVFSVNDI-TEIA-RIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVE  158 (454)
Q Consensus        81 ~~~~~~~gadivKia~~~~~~-~D~~-~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~~~  158 (454)
                      +++|.+ ||||+|||+||++. .|++ +|++   .  ..+|+|+||+.| +||+++++|||++||+++++++||||++++
T Consensus       125 l~~m~~-gaDI~KiA~mp~~~~~d~l~~Ll~---~--~~~i~~~MG~~G-iSRi~~~~fGS~lTy~~~~~~sAPGQi~v~  197 (216)
T PRK13576        125 VSKFYE-KAFSVKIAVLGLKGYKEVLLPLLE---Y--ENVTVMPMSVNP-LERIAFSLLGSKLIYSYAIEPTAQGQLHYK  197 (216)
T ss_pred             HHHHHh-cCCEEEEEeCCCCchHhHHHHHhc---c--cCccEEEcCCcc-HHHHHHHHhCCeeEEEecCCCCCCCCccHH
Confidence            999987 99999999999985 6665 6664   2  245889999999 999999999999999999999999999999


Q ss_pred             hhhhhcccc
Q 012866          159 SLRQTYKVE  167 (454)
Q Consensus       159 ~l~~~~~~~  167 (454)
                      +|+++++..
T Consensus       198 ~l~~i~~~l  206 (216)
T PRK13576        198 KVKQILNYL  206 (216)
T ss_pred             HHHHHHHHH
Confidence            999999854

>KOG0692 consensus Pentafunctional AROM protein [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-36  Score=302.73  Aligned_cols=429  Identities=14%  Similarity=0.042  Sum_probs=354.5

Q ss_pred             CEEEEeccCCCCCC---CCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHH
Q 012866            1 MLCNVSRPKWAGGL---YEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDL   77 (454)
Q Consensus         1 p~l~T~R~~~eGG~---~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l   77 (454)
                      |.|+|.|.+||||.   .++...++-.-++..++++.+|+|.|+....++...+-....+..+||.+.|+++.+|    +
T Consensus       151 ~~L~~~~~~we~~~~~vveG~gg~~~~~~~~~~eLylgnagta~r~lt~~aa~v~~k~~~k~~Vl~g~hrmq~rP----i  226 (595)
T KOG0692|consen  151 KTLGLNVETWEENNRAVVEGCGGEFSIDSKSDIELYLGNAGTAMRPLTEFAAAVTAKGGNKSYVLDGVHRMQERP----I  226 (595)
T ss_pred             HHhccccceecCCCEEEEEcCCCeeeechhhhhhhccCccchhhhhHHHHHHHhhcCCCCceEEEecCcccccCC----c
Confidence            46899999999998   8888877766677888999999999999887766555544445569999999999999    6


Q ss_pred             HHHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCC-C-CCCCCC
Q 012866           78 GYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG-T-PVLGLP  155 (454)
Q Consensus        78 ~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~-~-~ApGQ~  155 (454)
                      ..+...+++.||||.|++.+...+-|+. ....++..++|+++.-||+.+..+|+++|+++.++|+..+++ + ++|+|.
T Consensus       227 ~~LV~~l~q~GadI~~~~~t~~~p~dv~-~~~~~~gg~v~l~g~Vssqy~~~~lm~ap~a~g~vt~~~vdgk~iS~pyv~  305 (595)
T KOG0692|consen  227 GDLVVGLKQLGADIECTLGTNCPPVDVN-ANGGLPGGKVKLSGSVSSQYLTALLMCAPLALGDVTIEIVDGKLISVPYVE  305 (595)
T ss_pred             hHHHHHHHhcCCceEEeccCCCCceeee-ccCCCcCceeeeeeeehhhHHHHHHHhhhhcCCceEEEeecCccccccchh
Confidence            7777888889999999999999999998 666677789999999999999999999999999999999985 4 999999


Q ss_pred             ChHhhhhhc--cccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEE-ecc
Q 012866          156 TVESLRQTY--KVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS-VGF  232 (454)
Q Consensus       156 ~~~~l~~~~--~~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~-VT~  232 (454)
                      ..-.|.+.|  ++.+....++.|++.|.|+.|+.+|.+||.+|.+--.++.|.-..++..-+++......++.||+ |+.
T Consensus       306 mt~~lme~fgvn~~~s~~~~~~y~i~g~~y~~p~~~~ve~dAssa~yfla~aa~tg~~~tV~~~g~~Slqgda~Fa~vl~  385 (595)
T KOG0692|consen  306 MTLKLMERFGVNVEHSTSWDRFYVIGGQKYKSPGNAYVEGDASSASYFLAGAAITGETVTVEGCGTTSLQGDAKFAEVLE  385 (595)
T ss_pred             HHHHHHHHhCcCeEecCCCcceEeccCcccCCCCCceeecccccccccceeeeEecceeeeccccceecccccchHhhhc
Confidence            999999999  78899999999999999999999999999999999999998877766555566555566899999 999


Q ss_pred             CchHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCC----CCCCCCCCCceEEE
Q 012866          233 PYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGT----ASFGSPLAGRMFVL  308 (454)
Q Consensus       233 P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~----~~~~~~~~~k~vlV  308 (454)
                      |||.++...+|++++.+.-+||+|++.++..|+...++|+|..+-+.++...+.   +.+.+    +-. ...-.++..|
T Consensus       386 pmgc~v~qt~~svtv~gp~~ga~~~~~lr~iD~m~~m~d~~~t~svvA~~~~~~---s~gdptti~~~a-s~rvket~r~  461 (595)
T KOG0692|consen  386 PMGCKVSQTENSVTVTGPPRGAFGMRHLRAIDVMNKMPDVAMTLSVVALFAGLR---SSGDPTTIRDVA-SWRVKETERM  461 (595)
T ss_pred             cccceeeeecccccccCCCCCcccceehhhhcccccccchhHhHhHHHHhhccc---CCCCCccccccc-chhHHHHHHH
Confidence            999999999999999999999999998775688999999999999998876543   22211    000 1122356778


Q ss_pred             EccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhc
Q 012866          309 AGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEET  388 (454)
Q Consensus       309 iGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~  388 (454)
                      ||.|+..++..+...+.+..++|.||+ +|+-++++..+.  .+++|=.  ....+.++-+|++.+  +...+.++....
T Consensus       462 ia~~~el~klg~~~~E~~dg~~v~~~~-~k~lk~ae~~g~--~TydDhr--~am~fsvLA~~~~~~--~~i~d~~ct~kt  534 (595)
T KOG0692|consen  462 IAICTELRKLGATVEEGSDGYCVITPP-EKKLKLAEIDGS--LTYDDHR--MAMAFSVLAACADVP--ITINDPGCTRKT  534 (595)
T ss_pred             HHHHHHHHHhcccccccCceEEEeCCc-hHhccchhhccc--ccccccc--chhhhhHHHhccCCC--ccccCCCccccc
Confidence            999999999999888888889999999 888888876422  2233211  234566777778766  455555666666


Q ss_pred             ccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 012866          389 LRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI  449 (454)
Q Consensus       389 l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~  449 (454)
                      |+.-..|+|-+|.|+-|.+  ++.+.|....  -+|++.|+.+||+.++|+.++.++-.+.
T Consensus       535 ~p~y~~Vl~~~~~~kltga--eple~~a~kn--ssm~vigmr~agkttigk~~akeL~~ki  591 (595)
T KOG0692|consen  535 FPDYFQVLERITKHKLTGA--EPLESGAIKN--SSMFVIGMREAGKTTIGKPAAKELYWKI  591 (595)
T ss_pred             cchHHHHHHHHhhcccccc--Chhhcccccc--ceeeeehhhhcCceecCccchHHhCeee
Confidence            7776779999999999986  8888887655  9999999999999999999999876553

>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional

Probab=100.00  E-value=1.3e-32  Score=260.02  Aligned_cols=144  Identities=17%  Similarity=0.230  Sum_probs=125.1

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL   80 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~   80 (454)
                      |+|||+|+.        ++   .++++.+++.+++|||||++...++     ..+..++++|+|||    ||+.++|.++
T Consensus        78 p~I~T~R~~--------~~---~~~l~~a~~~~~d~vDIEl~~~~~~-----~~~~~~~kvIvS~H----tp~~eeL~~~  137 (229)
T PRK01261         78 DYIFTYRGV--------DA---RKYYETAIDKMPPAVDLDINLIGKL-----EFRPRNTMLMVSYH----TNNSDNMPAI  137 (229)
T ss_pred             CEEEEEcCC--------CH---HHHHHHHHhhCCCEEEEEcccchhh-----hhhcCCCeEEEEeC----CCCHHHHHHH
Confidence            899999953        22   4788888888899999999873332     22457999999999    6888999999


Q ss_pred             HHHHHhcCCCEEEEecccCCHhHHHHHHHH----hccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCC
Q 012866           81 VSRMQATGADIIKLVFSVNDITEIARIFQL----LSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPT  156 (454)
Q Consensus        81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~----~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~  156 (454)
                      +++|.+.||||+|||+||++.+|+++++..    ..+.+.|+|+|+||+  ++||+++++|||++||+++++++||||++
T Consensus       138 l~~m~~~gaDI~KiAvmp~~~~Dvl~~l~~~~~~~~~~~~p~i~isMG~--~iSRi~~~~fGS~lTyas~~~~sAPGQi~  215 (229)
T PRK01261        138 LDIMNEKNPDYVKVACNYNDNKKFVDDLQYILMKKDEKYKPIVFIPMGR--EFLRIFSGYYVSDIVYARYDNETAPGQPK  215 (229)
T ss_pred             HHHHHHhCCCEEEEEeCCCChHHHHHHHHHHHHHHhcCCCCEEEEECCc--HHHHHHHHHHCCceEEeeCCCCCCCCCCC
Confidence            999999999999999999999998776643    344578999999999  99999999999999999999999999999


Q ss_pred             hHhhhhhccc
Q 012866          157 VESLRQTYKV  166 (454)
Q Consensus       157 ~~~l~~~~~~  166 (454)
                      +++|+++++.
T Consensus       216 v~~l~~~~~~  225 (229)
T PRK01261        216 RDYYESAFIK  225 (229)
T ss_pred             HHHHHHHHHH
Confidence            9999999874

>PF08501 Shikimate_dh_N: Shikimate dehydrogenase substrate binding domain; InterPro: IPR013708 This domain is the substrate binding domain of shikimate dehydrogenase []

Probab=99.95  E-value=4.5e-29  Score=200.05  Aligned_cols=81  Identities=40%  Similarity=0.815  Sum_probs=75.1

Q ss_pred             EecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhHccce
Q 012866          178 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAV  255 (454)
Q Consensus       178 liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igav  255 (454)
                      |||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||+++++++|++|+.|+.+|||
T Consensus         1 viG~pi~hS~SP~~hn~~f~~~g~~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~~VT~P~K~~~~~~~D~~~~~A~~igAv   80 (83)
T PF08501_consen    1 VIGNPISHSLSPLIHNAAFEALGLDAVYIPFEVEPEDLEDFLDALRAPNFRGLNVTMPHKEAAIPYLDELSPSAKAIGAV   80 (83)
T ss_dssp             EEESSSTT-SHHHHHHHHHHHTTSSEEEEEEETSTTCHHHHHHHHHHTTESEEEE-TTSTTHHGGGSSEE-HHHHHHTS-
T ss_pred             CcCCCcccccCHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHhcCCCCeeeecchHHHHHHHHhccCCHHHHHhCCc
Confidence            7999999999999999999999999999999996  99999999988999999999999999999999999999999999


Q ss_pred             eEE
Q 012866          256 NTI  258 (454)
Q Consensus       256 NTi  258 (454)
                      |||
T Consensus        81 Ntv   83 (83)
T PF08501_consen   81 NTV   83 (83)
T ss_dssp             SEE
T ss_pred             ccC
Confidence            997

Shikimate dehydrogenase catalyses the fourth step of the mycobacterial Shikimate pathway, which results in the biosynthesis of chorismate. Chorismate is a precursor of aromatic amino acids, naphthoquinones, menaquinones and mycobactins [, ]. This pathway is an important target for antibacterial agents, especially against Mycobacterium tuberculosis, since it does not occur in mammals.; GO: 0004764 shikimate 3-dehydrogenase (NADP+) activity, 0055114 oxidation-reduction process; PDB: 3U62_A 2EGG_A 1P74_B 1P77_A 3O8Q_A 3TNL_C 3TOZ_G 1NYT_C 1VI2_B 1NPD_A ....

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=99.93  E-value=8.2e-25  Score=213.79  Aligned_cols=184  Identities=20%  Similarity=0.303  Sum_probs=153.3

Q ss_pred             EEEecCCCCcccCHHHHHHHHHhcCCCceEEec--cc--CCHHHHHHhcC-CCCCCEEEeccCchHHHHh--hhhhcCHh
Q 012866          176 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPM--FV--DDLKKFFSTYS-SPDFAGFSVGFPYKEAVMK--FCDEVHPL  248 (454)
Q Consensus       176 ~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~--~~--~~~~~~~~~l~-~~~~~G~~VT~P~K~~v~~--~~d~~~~~  248 (454)
                      .-++|+.-+.-.--.+||++|+++|+++.|.++  ++  +++.+.++.|+ +.++.|++||+|||+.+.+  ++|++ +.
T Consensus        38 ~i~vg~~~~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~~i~~~~~ld~I-~~  116 (283)
T PRK14192         38 TILVGDDPASATYVRMKGNACRRVGMDSLKVELPQETTTEQLLAKIEELNANPDVHGILLQHPVPAQIDERACFDAI-SL  116 (283)
T ss_pred             EEEeCCChhHHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCccccCHHHHHhcc-CH
Confidence            445664333333346999999999999999999  55  37888888885 4489999999999999999  99999 99


Q ss_pred             HhHccceeEEEEeCCCCe------EEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866          249 AQAIAAVNTIIRRPSDGK------LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG  321 (454)
Q Consensus       249 A~~igavNTi~~~~~~g~------l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~  321 (454)
                      ++.++++||+ +   +|+      ++|+||| .||++.|+..             +.+++||+|+|+|+|| +||+++..
T Consensus       117 aKDVdg~n~~-n---~G~l~~~~~~~~p~T~-~gii~~L~~~-------------~i~l~Gk~vvViG~gg~vGkpia~~  178 (283)
T PRK14192        117 AKDVDGVTCL-G---FGRMAMGEAAYGSATP-AGIMRLLKAY-------------NIELAGKHAVVVGRSAILGKPMAMM  178 (283)
T ss_pred             HHhcCCCCcc-c---cCccccCCCcccCCcH-HHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHH
Confidence            9999999998 3   466      8999999 9999998752             3678999999999999 99999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      |.+.|+.|++++|   +++.+++.               ..++|+|||||+   .|.    +++.++++++.+|+|+.|+
T Consensus       179 L~~~gatVtv~~~---~t~~L~~~---------------~~~aDIvI~AtG---~~~----~v~~~~lk~gavViDvg~n  233 (283)
T PRK14192        179 LLNANATVTICHS---RTQNLPEL---------------VKQADIIVGAVG---KPE----LIKKDWIKQGAVVVDAGFH  233 (283)
T ss_pred             HHhCCCEEEEEeC---CchhHHHH---------------hccCCEEEEccC---CCC----cCCHHHcCCCCEEEEEEEe
Confidence            9999999999998   34444443               246899999994   232    6888999999999999999


Q ss_pred             CC
Q 012866          402 PR  403 (454)
Q Consensus       402 P~  403 (454)
                      |.
T Consensus       234 ~~  235 (283)
T PRK14192        234 PR  235 (283)
T ss_pred             ec
Confidence            94

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=99.92  E-value=8.1e-24  Score=189.44  Aligned_cols=152  Identities=38%  Similarity=0.619  Sum_probs=127.1

Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc
Q 012866          272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA  350 (454)
Q Consensus       272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~  350 (454)
                      ||+.||.+++++.             +.++++++++|+|+|++|++++.+|.+.|. +|++++|+.+++++++++++...
T Consensus         1 td~~g~~~a~~~~-------------~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~   67 (155)
T cd01065           1 TDGLGFVRALEEA-------------GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELG   67 (155)
T ss_pred             CCHHHHHHHHHhh-------------CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcc
Confidence            8999999998752             234678999999999999999999999975 89999999999999998876431


Q ss_pred             --cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHH
Q 012866          351 --RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQ  428 (454)
Q Consensus       351 --~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Q  428 (454)
                        ....+..+ ...++|+||+|||.+..+. +..++....++++.+++|++|.|..|++.++++++|+.+++|++||++|
T Consensus        68 ~~~~~~~~~~-~~~~~Dvvi~~~~~~~~~~-~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~~~~~g~~~v~g~~~~~~q  145 (155)
T cd01065          68 IAIAYLDLEE-LLAEADLIINTTPVGMKPG-DELPLPPSLLKPGGVVYDVVYNPLETPLLKEARALGAKTIDGLEMLVYQ  145 (155)
T ss_pred             cceeecchhh-ccccCCEEEeCcCCCCCCC-CCCCCCHHHcCCCCEEEEcCcCCCCCHHHHHHHHCCCceeCCHHHHHHH
Confidence              12333333 3567999999999887522 3334555667889999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcC
Q 012866          429 AIGQFNLFTG  438 (454)
Q Consensus       429 a~~~f~lw~g  438 (454)
                      ++.||++|||
T Consensus       146 ~~~~~~~~~~  155 (155)
T cd01065         146 AAEAFELWTG  155 (155)
T ss_pred             HHHHHHHhcC
Confidence            9999999997

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=99.68  E-value=9.5e-17  Score=140.80  Aligned_cols=98  Identities=39%  Similarity=0.579  Sum_probs=80.1

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ++++++++|+||||+||+++++|...|+ +|+|+|||.+|+++|++.++..   ..+++++.+ .+.++|+||||||+||
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~-~~~~~DivI~aT~~~~   87 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEE-ALQEADIVINATPSGM   87 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCH-HHHTESEEEE-SSTTS
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHH-HHhhCCeEEEecCCCC
Confidence            5789999999999999999999999999 7999999999999999999543   456777664 4567999999999998


Q ss_pred             CCCCCCCCCChhcccCC----cEEEEEecCCCCC
Q 012866          376 HPNTDRVPVSEETLRDY----QLVFDAVYTPRKT  405 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~----~~v~D~~y~P~~T  405 (454)
                      .      ++..+.+.+.    .+++|+.+ |++.
T Consensus        88 ~------~i~~~~~~~~~~~~~~v~Dla~-Pr~i  114 (135)
T PF01488_consen   88 P------IITEEMLKKASKKLRLVIDLAV-PRDI  114 (135)
T ss_dssp             T------SSTHHHHTTTCHHCSEEEES-S-S-SB
T ss_pred             c------ccCHHHHHHHHhhhhceecccc-CCCC
Confidence            5      4667777665    59999986 6543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=99.64  E-value=5.1e-16  Score=147.78  Aligned_cols=126  Identities=20%  Similarity=0.230  Sum_probs=97.4

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCC---eEEEEeCC----HHHH-------HHHHHHhcCCccccccccccCCCCc
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FERA-------KSLASDVMGAARPFEDILNFQPEKG  364 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~---~v~i~nRt----~~~a-------~~la~~~~~~~~~~~~l~~~~~~~~  364 (454)
                      .++++++++|+|||++|++++..|.+.|+   +|+|+||+    .+++       +++++.++...... ++.+ .+.++
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~-~l~~-~l~~~   98 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGG-TLKE-ALKGA   98 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccC-CHHH-HHhcC
Confidence            46889999999999999999999999997   59999999    5654       55666654221111 2323 34568


Q ss_pred             cEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCc-eeccHHHHHHHHHHH
Q 012866          365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-IVSGVEMFLRQAIGQ  432 (454)
Q Consensus       365 divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~~~Gl~mlv~Qa~~~  432 (454)
                      |+|||+||.||.+.     ...+.+.+..++||++ +|..|+++++|++.|++ +.+|..|++.|+--.
T Consensus        99 dvlIgaT~~G~~~~-----~~l~~m~~~~ivf~ls-nP~~e~~~~~A~~~ga~i~a~G~~~~~~Q~nn~  161 (226)
T cd05311          99 DVFIGVSRPGVVKK-----EMIKKMAKDPIVFALA-NPVPEIWPEEAKEAGADIVATGRSDFPNQVNNV  161 (226)
T ss_pred             CEEEeCCCCCCCCH-----HHHHhhCCCCEEEEeC-CCCCcCCHHHHHHcCCcEEEeCCCCCcccccee
Confidence            99999999888541     1122344778999866 99999999999999996 999999999999544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=99.60  E-value=7.6e-15  Score=136.63  Aligned_cols=166  Identities=23%  Similarity=0.229  Sum_probs=125.1

Q ss_pred             EeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          269 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       269 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      |-||-....+..+++.+.+         .+.++++++++|+|+ |++|++++..|.+.|++|++++|+.++++++++.+.
T Consensus         3 G~~~ta~aav~~~~~~l~~---------~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~   73 (194)
T cd01078           3 GSNTTAAAAVAAAGKALEL---------MGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLR   73 (194)
T ss_pred             CcHHHHHHHHHHHHHHHHH---------hCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHH
Confidence            4567777777777776652         135678999999996 999999999999999999999999999999988764


Q ss_pred             C----Cc--c---ccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHC----
Q 012866          348 G----AA--R---PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA----  414 (454)
Q Consensus       348 ~----~~--~---~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~----  414 (454)
                      .    ..  .   +.+++.+ .+.++|+||+|||.|+...    ........+..+++|++|.|..++...+++..    
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~-~~~~~diVi~at~~g~~~~----~~~~~~~~~~~vv~D~~~~~~~~~~~~~~~~~~~~~  148 (194)
T cd01078          74 ARFGEGVGAVETSDDAARAA-AIKGADVVFAAGAAGVELL----EKLAWAPKPLAVAADVNAVPPVGIEGIDVPDKGVDR  148 (194)
T ss_pred             hhcCCcEEEeeCCCHHHHHH-HHhcCCEEEECCCCCceec----hhhhcccCceeEEEEccCCCCCCcccccccCCceec
Confidence            2    11  1   1122223 3567899999999998511    11122344567999999999999888888776    


Q ss_pred             ------CCceeccHHHHHHHHHHHHHHhc--CCCCCHHHHHHH
Q 012866          415 ------GAIIVSGVEMFLRQAIGQFNLFT--GKEAPKEFMREI  449 (454)
Q Consensus       415 ------G~~~~~Gl~mlv~Qa~~~f~lw~--g~~~p~~~~~~~  449 (454)
                            |.....|+.|.++|+... |.|.  ++..+.+.+.+.
T Consensus       149 ~g~~~~g~~~~~g~~~~~~~~~~a-e~~~~~~~~~~~~~~~~~  190 (194)
T cd01078         149 EGKVPYGAIGVGGLKMKTHRACIA-KLFESNPLVLDAEEIYDL  190 (194)
T ss_pred             CCCeEEEeeccchhHHHHHHHHHH-HHhhcCCeeechHHHHHH
Confidence                  667789999999999877 8888  666777766554

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.48  E-value=2.1e-13  Score=134.38  Aligned_cols=142  Identities=18%  Similarity=0.173  Sum_probs=105.7

Q ss_pred             EEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          267 LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       267 l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ...+|+...+-.. +...+.         .....+++++++|+|+|++|++++..|..+|++|+++||+.++.+... ..
T Consensus       125 va~~n~~~~Ae~a-i~~al~---------~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~-~~  193 (287)
T TIGR02853       125 VAIYNSIPTAEGA-IMMAIE---------HTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARIT-EM  193 (287)
T ss_pred             eEEEccHhHHHHH-HHHHHH---------hcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-HC
Confidence            5668887776221 111122         013568899999999999999999999999999999999988765543 33


Q ss_pred             cCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCcee--ccHHH
Q 012866          347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV--SGVEM  424 (454)
Q Consensus       347 ~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~--~Gl~m  424 (454)
                      +.....++++.+ .+.++|+||||+|.++.+.   .  ..+.++++.+++|+.|+|..|+| +.|+++|++++  +|+.+
T Consensus       194 g~~~~~~~~l~~-~l~~aDiVint~P~~ii~~---~--~l~~~k~~aliIDlas~Pg~tdf-~~Ak~~G~~a~~~~glPg  266 (287)
T TIGR02853       194 GLIPFPLNKLEE-KVAEIDIVINTIPALVLTA---D--VLSKLPKHAVIIDLASKPGGTDF-EYAKKRGIKALLAPGLPG  266 (287)
T ss_pred             CCeeecHHHHHH-HhccCCEEEECCChHHhCH---H--HHhcCCCCeEEEEeCcCCCCCCH-HHHHHCCCEEEEeCCCCc
Confidence            444445555555 4578999999999875321   1  12346788999999999999999 99999999987  88876


Q ss_pred             HH
Q 012866          425 FL  426 (454)
Q Consensus       425 lv  426 (454)
                      .+
T Consensus       267 ~~  268 (287)
T TIGR02853       267 IV  268 (287)
T ss_pred             cc
Confidence            65

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=99.38  E-value=1.2e-12  Score=131.43  Aligned_cols=126  Identities=18%  Similarity=0.175  Sum_probs=98.5

Q ss_pred             hHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHH-HCCC-
Q 012866          250 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGA-  327 (454)
Q Consensus       250 ~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~-~~G~-  327 (454)
                      ..+|++|+++.+  ++.|+|+|||+.|++.+..  +.             ....++++|||+|++|++.+.+|. ..++ 
T Consensus        93 ~~tG~~~ai~~d--~~~lT~~RTaa~~~laa~~--la-------------~~~~~~v~iiGaG~qA~~~~~al~~~~~i~  155 (326)
T TIGR02992        93 SRTGLLQALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDSSVVAIFGAGMQARLQLEALTLVRDIR  155 (326)
T ss_pred             CCCCCceEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCcEEEEECCCHHHHHHHHHHHHhCCcc
Confidence            356999999766  7899999999999998853  22             123578999999999999999997 4787 


Q ss_pred             eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866          328 RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       328 ~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      +|+|+||+.++++++++++..    .....+++++ .+.++|+||+|||... |     .+..++++++..+..+-
T Consensus       156 ~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~-av~~aDiVvtaT~s~~-p-----~i~~~~l~~g~~i~~vg  224 (326)
T TIGR02992       156 SARIWARDSAKAEALALQLSSLLGIDVTAATDPRA-AMSGADIIVTTTPSET-P-----ILHAEWLEPGQHVTAMG  224 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-HhccCCEEEEecCCCC-c-----EecHHHcCCCcEEEeeC
Confidence            899999999999999988742    2223445544 4578999999998632 2     36678899988887774

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK08291 ectoine utilization protein EutC; Validated

Probab=99.37  E-value=1.7e-12  Score=130.74  Aligned_cols=125  Identities=18%  Similarity=0.196  Sum_probs=96.7

Q ss_pred             hHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-CCC-
Q 012866          250 QAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-  327 (454)
Q Consensus       250 ~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~G~-  327 (454)
                      ..+|++|||+.+  +++|+|+|||+.|++.+..  +.             ....++++|+|+|++|++.+.++.. .++ 
T Consensus        96 ~~tG~~~ai~~d--~~~lt~~rT~a~~~~a~~~--la-------------~~~~~~v~IiGaG~~a~~~~~al~~~~~~~  158 (330)
T PRK08291         96 ARTGLVEALLLD--NGYLTDVRTAAAGAVAARH--LA-------------REDASRAAVIGAGEQARLQLEALTLVRPIR  158 (330)
T ss_pred             CCCCceEEEEcC--CchHHHHHHHHHHHHHHHH--hC-------------CCCCCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence            467999999766  7899999999999999863  21             1235789999999999999999985 577 


Q ss_pred             eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE
Q 012866          328 RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA  398 (454)
Q Consensus       328 ~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~  398 (454)
                      +|+|+||+.++++++++++..    ....++++++ .+.++|+||+|||... |     .+..++++++..+..+
T Consensus       159 ~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~-al~~aDiVi~aT~s~~-p-----~i~~~~l~~g~~v~~v  226 (330)
T PRK08291        159 EVRVWARDAAKAEAYAADLRAELGIPVTVARDVHE-AVAGADIIVTTTPSEE-P-----ILKAEWLHPGLHVTAM  226 (330)
T ss_pred             EEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHH-HHccCCEEEEeeCCCC-c-----EecHHHcCCCceEEee
Confidence            899999999999999987742    2222344444 4567999999998642 2     3566788888777666

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.30  E-value=4.1e-12  Score=125.86  Aligned_cols=117  Identities=19%  Similarity=0.215  Sum_probs=95.1

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.+++++|+|+|++|++++..|+.+|++|++++|+.++. +.++.++.....++++.+ .+.++|+||||+|..+   
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~-~~~~~~G~~~~~~~~l~~-~l~~aDiVI~t~p~~~---  222 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL-ARITEMGLSPFHLSELAE-EVGKIDIIFNTIPALV---  222 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH-HHHHHcCCeeecHHHHHH-HhCCCCEEEECCChhh---
Confidence            45678999999999999999999999999999999998764 344556655555555555 4578999999998643   


Q ss_pred             CCCCCCCh---hcccCCcEEEEEecCCCCCHHHHHHHHCCCcee--ccHHHHH
Q 012866          379 TDRVPVSE---ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV--SGVEMFL  426 (454)
Q Consensus       379 ~~~~~i~~---~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~--~Gl~mlv  426 (454)
                           +..   +.++++.+++|+.|+|..|.| +.|+++|++++  +|+.+.+
T Consensus       223 -----i~~~~l~~~~~g~vIIDla~~pggtd~-~~a~~~Gv~~~~~~~lpg~v  269 (296)
T PRK08306        223 -----LTKEVLSKMPPEALIIDLASKPGGTDF-EYAEKRGIKALLAPGLPGKV  269 (296)
T ss_pred             -----hhHHHHHcCCCCcEEEEEccCCCCcCe-eehhhCCeEEEEECCCCccC
Confidence                 222   246788999999999999998 89999999987  8888776

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=99.27  E-value=1.8e-11  Score=126.24  Aligned_cols=133  Identities=13%  Similarity=0.181  Sum_probs=95.7

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CCccccccccccCCCCccEEEECCCCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVM-GAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~-~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ++.+++++|+|+||||++++.+|...|+ +|+|+|||.++|++++++++ ....+++++.+ .+.++|+|||||+... |
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~-~l~~aDiVI~aT~a~~-~  255 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQ-LIKKADIIIAAVNVLE-Y  255 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHH-HhccCCEEEECcCCCC-e
Confidence            4778999999999999999999999998 89999999999999999997 55567777765 5678999999998743 1


Q ss_pred             CCCCCCCChhccc-CCcEEEEEecCCCCC-------------------HHHHHHHHCCCceeccHHHHHHHHHHHHHHhc
Q 012866          378 NTDRVPVSEETLR-DYQLVFDAVYTPRKT-------------------RLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFT  437 (454)
Q Consensus       378 ~~~~~~i~~~~l~-~~~~v~D~~y~P~~T-------------------~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~  437 (454)
                           .+..+.+. ...+++|+. .|++-                   ....+..+.....+.-.+.++.+.+..|.-|.
T Consensus       256 -----vi~~~~~~~~~~~~iDLa-vPRdidp~v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~e~~~~f~~w~  329 (414)
T PRK13940        256 -----IVTCKYVGDKPRVFIDIS-IPQALDPKLGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIVKSLEEYLEKE  329 (414)
T ss_pred             -----eECHHHhCCCCeEEEEeC-CCCCCCccccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 12332222 224666664 34321                   11111222223345567788999999999998


Q ss_pred             CCC
Q 012866          438 GKE  440 (454)
Q Consensus       438 g~~  440 (454)
                      ...
T Consensus       330 ~~~  332 (414)
T PRK13940        330 KAI  332 (414)
T ss_pred             Hhc
Confidence            543

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=99.27  E-value=1.3e-11  Score=125.61  Aligned_cols=195  Identities=18%  Similarity=0.224  Sum_probs=129.8

Q ss_pred             HHHHhhhhhcCHhHhHccceeEEEEeC-----------CCCeEEEeeccHHHHHHH--HHHHHHhcCCCCCCCCCCCCCC
Q 012866          236 EAVMKFCDEVHPLAQAIAAVNTIIRRP-----------SDGKLIGYNTDCEASITA--IEDAIKERGYKNGTASFGSPLA  302 (454)
Q Consensus       236 ~~v~~~~d~~~~~A~~igavNTi~~~~-----------~~g~l~G~NTD~~G~~~~--l~~~l~~~~~~~~~~~~~~~~~  302 (454)
                      .+|+..+.+.-..|+.-|.+.+++..-           ..-+-+|.|--.++....  .++.             ..+++
T Consensus       111 ~QILGQVK~Ay~~a~~~g~~g~~L~~lFqkAi~~gKrvRseT~I~~~~VSi~saAv~lA~~~-------------~~~L~  177 (414)
T COG0373         111 TQILGQVKDAYAKAQENGTLGKVLNRLFQKAISVGKRVRSETGIGKGAVSISSAAVELAKRI-------------FGSLK  177 (414)
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhcccCCCCCccchHHHHHHHHHHH-------------hcccc
Confidence            456666666666777777666655320           012345555555554332  1221             13478


Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      ++++||||||.|+..++.+|.+.|+ +|+|+|||.+||++||++++..+++++++.+ .+.++|+||.+|+... |....
T Consensus       178 ~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~-~l~~~DvVissTsa~~-~ii~~  255 (414)
T COG0373         178 DKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLE-ALAEADVVISSTSAPH-PIITR  255 (414)
T ss_pred             cCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHH-hhhhCCEEEEecCCCc-cccCH
Confidence            9999999999999999999999998 9999999999999999999988889999887 7889999999998632 22111


Q ss_pred             CCCChhccc-CCcEEEEEecCCCCCH---------------HHHHH----HHCCCceeccHHHHHHHHHHHHHHhcCCCC
Q 012866          382 VPVSEETLR-DYQLVFDAVYTPRKTR---------------LLKDA----EAAGAIIVSGVEMFLRQAIGQFNLFTGKEA  441 (454)
Q Consensus       382 ~~i~~~~l~-~~~~v~D~~y~P~~T~---------------ll~~A----~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~  441 (454)
                      ..+...+-. ...+++|+. .|++.+               -++..    .+..-....-.+.++++.+..|..|....-
T Consensus       256 ~~ve~a~~~r~~~livDia-vPRdie~~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~~~ae~iIeee~~~~~~~l~~~~  334 (414)
T COG0373         256 EMVERALKIRKRLLIVDIA-VPRDVEPEVGELPNVFLYTIDDLEEIVEENLEARKEEAAKAEAIIEEELAEFMEWLKKLE  334 (414)
T ss_pred             HHHHHHHhcccCeEEEEec-CCCCCCccccCcCCeEEEehhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            111111111 225889997 465421               12222    222334566677889999999999986544


Q ss_pred             CHHHH
Q 012866          442 PKEFM  446 (454)
Q Consensus       442 p~~~~  446 (454)
                      -.+.+
T Consensus       335 ~~~~i  339 (414)
T COG0373         335 VVPTI  339 (414)
T ss_pred             chHHH
Confidence            44433

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=99.24  E-value=8.5e-12  Score=129.73  Aligned_cols=189  Identities=22%  Similarity=0.296  Sum_probs=131.5

Q ss_pred             chHHHHhhhhhcCHhHhHccceeEEEEeC-----CCCeEEEeeccHHHHHH-----HHHHHHHhcCCCCCCCCCCCCCCC
Q 012866          234 YKEAVMKFCDEVHPLAQAIAAVNTIIRRP-----SDGKLIGYNTDCEASIT-----AIEDAIKERGYKNGTASFGSPLAG  303 (454)
Q Consensus       234 ~K~~v~~~~d~~~~~A~~igavNTi~~~~-----~~g~l~G~NTD~~G~~~-----~l~~~l~~~~~~~~~~~~~~~~~~  303 (454)
                      =+.+|+.+|++....|+..|++|+++..-     .-++..+++|+..+.-.     +++....          ...++.+
T Consensus       113 GE~qIlgQvk~a~~~a~~~g~~g~~l~~lf~~a~~~~k~v~~~t~i~~~~~Sv~~~Av~~a~~----------~~~~~~~  182 (423)
T PRK00045        113 GEPQILGQVKDAYALAQEAGTVGTILNRLFQKAFSVAKRVRTETGIGAGAVSVASAAVELAKQ----------IFGDLSG  182 (423)
T ss_pred             CChHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhhHhhhcCCCCCCcCHHHHHHHHHHH----------hhCCccC
Confidence            36788999999999999999999988310     13567777777655321     2221110          0013678


Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      ++++|+|+|++|+.++..|...|+ +|+++||+.++++++++.++....+++++.+ .+.++|+||+||+... |     
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVI~aT~s~~-~-----  255 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPE-ALAEADIVISSTGAPH-P-----  255 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHH-HhccCCEEEECCCCCC-c-----
Confidence            999999999999999999999998 8999999999999999998765555555544 4567999999997532 1     


Q ss_pred             CCChhccc--------CCcEEEEEecCCCCCH---------------HHHH----HHHCCCceeccHHHHHHHHHHHHHH
Q 012866          383 PVSEETLR--------DYQLVFDAVYTPRKTR---------------LLKD----AEAAGAIIVSGVEMFLRQAIGQFNL  435 (454)
Q Consensus       383 ~i~~~~l~--------~~~~v~D~~y~P~~T~---------------ll~~----A~~~G~~~~~Gl~mlv~Qa~~~f~l  435 (454)
                      .+..++++        ...+++|+. .|++..               -+++    ..+.....+.-.+-++.+.+..|.-
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla-~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~f~~  334 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLA-VPRDIEPEVGELPGVYLYDVDDLQEIVEENLAQRQEAAEKAEAIVEEEVAEFME  334 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeC-CCCCCcccccccCCeEEEEHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            24444442        346899997 455311               1111    1112233455667789999999999


Q ss_pred             hcCCC
Q 012866          436 FTGKE  440 (454)
Q Consensus       436 w~g~~  440 (454)
                      |....
T Consensus       335 ~~~~~  339 (423)
T PRK00045        335 WLRSL  339 (423)
T ss_pred             HHHhc
Confidence            98654

>PLN00203 glutamyl-tRNA reductase

Probab=98.85  E-value=1.2e-08  Score=107.94  Aligned_cols=187  Identities=14%  Similarity=0.225  Sum_probs=121.2

Q ss_pred             hHHHHhhhhhcCHhHhHccceeEEEEeC-----------CCCeEEEeeccHHH--HHHHHHHHHHhcCCCCCCCCCCCCC
Q 012866          235 KEAVMKFCDEVHPLAQAIAAVNTIIRRP-----------SDGKLIGYNTDCEA--SITAIEDAIKERGYKNGTASFGSPL  301 (454)
Q Consensus       235 K~~v~~~~d~~~~~A~~igavNTi~~~~-----------~~g~l~G~NTD~~G--~~~~l~~~l~~~~~~~~~~~~~~~~  301 (454)
                      -.+|+..+.+.-..|+..|.++.++.+-           .+.+-+|.+-=..+  .+...++.++           ..++
T Consensus       196 E~QIlgQVK~A~~~A~~~g~~g~~L~~LF~~Ai~~~KrVRteT~I~~~~vSv~s~Av~la~~~~~-----------~~~l  264 (519)
T PLN00203        196 EGQILAQVKQVVKVGQGVDGFGRNLSGLFKHAITAGKRVRTETNIASGAVSVSSAAVELALMKLP-----------ESSH  264 (519)
T ss_pred             ChHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHHHHHHhcC-----------CCCC
Confidence            4578888888899999999888776430           01112222222222  1222222111           1237


Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      .+++++|||+|++|++++.+|...|+ +|+|+||+.++++.++++++..   ..+++++.+ .+.++|+||+||+.+. |
T Consensus       265 ~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~-al~~aDVVIsAT~s~~-p  342 (519)
T PLN00203        265 ASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLA-CAAEADVVFTSTSSET-P  342 (519)
T ss_pred             CCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHH-HHhcCCEEEEccCCCC-C
Confidence            78999999999999999999999998 8999999999999999988532   234455544 4578999999998653 2


Q ss_pred             CCCCCCCChhccc----------CCcEEEEEecCCCCC-------------------HHHHHHHHCCCceeccHHHHHHH
Q 012866          378 NTDRVPVSEETLR----------DYQLVFDAVYTPRKT-------------------RLLKDAEAAGAIIVSGVEMFLRQ  428 (454)
Q Consensus       378 ~~~~~~i~~~~l~----------~~~~v~D~~y~P~~T-------------------~ll~~A~~~G~~~~~Gl~mlv~Q  428 (454)
                           .+..++++          ...+++|+.- |++.                   ....+.++.......-.+.+|.+
T Consensus       343 -----vI~~e~l~~~~~~~~~~~~~~~~IDLAv-PRdIdp~v~~l~~v~lydiDdL~~i~~~n~~~R~~~~~~Ae~II~e  416 (519)
T PLN00203        343 -----LFLKEHVEALPPASDTVGGKRLFVDISV-PRNVGACVSELESARVYNVDDLKEVVAANKEDRLRKAMEAQTIIRE  416 (519)
T ss_pred             -----eeCHHHHHHhhhcccccCCCeEEEEeCC-CCCCccccccCCCCeEEEeccHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence                 23333331          1247778763 4421                   11122222233345667788999


Q ss_pred             HHHHHHHhcCCC
Q 012866          429 AIGQFNLFTGKE  440 (454)
Q Consensus       429 a~~~f~lw~g~~  440 (454)
                      .+..|.-|....
T Consensus       417 e~~~F~~w~~~~  428 (519)
T PLN00203        417 ESKNFEAWRDSL  428 (519)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998654

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.81  E-value=1.6e-08  Score=105.15  Aligned_cols=134  Identities=24%  Similarity=0.343  Sum_probs=96.2

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      .+.+++++|+|+|.+|+.++..|...|+ +|+++||+.++++++++.++...++++++.+ .+.++|+||+||+... | 
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~-~l~~aDvVi~aT~s~~-~-  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEE-YLAEADIVISSTGAPH-P-  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHH-HHhhCCEEEECCCCCC-c-
Confidence            3678999999999999999999999996 9999999999999999998765555566555 4568999999997532 1 


Q ss_pred             CCCCCCChhcccC-------CcEEEEEecCCCCCH---------------HHHHHHHC----CCceeccHHHHHHHHHHH
Q 012866          379 TDRVPVSEETLRD-------YQLVFDAVYTPRKTR---------------LLKDAEAA----GAIIVSGVEMFLRQAIGQ  432 (454)
Q Consensus       379 ~~~~~i~~~~l~~-------~~~v~D~~y~P~~T~---------------ll~~A~~~----G~~~~~Gl~mlv~Qa~~~  432 (454)
                          .+..+++.+       ..+++|+. .|++..               -+++.-+.    ....+.-.+-++.+.+..
T Consensus       254 ----ii~~e~l~~~~~~~~~~~~viDla-~Prdid~~v~~l~~v~l~~vDdl~~~~~~n~~~r~~~~~~a~~ii~~~~~~  328 (417)
T TIGR01035       254 ----IVSKEDVERALRERTRPLFIIDIA-VPRDVDPAVARLEGVFLYDVDDLQPVVEENLAERREEAEKAEEIVEEETAE  328 (417)
T ss_pred             ----eEcHHHHHHHHhcCCCCeEEEEeC-CCCCCChhhcCcCCeEEEEHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                244444421       24899998 565321               11222121    222355566788899999


Q ss_pred             HHHhcCCCC
Q 012866          433 FNLFTGKEA  441 (454)
Q Consensus       433 f~lw~g~~~  441 (454)
                      |.-|.....
T Consensus       329 f~~w~~~~~  337 (417)
T TIGR01035       329 FKQWLRSLE  337 (417)
T ss_pred             HHHHHHhcc
Confidence            999986543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.74  E-value=4.9e-07  Score=88.46  Aligned_cols=214  Identities=15%  Similarity=0.212  Sum_probs=131.4

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCH
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHP  247 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  247 (454)
                      .-++| +|-+++.-- .--+..+++|++.....++-+    ++...++.+ .++++.|+.|-.|.-..+  ...++.+++
T Consensus        37 ii~vg~~~as~~Yv~-~k~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p  115 (286)
T PRK14175         37 VILVGNDGASQSYVR-SKKKAAEKIGMISEIVHLEETATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINP  115 (286)
T ss_pred             EEEeCCCHHHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence            34455 444443222 234678999999887777652    566677766 578899999999964322  112222222


Q ss_pred             hHhHccceeEEEEeCCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866          248 LAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG  321 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~  321 (454)
                      . +.+-..+..-    -|+++ |    .-.--.|++..|+.             .+.+++||+|+|+|.|+ +|+.++..
T Consensus       116 ~-KDVDGl~~~n----~g~l~~~~~~~~PcTp~ai~~ll~~-------------~~i~l~Gk~vvVIGrs~~VG~pla~l  177 (286)
T PRK14175        116 E-KDVDGFHPIN----IGKLYIDEQTFVPCTPLGIMEILKH-------------ADIDLEGKNAVVIGRSHIVGQPVSKL  177 (286)
T ss_pred             c-cCcccCCccc----hHhHhcCCCCCCCCcHHHHHHHHHH-------------cCCCCCCCEEEEECCCchhHHHHHHH
Confidence            1 1111122110    01221 1    11234456665543             23679999999999998 99999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      |...|+.|+++++....                 +.+ ...++|+||+|++.   |.    .+..++++++.+|+|+..+
T Consensus       178 L~~~gatVtv~~s~t~~-----------------l~~-~~~~ADIVIsAvg~---p~----~i~~~~vk~gavVIDvGi~  232 (286)
T PRK14175        178 LLQKNASVTILHSRSKD-----------------MAS-YLKDADVIVSAVGK---PG----LVTKDVVKEGAVIIDVGNT  232 (286)
T ss_pred             HHHCCCeEEEEeCCchh-----------------HHH-HHhhCCEEEECCCC---Cc----ccCHHHcCCCcEEEEcCCC
Confidence            99999999999985321                 112 34678999999975   22    4778899999999999988


Q ss_pred             CC-------CCHHHHHHHHC-CC-c-eeccH-----HHHHHHHHHHHH
Q 012866          402 PR-------KTRLLKDAEAA-GA-I-IVSGV-----EMFLRQAIGQFN  434 (454)
Q Consensus       402 P~-------~T~ll~~A~~~-G~-~-~~~Gl-----~mlv~Qa~~~f~  434 (454)
                      |.       +..+ ..+++. ++ . +-+|.     -||+.+.+.+.+
T Consensus       233 ~~~~gkl~GDvd~-~~~~~~a~~iTPVPGGVGp~T~a~L~~n~~~a~~  279 (286)
T PRK14175        233 PDENGKLKGDVDY-DAVKEIAGAITPVPGGVGPLTITMVLNNTLLAEK  279 (286)
T ss_pred             cCCCCCeecCccH-HHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            72       2332 333333 22 2 33444     377777776654

>PRK06141 ornithine cyclodeaminase; Validated

Probab=98.72  E-value=5.1e-08  Score=97.57  Aligned_cols=136  Identities=20%  Similarity=0.208  Sum_probs=92.1

Q ss_pred             CeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHH
Q 012866          265 GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSL  342 (454)
Q Consensus       265 g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~l  342 (454)
                      +.+.+.-|=..+.+..  +.|.             ....++++|||+|++|++++.++.. .+. +|+|+||++++++++
T Consensus       102 ~~lT~~RTaa~sala~--~~La-------------~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~  166 (314)
T PRK06141        102 TELTARRTAAASALAA--SYLA-------------RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEAL  166 (314)
T ss_pred             cchhcchhHHHHHHHH--HHhC-------------CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHH
Confidence            3566777766665443  1132             2346899999999999999987775 566 899999999999999


Q ss_pred             HHHhcC---CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC--CCCHHHHHHHHCCCc
Q 012866          343 ASDVMG---AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP--RKTRLLKDAEAAGAI  417 (454)
Q Consensus       343 a~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P--~~T~ll~~A~~~G~~  417 (454)
                      ++++..   .....++..+ .+.++|+||+||+.. .|     .+..++++++. ++|+++..  ....+-.+..+++..
T Consensus       167 a~~~~~~g~~~~~~~~~~~-av~~aDIVi~aT~s~-~p-----vl~~~~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~  238 (314)
T PRK06141        167 AAELRAQGFDAEVVTDLEA-AVRQADIISCATLST-EP-----LVRGEWLKPGT-HLDLVGNFTPDMRECDDEAIRRASV  238 (314)
T ss_pred             HHHHHhcCCceEEeCCHHH-HHhcCCEEEEeeCCC-CC-----EecHHHcCCCC-EEEeeCCCCcccccCCHHHHhcCcE
Confidence            998742   1222334443 456899999999954 12     26678888887 78888752  222222344455556


Q ss_pred             eeccHH
Q 012866          418 IVSGVE  423 (454)
Q Consensus       418 ~~~Gl~  423 (454)
                      +++=.+
T Consensus       239 ~vD~~~  244 (314)
T PRK06141        239 YVDTRA  244 (314)
T ss_pred             EEcCHH
Confidence            666554

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=98.66  E-value=5.1e-08  Score=98.98  Aligned_cols=125  Identities=22%  Similarity=0.271  Sum_probs=93.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC--c--ccccc---ccccCCCCccEEEECCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA--A--RPFED---ILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~--~--~~~~~---l~~~~~~~~divInat~~g~  375 (454)
                      +++||||+|+.|++++.-|++.|- +|+|.+||.+++.+++...+.+  +  ++..+   +.+ .+.+.|+|||+.|.-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~-li~~~d~VIn~~p~~~   80 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVA-LIKDFDLVINAAPPFV   80 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHH-HHhcCCEEEEeCCchh
Confidence            579999999999999999999995 9999999999999997775322  2  22222   333 4667799999998421


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEecCCCC-CHHHHHHHHCCCceeccHH-------HHHHHHHHHHH
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIVSGVE-------MFLRQAIGQFN  434 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-T~ll~~A~~~G~~~~~Gl~-------mlv~Qa~~~f~  434 (454)
                          + ..+.+.+++.+.-++|++|.+.. -.+-.+|++.|..++.|.+       .++.+++.+|.
T Consensus        81 ----~-~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~a~~~~~  142 (389)
T COG1748          81 ----D-LTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAYAAKELF  142 (389)
T ss_pred             ----h-HHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHHHHHHhh
Confidence                1 12445678888889999998654 4456688899988775544       66777777765

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.63  E-value=3.9e-08  Score=98.28  Aligned_cols=98  Identities=26%  Similarity=0.438  Sum_probs=75.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      +.+++++|+|+|.+|+.++..|...|+ +|+++||+.+++++++++++....+++++.+ .+.++|+||.||+....   
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~-~l~~aDvVi~at~~~~~---  251 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLE-LLNEADVVISATGAPHY---  251 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHH-HHhcCCEEEECCCCCch---
Confidence            678999999999999999999999887 8999999999999999999876555555554 45679999999986431   


Q ss_pred             CCCCCChhcc----cCCcEEEEEecCCCCC
Q 012866          380 DRVPVSEETL----RDYQLVFDAVYTPRKT  405 (454)
Q Consensus       380 ~~~~i~~~~l----~~~~~v~D~~y~P~~T  405 (454)
                       . .+....+    .++.+++|+. .|++.
T Consensus       252 -~-~~~~~~~~~~~~~~~~viDla-vPrdi  278 (311)
T cd05213         252 -A-KIVERAMKKRSGKPRLIVDLA-VPRDI  278 (311)
T ss_pred             -H-HHHHHHHhhCCCCCeEEEEeC-CCCCC
Confidence             0 0111111    2457999999 67654

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.59  E-value=2.4e-06  Score=84.14  Aligned_cols=203  Identities=15%  Similarity=0.187  Sum_probs=128.2

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -++.+++|++..-..++-    +++.+.++.| .++.+.|+.|-+|.-..+  ...++.++|. +.+-..+..-    -|
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g  129 (301)
T PRK14194         55 ILRAEEAGIRSLEHRLPADTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL-KDVDGFHSEN----VG  129 (301)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch-hccCccChhh----hh
Confidence            467899999987777754    2577777777 578899999999964211  1111111111 1111111110    01


Q ss_pred             eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++ .|.    -.--.|+++.|+.             .+.+++||+++|||.| -+|+.++..|.+.|+.|++++|+....
T Consensus       130 ~l~~~~~~~~PcTp~aii~lL~~-------------~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~~l  196 (301)
T PRK14194        130 GLSQGRDVLTPCTPSGCLRLLED-------------TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRSTDA  196 (301)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHH-------------hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCCCH
Confidence            11 111    1225566666554             2468999999999996 889999999999999999998864322


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC----------CCHHHH
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR----------KTRLLK  409 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~----------~T~ll~  409 (454)
                      ++                  ...++|+||.+++..       ..+..++++++.+|+|+..++.          +-.|-.
T Consensus       197 ~e------------------~~~~ADIVIsavg~~-------~~v~~~~ik~GaiVIDvgin~~~~~g~~kl~GDvdf~~  251 (301)
T PRK14194        197 KA------------------LCRQADIVVAAVGRP-------RLIDADWLKPGAVVIDVGINRIDDDGRSRLVGDVDFDS  251 (301)
T ss_pred             HH------------------HHhcCCEEEEecCCh-------hcccHhhccCCcEEEEecccccCCCCCcceecccchHH
Confidence            21                  234689999888642       2366788999999999987752          123322


Q ss_pred             HHHHCCCc--eeccHH-----HHHHHHHHHHHHhcC
Q 012866          410 DAEAAGAI--IVSGVE-----MFLRQAIGQFNLFTG  438 (454)
Q Consensus       410 ~A~~~G~~--~~~Gl~-----mlv~Qa~~~f~lw~g  438 (454)
                      ..+..++.  +-+|.+     ||+...+.+.+.|.-
T Consensus       252 ~~~~a~~iTPVPGGVGp~Tva~L~~N~~~a~~~~~~  287 (301)
T PRK14194        252 ALPVVSAITPVPGGVGPMTIAFLMKNTVTAARLQAH  287 (301)
T ss_pred             HHhhcceecCCCCchhHHHHHHHHHHHHHHHHHHHH
Confidence            23334433  234654     888888888887764

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.55  E-value=1.3e-06  Score=81.66  Aligned_cols=148  Identities=16%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF  353 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~  353 (454)
                      +.|...+++..+...       ..+.+++|++++|+|.|.+|+.++..|.+.|++|++++++.++.+++++.++...++.
T Consensus         6 g~Gv~~~~~~~~~~~-------~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~   78 (200)
T cd01075           6 AYGVFLGMKAAAEHL-------LGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP   78 (200)
T ss_pred             HHHHHHHHHHHHHHh-------cCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc
Confidence            567777777665521       0135789999999999999999999999999999999999999999988876554444


Q ss_pred             ccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc--CCcEEEEEecCCCCC-HHHHHHHHCCCceeccHHHHHHHHH
Q 012866          354 EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKT-RLLKDAEAAGAIIVSGVEMFLRQAI  430 (454)
Q Consensus       354 ~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T-~ll~~A~~~G~~~~~Gl~mlv~Qa~  430 (454)
                      +++..   .++|++++|+.-+.        +..+.++  +..++++-.-+|... .--+.-+++|+.+++..-....-.+
T Consensus        79 ~~l~~---~~~Dv~vp~A~~~~--------I~~~~~~~l~~~~v~~~AN~~~~~~~~~~~L~~~Gi~~~Pd~~~NaGGv~  147 (200)
T cd01075          79 EEIYS---VDADVFAPCALGGV--------INDDTIPQLKAKAIAGAANNQLADPRHGQMLHERGILYAPDYVVNAGGLI  147 (200)
T ss_pred             hhhcc---ccCCEEEecccccc--------cCHHHHHHcCCCEEEECCcCccCCHhHHHHHHHCCCEEeCceeeeCcCce
Confidence            44322   36899998876432        3333322  346788888777642 3334445789887763322222233


Q ss_pred             HHHHHhcCC
Q 012866          431 GQFNLFTGK  439 (454)
Q Consensus       431 ~~f~lw~g~  439 (454)
                      ..+-.|.|.
T Consensus       148 ~~~~e~~~~  156 (200)
T cd01075         148 NVADELYGG  156 (200)
T ss_pred             eehhHHhCC
Confidence            344555553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.52  E-value=6.3e-07  Score=81.36  Aligned_cols=78  Identities=21%  Similarity=0.229  Sum_probs=63.6

Q ss_pred             CCCCCceEEEEccchh-HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~-arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      .++++++++|+|+|++ |+.++..|.+.|++|+++||+.+..                 .+ .+.++|+||+||+..   
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~~~l-----------------~~-~l~~aDiVIsat~~~---   98 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKTKNL-----------------KE-HTKQADIVIVAVGKP---   98 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCchhH-----------------HH-HHhhCCEEEEcCCCC---
Confidence            4689999999999996 8889999999999999999985322                 22 346789999999863   


Q ss_pred             CCCCCCCChhcccCCcEEEEEecC
Q 012866          378 NTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      +    .+..+.++++.+++|+.-.
T Consensus        99 ~----ii~~~~~~~~~viIDla~p  118 (168)
T cd01080          99 G----LVKGDMVKPGAVVIDVGIN  118 (168)
T ss_pred             c----eecHHHccCCeEEEEccCC
Confidence            1    4777888888999999853

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.49  E-value=4.6e-06  Score=81.55  Aligned_cols=202  Identities=16%  Similarity=0.253  Sum_probs=127.7

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+.++++|++.....++.    +++.+.++.+ .+++..|+.|-+|+...+  ...++.+++. +.+-..+-. +   -|
T Consensus        55 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~-n---~g  129 (285)
T PRK10792         55 RKACEEVGFVSRSYDLPETTSEAELLALIDELNADPTIDGILVQLPLPAHIDNVKVLERIHPD-KDVDGFHPY-N---VG  129 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccCccChh-h---Hh
Confidence            467899999988777753    3677777777 577899999999975321  1111111111 111111100 0   01


Q ss_pred             eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++ .|    .----.|++..|+.             .+.+++||+++|+|-|. .|+.++.-|...|+.|+++.+...  
T Consensus       130 ~l~~~~~~~~PcTp~av~~ll~~-------------~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T~--  194 (285)
T PRK10792        130 RLAQRIPLLRPCTPRGIMTLLER-------------YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFTK--  194 (285)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCCC--
Confidence            11 11    11234566666543             24678999999999997 799999999999999999987522  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-------CCHHHHHHH
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAE  412 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-------~T~ll~~A~  412 (454)
                                     ++.+ ...++|+||+|++.   |.    .+..++++++.+|+|+-.++.       +..| +.++
T Consensus       195 ---------------~l~~-~~~~ADIvi~avG~---p~----~v~~~~vk~gavVIDvGin~~~~gk~~GDvd~-~~~~  250 (285)
T PRK10792        195 ---------------NLRH-HVRNADLLVVAVGK---PG----FIPGEWIKPGAIVIDVGINRLEDGKLVGDVEF-ETAA  250 (285)
T ss_pred             ---------------CHHH-HHhhCCEEEEcCCC---cc----cccHHHcCCCcEEEEcccccccCCCcCCCcCH-HHHH
Confidence                           2222 34678999999853   22    477899999999999987752       2333 2333


Q ss_pred             HC-CC-c-eecc-----HHHHHHHHHHHHHHhcC
Q 012866          413 AA-GA-I-IVSG-----VEMFLRQAIGQFNLFTG  438 (454)
Q Consensus       413 ~~-G~-~-~~~G-----l~mlv~Qa~~~f~lw~g  438 (454)
                      +. .+ . +-+|     .-||+...+.+.+.|..
T Consensus       251 ~~a~~itPvPGGVGp~T~a~L~~N~~~a~~~~~~  284 (285)
T PRK10792        251 ERASWITPVPGGVGPMTVATLLENTLQACEEYHD  284 (285)
T ss_pred             hhccCcCCCCCCChHHHHHHHHHHHHHHHHHhhc
Confidence            32 22 2 2233     34888888888877753

>PRK08618 ornithine cyclodeaminase; Validated

Probab=98.47  E-value=4.3e-07  Score=91.39  Aligned_cols=89  Identities=20%  Similarity=0.288  Sum_probs=69.1

Q ss_pred             CCceEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~-~~G~-~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ..++++|+|+|++|++.+.++. ..++ +|.|+||++++++++++++..    ....++++++ .+.++|+||+|||.+ 
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~aDiVi~aT~s~-  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADE-AIEEADIIVTVTNAK-  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEccCCC-
Confidence            4678999999999999998876 4688 999999999999999987632    2223455544 457899999999975 


Q ss_pred             CCCCCCCCCChhcccCCcEEEEE
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDA  398 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~  398 (454)
                      .|     .+. ++++++..|.-+
T Consensus       204 ~p-----~i~-~~l~~G~hV~~i  220 (325)
T PRK08618        204 TP-----VFS-EKLKKGVHINAV  220 (325)
T ss_pred             Cc-----chH-HhcCCCcEEEec
Confidence            23     367 889888877655

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.46  E-value=5.7e-07  Score=92.02  Aligned_cols=99  Identities=21%  Similarity=0.291  Sum_probs=74.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----cccccccccCCCCccEEEECCCC-CC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDILNFQPEKGAILANATPL-GM  375 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~l~~~~~~~~divInat~~-g~  375 (454)
                      +.+++|+|+|+|++|+.++..|..+|++|++++|+.++++.++..++...    .+.+++.+ .+.++|+||||++. |.
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~-~l~~aDvVI~a~~~~g~  243 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIED-AVKRADLLIGAVLIPGA  243 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHH-HHccCCEEEEccccCCC
Confidence            45678999999999999999999999999999999999998888776421    12233444 45679999999865 32


Q ss_pred             CCCCCCCCCChhc---ccCCcEEEEEecCCC
Q 012866          376 HPNTDRVPVSEET---LRDYQLVFDAVYTPR  403 (454)
Q Consensus       376 ~p~~~~~~i~~~~---l~~~~~v~D~~y~P~  403 (454)
                      .   .+..+..+.   ++++.+++|+.+.|.
T Consensus       244 ~---~p~lit~~~l~~mk~g~vIvDva~d~G  271 (370)
T TIGR00518       244 K---APKLVSNSLVAQMKPGAVIVDVAIDQG  271 (370)
T ss_pred             C---CCcCcCHHHHhcCCCCCEEEEEecCCC
Confidence            1   111244443   567899999998765

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=98.43  E-value=2e-06  Score=85.72  Aligned_cols=96  Identities=21%  Similarity=0.157  Sum_probs=69.9

Q ss_pred             CCCceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCCccc--cccccccCCCCccEEEECCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGAARP--FEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~~~~--~~~l~~~~~~~~divInat~~g~~  376 (454)
                      ...++++|+|+|++|++.+.++.. .+. +|.|+||+.++++++++++......  .+++++ .+.++|+||+|||... 
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~-av~~aDiVitaT~s~~-  200 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEA-IPEAVDLVVTATTSRT-  200 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHH-HhhcCCEEEEccCCCC-
Confidence            346899999999999999999975 677 8999999999999999988532111  234444 4578999999999642 


Q ss_pred             CCCCCCCCChhcccCCcEEEEE-ecCCCC
Q 012866          377 PNTDRVPVSEETLRDYQLVFDA-VYTPRK  404 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~-~y~P~~  404 (454)
                      |.     +. .+++++..+.=+ .|.|..
T Consensus       201 Pl-----~~-~~~~~g~hi~~iGs~~p~~  223 (304)
T PRK07340        201 PV-----YP-EAARAGRLVVAVGAFTPDM  223 (304)
T ss_pred             ce-----eC-ccCCCCCEEEecCCCCCCc
Confidence            22     33 367777655555 344543

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.39  E-value=9.8e-06  Score=79.27  Aligned_cols=202  Identities=17%  Similarity=0.236  Sum_probs=124.6

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+.++++|++.....++-    +++.+.++.| .++.+.|+.|-.|+-..+  ...++.++|. +.+-..+-.    +-|
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~-KDVDGl~~~----N~g  128 (284)
T PRK14179         54 ERSALAAGFKSEVVRLPETISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK-KDVDGFHPM----NTG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-ccccccCHh----hHH
Confidence            468899999988777764    3577777777 577899999999974322  1111111111 111101000    001


Q ss_pred             eEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      +++ |    .----.|++..|+.             .+.+++||+++|||. |-+|+.++..|.+.|+.|+++.....  
T Consensus       129 ~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t~--  193 (284)
T PRK14179        129 HLWSGRPVMIPCTPAGIMEMFRE-------------YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRTR--  193 (284)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCCC--
Confidence            111 0    01234556665543             246799999999998 78899999999999999999842211  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-------CCHHHHHHH
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDAE  412 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-------~T~ll~~A~  412 (454)
                                     ++.+ ...++|+||.+++.   |    ..+..++++++.+|+|+..++.       +-.|-...+
T Consensus       194 ---------------~l~~-~~~~ADIVI~avg~---~----~~v~~~~ik~GavVIDvgin~~~~gkl~GDVdf~~v~~  250 (284)
T PRK14179        194 ---------------NLAE-VARKADILVVAIGR---G----HFVTKEFVKEGAVVIDVGMNRDENGKLIGDVDFDEVAE  250 (284)
T ss_pred             ---------------CHHH-HHhhCCEEEEecCc---c----ccCCHHHccCCcEEEEecceecCCCCeecCccHHHHHh
Confidence                           1222 24568999988863   2    2477789999999999988762       122222222


Q ss_pred             HCCC--ceeccHH-----HHHHHHHHHHHHhc
Q 012866          413 AAGA--IIVSGVE-----MFLRQAIGQFNLFT  437 (454)
Q Consensus       413 ~~G~--~~~~Gl~-----mlv~Qa~~~f~lw~  437 (454)
                      ..++  ++-+|.+     ||+...+.+.+.|.
T Consensus       251 ~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~  282 (284)
T PRK14179        251 VASYITPVPGGVGPMTITMLMEQTYQAALRSL  282 (284)
T ss_pred             hccEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            2333  2334544     88888888877775

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.37  E-value=3.8e-06  Score=67.54  Aligned_cols=80  Identities=31%  Similarity=0.491  Sum_probs=62.1

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCcc
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAAR  351 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~  351 (454)
                      .+.|.+..|++...         ..+..+++++++|+|+|++|+.++..|.+.|. +|++++|                 
T Consensus         2 t~~~~~~~l~~~~~---------~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-----------------   55 (86)
T cd05191           2 TAAGAVALLKAAGK---------VTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-----------------   55 (86)
T ss_pred             hhHHHHHHHHHHHH---------HhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-----------------
Confidence            35677777776543         12356789999999999999999999999965 9999998                 


Q ss_pred             ccccccccCCCCccEEEECCCCCCCCCCCCCCCCh---hcccCCcEEEEE
Q 012866          352 PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSE---ETLRDYQLVFDA  398 (454)
Q Consensus       352 ~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~---~~l~~~~~v~D~  398 (454)
                                   |++|+||+.+.       ++.+   +.+.++.+++|+
T Consensus        56 -------------di~i~~~~~~~-------~~~~~~~~~~~~~~~v~~~   85 (86)
T cd05191          56 -------------DILVTATPAGV-------PVLEEATAKINEGAVVIDL   85 (86)
T ss_pred             -------------CEEEEcCCCCC-------CchHHHHHhcCCCCEEEec
Confidence                         89999998643       2333   456778899986

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.36  E-value=5.5e-06  Score=81.05  Aligned_cols=202  Identities=18%  Similarity=0.261  Sum_probs=125.6

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -+.++++|++.....++-    +++.+.++.+ .+.++.|+.|-.|.-..+  ...++.+++. +.+-..+.. +   -|
T Consensus        54 ~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~-KDVDGl~~~-n---~g  128 (285)
T PRK14189         54 VKACEDNGFHSLKDRYPADLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE-KDVDGFHVA-N---AG  128 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc-cCcccCChh-h---hh
Confidence            467899999988777764    3577777777 577899999999974211  1111111111 111111110 0   01


Q ss_pred             eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchh-HHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~-arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      +++ |.    =.--.|+++.|+.             .+.+++||+|+|+|.|+. |+.++.-|...|+.|+++.+...  
T Consensus       129 ~l~~~~~~~~PcTp~aii~lL~~-------------~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t~--  193 (285)
T PRK14189        129 ALMTGQPLFRPCTPYGVMKMLES-------------IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKTR--  193 (285)
T ss_pred             HhhCCCCCCcCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCCC--
Confidence            111 11    1224566666543             246799999999999988 99999999999999998865321  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-C------CHHHHHHH
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-K------TRLLKDAE  412 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-~------T~ll~~A~  412 (454)
                                     ++.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++. +      ..+-...+
T Consensus       194 ---------------~l~~-~~~~ADIVV~avG~---~~----~i~~~~ik~gavVIDVGin~~~~gkl~GDVd~~~v~~  250 (285)
T PRK14189        194 ---------------DLAA-HTRQADIVVAAVGK---RN----VLTADMVKPGATVIDVGMNRDDAGKLCGDVDFAGVKE  250 (285)
T ss_pred             ---------------CHHH-HhhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEccccccCCCCeeCCccHHHHHh
Confidence                           2222 35679999998873   32    478899999999999988763 1      12212222


Q ss_pred             HCCC--ceeccHH-----HHHHHHHHHHHHhc
Q 012866          413 AAGA--IIVSGVE-----MFLRQAIGQFNLFT  437 (454)
Q Consensus       413 ~~G~--~~~~Gl~-----mlv~Qa~~~f~lw~  437 (454)
                      ..++  ++-+|.+     ||+.+.+.+.+-+.
T Consensus       251 ~a~~iTPVPGGVGp~T~a~Ll~N~~~a~~~~~  282 (285)
T PRK14189        251 VAGYITPVPGGVGPMTITMLLVNTIEAAERAA  282 (285)
T ss_pred             hceEecCCCCCchHHHHHHHHHHHHHHHHHhh
Confidence            2333  2334544     77777776665443

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.35  E-value=2.9e-06  Score=83.62  Aligned_cols=166  Identities=14%  Similarity=0.170  Sum_probs=106.4

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -+.++++|++..-..++-    +++.+.++.+ .++++.|+.|-.|+-..+  ...++.+++. +.+-..+.+ +   -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~-KDVDGl~~~-n---~g  128 (296)
T PRK14188         54 GKQTKEAGMASFEHKLPADTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE-KDVDGLHVV-N---AG  128 (296)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc-cccccCChh-h---HH
Confidence            457899999976555543    3577777777 578899999999974221  1111111111 111111110 0   01


Q ss_pred             eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEc-cchhHHHHHHHHHHCCCeEEEE-eCCHHH
Q 012866          266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGARVVIF-DIDFER  338 (454)
Q Consensus       266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViG-aGG~arai~~~L~~~G~~v~i~-nRt~~~  338 (454)
                      ++. |.    ----.|+++.|+.             .+.+++||+|+|+| .|-+|+.++..|.+.|+.|+++ +||.+-
T Consensus       129 ~l~~~~~~~~PcTp~ai~~ll~~-------------~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~~l  195 (296)
T PRK14188        129 RLATGETALVPCTPLGCMMLLRR-------------VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTRDL  195 (296)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCCCH
Confidence            110 10    1125566666543             13678999999999 8899999999999999999999 587521


Q ss_pred             HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          339 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       339 a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                                        .+ ...++|+||.+++..       ..+...+++++.+|+|+-.+.
T Consensus       196 ------------------~e-~~~~ADIVIsavg~~-------~~v~~~~lk~GavVIDvGin~  233 (296)
T PRK14188        196 ------------------PA-VCRRADILVAAVGRP-------EMVKGDWIKPGATVIDVGINR  233 (296)
T ss_pred             ------------------HH-HHhcCCEEEEecCCh-------hhcchheecCCCEEEEcCCcc
Confidence                              11 234689999888642       136677899999999998775

>PRK14982 acyl-ACP reductase; Provisional

Probab=98.31  E-value=2.4e-06  Score=85.85  Aligned_cols=109  Identities=19%  Similarity=0.314  Sum_probs=79.9

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcC-CccccccccccCCCCccEEEECCCCC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMG-AARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~-~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ..+++++|+|+|| |.+|+.++..|.. .|+ +|+++||+.++++.++.++.. ...   ++.+ .+.++|+||.+|+..
T Consensus       151 ~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~---~l~~-~l~~aDiVv~~ts~~  226 (340)
T PRK14982        151 IDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKIL---SLEE-ALPEADIVVWVASMP  226 (340)
T ss_pred             cCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHH---hHHH-HHccCCEEEECCcCC
Confidence            4688999999998 7899999999985 477 999999999999999988752 222   3333 456799999999763


Q ss_pred             CCCCCCCCCCChhcccCCcEEEEEecCCCC-CHHHHHHHHCCCceec
Q 012866          375 MHPNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIVS  420 (454)
Q Consensus       375 ~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-T~ll~~A~~~G~~~~~  420 (454)
                      .     ...+.++.+.+..+++|+.+ |++ -|-.   .+-|..+++
T Consensus       227 ~-----~~~I~~~~l~~~~~viDiAv-PRDVd~~v---~~~~V~v~~  264 (340)
T PRK14982        227 K-----GVEIDPETLKKPCLMIDGGY-PKNLDTKV---QGPGIHVLK  264 (340)
T ss_pred             c-----CCcCCHHHhCCCeEEEEecC-CCCCCccc---CCCCEEEEe
Confidence            2     11256677788899999997 553 2211   225666644

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.31  E-value=3.1e-05  Score=75.83  Aligned_cols=203  Identities=14%  Similarity=0.263  Sum_probs=127.0

Q ss_pred             HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+.++++|++.....++-+    ++.+.++.+ .+.+..|+.|-+|....+  ...++.++|. +.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (284)
T PRK14190         54 KKAAEKVGIYSELYEFPADITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE-KDVDGFHPIN----VG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccCHhh----HH
Confidence            4678999999887777643    677777777 577899999999975321  1112111111 1111111100    01


Q ss_pred             eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++ .|    .----.|+++.|+.             .+.+++||+|+|+|.+ -.|+.++.-|...|+.|+++...... 
T Consensus       129 ~l~~~~~~~~PcTp~av~~lL~~-------------~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t~~-  194 (284)
T PRK14190        129 RMMLGQDTFLPCTPHGILELLKE-------------YNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKTKN-  194 (284)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCchh-
Confidence            11 11    01234455565543             2467999999999977 55999999999999999998643221 


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC-------CHHHHHHH
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK-------TRLLKDAE  412 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-------T~ll~~A~  412 (454)
                                      +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.+...       -.+ +.++
T Consensus       195 ----------------l~~-~~~~ADIvI~AvG~---p~----~i~~~~ik~gavVIDvGi~~~~~gkl~GDvd~-e~v~  249 (284)
T PRK14190        195 ----------------LAE-LTKQADILIVAVGK---PK----LITADMVKEGAVVIDVGVNRLENGKLCGDVDF-DNVK  249 (284)
T ss_pred             ----------------HHH-HHHhCCEEEEecCC---CC----cCCHHHcCCCCEEEEeeccccCCCCeeccCcH-HHHh
Confidence                            112 24568999998853   22    4888999999999999877521       233 3333


Q ss_pred             H-CCC--ceeccHH-----HHHHHHHHHHHHhcCC
Q 012866          413 A-AGA--IIVSGVE-----MFLRQAIGQFNLFTGK  439 (454)
Q Consensus       413 ~-~G~--~~~~Gl~-----mlv~Qa~~~f~lw~g~  439 (454)
                      + .++  ++-+|.+     ||+...+.+.+.|.|+
T Consensus       250 ~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  284 (284)
T PRK14190        250 EKASYITPVPGGVGPMTITMLMHNTVELAKRAGGR  284 (284)
T ss_pred             hhceEecCCCCCChHHHHHHHHHHHHHHHHHhhcC
Confidence            3 333  2334544     8888888888777653

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.30  E-value=1.1e-05  Score=78.99  Aligned_cols=183  Identities=19%  Similarity=0.290  Sum_probs=115.8

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCH
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHP  247 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  247 (454)
                      .-++| +|-+.+.- ..--+.++++|++.....++-+    ++...++.| .+.++.|+.|-+|+...+  ...++.++|
T Consensus        43 ii~vg~d~aS~~Yv-~~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p  121 (287)
T PRK14176         43 TILVGDDPASKMYV-RLKHKACERVGIRAEDQFLPADTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDP  121 (287)
T ss_pred             EEEECCCcchHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc
Confidence            44566 34333322 2334678999999887777642    577777777 578899999999975322  111211111


Q ss_pred             hHhHccceeEEEEeCCCCeEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866          248 LAQAIAAVNTIIRRPSDGKLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG  321 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~  321 (454)
                      . +.+-..+-.    +-|+++ |.    ----.|++..|+.             .+.+++||+|+|+|-|. .|+.++..
T Consensus       122 ~-KDVDGl~~~----N~g~l~~g~~~~~PcTp~av~~ll~~-------------~~i~l~Gk~vvViGrs~iVGkPla~l  183 (287)
T PRK14176        122 A-KDADGFHPY----NMGKLMIGDEGLVPCTPHGVIRALEE-------------YGVDIEGKNAVIVGHSNVVGKPMAAM  183 (287)
T ss_pred             c-ccccccChh----hhhhHhcCCCCCCCCcHHHHHHHHHH-------------cCCCCCCCEEEEECCCcccHHHHHHH
Confidence            1 111111100    001111 11    1234566666543             24678999999999997 79999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      |...|+.|+++.....                 ++.+ ...++|+||+|+..   |.    .+..++++++.+|+|+-.+
T Consensus       184 L~~~~atVtv~hs~T~-----------------~l~~-~~~~ADIvv~AvG~---p~----~i~~~~vk~gavVIDvGin  238 (287)
T PRK14176        184 LLNRNATVSVCHVFTD-----------------DLKK-YTLDADILVVATGV---KH----LIKADMVKEGAVIFDVGIT  238 (287)
T ss_pred             HHHCCCEEEEEeccCC-----------------CHHH-HHhhCCEEEEccCC---cc----ccCHHHcCCCcEEEEeccc
Confidence            9999999999985321                 2222 34678999998864   32    4788999999999999876


Q ss_pred             C
Q 012866          402 P  402 (454)
Q Consensus       402 P  402 (454)
                      .
T Consensus       239 ~  239 (287)
T PRK14176        239 K  239 (287)
T ss_pred             c
Confidence            4

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.25  E-value=3e-05  Score=75.70  Aligned_cols=202  Identities=17%  Similarity=0.223  Sum_probs=126.2

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .++++++|++.....++-    +++.+.++.+ .++++.|+.|-.|....+  ...++.++|. +.+-..+.. +   -|
T Consensus        52 ~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~-n---~g  126 (282)
T PRK14182         52 RKDCEEVGITSVEHHLPATTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDAISPA-KDADGFHPF-N---VG  126 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcCCCCHh-H---HH
Confidence            467899999988777754    2577777777 578899999999975321  1111111111 111111110 0   01


Q ss_pred             eEE-E-----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          266 KLI-G-----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       266 ~l~-G-----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      +++ |     .-.--.|+++.|+.             .+.+++||+++|+|-+ -.|+.++.-|.+.|+.|+++..... 
T Consensus       127 ~l~~g~~~~~~PcTp~avi~ll~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T~-  192 (282)
T PRK14182        127 ALSIGIAGVPRPCTPAGVMRMLDE-------------ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRTA-  192 (282)
T ss_pred             HHhCCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-
Confidence            111 1     11225667776654             2467899999999977 5599999999999999999875421 


Q ss_pred             HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-------CCHHHHHH
Q 012866          339 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-------KTRLLKDA  411 (454)
Q Consensus       339 a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-------~T~ll~~A  411 (454)
                                      ++.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.+..       +..|-...
T Consensus       193 ----------------nl~~-~~~~ADIvI~AvGk---~~----~i~~~~ik~gaiVIDvGin~~~~gkl~GDVd~~~v~  248 (282)
T PRK14182        193 ----------------DLAG-EVGRADILVAAIGK---AE----LVKGAWVKEGAVVIDVGMNRLADGKLVGDVEFAAAA  248 (282)
T ss_pred             ----------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEeeceecCCCCeeCCCCHHHHH
Confidence                            1222 34578999988853   32    588999999999999987752       12222222


Q ss_pred             HHCCCc--eeccHH-----HHHHHHHHHHHHhc
Q 012866          412 EAAGAI--IVSGVE-----MFLRQAIGQFNLFT  437 (454)
Q Consensus       412 ~~~G~~--~~~Gl~-----mlv~Qa~~~f~lw~  437 (454)
                      +..++.  +-+|.+     ||+.+.+.+.+.|.
T Consensus       249 ~~a~~iTPVPGGVGp~T~a~L~~N~~~~~~~~~  281 (282)
T PRK14182        249 ARASAITPVPGGVGPMTRAMLLVNTVELAKRTA  281 (282)
T ss_pred             hhccEecCCCCCChHHHHHHHHHHHHHHHHHhc
Confidence            333432  334544     88888877766653

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.24  E-value=4.9e-05  Score=74.29  Aligned_cols=167  Identities=15%  Similarity=0.227  Sum_probs=109.0

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -+.++++|++.....++.    +++.+.++.+ .+++..|+.|-+|+...+  ...++.++|. +.+-..+-.    +-|
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~----n~g  127 (282)
T PRK14180         53 EKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE-KDVDGFHPT----NVG  127 (282)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc-ccccccChh----hHH
Confidence            357899999988777765    3577777777 678899999999975322  1122222211 111111110    001


Q ss_pred             eE-EEe-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          266 KL-IGY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       266 ~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ++ .|.     -.--.|++.-|+.             .+.+++||+++|+|-+ -.|+.++.-|.+.|+.|+++.+... 
T Consensus       128 ~l~~g~~~~~~PcTp~aii~lL~~-------------y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T~-  193 (282)
T PRK14180        128 RLQLRDKKCLESCTPKGIMTMLRE-------------YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFTT-  193 (282)
T ss_pred             HHhcCCCCCcCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCCC-
Confidence            22 221     1234566666553             2467999999999987 5599999999999999999975421 


Q ss_pred             HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          339 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       339 a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                                      ++.+ ..+++|+||.|++.   |.    .+..++++++.+|+|+-.+.
T Consensus       194 ----------------dl~~-~~k~ADIvIsAvGk---p~----~i~~~~vk~gavVIDvGin~  233 (282)
T PRK14180        194 ----------------DLKS-HTTKADILIVAVGK---PN----FITADMVKEGAVVIDVGINH  233 (282)
T ss_pred             ----------------CHHH-HhhhcCEEEEccCC---cC----cCCHHHcCCCcEEEEecccc
Confidence                            2222 34678999988863   22    47889999999999998765

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=98.21  E-value=4.6e-06  Score=83.51  Aligned_cols=90  Identities=16%  Similarity=0.202  Sum_probs=61.1

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCcccccccc----ccCCCCccEEEECCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDIL----NFQPEKGAILANATPLG  374 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~----~~~~~~~divInat~~g  374 (454)
                      ++.++++||||+|.||+.++.+|.+.|+ +|+|+|||.++ .           +++++.    + ...++|+||.||+..
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~-~-----------~~~~~~~~~~~-~~~~~DvVIs~t~~T  237 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLT-L-----------PYRTVVREELS-FQDPYDVIFFGSSES  237 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccc-c-----------chhhhhhhhhh-cccCCCEEEEcCCcC
Confidence            4789999999999999999999999998 89999999753 1           122211    1 235789999986432


Q ss_pred             CCCCCCCCCCChhccc--CCcEEEEEecCCCCCH
Q 012866          375 MHPNTDRVPVSEETLR--DYQLVFDAVYTPRKTR  406 (454)
Q Consensus       375 ~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T~  406 (454)
                      ..|..   .+..+.+.  ...+++|+. .|++.+
T Consensus       238 as~~p---~i~~~~~~~~~~r~~iDLA-vPRdId  267 (338)
T PRK00676        238 AYAFP---HLSWESLADIPDRIVFDFN-VPRTFP  267 (338)
T ss_pred             CCCCc---eeeHHHHhhccCcEEEEec-CCCCCc
Confidence            22321   12223222  125899998 477653

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.21  E-value=6.4e-05  Score=73.60  Aligned_cols=167  Identities=15%  Similarity=0.220  Sum_probs=108.2

Q ss_pred             HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+.++++|++.....++-+    ++...++.+ .++.+.|+.|-+|+...+  ...++.++|. +.+-..+..-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  127 (285)
T PRK14191         53 IKACERVGMDSDLHTLQENTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN-KDVDGFHPLN----IG  127 (285)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccChhh----HH
Confidence            4678999999877777642    577777777 578899999999975211  1111111111 1111111100    01


Q ss_pred             eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++ .|.    ----.|+++.|+.             .+.+++||+|+|+|.| -.|+.++..|.+.|+.|+++.....  
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t~--  192 (285)
T PRK14191        128 KLCSQLDGFVPATPMGVMRLLKH-------------YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILTK--  192 (285)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHH-------------hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCcH--
Confidence            11 111    1234556665543             2467899999999998 7799999999999999999864321  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                       .+.              + ...++|+||.|++.   |    ..+..++++++.+|+|+-.++
T Consensus       193 -~l~--------------~-~~~~ADIvV~AvG~---p----~~i~~~~vk~GavVIDvGi~~  232 (285)
T PRK14191        193 -DLS--------------F-YTQNADIVCVGVGK---P----DLIKASMVKKGAVVVDIGINR  232 (285)
T ss_pred             -HHH--------------H-HHHhCCEEEEecCC---C----CcCCHHHcCCCcEEEEeeccc
Confidence             121              1 24568999998853   2    247889999999999998765

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.19  E-value=0.00014  Score=71.05  Aligned_cols=214  Identities=16%  Similarity=0.208  Sum_probs=129.0

Q ss_pred             EEEecC-CCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCH
Q 012866          176 FGLISK-PVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHP  247 (454)
Q Consensus       176 ~~liG~-pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~  247 (454)
                      .-++|+ |-+++ --..-.+.++++|++.....++-+    ++...++.+ .++++.|+.|-.|+...+  ...++.++|
T Consensus        35 ii~vg~d~as~~-Yv~~k~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p  113 (282)
T PRK14169         35 VVLVGSDPASEV-YVRNKQRRAEDIGVRSLMFRLPEATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDP  113 (282)
T ss_pred             EEEeCCChhHHH-HHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCc
Confidence            445553 33332 222335688999999887777653    577777777 578899999999975322  112222221


Q ss_pred             hHhHccceeEEEEeCCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHH
Q 012866          248 LAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFG  321 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~  321 (454)
                      . +.+-..+..-    -|+++ |    .-.--.|++..|+.             .+.+++||+++|||-+ -.|+.++.-
T Consensus       114 ~-KDVDGl~~~N----~g~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~l  175 (282)
T PRK14169        114 D-KDVDGFSPVS----VGRLWANEPTVVASTPYGIMALLDA-------------YDIDVAGKRVVIVGRSNIVGRPLAGL  175 (282)
T ss_pred             c-cCcccCChhh----hHHHhcCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHH
Confidence            1 1111111100    01111 1    11234566665543             2467999999999977 559999999


Q ss_pred             HHHCCCeEEEEe-CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEec
Q 012866          322 AKSRGARVVIFD-IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY  400 (454)
Q Consensus       322 L~~~G~~v~i~n-Rt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y  400 (454)
                      |...|+.|+++. ||.+                  +.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.
T Consensus       176 L~~~~atVtichs~T~~------------------l~~-~~~~ADIvI~AvG~---p~----~i~~~~vk~GavVIDvGi  229 (282)
T PRK14169        176 MVNHDATVTIAHSKTRN------------------LKQ-LTKEADILVVAVGV---PH----FIGADAVKPGAVVIDVGI  229 (282)
T ss_pred             HHHCCCEEEEECCCCCC------------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCcEEEEeec
Confidence            999999999995 4421                  212 24568999988864   22    478899999999999988


Q ss_pred             CCC-------CCHHHHHHHHCCC--ceeccH-----HHHHHHHHHHHH
Q 012866          401 TPR-------KTRLLKDAEAAGA--IIVSGV-----EMFLRQAIGQFN  434 (454)
Q Consensus       401 ~P~-------~T~ll~~A~~~G~--~~~~Gl-----~mlv~Qa~~~f~  434 (454)
                      ++.       +-.+-...+..++  ++-+|.     -||+...+.+.+
T Consensus       230 n~~~~gkl~GDVd~~~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~  277 (282)
T PRK14169        230 SRGADGKLLGDVDEAAVAPIASAITPVPGGVGPMTIASLMAQTVTLAK  277 (282)
T ss_pred             cccCCCCeeecCcHHHHHhhccEecCCCCCcHHHHHHHHHHHHHHHHH
Confidence            762       2223222233343  233464     477776665543

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.18  E-value=9.3e-05  Score=72.24  Aligned_cols=214  Identities=16%  Similarity=0.257  Sum_probs=129.3

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCH
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP  247 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~  247 (454)
                      .-++| +|-+++.-- .-.+..+++|++.....++-+    ++.+.++.| .++++.|+-|-.|.-..+-  ..++.++|
T Consensus        31 ii~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p  109 (279)
T PRK14178         31 TVIVGDDPASQMYVR-MKHRACERVGIGSVGIELPGDATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILP  109 (279)
T ss_pred             EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCc
Confidence            44555 344433222 224678999999887777653    677777777 6888999999999643221  11111111


Q ss_pred             hHhHccceeEEEEeCCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHH
Q 012866          248 LAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFG  321 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~  321 (454)
                      . +.+-..+.. +   -|+++ |    .----.|++..|+.             .+.+++|++|+|+|-+ -.||.++..
T Consensus       110 ~-KDVDGl~~~-n---~g~l~~~~~~~~PcTp~av~~ll~~-------------~~i~l~Gk~V~ViGrs~~vGrpla~l  171 (279)
T PRK14178        110 E-KDVDGFHPL-N---LGRLVSGLPGFAPCTPNGIMTLLHE-------------YKISIAGKRAVVVGRSIDVGRPMAAL  171 (279)
T ss_pred             c-cCcccCChh-h---HHHHhCCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCccccHHHHHH
Confidence            1 111111110 0   01111 1    01234566666543             2467999999999988 779999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      |...|+.|+++.++....+                 + ...++|+||+|++.   |    ..+..++++++.+|+|+..+
T Consensus       172 L~~~~atVtv~hs~t~~L~-----------------~-~~~~ADIvI~Avgk---~----~lv~~~~vk~GavVIDVgi~  226 (279)
T PRK14178        172 LLNADATVTICHSKTENLK-----------------A-ELRQADILVSAAGK---A----GFITPDMVKPGATVIDVGIN  226 (279)
T ss_pred             HHhCCCeeEEEecChhHHH-----------------H-HHhhCCEEEECCCc---c----cccCHHHcCCCcEEEEeecc
Confidence            9999999999987643221                 1 23568999999953   2    24788999999999999987


Q ss_pred             C------CCCHHHHHHHHC-CC--ceeccH-----HHHHHHHHHHHH
Q 012866          402 P------RKTRLLKDAEAA-GA--IIVSGV-----EMFLRQAIGQFN  434 (454)
Q Consensus       402 P------~~T~ll~~A~~~-G~--~~~~Gl-----~mlv~Qa~~~f~  434 (454)
                      .      .+..| ..+++. ++  ++-+|.     -||+...+.+.+
T Consensus       227 ~~~gkl~GDvdf-~~~~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~  272 (279)
T PRK14178        227 QVNGKLCGDVDF-DAVKEIAGAITPVPGGVGPMTIATLMENTFDAAK  272 (279)
T ss_pred             ccCCCCcCCccH-HHHHhhccCcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4      23443 333333 32  123443     367666665543

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=98.18  E-value=2.6e-06  Score=96.40  Aligned_cols=126  Identities=19%  Similarity=0.227  Sum_probs=93.9

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-e-------------EEEEeCCHHHHHHHHHHh-cCCcc--cc---ccccccCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-R-------------VVIFDIDFERAKSLASDV-MGAAR--PF---EDILNFQP  361 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~-------------v~i~nRt~~~a~~la~~~-~~~~~--~~---~~l~~~~~  361 (454)
                      +.|+|+|||||.+|+.++..|++..- +             |+|++++.++++++++.+ +..++  ++   +++.+ .+
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~-~v  646 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLK-YV  646 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHH-hh
Confidence            46799999999999999999987543 4             999999999999999987 43222  22   33333 33


Q ss_pred             CCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHH-------HHHHHHHHHH
Q 012866          362 EKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVE-------MFLRQAIGQF  433 (454)
Q Consensus       362 ~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~-------mlv~Qa~~~f  433 (454)
                      .++|+||+|+|..++.     ++...++..+.-++|..|... ...+.++|+++|..+++|..       |+..+.+.++
T Consensus       647 ~~~DaVIsalP~~~H~-----~VAkaAieaGkHvv~eky~~~e~~~L~e~Ak~AGV~~m~e~GlDPGid~~lA~~~Id~~  721 (1042)
T PLN02819        647 SQVDVVISLLPASCHA-----VVAKACIELKKHLVTASYVSEEMSALDSKAKEAGITILCEMGLDPGIDHMMAMKMIDDA  721 (1042)
T ss_pred             cCCCEEEECCCchhhH-----HHHHHHHHcCCCEEECcCCHHHHHHHHHHHHHcCCEEEECCccCHHHHHHHHHHHHHhh
Confidence            5699999999976542     355667778888899998744 45677899999988776554       6666666654

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.16  E-value=7.5e-05  Score=73.01  Aligned_cols=201  Identities=18%  Similarity=0.242  Sum_probs=122.8

Q ss_pred             HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+..+++|++.....++-+    ++.+.++.| .++.+.|+.|-.|.-..+  ...++.+++. +.+-..+-+-    -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~N----~g  127 (284)
T PRK14170         53 QKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD-KDVDGFHPVN----VG  127 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcccCChhh----hh
Confidence            4678999999877777642    566777777 578899999999964221  1111111111 1111111100    01


Q ss_pred             eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      +++ |.    ----.|++..|+.             .+.+++||+|+|+|-+. .|+.++.-|.+.|+.|+++.....  
T Consensus       128 ~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T~--  192 (284)
T PRK14170        128 NLFIGKDSFVPCTPAGIIELIKS-------------TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRTK--  192 (284)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC--
Confidence            111 10    1125566666553             24689999999999874 599999999999999999865321  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC-C------CHHHHHHH
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR-K------TRLLKDAE  412 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~-~------T~ll~~A~  412 (454)
                                     ++.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.+.. .      -.|-...+
T Consensus       193 ---------------~l~~-~~~~ADIvI~AvG~---~~----~i~~~~vk~GavVIDvGin~~~~gkl~GDvdfe~~~~  249 (284)
T PRK14170        193 ---------------DLPQ-VAKEADILVVATGL---AK----FVKKDYIKPGAIVIDVGMDRDENNKLCGDVDFDDVVE  249 (284)
T ss_pred             ---------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccCcccCCCCeecccchHHHHh
Confidence                           1222 34678999988864   22    478899999999999988752 1      22222222


Q ss_pred             HCCC--ceeccHH-----HHHHHHHHHHHHh
Q 012866          413 AAGA--IIVSGVE-----MFLRQAIGQFNLF  436 (454)
Q Consensus       413 ~~G~--~~~~Gl~-----mlv~Qa~~~f~lw  436 (454)
                      ..++  ++-+|.+     ||+...+.+.+.+
T Consensus       250 ~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~  280 (284)
T PRK14170        250 EAGFITPVPGGVGPMTITMLLANTLKAAKRI  280 (284)
T ss_pred             hccEecCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            2333  2334554     7777666665543

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.14  E-value=8.1e-05  Score=74.32  Aligned_cols=218  Identities=16%  Similarity=0.169  Sum_probs=131.0

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCH
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP  247 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~  247 (454)
                      +-++| +|-+++.- ..-.++.+++|++..-..++-+    ++.+.++.+ .++++.|+.|-.|....+-  ..++.+++
T Consensus        91 iIlvGddpaS~~Yv-~~k~K~a~~~GI~~~~~~l~~~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p  169 (345)
T PLN02897         91 VVLVGQQRDSQTYV-RNKIKACEETGIKSLLAELPEDCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRL  169 (345)
T ss_pred             EEEeCCChHHHHHH-HHHHHHHHhcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence            45566 34433211 1224678999999876666542    577777777 6788999999999752111  11111111


Q ss_pred             hHhHccceeEEEEeCCCCeE-EEe------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHH
Q 012866          248 LAQAIAAVNTIIRRPSDGKL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALA  319 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~  319 (454)
                      . +.+-..+-+    +-|++ .|.      ----.|+++.|+.             .+.+++||+|+|||-+ -.|+.++
T Consensus       170 ~-KDVDGl~p~----N~G~L~~~~~~~~~~PCTp~avi~LL~~-------------~~i~l~GK~vvVIGRS~iVGkPla  231 (345)
T PLN02897        170 E-KDVDGFHPL----NVGNLAMRGREPLFVSCTPKGCVELLIR-------------SGVEIAGKNAVVIGRSNIVGLPMS  231 (345)
T ss_pred             c-cCccCCCHH----HHHHHhcCCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccccHHHH
Confidence            0 111111100    00122 111      1224566666543             2467999999999977 5599999


Q ss_pred             HHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866          320 FGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       320 ~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      .-|.+.|+.|+++......                 +.+ ...++||||.|++.   |.    .+..++++++.+|+|+-
T Consensus       232 ~LL~~~~ATVTicHs~T~n-----------------l~~-~~~~ADIvIsAvGk---p~----~v~~d~vk~GavVIDVG  286 (345)
T PLN02897        232 LLLQRHDATVSTVHAFTKD-----------------PEQ-ITRKADIVIAAAGI---PN----LVRGSWLKPGAVVIDVG  286 (345)
T ss_pred             HHHHHCCCEEEEEcCCCCC-----------------HHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEcc
Confidence            9999999999998753211                 222 34678999988864   22    47889999999999998


Q ss_pred             cCCCCC-------------HHHHHHHHCCC--ceeccHH-----HHHHHHHHHHHHhc
Q 012866          400 YTPRKT-------------RLLKDAEAAGA--IIVSGVE-----MFLRQAIGQFNLFT  437 (454)
Q Consensus       400 y~P~~T-------------~ll~~A~~~G~--~~~~Gl~-----mlv~Qa~~~f~lw~  437 (454)
                      .++.+.             .+-...+..++  ++-+|.+     ||+...+.+.+.|.
T Consensus       287 in~~~~~~~~~g~klvGDVdfe~v~~~as~iTPVPGGVGpmTvamLm~N~~~a~~~~~  344 (345)
T PLN02897        287 TTPVEDSSCEFGYRLVGDVCYEEALGVASAITPVPGGVGPMTITMLLCNTLDAAKRIF  344 (345)
T ss_pred             ccccccccccCCCeeEecccHHHHHhhccccCCCCCchhHHHHHHHHHHHHHHHHHhc
Confidence            876321             23222233343  2345554     88888877777664

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.14  E-value=1.4e-06  Score=71.31  Aligned_cols=88  Identities=26%  Similarity=0.260  Sum_probs=62.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCC---CeEEEE-eCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRG---ARVVIF-DIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G---~~v~i~-nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ++.|||+|.+|.+++..|.+.|   .+|+++ +|+++++++++++++......+ ..+ ...++|+||.|++....++  
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~-~~~-~~~~advvilav~p~~~~~--   76 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADD-NEE-AAQEADVVILAVKPQQLPE--   76 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEE-HHH-HHHHTSEEEE-S-GGGHHH--
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCC-hHH-hhccCCEEEEEECHHHHHH--
Confidence            5789999999999999999999   689955 9999999999999875432211 112 2346899999998643322  


Q ss_pred             CCCCChh--cccCCcEEEEEe
Q 012866          381 RVPVSEE--TLRDYQLVFDAV  399 (454)
Q Consensus       381 ~~~i~~~--~l~~~~~v~D~~  399 (454)
                         +..+  .+.++++++|+.
T Consensus        77 ---v~~~i~~~~~~~~vis~~   94 (96)
T PF03807_consen   77 ---VLSEIPHLLKGKLVISIA   94 (96)
T ss_dssp             ---HHHHHHHHHTTSEEEEES
T ss_pred             ---HHHHHhhccCCCEEEEeC
Confidence               2222  355778888875

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.12  E-value=0.00013  Score=73.22  Aligned_cols=202  Identities=18%  Similarity=0.251  Sum_probs=123.3

Q ss_pred             HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .++.+++|++..-..++-+    ++.+.++.| .++++.|+.|-+|+...+  ...++.+++. +.+-..+-.    +-|
T Consensus       125 ~K~~e~~GI~~~~~~lpe~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~-KDVDGl~p~----N~G  199 (364)
T PLN02616        125 KKACDSVGINSFEVRLPEDSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE-KDVDGFHPL----NIG  199 (364)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChh----hhH
Confidence            4678999999765555542    566677777 578899999999975321  0111111111 111111100    001


Q ss_pred             eEE-E------eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          266 KLI-G------YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       266 ~l~-G------~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      ++. |      .----.|++..|+.             .+.+++||+|+|||-+ -.|+.++.-|.+.|+.|+++.....
T Consensus       200 ~L~~g~~~~~f~PCTp~avielL~~-------------y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T~  266 (364)
T PLN02616        200 RLAMRGREPLFVPCTPKGCIELLHR-------------YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRTK  266 (364)
T ss_pred             HHhcCCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCCC
Confidence            221 1      01224566666553             2467999999999977 5599999999999999999875421


Q ss_pred             HHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC-------------
Q 012866          338 RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK-------------  404 (454)
Q Consensus       338 ~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-------------  404 (454)
                                       ++.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.++.+             
T Consensus       267 -----------------nl~~-~~r~ADIVIsAvGk---p~----~i~~d~vK~GAvVIDVGIn~~~~~~~~~g~klvGD  321 (364)
T PLN02616        267 -----------------NPEE-ITREADIIISAVGQ---PN----MVRGSWIKPGAVVIDVGINPVEDASSPRGYRLVGD  321 (364)
T ss_pred             -----------------CHHH-HHhhCCEEEEcCCC---cC----cCCHHHcCCCCEEEeccccccccccccCCCeEEec
Confidence                             2222 34678999988853   22    4788999999999999776521             


Q ss_pred             CHHHHHHHHCCC--ceeccHH-----HHHHHHHHHHHHhc
Q 012866          405 TRLLKDAEAAGA--IIVSGVE-----MFLRQAIGQFNLFT  437 (454)
Q Consensus       405 T~ll~~A~~~G~--~~~~Gl~-----mlv~Qa~~~f~lw~  437 (454)
                      -.|-...+..++  ++-+|.+     ||+...+.+.+.+.
T Consensus       322 Vdfe~v~~~as~ITPVPGGVGpmTva~Ll~N~~~aa~~~~  361 (364)
T PLN02616        322 VCYEEACKVASAVTPVPGGVGPMTIAMLLSNTLTSAKRIH  361 (364)
T ss_pred             CcHHHHHhhccccCCCCCchHHHHHHHHHHHHHHHHHHhh
Confidence            123222223333  2445655     77777776665544

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=98.11  E-value=5.3e-05  Score=73.37  Aligned_cols=216  Identities=18%  Similarity=0.238  Sum_probs=136.9

Q ss_pred             EEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCch-----HHHHhhhhhc
Q 012866          176 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDEV  245 (454)
Q Consensus       176 ~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~~  245 (454)
                      .-++|+--+....=.+-.+..++.|+...+..++.    +++.+.++.+ .++++.|+-|-.|.=     +.++..++- 
T Consensus        35 vilvgddpaS~~YV~~K~k~~~~iGi~~~~~~l~~~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p-  113 (283)
T COG0190          35 VILVGDDPASQVYVRSKKKAAEEIGIASELYDLPEDITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDP-  113 (283)
T ss_pred             EEEeCCCHHHHHHHHHHHHHHHHcCCeeEEEeCCCcCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCc-
Confidence            44566544333334455788999999988888764    3677777766 688999999999953     233332210 


Q ss_pred             CHhHhHccceeEEEEeCCCCeEE-E---e-eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchh-HHHHH
Q 012866          246 HPLAQAIAAVNTIIRRPSDGKLI-G---Y-NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALA  319 (454)
Q Consensus       246 ~~~A~~igavNTi~~~~~~g~l~-G---~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~-arai~  319 (454)
                      +-.+.-....|.       |++. |   + -.--.|++..|++.             +.+++||+++|||.+.. ||.++
T Consensus       114 ~KDVDG~hp~N~-------g~L~~~~~~~~PCTp~gi~~ll~~~-------------~i~l~Gk~~vVVGrS~iVGkPla  173 (283)
T COG0190         114 EKDVDGFHPYNL-------GKLAQGEPGFLPCTPAGIMTLLEEY-------------GIDLRGKNVVVVGRSNIVGKPLA  173 (283)
T ss_pred             CCCccccChhHh-------cchhcCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCCcCcHHHH
Confidence            000000111111       3333 2   0 12357888877652             36789999999998854 99999


Q ss_pred             HHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866          320 FGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       320 ~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      ..|...++.|+++.....                 ++.+ ..+++|++|.|+..   |.    .+..++++++.+|+|+-
T Consensus       174 ~lL~~~naTVtvcHs~T~-----------------~l~~-~~k~ADIvv~AvG~---p~----~i~~d~vk~gavVIDVG  228 (283)
T COG0190         174 LLLLNANATVTVCHSRTK-----------------DLAS-ITKNADIVVVAVGK---PH----FIKADMVKPGAVVIDVG  228 (283)
T ss_pred             HHHHhCCCEEEEEcCCCC-----------------CHHH-HhhhCCEEEEecCC---cc----ccccccccCCCEEEecC
Confidence            999999999999986531                 1222 34678999988853   22    46778999999999996


Q ss_pred             cCCCC-------CHHHHHHHHCCCc-eec-cHH-----HHHHHHHHHHHHhc
Q 012866          400 YTPRK-------TRLLKDAEAAGAI-IVS-GVE-----MFLRQAIGQFNLFT  437 (454)
Q Consensus       400 y~P~~-------T~ll~~A~~~G~~-~~~-Gl~-----mlv~Qa~~~f~lw~  437 (454)
                      .+..+       ..|-...++.++. -++ |.+     ||+..-..+++...
T Consensus       229 inrv~~~kl~GDVdf~~v~~~a~~iTPVPGGVGPmTvamLl~Nt~~a~~~~~  280 (283)
T COG0190         229 INRVNDGKLVGDVDFDSVKEKASAITPVPGGVGPMTVAMLLENTLKAAERQR  280 (283)
T ss_pred             CccccCCceEeeccHHHHHHhhcccCCCCCccCHHHHHHHHHHHHHHHHHHh
Confidence            66432       3333333334432 344 554     78777777766543

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=98.11  E-value=0.00012  Score=72.15  Aligned_cols=202  Identities=16%  Similarity=0.207  Sum_probs=123.2

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+.++++|++..-..++-    +++.+.++.| .++++.|+.|-+|+-..+  ...++.+++. +.+-..+-.    +-|
T Consensus        61 ~k~a~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~-KDVDGl~~~----n~g  135 (299)
T PLN02516         61 RKACAEVGIKSFDVDLPENISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE-KDVDGFHPL----NIG  135 (299)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc-cccCccCHh----hHh
Confidence            457899999987666653    3577777777 678899999999964221  1111111111 111111100    012


Q ss_pred             eEE-E--e----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          266 KLI-G--Y----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       266 ~l~-G--~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      ++. |  .    =---.|++..|+.             .+.+++||+|+|||-+ -.||.++.-|.+.|+.|+++.....
T Consensus       136 ~l~~~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T~  202 (299)
T PLN02516        136 KLAMKGREPLFLPCTPKGCLELLSR-------------SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRTP  202 (299)
T ss_pred             hHhcCCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC
Confidence            222 1  0    1223455555543             2468999999999977 5599999999999999999975421


Q ss_pred             HHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCH-------HH--
Q 012866          338 RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR-------LL--  408 (454)
Q Consensus       338 ~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~-------ll--  408 (454)
                                       ++.+ ...++|+||.|++.   |    ..+..++++++.+|+|+-.+..+.+       +.  
T Consensus       203 -----------------nl~~-~~~~ADIvv~AvGk---~----~~i~~~~vk~gavVIDvGin~~~~~~~~~g~kl~GD  257 (299)
T PLN02516        203 -----------------DPES-IVREADIVIAAAGQ---A----MMIKGDWIKPGAAVIDVGTNAVSDPSKKSGYRLVGD  257 (299)
T ss_pred             -----------------CHHH-HHhhCCEEEEcCCC---c----CccCHHHcCCCCEEEEeeccccCcccccCCCceEcC
Confidence                             1222 34678999988753   3    2578899999999999987653111       10  


Q ss_pred             ---HHHHHC-CC--ceeccH-----HHHHHHHHHHHHHhc
Q 012866          409 ---KDAEAA-GA--IIVSGV-----EMFLRQAIGQFNLFT  437 (454)
Q Consensus       409 ---~~A~~~-G~--~~~~Gl-----~mlv~Qa~~~f~lw~  437 (454)
                         +.+++. ++  ++-+|.     -||+.+.+.+.+.|.
T Consensus       258 vd~e~v~~~a~~iTPVPGGVGp~T~a~L~~N~v~a~~~~~  297 (299)
T PLN02516        258 VDFAEVSKVAGWITPVPGGVGPMTVAMLLKNTVDGAKRVF  297 (299)
T ss_pred             cChHHhhhhceEecCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence               222222 22  233454     488888887777765

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=5.4e-05  Score=74.12  Aligned_cols=167  Identities=17%  Similarity=0.260  Sum_probs=107.5

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -+.++++|++.....++-    +++.+.++.| .++++.|+.|-+|+...+  ...++.++|. +.+-..+-. +   -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~-KDVDGl~~~-N---~g  128 (288)
T PRK14171         54 IKNAHKIGIDTLLVNLSTTIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS-KDIDGFHPL-N---VG  128 (288)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccccCCcc-c---hh
Confidence            467899999988777764    2566777766 578899999999975321  1111111111 111111110 0   12


Q ss_pred             eEE-Ee-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          266 KLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       266 ~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ++. |.     ----.|++..|+.             .+.+++||+++|+|-+ -.|+.++.-|.+.|+.|+++..... 
T Consensus       129 ~l~~g~~~~~~PcTp~av~~lL~~-------------y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T~-  194 (288)
T PRK14171        129 YLHSGISQGFIPCTALGCLAVIKK-------------YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKTH-  194 (288)
T ss_pred             hhhcCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC-
Confidence            221 11     1223455665543             2467999999999977 5599999999999999999884311 


Q ss_pred             HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          339 AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       339 a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                                      ++.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.+.
T Consensus       195 ----------------~L~~-~~~~ADIvV~AvGk---p~----~i~~~~vk~GavVIDvGin~  234 (288)
T PRK14171        195 ----------------NLSS-ITSKADIVVAAIGS---PL----KLTAEYFNPESIVIDVGINR  234 (288)
T ss_pred             ----------------CHHH-HHhhCCEEEEccCC---CC----ccCHHHcCCCCEEEEeeccc
Confidence                            1222 24578999988853   32    57889999999999998775

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=4.3e-05  Score=74.67  Aligned_cols=198  Identities=17%  Similarity=0.279  Sum_probs=122.2

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -+.++++|++.....++-    +++.+.++.| .++++.|+.|-+|+...+  ...++.+++. +.+-..+.. +   -|
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~-KDVDGl~~~-n---~g  129 (284)
T PRK14177         55 VKACHKVGMGSEMIRLKEQTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE-KDVDGVTTL-S---FG  129 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccccCChh-h---HH
Confidence            468899999988777754    2577777777 578899999999975322  1111111111 111111110 0   01


Q ss_pred             eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++ .|.    -.--.|+++.|+.             .+.+++||+|+|+|-+ -.|+.++.-|.+.|+.|+++.....  
T Consensus       130 ~l~~g~~~~~PcTp~avi~ll~~-------------y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T~--  194 (284)
T PRK14177        130 KLSMGVETYLPCTPYGMVLLLKE-------------YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKTQ--  194 (284)
T ss_pred             HHHcCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCC--
Confidence            11 111    1234566666553             2468999999999977 5599999999999999999884321  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC---CCHHHHHHHHCCC
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR---KTRLLKDAEAAGA  416 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~---~T~ll~~A~~~G~  416 (454)
                                     ++.+ ...++|+||.|++.   |.    .+..++++++++|+|+-.+..   +-.|-...+..++
T Consensus       195 ---------------~l~~-~~~~ADIvIsAvGk---~~----~i~~~~ik~gavVIDvGin~~~~GDVd~~~v~~~a~~  251 (284)
T PRK14177        195 ---------------NLPS-IVRQADIIVGAVGK---PE----FIKADWISEGAVLLDAGYNPGNVGDIEISKAKDKSSF  251 (284)
T ss_pred             ---------------CHHH-HHhhCCEEEEeCCC---cC----ccCHHHcCCCCEEEEecCcccccCCcCHHHHhhhccE
Confidence                           1222 24578999988753   22    478899999999999987643   2222222222332


Q ss_pred             --ceeccHH-----HHHHHHHHHH
Q 012866          417 --IIVSGVE-----MFLRQAIGQF  433 (454)
Q Consensus       417 --~~~~Gl~-----mlv~Qa~~~f  433 (454)
                        ++-+|.+     ||+.+.+..+
T Consensus       252 iTPVPGGVGp~T~a~L~~N~~~a~  275 (284)
T PRK14177        252 YTPVPGGVGPMTIAVLLLQTLYSF  275 (284)
T ss_pred             ecCCCCCChHHHHHHHHHHHHHHH
Confidence              2345555     7777776664

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=98.10  E-value=1e-06  Score=90.69  Aligned_cols=123  Identities=24%  Similarity=0.313  Sum_probs=84.2

Q ss_pred             EEEEccchhHHHHHHHHHHCC-C-eEEEEeCCHHHHHHHHHHhcC-C--c--cccc---cccccCCCCccEEEECCCCCC
Q 012866          306 FVLAGAGGAGRALAFGAKSRG-A-RVVIFDIDFERAKSLASDVMG-A--A--RPFE---DILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       306 vlViGaGG~arai~~~L~~~G-~-~v~i~nRt~~~a~~la~~~~~-~--~--~~~~---~l~~~~~~~~divInat~~g~  375 (454)
                      |+|+|+|.+|++++..|.+.+ . +|+|.+|+.++++++++.+.. .  .  ++..   ++.+ .+.++|+||||.+.-.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~-~~~~~dvVin~~gp~~   79 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAE-LLRGCDVVINCAGPFF   79 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHH-HHTTSSEEEE-SSGGG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHH-HHhcCCEEEECCccch
Confidence            689999999999999999886 4 899999999999999876422 1  1  2222   2444 3567899999997421


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEec-CCCCCHHHHHHHHCCCceeccHH-------HHHHHHHHHHH
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAVY-TPRKTRLLKDAEAAGAIIVSGVE-------MFLRQAIGQFN  434 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~y-~P~~T~ll~~A~~~G~~~~~Gl~-------mlv~Qa~~~f~  434 (454)
                           ..++-..++..+.-.+|..| .+....+-++|+++|..++.|.+       +++.+++.+|.
T Consensus        80 -----~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~~~~~~~~  141 (386)
T PF03435_consen   80 -----GEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLARYAADELD  141 (386)
T ss_dssp             -----HHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHHHHHHHHH
T ss_pred             -----hHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHHHHHHHhh
Confidence                 12344566777888999766 44455666888899988776543       88999999988

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.09  E-value=1.7e-06  Score=78.29  Aligned_cols=110  Identities=21%  Similarity=0.261  Sum_probs=69.1

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      +++.+||.|-||++++..|.+.|++|++|||++++++++.+. +...  .+...+ ...++|+|+.+.|.+-.  .....
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~-g~~~--~~s~~e-~~~~~dvvi~~v~~~~~--v~~v~   75 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEA-GAEV--ADSPAE-AAEQADVVILCVPDDDA--VEAVL   75 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHT-TEEE--ESSHHH-HHHHBSEEEE-SSSHHH--HHHHH
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHh-hhhh--hhhhhh-HhhcccceEeecccchh--hhhhh
Confidence            478999999999999999999999999999999999999876 2211  122222 23457999988874311  01111


Q ss_pred             CC---hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCcee
Q 012866          384 VS---EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       384 i~---~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~  419 (454)
                      ..   ...+.++.+++|+... |..+ .+.++++++|+.++
T Consensus        76 ~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~v  116 (163)
T PF03446_consen   76 FGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYV  116 (163)
T ss_dssp             HCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEE
T ss_pred             hhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceee
Confidence            11   2345678999999876 4433 33344456787544

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.09  E-value=9.6e-05  Score=72.76  Aligned_cols=202  Identities=19%  Similarity=0.277  Sum_probs=125.7

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+.++++|++.....++-    +++.+.++.+ .++++.|+.|-+|.-..+  -..++.+++. +.+-..+..-    -|
T Consensus        55 ~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  129 (297)
T PRK14168         55 IKTAHRLGFHEIQDNQSVDITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD-KDVDGFHPVN----VG  129 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-ccccccChhh----HH
Confidence            467899999987665543    3577777777 678899999999963211  1111111111 1111111110    01


Q ss_pred             eE-EEe------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHC----CCeEEEEe
Q 012866          266 KL-IGY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFD  333 (454)
Q Consensus       266 ~l-~G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~----G~~v~i~n  333 (454)
                      ++ .|.      -.--.|+++.|+.             .+.+++||+|+|||.+ -.|+.++.-|.+.    ++.|+++.
T Consensus       130 ~l~~~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~h  196 (297)
T PRK14168        130 RLMIGGDEVKFLPCTPAGIQEMLVR-------------SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVH  196 (297)
T ss_pred             HHhcCCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEec
Confidence            11 111      1225566666553             2468999999999977 5599999999988    67999986


Q ss_pred             CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC----------
Q 012866          334 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR----------  403 (454)
Q Consensus       334 Rt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~----------  403 (454)
                      +...                 ++.+ ...++|+||.|+..   |.    .+..++++++.+|+|+-.+..          
T Consensus       197 s~T~-----------------~l~~-~~~~ADIvVsAvGk---p~----~i~~~~ik~gavVIDvGin~~~~~~~~g~~~  251 (297)
T PRK14168        197 TRSK-----------------NLAR-HCQRADILIVAAGV---PN----LVKPEWIKPGATVIDVGVNRVGTNESTGKAI  251 (297)
T ss_pred             CCCc-----------------CHHH-HHhhCCEEEEecCC---cC----ccCHHHcCCCCEEEecCCCccCccccCCCcc
Confidence            4321                 1222 34678999998853   22    488899999999999976541          


Q ss_pred             ---CCHHHHHHHH-CCC--ceeccHH-----HHHHHHHHHHHHhcC
Q 012866          404 ---KTRLLKDAEA-AGA--IIVSGVE-----MFLRQAIGQFNLFTG  438 (454)
Q Consensus       404 ---~T~ll~~A~~-~G~--~~~~Gl~-----mlv~Qa~~~f~lw~g  438 (454)
                         +-.| +.+++ .++  ++-+|.+     ||++..+.+.+.|.|
T Consensus       252 ~~GDVdf-e~v~~~a~~iTPVPGGVGp~T~a~L~~N~~~a~~~~~~  296 (297)
T PRK14168        252 LSGDVDF-DAVKEIAGKITPVPGGVGPMTIAMLMRNTLKSAKFHLS  296 (297)
T ss_pred             eeccccH-HHHHhhccEecCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence               1122 23333 232  2334544     899999999999976

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=0.00023  Score=69.70  Aligned_cols=210  Identities=17%  Similarity=0.260  Sum_probs=128.0

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhhcCHhH
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLA  249 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  249 (454)
                      .-++| +|-+++.-- .--++++++|++.....++-    +++.+.++.+ .++...|+.|-+|+-..+       ++. 
T Consensus        36 ii~vg~d~as~~Yv~-~k~k~~~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~i-------d~~-  106 (286)
T PRK14184         36 VILVGEDPASQVYVR-NKERACEDAGIVSEAFRLPADTTQEELEDLIAELNARPDIDGILLQLPLPKGL-------DSQ-  106 (286)
T ss_pred             EEEeCCChhHHHHHH-HHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCcCceEEEecCCCCCC-------CHH-
Confidence            34555 444443222 22457899999988777764    3577777777 577899999999965321       111 


Q ss_pred             hHccceeEEEEeCCCC-------eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHH
Q 012866          250 QAIAAVNTIIRRPSDG-------KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGR  316 (454)
Q Consensus       250 ~~igavNTi~~~~~~g-------~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~ar  316 (454)
                      +.+.+++.-. + =||       +++ |.    -.--.|++..|+.             .+.+++||+++|+|-+ -.|+
T Consensus       107 ~i~~~I~p~K-D-VDGl~~~N~g~l~~~~~~~~PcTp~av~~lL~~-------------~~i~l~Gk~vvViGrS~iVG~  171 (286)
T PRK14184        107 RCLELIDPAK-D-VDGFHPENMGRLALGLPGFRPCTPAGVMTLLER-------------YGLSPAGKKAVVVGRSNIVGK  171 (286)
T ss_pred             HHHhccCccc-C-cccCCHhhHHHHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchH
Confidence            1111111110 0 011       111 10    1234566666554             2467899999999987 5599


Q ss_pred             HHHHHHHH----CCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCC
Q 012866          317 ALAFGAKS----RGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDY  392 (454)
Q Consensus       317 ai~~~L~~----~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~  392 (454)
                      .++.-|.+    .++.|+++..+...   +              .+ ...++|+||.|+..   |.    .+..++++++
T Consensus       172 Pla~lL~~~~~~~~AtVt~~hs~t~~---l--------------~~-~~~~ADIVI~AvG~---p~----li~~~~vk~G  226 (286)
T PRK14184        172 PLALMLGAPGKFANATVTVCHSRTPD---L--------------AE-ECREADFLFVAIGR---PR----FVTADMVKPG  226 (286)
T ss_pred             HHHHHHhCCcccCCCEEEEEeCCchh---H--------------HH-HHHhCCEEEEecCC---CC----cCCHHHcCCC
Confidence            99999998    78899998765322   1              11 24568999998843   32    4788999999


Q ss_pred             cEEEEEecCCC------CCHHHHHHHHCCCc--eeccHH-----HHHHHHHHHHH
Q 012866          393 QLVFDAVYTPR------KTRLLKDAEAAGAI--IVSGVE-----MFLRQAIGQFN  434 (454)
Q Consensus       393 ~~v~D~~y~P~------~T~ll~~A~~~G~~--~~~Gl~-----mlv~Qa~~~f~  434 (454)
                      .+|+|+..++.      +-.|-...+..++.  +-+|.+     ||+.+.+.+.+
T Consensus       227 avVIDVGi~~~~~~l~GDVdf~~v~~~a~~iTPVPGGVGp~Tva~Ll~N~~~a~~  281 (286)
T PRK14184        227 AVVVDVGINRTDDGLVGDCDFEGLSDVASAITPVPGGVGPMTIAQLLVNTVQSWK  281 (286)
T ss_pred             CEEEEeeeeccCCCccCCccHHHHHhhceEecCCCCCChHHHHHHHHHHHHHHHH
Confidence            99999987762      23332323333432  334544     77777766554

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=98.08  E-value=4.7e-06  Score=81.55  Aligned_cols=109  Identities=18%  Similarity=0.218  Sum_probs=76.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      +|.+||.|-||..++..|.+.|++++++||+++++.+++...|.....-  ..+ ....+|+||.+.+-+  +.+....+
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s--~~e-aa~~aDvVitmv~~~--~~V~~V~~   76 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAAS--PAE-AAAEADVVITMLPDD--AAVRAVLF   76 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCC--HHH-HHHhCCEEEEecCCH--HHHHHHHh
Confidence            6889999999999999999999999999999999888887777654221  112 345789999877643  12111122


Q ss_pred             Ch----hcccCCcEEEEEecC-CCC-CHHHHHHHHCCCce
Q 012866          385 SE----ETLRDYQLVFDAVYT-PRK-TRLLKDAEAAGAII  418 (454)
Q Consensus       385 ~~----~~l~~~~~v~D~~y~-P~~-T~ll~~A~~~G~~~  418 (454)
                      .+    +.++++.+++|++.. |.. ..+-+.++++|+..
T Consensus        77 g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~  116 (286)
T COG2084          77 GENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEF  116 (286)
T ss_pred             CccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcE
Confidence            21    235689999999876 443 34555666677654

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=5.6e-05  Score=73.73  Aligned_cols=167  Identities=18%  Similarity=0.225  Sum_probs=107.0

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .++++++|++.....++-    +++.+.++.| .+.+..|+.|-+|+...+-  ..++.+++. +.+-..+.. +   -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~I~p~-KDVDGl~~~-n---~g  128 (278)
T PRK14172         54 EKVANSLGIDFKKIKLDESISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNKIDAN-KDIDCLTFI-S---VG  128 (278)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc-cccCccCHh-h---HH
Confidence            468899999988877764    3566777777 5778999999999753211  111111111 111111110 0   01


Q ss_pred             eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++ .|.    ----.|+++.|+.             .+.+++||+|+|+|-+ -.|+.++.-|.+.|+.|+++.....  
T Consensus       129 ~l~~g~~~~~PcTp~av~~lL~~-------------~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T~--  193 (278)
T PRK14172        129 KFYKGEKCFLPCTPNSVITLIKS-------------LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKTK--  193 (278)
T ss_pred             HHhCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC--
Confidence            11 111    1234455665543             2467999999999977 5599999999999999999975321  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                                     ++.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       194 ---------------~l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gavVIDvGin~  233 (278)
T PRK14172        194 ---------------NLKE-VCKKADILVVAIGR---PK----FIDEEYVKEGAIVIDVGTSS  233 (278)
T ss_pred             ---------------CHHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCcEEEEeeccc
Confidence                           1222 24568999988863   22    48889999999999997665

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.06  E-value=5.8e-06  Score=75.87  Aligned_cols=119  Identities=22%  Similarity=0.290  Sum_probs=79.7

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ...+.|+++.|+|.|.+|++++..|+..|++|+.++|+....... ...+.   ...++++ .+.++|+|+++.|..  |
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~-~~~~~---~~~~l~e-ll~~aDiv~~~~plt--~  103 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGA-DEFGV---EYVSLDE-LLAQADIVSLHLPLT--P  103 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHH-HHTTE---EESSHHH-HHHH-SEEEE-SSSS--T
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhc-ccccc---eeeehhh-hcchhhhhhhhhccc--c
Confidence            467899999999999999999999999999999999998765422 22222   2334433 345689999999964  3


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHH
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                      .+ ...++.+.   ++++.+++.+.-.+. +..-+.+|-+.|...--++|.
T Consensus       104 ~T-~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV  153 (178)
T PF02826_consen  104 ET-RGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDV  153 (178)
T ss_dssp             TT-TTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS
T ss_pred             cc-ceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEEC
Confidence            32 23466654   567888988876654 455566677777655444443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=4.4e-05  Score=74.62  Aligned_cols=183  Identities=15%  Similarity=0.213  Sum_probs=114.9

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCH
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP  247 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~  247 (454)
                      .-++| +|-+++.--.. -+..+++|++.....++-    +++.+.++.| .++++.|+.|-+|....+-  ..+..+++
T Consensus        35 ii~vg~d~as~~Yv~~k-~k~a~~~Gi~~~~~~l~~~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p  113 (282)
T PRK14166         35 VILVGDNPASQTYVKSK-AKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIIS  113 (282)
T ss_pred             EEEeCCCHHHHHHHHHH-HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence            44555 44444322222 357899999988777764    3577777766 5788999999999753221  11111111


Q ss_pred             hHhHccceeEEEEeCCCCeE-EEe-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHH
Q 012866          248 LAQAIAAVNTIIRRPSDGKL-IGY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAF  320 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l-~G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~  320 (454)
                      . +.+-..+.+ +   -|++ .|.     ----.|++.-|+.             .+.+++||+|+|+|-+ -.|+.++.
T Consensus       114 ~-KDVDGl~~~-N---~g~l~~g~~~~~~PcTp~avi~lL~~-------------y~i~l~Gk~vvVvGrS~iVGkPla~  175 (282)
T PRK14166        114 S-KDVDGFHPI-N---VGYLNLGLESGFLPCTPLGVMKLLKA-------------YEIDLEGKDAVIIGASNIVGRPMAT  175 (282)
T ss_pred             c-cCcccCChh-h---hHHHhcCCCCCCcCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHH
Confidence            1 111111111 0   0122 121     1224566666553             2467899999999977 55999999


Q ss_pred             HHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEec
Q 012866          321 GAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY  400 (454)
Q Consensus       321 ~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y  400 (454)
                      -|.+.|+.|+++.+....                 +.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.
T Consensus       176 lL~~~~atVt~chs~T~n-----------------l~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~GavVIDvGi  230 (282)
T PRK14166        176 MLLNAGATVSVCHIKTKD-----------------LSL-YTRQADLIIVAAGC---VN----LLRSDMVKEGVIVVDVGI  230 (282)
T ss_pred             HHHHCCCEEEEeCCCCCC-----------------HHH-HHhhCCEEEEcCCC---cC----ccCHHHcCCCCEEEEecc
Confidence            999999999998864221                 222 24578999988863   22    478899999999999987


Q ss_pred             CC
Q 012866          401 TP  402 (454)
Q Consensus       401 ~P  402 (454)
                      ++
T Consensus       231 n~  232 (282)
T PRK14166        231 NR  232 (282)
T ss_pred             cc
Confidence            75

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=98.05  E-value=3.6e-05  Score=68.96  Aligned_cols=98  Identities=26%  Similarity=0.264  Sum_probs=63.9

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.||+++|+|.|..||.+|..|+.+|++|+|+.+++-++-+.+.+ |.+..+++   + .+..+|++|.||...   
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~d-Gf~v~~~~---~-a~~~adi~vtaTG~~---   89 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMD-GFEVMTLE---E-ALRDADIFVTATGNK---   89 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHT-T-EEE-HH---H-HTTT-SEEEE-SSSS---
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhc-CcEecCHH---H-HHhhCCEEEECCCCc---
Confidence            467899999999999999999999999999999999999876554321 22333333   3 356789999998531   


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCCCCHH
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPRKTRL  407 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~~T~l  407 (454)
                          ..+..+   .++++.++.++-..+.+..+
T Consensus        90 ----~vi~~e~~~~mkdgail~n~Gh~d~Eid~  118 (162)
T PF00670_consen   90 ----DVITGEHFRQMKDGAILANAGHFDVEIDV  118 (162)
T ss_dssp             ----SSB-HHHHHHS-TTEEEEESSSSTTSBTH
T ss_pred             ----cccCHHHHHHhcCCeEEeccCcCceeEee
Confidence                124433   46788999999888777654

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=6.9e-05  Score=73.76  Aligned_cols=200  Identities=16%  Similarity=0.220  Sum_probs=123.5

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -++++++|++..-..++.    +++.+.++.+ .+++..|+.|=.|+-..+  ...++.+++. +.+-..+..-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  128 (297)
T PRK14186         54 EKACARVGIASFGKHLPADTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD-KDADGLHPLN----LG  128 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cCcccCChhh----HH
Confidence            467899999987666653    3677777777 577899999999974222  1122222211 1111111110    01


Q ss_pred             eE-EE----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KL-IG----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l-~G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++ .|    .-.--.|++..|+.             .+.+++||+|+|||-+ -.|+.++.-|.+.|+.|+++.....  
T Consensus       129 ~l~~~~~~~~PcTp~aii~lL~~-------------~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T~--  193 (297)
T PRK14186        129 RLVKGEPGLRSCTPAGVMRLLRS-------------QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRTQ--  193 (297)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCCC--
Confidence            11 01    11235666666553             2467999999999977 5599999999999999999864321  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC-----------CHHH
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK-----------TRLL  408 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-----------T~ll  408 (454)
                                     ++.+ ...++||||.|++.   |.    .+..++++++.+|+|+-.+...           -.+-
T Consensus       194 ---------------~l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gavVIDvGin~~~~~~~~gkl~GDvd~~  250 (297)
T PRK14186        194 ---------------DLAS-ITREADILVAAAGR---PN----LIGAEMVKPGAVVVDVGIHRLPSSDGKTRLCGDVDFE  250 (297)
T ss_pred             ---------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEeccccccccccCCceeCCccHH
Confidence                           1222 24578999988863   32    4788999999999999877531           2221


Q ss_pred             HHHHHCCC--ceeccHH-----HHHHHHHHHHHH
Q 012866          409 KDAEAAGA--IIVSGVE-----MFLRQAIGQFNL  435 (454)
Q Consensus       409 ~~A~~~G~--~~~~Gl~-----mlv~Qa~~~f~l  435 (454)
                      ...+..++  ++-+|.+     ||+.+.+.+++.
T Consensus       251 ~v~~~a~~iTPVPGGVGp~T~a~L~~Nl~~a~~~  284 (297)
T PRK14186        251 EVEPVAAAITPVPGGVGPMTVTMLLVNTVLSWQK  284 (297)
T ss_pred             HHHhhceEecCCCCCchHHHHHHHHHHHHHHHHH
Confidence            22222333  2335544     888887777654

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.03  E-value=0.00012  Score=71.98  Aligned_cols=183  Identities=15%  Similarity=0.180  Sum_probs=113.2

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCH
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHP  247 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~  247 (454)
                      +-++| +|-+++.- ..-.+.++++|++.....++-    +++...++.| .++...|+.|-+|+...+-  ..++.++|
T Consensus        37 iI~vg~d~as~~Yv-~~k~k~a~~~Gi~~~~~~l~~~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p  115 (294)
T PRK14187         37 VILVGDDPASQLYV-RNKQRKAEMLGLRSETILLPSTISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDP  115 (294)
T ss_pred             EEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCc
Confidence            44556 34333322 123467899999988777764    2566667666 5778999999999752110  11111111


Q ss_pred             hHhHccceeEEEEeCCCCeEE-Ee------eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHH
Q 012866          248 LAQAIAAVNTIIRRPSDGKLI-GY------NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALA  319 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~-G~------NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~  319 (454)
                      . +.+-..+-.    +-|+++ |.      ----.|++..|+.             .+.+++||+++|+|-+ -.|+.++
T Consensus       116 ~-KDVDGl~~~----n~g~l~~g~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla  177 (294)
T PRK14187        116 E-KDVDGFHNE----NVGRLFTGQKKNCLIPCTPKGCLYLIKT-------------ITRNLSGSDAVVIGRSNIVGKPMA  177 (294)
T ss_pred             c-cCcccCChh----hHHHHhCCCCCCCccCcCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHH
Confidence            1 111111100    001211 21      1134566665543             2467999999999987 5599999


Q ss_pred             HHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866          320 FGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       320 ~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      .-|.+.|+.|+++.....                 ++.+ ...++||||.|++.   |.    .+..++++++.+|+|+-
T Consensus       178 ~lL~~~~aTVt~chs~T~-----------------~l~~-~~~~ADIvVsAvGk---p~----~i~~~~ik~gaiVIDVG  232 (294)
T PRK14187        178 CLLLGENCTVTTVHSATR-----------------DLAD-YCSKADILVAAVGI---PN----FVKYSWIKKGAIVIDVG  232 (294)
T ss_pred             HHHhhCCCEEEEeCCCCC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEec
Confidence            999999999999886421                 1222 34678999988863   22    47889999999999997


Q ss_pred             cCC
Q 012866          400 YTP  402 (454)
Q Consensus       400 y~P  402 (454)
                      .++
T Consensus       233 in~  235 (294)
T PRK14187        233 INS  235 (294)
T ss_pred             ccc
Confidence            664

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=8.5e-05  Score=72.51  Aligned_cols=167  Identities=17%  Similarity=0.273  Sum_probs=107.9

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .++++++|++..-..++-    +++.+.++.+ .+++..|+.|-.|....+  ...++.++|. +.+-..+-+ +   -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~-KDVDGl~~~-n---~g  127 (281)
T PRK14183         53 AKACDRVGIYSITHEMPSTISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK-KDVDGFHPY-N---VG  127 (281)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch-hcccccChh-h---hh
Confidence            467899999986666644    2577777777 578899999999975222  1112212211 111111110 0   01


Q ss_pred             eE-EEe----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KL-IGY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l-~G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++ .|.    ----.|++..|+.             .+.+++||+++|+|-| -.|+.++..|.+.|+.|+++.....  
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T~--  192 (281)
T PRK14183        128 RLVTGLDGFVPCTPLGVMELLEE-------------YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFTK--  192 (281)
T ss_pred             HHhcCCCCCCCCcHHHHHHHHHH-------------cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCCc--
Confidence            11 111    1124566666543             2468999999999988 6699999999999999998874321  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                                     ++.+ ...++|+||.|++.   |    ..+..++++++.+|+|+-.++
T Consensus       193 ---------------~l~~-~~~~ADIvV~AvGk---p----~~i~~~~vk~gavvIDvGin~  232 (281)
T PRK14183        193 ---------------DLKA-HTKKADIVIVGVGK---P----NLITEDMVKEGAIVIDIGINR  232 (281)
T ss_pred             ---------------CHHH-HHhhCCEEEEecCc---c----cccCHHHcCCCcEEEEeeccc
Confidence                           1222 34678999998853   2    247889999999999998765

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=0.00013  Score=71.76  Aligned_cols=167  Identities=14%  Similarity=0.231  Sum_probs=106.1

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+.++++|++.....++-    +++.+.++.+ .++.+.|+.|-.|....+  ...++.++|. +.+-..+-+ +   -|
T Consensus        53 ~k~a~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~-N---~g  127 (293)
T PRK14185         53 VKACEECGFKSSLIRYESDVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR-KDVDGFHPI-N---VG  127 (293)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc-cCcCCCCHh-h---HH
Confidence            468899999987766654    2566667666 678899999999975222  1111111111 111111100 0   01


Q ss_pred             eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHC----CCeEEEEeCC
Q 012866          266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFDID  335 (454)
Q Consensus       266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~----G~~v~i~nRt  335 (454)
                      +++ |.    ----.|+++.|+.             .+.+++||+|+|||-+ -.|+.++.-|.+.    ++.|+++...
T Consensus       128 ~l~~~~~~~~PcTp~av~~lL~~-------------~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~  194 (293)
T PRK14185        128 RMSIGLPCFVSATPNGILELLKR-------------YHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSR  194 (293)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCC
Confidence            221 11    1234566666553             2467999999999987 5599999999988    5789998643


Q ss_pred             HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          336 FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       336 ~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                      ..                 ++.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       195 T~-----------------nl~~-~~~~ADIvIsAvGk---p~----~i~~~~vk~gavVIDvGin~  236 (293)
T PRK14185        195 SK-----------------NLKK-ECLEADIIIAALGQ---PE----FVKADMVKEGAVVIDVGTTR  236 (293)
T ss_pred             CC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEecCcc
Confidence            21                 1222 23568999988863   22    47889999999999998775

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=7.6e-05  Score=73.06  Aligned_cols=168  Identities=18%  Similarity=0.274  Sum_probs=109.2

Q ss_pred             HHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHH--hhhhhcCHhHhHccceeEEEEeCCC
Q 012866          192 HNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVM--KFCDEVHPLAQAIAAVNTIIRRPSD  264 (454)
Q Consensus       192 hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~--~~~d~~~~~A~~igavNTi~~~~~~  264 (454)
                      -.++++++|++.....++-+    ++.+.++.| .++++.|+.|-.|.-..+-  ..++.++|. +.+-..+..-    -
T Consensus        47 k~k~~~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~-KDVDGl~p~n----~  121 (287)
T PRK14181         47 KVKKATDLGMVSKAHRLPSDATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD-KDVDGLHPVN----M  121 (287)
T ss_pred             HHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc-cCcccCChhh----H
Confidence            35688999999887777542    677777777 6788999999999653221  122222211 1111111110    0


Q ss_pred             CeEE-Ee-----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHC----CCeEEEEe
Q 012866          265 GKLI-GY-----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFD  333 (454)
Q Consensus       265 g~l~-G~-----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~----G~~v~i~n  333 (454)
                      |+++ |.     ----.|+++.|+.             .+.+++||+|+|||-+ -.||.++.-|.+.    ++.|+++.
T Consensus       122 g~l~~g~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvch  188 (287)
T PRK14181        122 GKLLLGETDGFIPCTPAGIIELLKY-------------YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLH  188 (287)
T ss_pred             HHHhcCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeC
Confidence            1221 21     1234566666553             2467999999999977 5599999999988    67999987


Q ss_pred             CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          334 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       334 Rt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                      ....                 ++.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       189 s~T~-----------------~l~~-~~~~ADIvV~AvG~---p~----~i~~~~ik~GavVIDvGin~  232 (287)
T PRK14181        189 SQSE-----------------NLTE-ILKTADIIIAAIGV---PL----FIKEEMIAEKAVIVDVGTSR  232 (287)
T ss_pred             CCCC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEecccc
Confidence            5321                 1222 24578999998863   22    48889999999999998775

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.97  E-value=8.9e-05  Score=72.66  Aligned_cols=167  Identities=18%  Similarity=0.303  Sum_probs=107.4

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -+.++++|++.....++-    +++.+.++.| .+.+..|+.|-+|.-..+  ...++.+++. +.+-..+.+-    -|
T Consensus        51 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~-KDVDGl~~~N----~g  125 (287)
T PRK14173         51 DRQAKALGLRSQVEVLPESTSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEAIDPL-KDVDGFHPLN----VG  125 (287)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-ccccccChhh----hH
Confidence            467899999988877764    3577777777 577899999999974311  1111111111 1111111110    01


Q ss_pred             eEE-Ee----eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          266 KLI-GY----NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       266 ~l~-G~----NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      +++ |.    -.--.|+++.|+.             .+.+++||+|+|+|.+ -.|+.++.-|.+.|+.|+++.+...  
T Consensus       126 ~l~~~~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T~--  190 (287)
T PRK14173        126 RLWMGGEALEPCTPAGVVRLLKH-------------YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKTQ--  190 (287)
T ss_pred             HHhcCCCCCCCCCHHHHHHHHHH-------------cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCCC--
Confidence            111 11    1234455565543             2467999999999977 5599999999999999999875422  


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                                     ++.+ ...++||||.|++.   |    ..+..++++++.+|+|+-.+.
T Consensus       191 ---------------~l~~-~~~~ADIvIsAvGk---p----~~i~~~~vk~GavVIDVGin~  230 (287)
T PRK14173        191 ---------------DLPA-VTRRADVLVVAVGR---P----HLITPEMVRPGAVVVDVGINR  230 (287)
T ss_pred             ---------------CHHH-HHhhCCEEEEecCC---c----CccCHHHcCCCCEEEEccCcc
Confidence                           1222 34578999988853   2    247889999999999997765

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=0.00019  Score=70.32  Aligned_cols=167  Identities=16%  Similarity=0.294  Sum_probs=107.5

Q ss_pred             HHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      -+..+++|++.....++-    +++.+.++.+ .++++.|+.|-+|+-..+  -..++.++|. +.+-..+-.-    -|
T Consensus        54 ~k~a~~~Gi~~~~~~l~~~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~-KDVDGl~~~n----~g  128 (284)
T PRK14193         54 HRDCAEVGITSIRRDLPADATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA-KDADGLHPTN----LG  128 (284)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-cCccCCChhh----hh
Confidence            467899999987777764    2566777766 577899999999974211  1111111111 1111111100    01


Q ss_pred             eEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHH--CCCeEEEEeCCHH
Q 012866          266 KLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKS--RGARVVIFDIDFE  337 (454)
Q Consensus       266 ~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~--~G~~v~i~nRt~~  337 (454)
                      +++ |    .-.--.|++..|+.             .+.+++||+++|||.+ -.|+.++.-|.+  .++.|+++.....
T Consensus       129 ~l~~~~~~~~PcTp~av~~ll~~-------------~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T~  195 (284)
T PRK14193        129 RLVLNEPAPLPCTPRGIVHLLRR-------------YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGTR  195 (284)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCCC
Confidence            111 1    12334566666543             2467899999999987 559999999988  6889999876421


Q ss_pred             HHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          338 RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       338 ~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                                       ++.+ ...++|+||.|++.   |.    .+..++++++.+|+|+-.++
T Consensus       196 -----------------~l~~-~~k~ADIvV~AvGk---p~----~i~~~~ik~GavVIDvGin~  235 (284)
T PRK14193        196 -----------------DLAA-HTRRADIIVAAAGV---AH----LVTADMVKPGAAVLDVGVSR  235 (284)
T ss_pred             -----------------CHHH-HHHhCCEEEEecCC---cC----ccCHHHcCCCCEEEEccccc
Confidence                             1222 34678999988864   22    48889999999999998876

>PLN02928 oxidoreductase family protein

Probab=97.95  E-value=2e-05  Score=80.00  Aligned_cols=75  Identities=19%  Similarity=0.263  Sum_probs=52.6

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH--------HHhcCCccccccccccCCCCccEEEEC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA--------SDVMGAARPFEDILNFQPEKGAILANA  370 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la--------~~~~~~~~~~~~l~~~~~~~~divIna  370 (454)
                      ..+.||++.|+|.|.+|++++..|+.+|++|+.++|+..+.....        ..+........++.+ .+.++|+|+++
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~e-ll~~aDiVvl~  233 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYE-FAGEADIVVLC  233 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHH-HHhhCCEEEEC
Confidence            357899999999999999999999999999999999843322110        000001112334544 45678999999


Q ss_pred             CCCC
Q 012866          371 TPLG  374 (454)
Q Consensus       371 t~~g  374 (454)
                      +|..
T Consensus       234 lPlt  237 (347)
T PLN02928        234 CTLT  237 (347)
T ss_pred             CCCC
Confidence            9864

>PRK06046 alanine dehydrogenase; Validated

Probab=97.94  E-value=3.4e-05  Score=77.71  Aligned_cols=93  Identities=19%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      -+++.|+|+|+.|+..+.++.. .++ +|.|++|+.++++++++++...    ....+++++ .+. +|+|++|||.. .
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~-aDiVv~aTps~-~  205 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEE-ACD-CDILVTTTPSR-K  205 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHH-Hhh-CCEEEEecCCC-C
Confidence            4789999999999999999884 467 8999999999999999887421    112334444 344 89999999863 2


Q ss_pred             CCCCCCCCChhcccCCcEEEEE-ecCCC
Q 012866          377 PNTDRVPVSEETLRDYQLVFDA-VYTPR  403 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~-~y~P~  403 (454)
                      |     .+..+|++++..|.-+ .|.|.
T Consensus       206 P-----~~~~~~l~~g~hV~~iGs~~p~  228 (326)
T PRK06046        206 P-----VVKAEWIKEGTHINAIGADAPG  228 (326)
T ss_pred             c-----EecHHHcCCCCEEEecCCCCCc
Confidence            2     2667788888776655 34554

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.94  E-value=0.0001  Score=72.60  Aligned_cols=204  Identities=20%  Similarity=0.260  Sum_probs=125.3

Q ss_pred             HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .++++++|++.....++-+    ++.+.++.+ .+++..|+.|-+|....+  ...++.++|. +.+-..+..-    -|
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~-KDVDGl~~~n----~g  127 (297)
T PRK14167         53 QRDCEEVGIEAIDVEIDPDAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA-KDVDGFHPEN----VG  127 (297)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc-cCcccCChhh----hH
Confidence            4688999999887777642    577777777 678899999999975322  1122222211 1111111110    01


Q ss_pred             eE-EEee----ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHC----CCeEEEEeCC
Q 012866          266 KL-IGYN----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSR----GARVVIFDID  335 (454)
Q Consensus       266 ~l-~G~N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~----G~~v~i~nRt  335 (454)
                      ++ .|.+    ---.|+++.|+.             .+.+++||+|+|||-+ -.||.++.-|.+.    ++.|+++...
T Consensus       128 ~l~~g~~~~~PcTp~avi~lL~~-------------~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~  194 (297)
T PRK14167        128 RLVAGDARFKPCTPHGIQKLLAA-------------AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSR  194 (297)
T ss_pred             HHhCCCCCCCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCC
Confidence            12 1111    234566666553             2467999999999977 5599999999887    6799998543


Q ss_pred             HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC--C----HH--
Q 012866          336 FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK--T----RL--  407 (454)
Q Consensus       336 ~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~--T----~l--  407 (454)
                      ..                 ++.+ ...++||||.|+..   |.    .+..++++++.+|+|+-.++.+  |    .+  
T Consensus       195 T~-----------------~l~~-~~~~ADIvIsAvGk---p~----~i~~~~ik~gaiVIDvGin~~~~~~~~g~kl~G  249 (297)
T PRK14167        195 TD-----------------DLAA-KTRRADIVVAAAGV---PE----LIDGSMLSEGATVIDVGINRVDADTEKGYELVG  249 (297)
T ss_pred             CC-----------------CHHH-HHhhCCEEEEccCC---cC----ccCHHHcCCCCEEEEccccccCcccccCCceee
Confidence            21                 1222 34678999988753   22    5788999999999999877521  1    11  


Q ss_pred             ---HHHHHH-CCC--ceeccHH-----HHHHHHHHHHHHhcCC
Q 012866          408 ---LKDAEA-AGA--IIVSGVE-----MFLRQAIGQFNLFTGK  439 (454)
Q Consensus       408 ---l~~A~~-~G~--~~~~Gl~-----mlv~Qa~~~f~lw~g~  439 (454)
                         .+.+++ .++  ++-+|.+     ||+.+.+.+++.-.+.
T Consensus       250 DVd~e~v~~~a~~iTPVPGGVGpvT~a~L~~N~~~a~~~~~~~  292 (297)
T PRK14167        250 DVEFESAKEKASAITPVPGGVGPMTRAMLLYNTVKAASLQEGV  292 (297)
T ss_pred             cCcHHHHHhhceEecCCCCCchHHHHHHHHHHHHHHHHHhcCC
Confidence               022222 232  2344544     8888888777654443

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.90  E-value=0.00027  Score=69.68  Aligned_cols=167  Identities=15%  Similarity=0.214  Sum_probs=107.1

Q ss_pred             HHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchHHHHh--hhhhcCHhHhHccceeEEEEeCCCC
Q 012866          193 NPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKEAVMK--FCDEVHPLAQAIAAVNTIIRRPSDG  265 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~--~~d~~~~~A~~igavNTi~~~~~~g  265 (454)
                      .+.++++|++.....++-+    ++.+.++.+ .++++.|+.|-.|....+-.  .++.++|. +.+-..+..    +-|
T Consensus        53 ~k~~~~~Gi~~~~~~l~~~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~-KDVDGl~~~----n~g  127 (295)
T PRK14174         53 AKSCKEIGMNSTVIELPADTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA-KDVDGFHPE----NLG  127 (295)
T ss_pred             HHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc-ccccccChh----hHH
Confidence            4678999999888777653    677777777 57889999999997521110  11111111 111111110    012


Q ss_pred             eEE-Ee--e----ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHH----CCCeEEEEe
Q 012866          266 KLI-GY--N----TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKS----RGARVVIFD  333 (454)
Q Consensus       266 ~l~-G~--N----TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~----~G~~v~i~n  333 (454)
                      +++ |.  +    ---.|++..|+.             .+.+++||+|+|||.+ -.||.++.-|.+    .|+.|+++.
T Consensus       128 ~l~~~~~~~~~~PcTp~ail~ll~~-------------y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~h  194 (295)
T PRK14174        128 RLVMGHLDKCFVSCTPYGILELLGR-------------YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICH  194 (295)
T ss_pred             HHhcCCCCCCcCCCCHHHHHHHHHH-------------hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEe
Confidence            221 21  1    234455555543             2467899999999987 459999999887    578999988


Q ss_pred             CCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          334 IDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       334 Rt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                      .+....+                 + ...++|+||.|++.   |    ..+..++++++.+|+|+..+.
T Consensus       195 s~t~~l~-----------------~-~~~~ADIvI~Avg~---~----~li~~~~vk~GavVIDVgi~~  238 (295)
T PRK14174        195 SATKDIP-----------------S-YTRQADILIAAIGK---A----RFITADMVKPGAVVIDVGINR  238 (295)
T ss_pred             CCchhHH-----------------H-HHHhCCEEEEecCc---c----CccCHHHcCCCCEEEEeeccc
Confidence            6643322                 1 23568999998842   2    248889999999999998765

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.87  E-value=0.00014  Score=63.98  Aligned_cols=80  Identities=19%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             CCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC
Q 012866          298 GSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       298 ~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      +.+++||+++|+|.+ -.|+.++..|.+.|+.|++++++....                 ++ ..+++|+||.+|+.-  
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l-----------------~~-~v~~ADIVvsAtg~~--   82 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQL-----------------QS-KVHDADVVVVGSPKP--   82 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCH-----------------HH-HHhhCCEEEEecCCC--
Confidence            468999999999976 669999999999999999998653221                 12 346789999999742  


Q ss_pred             CCCCCCCCChhcccCCcEEEEEecCC
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                      +     .+..+|++++.+|+|+-.+.
T Consensus        83 ~-----~i~~~~ikpGa~Vidvg~~~  103 (140)
T cd05212          83 E-----KVPTEWIKPGATVINCSPTK  103 (140)
T ss_pred             C-----ccCHHHcCCCCEEEEcCCCc
Confidence            1     47889999999999987654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.84  E-value=4.1e-05  Score=77.33  Aligned_cols=70  Identities=17%  Similarity=0.244  Sum_probs=52.6

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ..+.||++.|||.|.+|+.++..|...|++|.+++|+.....  ...++...   .++.+ .+.++|+|+.++|..
T Consensus       146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--~~~~~~~~---~~l~e-ll~~aDiV~l~lP~t  215 (333)
T PRK13243        146 YDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEA--EKELGAEY---RPLEE-LLRESDFVSLHVPLT  215 (333)
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhh--HHHcCCEe---cCHHH-HHhhCCEEEEeCCCC
Confidence            457899999999999999999999999999999999865432  23333222   23333 346789999988863

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.83  E-value=2.6e-05  Score=77.56  Aligned_cols=110  Identities=17%  Similarity=0.222  Sum_probs=73.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      ++.|||.|-+|.+++..|.+.|.+|+++||++++++++.+.-.....+.+++.+ .+..+|+|+-++|.+...   . .+
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~-~~~~~dvIi~~vp~~~~~---~-v~   76 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQ-RLSAPRVVWVMVPHGIVD---A-VL   76 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHh-hcCCCCEEEEEcCchHHH---H-HH
Confidence            588999999999999999999999999999999999887642111223333332 345689999999865211   1 11


Q ss_pred             C--hhcccCCcEEEEEecC-CCCCHH-HHHHHHCCCcee
Q 012866          385 S--EETLRDYQLVFDAVYT-PRKTRL-LKDAEAAGAIIV  419 (454)
Q Consensus       385 ~--~~~l~~~~~v~D~~y~-P~~T~l-l~~A~~~G~~~~  419 (454)
                      .  ...++++.+++|..-. |..|.- .++++++|..++
T Consensus        77 ~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~v  115 (298)
T TIGR00872        77 EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLL  115 (298)
T ss_pred             HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEE
Confidence            1  1235678899998654 444432 335556676543

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.80  E-value=4.8e-05  Score=76.17  Aligned_cols=96  Identities=21%  Similarity=0.198  Sum_probs=60.5

Q ss_pred             CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      .+++.|+|+|.-|+.-+.++.. ++. +|.|++|++++++++++++...   ....++.++ .+.++|+||.||+.... 
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~-av~~aDii~taT~s~~~-  205 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEE-AVRGADIIVTATPSTTP-  205 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHH-HHTTSSEEEE----SSE-
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhh-hcccCCEEEEccCCCCC-
Confidence            3689999999999999998875 567 9999999999999999988661   222334444 56789999999987531 


Q ss_pred             CCCCCCCChhcccCCcEEEEEe-cCCC
Q 012866          378 NTDRVPVSEETLRDYQLVFDAV-YTPR  403 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~-y~P~  403 (454)
                         ...+..+|++++..+.-+- |.|.
T Consensus       206 ---~P~~~~~~l~~g~hi~~iGs~~~~  229 (313)
T PF02423_consen  206 ---APVFDAEWLKPGTHINAIGSYTPG  229 (313)
T ss_dssp             ---EESB-GGGS-TT-EEEE-S-SSTT
T ss_pred             ---CccccHHHcCCCcEEEEecCCCCc
Confidence               0136778999988777664 3464

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.79  E-value=7.9e-05  Score=74.60  Aligned_cols=94  Identities=11%  Similarity=0.099  Sum_probs=69.0

Q ss_pred             CceEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~-G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      -+++.|+|+|..|+.-+.++... .. +|.|+||++++++++++.+...   ....++.++ ...++|||+.||+... |
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIV~taT~s~~-P  205 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAE-VAHAANLIVTTTPSRE-P  205 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHH-HhcCCCEEEEecCCCC-c
Confidence            47899999999999999988754 45 8999999999999998776422   212234444 5678999999998532 2


Q ss_pred             CCCCCCCChhcccCCcEEEEE-ecCCC
Q 012866          378 NTDRVPVSEETLRDYQLVFDA-VYTPR  403 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~-~y~P~  403 (454)
                           .+..+|++++..+.=+ .|.|.
T Consensus       206 -----~~~~~~l~~G~hi~~iGs~~p~  227 (315)
T PRK06823        206 -----LLQAEDIQPGTHITAVGADSPG  227 (315)
T ss_pred             -----eeCHHHcCCCcEEEecCCCCcc
Confidence                 2567888888766555 34453

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.78  E-value=9.8e-05  Score=74.34  Aligned_cols=94  Identities=16%  Similarity=0.125  Sum_probs=68.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcC---CccccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMG---AARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~-G~-~v~i~nRt~~~a~~la~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      .+++.|||+|..|++-+.++... .. +|+|++|+.++++++++++..   .....++.++ ...++|+||.|||.. .|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~e-av~~aDiVitaT~s~-~P  205 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPRE-AVEGCDILVTTTPSR-KP  205 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHH-HhccCCEEEEecCCC-Cc
Confidence            47899999999999988877653 44 899999999999999886642   1222334444 457899999999853 22


Q ss_pred             CCCCCCCChhcccCCcEEEEEe-cCCC
Q 012866          378 NTDRVPVSEETLRDYQLVFDAV-YTPR  403 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~-y~P~  403 (454)
                           .+..++++++..+.-+- |.|.
T Consensus       206 -----~~~~~~l~~g~~v~~vGs~~p~  227 (325)
T TIGR02371       206 -----VVKADWVSEGTHINAIGADAPG  227 (325)
T ss_pred             -----EecHHHcCCCCEEEecCCCCcc
Confidence                 25678888888766663 4453

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.76  E-value=7.1e-05  Score=74.47  Aligned_cols=94  Identities=19%  Similarity=0.248  Sum_probs=68.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~-G~-~v~i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      -+++.|+|+|.-|+.-+.++... .. +|.||||+.++++++++++...    ....++.++ ...++|||+.||+.. .
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~e-av~~aDIV~taT~s~-~  194 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEA-ALRDADTITSITNSD-T  194 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCC-C
Confidence            47899999999999998888764 56 8999999999999999887532    222334444 467899999999853 2


Q ss_pred             CCCCCCCCChhcccCCcEEEEE-ecCCC
Q 012866          377 PNTDRVPVSEETLRDYQLVFDA-VYTPR  403 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~-~y~P~  403 (454)
                      |     .+..+|++++..|.-+ .|.|.
T Consensus       195 P-----~~~~~~l~pg~hV~aiGs~~p~  217 (301)
T PRK06407        195 P-----IFNRKYLGDEYHVNLAGSNYPN  217 (301)
T ss_pred             c-----EecHHHcCCCceEEecCCCCCC
Confidence            2     2567788886544333 34453

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=97.75  E-value=0.00013  Score=65.68  Aligned_cols=81  Identities=22%  Similarity=0.324  Sum_probs=55.1

Q ss_pred             CCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      +.+++||+|+|+|.+. .|+.++..|.+.|+.|+++.......+                 + ...++|+||.|++.   
T Consensus        31 ~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T~~l~-----------------~-~~~~ADIVVsa~G~---   89 (160)
T PF02882_consen   31 GIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKTKNLQ-----------------E-ITRRADIVVSAVGK---   89 (160)
T ss_dssp             T-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTSSSHH-----------------H-HHTTSSEEEE-SSS---
T ss_pred             CCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCCCccc-----------------c-eeeeccEEeeeecc---
Confidence            4679999999999885 799999999999999999887642222                 2 23568999988853   


Q ss_pred             CCCCCCCCChhcccCCcEEEEEecCCC
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAVYTPR  403 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~y~P~  403 (454)
                      |+    .+..++++++.+|+|+-.++.
T Consensus        90 ~~----~i~~~~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   90 PN----LIKADWIKPGAVVIDVGINYV  112 (160)
T ss_dssp             TT-----B-GGGS-TTEEEEE--CEEE
T ss_pred             cc----ccccccccCCcEEEecCCccc
Confidence            32    478899999999999977654

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.71  E-value=8.1e-05  Score=76.35  Aligned_cols=115  Identities=17%  Similarity=0.160  Sum_probs=77.0

Q ss_pred             CeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-C-CC-eEEEEeCCHHHHHH
Q 012866          265 GKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-R-GA-RVVIFDIDFERAKS  341 (454)
Q Consensus       265 g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~-G~-~v~i~nRt~~~a~~  341 (454)
                      +.+.+.-|=..+.+.+ + .|.             .-.-+++.|+|+|..|+.-+.++.. . .. +|.|+||+++++++
T Consensus       132 ~~lTa~RTaA~salaa-~-~LA-------------r~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~  196 (379)
T PRK06199        132 NLLSAYRTGAVPGVGA-R-HLA-------------RKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDS  196 (379)
T ss_pred             cchhhhHHHHHHHHHH-H-Hhc-------------cCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHH
Confidence            4566666766665543 1 132             1134789999999999999999887 4 37 89999999999999


Q ss_pred             HHHHhcCC------ccccccccccCCCCccEEEECCCCCCC-CCCCCCCCChhcccCCcEEE
Q 012866          342 LASDVMGA------ARPFEDILNFQPEKGAILANATPLGMH-PNTDRVPVSEETLRDYQLVF  396 (454)
Q Consensus       342 la~~~~~~------~~~~~~l~~~~~~~~divInat~~g~~-p~~~~~~i~~~~l~~~~~v~  396 (454)
                      +++++...      ....++.++ .+.++||||.||+.... |.. ...+..+|++++..+.
T Consensus       197 f~~~~~~~~~~~~~v~~~~s~~e-av~~ADIVvtaT~s~~~~~s~-~Pv~~~~~lkpG~hv~  256 (379)
T PRK06199        197 FATWVAETYPQITNVEVVDSIEE-VVRGSDIVTYCNSGETGDPST-YPYVKREWVKPGAFLL  256 (379)
T ss_pred             HHHHHHHhcCCCceEEEeCCHHH-HHcCCCEEEEccCCCCCCCCc-CcEecHHHcCCCcEEe
Confidence            99887532      112234444 46789999999975331 111 1125667887776543

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.71  E-value=0.00022  Score=75.48  Aligned_cols=96  Identities=23%  Similarity=0.246  Sum_probs=62.2

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .+.+++++|+|.||+|++++..|.+.|++|++++|+.....++.++++.....-.+-.+ .+.++|+||-  |.|.    
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~-~~~~~d~vV~--Spgi----   84 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASD-QLDSFSLVVT--SPGW----   84 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchh-HhcCCCEEEe--CCCC----
Confidence            46788999999999999999999999999999999876655444443332211000001 1223455442  1111    


Q ss_pred             CCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHH
Q 012866          380 DRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                                            |..-|.+++|+++|++++.-.++
T Consensus        85 ----------------------~~~~p~~~~a~~~gi~v~~~~el  107 (473)
T PRK00141         85 ----------------------RPDSPLLVDAQSQGLEVIGDVEL  107 (473)
T ss_pred             ----------------------CCCCHHHHHHHHCCCceeeHHHH
Confidence                                  22446778888888888777774

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=97.70  E-value=9.6e-05  Score=73.76  Aligned_cols=72  Identities=26%  Similarity=0.364  Sum_probs=55.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc--------cccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~~~~~~divInat~~  373 (454)
                      +++.|||+|++|+++++.|+..|.  +|++++|+.++++.++.++....        +...+.+  .+.++|+||+|++.
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~--~l~~aDIVIitag~   78 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYS--DCKDADIVVITAGA   78 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHH--HhCCCCEEEEccCC
Confidence            378999999999999999999995  89999999999999988773211        1111222  24689999999976


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      .-.|
T Consensus        79 ~~~~   82 (306)
T cd05291          79 PQKP   82 (306)
T ss_pred             CCCC
Confidence            5444

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]

Probab=97.70  E-value=0.00016  Score=70.11  Aligned_cols=77  Identities=19%  Similarity=0.318  Sum_probs=60.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--------ccccccccc---------CCC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--------RPFEDILNF---------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~---------~~~  362 (454)
                      ..+++++|.|| +|.|++++..|++.|++|.++.|+.+|.++|++++....        +++.+.++.         ...
T Consensus         4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~l~~~~~   83 (265)
T COG0300           4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDELKERGG   83 (265)
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHHHHhcCC
Confidence            45789999997 699999999999999999999999999999999886422        233221110         113


Q ss_pred             CccEEEECCCCCCCC
Q 012866          363 KGAILANATPLGMHP  377 (454)
Q Consensus       363 ~~divInat~~g~~p  377 (454)
                      ..|++||+...|...
T Consensus        84 ~IdvLVNNAG~g~~g   98 (265)
T COG0300          84 PIDVLVNNAGFGTFG   98 (265)
T ss_pred             cccEEEECCCcCCcc
Confidence            589999999888764

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=97.69  E-value=6.5e-05  Score=74.30  Aligned_cols=111  Identities=16%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      ++.|||.|-+|++++..|.+.|.+|+++||++++++.+.+. +...  ..+..+ ...++|+||.|.|...  ......+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~~aDivi~~vp~~~--~~~~v~~   74 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAA-GAVT--AETARQ-VTEQADVIFTMVPDSP--QVEEVAF   74 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCcc--cCCHHH-HHhcCCEEEEecCCHH--HHHHHHc
Confidence            37899999999999999999999999999999998887653 3221  122222 3457899999988531  1111111


Q ss_pred             Ch----hcccCCcEEEEEecCCCCC--HHHHHHHHCCCceecc
Q 012866          385 SE----ETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIVSG  421 (454)
Q Consensus       385 ~~----~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~~G  421 (454)
                      ..    ..++++.+++|+...+..+  .+.+.++++|..+++.
T Consensus        75 ~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~  117 (291)
T TIGR01505        75 GENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDA  117 (291)
T ss_pred             CcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEec
Confidence            11    2345678999987764432  4666777788776664

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.67  E-value=7.8e-05  Score=74.22  Aligned_cols=110  Identities=20%  Similarity=0.220  Sum_probs=73.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-ccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-PFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      +|.|||.|-||.+++..|.+.|.+|+++||++++++++.+ .+.... +.+++.+ ...++|+||.+.|.+..  ... .
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-~g~~~~~~~~e~~~-~~~~~dvvi~~v~~~~~--~~~-v   76 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAE-EGATGADSLEELVA-KLPAPRVVWLMVPAGEI--TDA-T   76 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-CCCeecCCHHHHHh-hcCCCCEEEEEecCCcH--HHH-H
Confidence            5889999999999999999999999999999999988855 343321 2333322 12246899988875311  000 0


Q ss_pred             CC--hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCcee
Q 012866          384 VS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       384 i~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~  419 (454)
                      +.  ...++++.+++|+.-. |..| .+.+.++++|+.++
T Consensus        77 ~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~  116 (301)
T PRK09599         77 IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFV  116 (301)
T ss_pred             HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEE
Confidence            11  1235678899999554 5444 35567778887654

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.67  E-value=5.2e-05  Score=74.44  Aligned_cols=117  Identities=20%  Similarity=0.138  Sum_probs=80.0

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-hcCCccccccc-cccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD-VMGAARPFEDI-LNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~-~~~~~~~~~~l-~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      .+++|+|.|.+|++++..|++.|..+.|++++..++...+.. ++.......+. .. ....+|+||-|+|+......-.
T Consensus         4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~-~~~~aD~VivavPi~~~~~~l~   82 (279)
T COG0287           4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAE-AAAEADLVIVAVPIEATEEVLK   82 (279)
T ss_pred             cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhh-hcccCCEEEEeccHHHHHHHHH
Confidence            579999999999999999999999999999988776554443 44322111111 12 3456899999999864332110


Q ss_pred             CCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCC---ceeccHHHH
Q 012866          382 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGA---IIVSGVEMF  425 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~---~~~~Gl~ml  425 (454)
                      . +.+ .++++.+|.|+...  .++.++.+++.+-   .++.|-.|+
T Consensus        83 ~-l~~-~l~~g~iv~Dv~S~--K~~v~~a~~~~~~~~~~~vg~HPM~  125 (279)
T COG0287          83 E-LAP-HLKKGAIVTDVGSV--KSSVVEAMEKYLPGDVRFVGGHPMF  125 (279)
T ss_pred             H-hcc-cCCCCCEEEecccc--cHHHHHHHHHhccCCCeeEecCCCC
Confidence            0 111 46788999999765  5777788887653   477776665

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.65  E-value=0.00019  Score=72.64  Aligned_cols=96  Identities=18%  Similarity=0.245  Sum_probs=68.0

Q ss_pred             CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCC---ccccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      -++++|+|+|.-|+.-+.++.. +.. +|+||||++++++++++++...   ....+++++ .+.++|+|+.||+.. .+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~-av~~ADIIvtaT~S~-~~  206 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAE-AVEGADIITTVTADK-TN  206 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHH-HHhcCCEEEEecCCC-CC
Confidence            4789999999999998887764 456 8999999999999999888532   112234444 567899999999742 11


Q ss_pred             CCCCCCCChhcccCCcEEEEE-ecCCC
Q 012866          378 NTDRVPVSEETLRDYQLVFDA-VYTPR  403 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~-~y~P~  403 (454)
                         ...+..+|++++..|.=+ .|.|.
T Consensus       207 ---~Pvl~~~~lkpG~hV~aIGs~~p~  230 (346)
T PRK07589        207 ---ATILTDDMVEPGMHINAVGGDCPG  230 (346)
T ss_pred             ---CceecHHHcCCCcEEEecCCCCCC
Confidence               012667888887754433 35554

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.64  E-value=0.00012  Score=67.42  Aligned_cols=98  Identities=22%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             CCCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccccc----ccccCCCCccEEEECCC
Q 012866          298 GSPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED----ILNFQPEKGAILANATP  372 (454)
Q Consensus       298 ~~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~----l~~~~~~~~divInat~  372 (454)
                      +.+++||+|+|||-+ -.|+.++.-|.+.|+.|++++.+...-..-.........+..+    +.+ ...++||||.|++
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~-~~~~ADIVIsAvG  135 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLD-CLSQSDVVITGVP  135 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHH-HhhhCCEEEEccC
Confidence            357999999999987 5599999999999999999963321100000000000000011    333 4578999998886


Q ss_pred             CCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          373 LGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       373 ~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                      .   |.   ..+..++++++.+|+|+-.+-
T Consensus       136 ~---~~---~~i~~d~ik~GavVIDVGi~~  159 (197)
T cd01079         136 S---PN---YKVPTELLKDGAICINFASIK  159 (197)
T ss_pred             C---CC---CccCHHHcCCCcEEEEcCCCc
Confidence            4   21   127889999999999998763

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.64  E-value=0.00035  Score=72.93  Aligned_cols=92  Identities=26%  Similarity=0.242  Sum_probs=68.6

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.||+++|+|.|.+|++++..|..+|++|+++++++.++..... .+....++++    .++.+|+||.+|.  . +
T Consensus       249 ~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~-~G~~~~~lee----ll~~ADIVI~atG--t-~  320 (476)
T PTZ00075        249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAM-EGYQVVTLED----VVETADIFVTATG--N-K  320 (476)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHh-cCceeccHHH----HHhcCCEEEECCC--c-c
Confidence            46789999999999999999999999999999999999887644322 3444444443    3457899999873  2 1


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecC
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYT  401 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~  401 (454)
                          ..+..+.   ++++.+++++...
T Consensus       321 ----~iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        321 ----DIITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             ----cccCHHHHhccCCCcEEEEcCCC
Confidence                1355444   5788899998766

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.63  E-value=6.6e-05  Score=74.93  Aligned_cols=117  Identities=16%  Similarity=0.165  Sum_probs=74.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      .+++.|||+|.+|++++..|.+.|.  +|++++|+.++.+.+. ..+.......+..+ .+.++|+||.|+|.......-
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~-~~g~~~~~~~~~~~-~~~~aDvViiavp~~~~~~v~   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAR-ELGLGDRVTTSAAE-AVKGADLVILCVPVGASGAVA   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHH-hCCCCceecCCHHH-HhcCCCEEEECCCHHHHHHHH
Confidence            3689999999999999999999985  8999999988766543 34421111122222 346789999999975432100


Q ss_pred             CCCCChhcccCCcEEEEEecCCCCCHHHHHHHH---CCCceeccHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF  425 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~---~G~~~~~Gl~ml  425 (454)
                      . .+ ...++++.+++|+...  ....+++..+   .+..++++-.|.
T Consensus        84 ~-~l-~~~l~~~~iv~dvgs~--k~~~~~~~~~~~~~~~~~v~~hPm~  127 (307)
T PRK07502         84 A-EI-APHLKPGAIVTDVGSV--KASVIAAMAPHLPEGVHFIPGHPLA  127 (307)
T ss_pred             H-HH-HhhCCCCCEEEeCccc--hHHHHHHHHHhCCCCCeEEeCCCCC
Confidence            0 01 1245677889998643  2344454443   355677665554

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.63  E-value=0.00012  Score=68.60  Aligned_cols=74  Identities=15%  Similarity=0.128  Sum_probs=51.7

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .++++++|+|+|+|.+|...+..|.+.|++|+|++++.. ..++++..-...+. -..+....+.++|+||.||..
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~-~~~~~~~~l~~adlViaaT~d   80 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWK-QKEFEPSDIVDAFLVIAATND   80 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEE-ecCCChhhcCCceEEEEcCCC
Confidence            568899999999999999999999999999999998763 33455443111110 011111135678999998854

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.62  E-value=0.00013  Score=72.41  Aligned_cols=107  Identities=19%  Similarity=0.239  Sum_probs=72.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      ++.|||.|-+|.+++..|.+.|.+|+++||++++++++.+. +...  ..+..+ ...++|+||-++|....  ......
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~-g~~~--~~s~~~-~~~~aDvVi~~vp~~~~--~~~vl~   76 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDK-GATP--AASPAQ-AAAGAEFVITMLPNGDL--VRSVLF   76 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc-CCcc--cCCHHH-HHhcCCEEEEecCCHHH--HHHHHc
Confidence            68999999999999999999999999999999999888664 2221  112222 24568999999885421  001000


Q ss_pred             C----hhcccCCcEEEEEecCCCC--CHHHHHHHHCCCc
Q 012866          385 S----EETLRDYQLVFDAVYTPRK--TRLLKDAEAAGAI  417 (454)
Q Consensus       385 ~----~~~l~~~~~v~D~~y~P~~--T~ll~~A~~~G~~  417 (454)
                      .    ...++++.+++|+.-.+..  ..+.++.+++|+.
T Consensus        77 ~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         77 GENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            0    1125677899999876543  3455666677754

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.61  E-value=9.8e-05  Score=69.20  Aligned_cols=71  Identities=21%  Similarity=0.254  Sum_probs=52.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcCC--ccc------
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMGA--ARP------  352 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt-------------------~~~a~~la~~~~~~--~~~------  352 (454)
                      +++++|+|+|+||.|..++..|+..|+ ++++++++                   ..|++.+++.+...  .+.      
T Consensus        19 l~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~   98 (202)
T TIGR02356        19 LLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKE   98 (202)
T ss_pred             hcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehh
Confidence            567899999999999999999999999 99999988                   45777776666421  111      


Q ss_pred             -c--ccccccCCCCccEEEECCC
Q 012866          353 -F--EDILNFQPEKGAILANATP  372 (454)
Q Consensus       353 -~--~~l~~~~~~~~divInat~  372 (454)
                       +  +++.+ ...++|+||+|+.
T Consensus        99 ~i~~~~~~~-~~~~~D~Vi~~~d  120 (202)
T TIGR02356        99 RVTAENLEL-LINNVDLVLDCTD  120 (202)
T ss_pred             cCCHHHHHH-HHhCCCEEEECCC
Confidence             1  11222 3567899999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.61  E-value=0.00032  Score=74.21  Aligned_cols=99  Identities=20%  Similarity=0.191  Sum_probs=69.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccccc-------------------------
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED-------------------------  355 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~-------------------------  355 (454)
                      ..+.+|+|+|+|.+|++++..+..+|++|++++++.++.+ .++.++...+.++.                         
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle-~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~  240 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE-QVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMEL  240 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCeEEeccccccccccccceeecCHHHHHHHHHH
Confidence            3468999999999999999999999999999999988754 55567764422221                         


Q ss_pred             ccccCCCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecCCC
Q 012866          356 ILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPR  403 (454)
Q Consensus       356 l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~P~  403 (454)
                      +.+ ..+++|++|+|.-+.-.|.  +..+.++   .++++.+++|+...+.
T Consensus       241 ~~e-~~~~~DIVI~TalipG~~a--P~Lit~emv~~MKpGsvIVDlA~d~G  288 (511)
T TIGR00561       241 FAA-QAKEVDIIITTALIPGKPA--PKLITEEMVDSMKAGSVIVDLAAEQG  288 (511)
T ss_pred             HHH-HhCCCCEEEECcccCCCCC--CeeehHHHHhhCCCCCEEEEeeeCCC
Confidence            112 2467999999884321111  1124444   4678899999988664

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.59  E-value=0.00014  Score=76.76  Aligned_cols=110  Identities=16%  Similarity=0.186  Sum_probs=74.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV---MGA----ARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~---~~~----~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      .++-+||-|-||++++..|.+.|++|+|+|||.++++++.+..   |..    ..+.+++.+ .++++|+||-+.+.+-.
T Consensus         7 ~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~-~l~~~dvIi~~v~~~~a   85 (493)
T PLN02350          7 SRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVL-SIQKPRSVIILVKAGAP   85 (493)
T ss_pred             CCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHh-cCCCCCEEEEECCCcHH
Confidence            3699999999999999999999999999999999999998742   221    112333322 34568999988775421


Q ss_pred             CCCCCCCCC--hhcccCCcEEEEEecC-CCCCHHH-HHHHHCCCc
Q 012866          377 PNTDRVPVS--EETLRDYQLVFDAVYT-PRKTRLL-KDAEAAGAI  417 (454)
Q Consensus       377 p~~~~~~i~--~~~l~~~~~v~D~~y~-P~~T~ll-~~A~~~G~~  417 (454)
                        ++.. +.  ...+.++.+++|..-. |..|.-+ ++++++|+.
T Consensus        86 --V~~V-i~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~  127 (493)
T PLN02350         86 --VDQT-IKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLL  127 (493)
T ss_pred             --HHHH-HHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence              1111 11  1235678999999876 5555433 445566654

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.58  E-value=0.00024  Score=73.58  Aligned_cols=92  Identities=25%  Similarity=0.275  Sum_probs=65.8

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|++|+|+|.|.+|+.++..|..+|++|+++++++.++...+. .+....++++    ....+|+||.||..   + 
T Consensus       208 ~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~-~G~~v~~l~e----al~~aDVVI~aTG~---~-  278 (425)
T PRK05476        208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM-DGFRVMTMEE----AAELGDIFVTATGN---K-  278 (425)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh-cCCEecCHHH----HHhCCCEEEECCCC---H-
Confidence            4578999999999999999999999999999999999988755433 2443333332    24578999999842   1 


Q ss_pred             CCCCCCCh---hcccCCcEEEEEecCC
Q 012866          379 TDRVPVSE---ETLRDYQLVFDAVYTP  402 (454)
Q Consensus       379 ~~~~~i~~---~~l~~~~~v~D~~y~P  402 (454)
                         ..+..   +.++++.+++.+-..+
T Consensus       279 ---~vI~~~~~~~mK~GailiNvG~~d  302 (425)
T PRK05476        279 ---DVITAEHMEAMKDGAILANIGHFD  302 (425)
T ss_pred             ---HHHHHHHHhcCCCCCEEEEcCCCC
Confidence               12332   3456777777776543

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.57  E-value=9.8e-05  Score=73.44  Aligned_cols=111  Identities=20%  Similarity=0.235  Sum_probs=71.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      ++.|||.|.+|.+++..|.+.|.+|+++||++++++++.+ .+... .+.+++.+ ...++|+||.++|...  .... .
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~-~g~~~~~s~~~~~~-~~~~advVi~~vp~~~--~~~~-v   76 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGK-LGITARHSLEELVS-KLEAPRTIWVMVPAGE--VTES-V   76 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH-CCCeecCCHHHHHH-hCCCCCEEEEEecCch--HHHH-H
Confidence            5889999999999999999999999999999999888754 34322 12233221 1223689999988541  0000 0


Q ss_pred             CC--hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCceec
Q 012866          384 VS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIVS  420 (454)
Q Consensus       384 i~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~~  420 (454)
                      +.  ...++++.+++|+.-. |..+ .+.++++++|+.+++
T Consensus        77 ~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vd  117 (299)
T PRK12490         77 IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVD  117 (299)
T ss_pred             HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEe
Confidence            11  1235678899999554 5433 344455566765443

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=97.57  E-value=0.00015  Score=70.51  Aligned_cols=111  Identities=15%  Similarity=0.244  Sum_probs=74.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ..+++-.||-|-||.+++..|.+.|++|+||||+.++.+.+.+. |... -+-.++    .+.+|+||.+.|-.  .+..
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~-Ga~v~~sPaeV----ae~sDvvitmv~~~--~~v~  106 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEA-GARVANSPAEV----AEDSDVVITMVPNP--KDVK  106 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHh-chhhhCCHHHH----HhhcCEEEEEcCCh--HhhH
Confidence            46889999999999999999999999999999999999998765 3322 222333    34689999766531  1111


Q ss_pred             CCCCCh----hcccCCcEE-EEEecC-CC-CCHHHHHHHHCCCcee
Q 012866          381 RVPVSE----ETLRDYQLV-FDAVYT-PR-KTRLLKDAEAAGAIIV  419 (454)
Q Consensus       381 ~~~i~~----~~l~~~~~v-~D~~y~-P~-~T~ll~~A~~~G~~~~  419 (454)
                      ...+..    +.++++... +|+... |. ...+-++++.+|+..+
T Consensus       107 ~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~v  152 (327)
T KOG0409|consen  107 DVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFV  152 (327)
T ss_pred             HHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEE
Confidence            111221    123354444 799876 44 3556667777787654

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.57  E-value=0.00036  Score=69.94  Aligned_cols=114  Identities=21%  Similarity=0.255  Sum_probs=80.3

Q ss_pred             CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      -+.+.|||+|..|+.-+.++.. .+. +|.|++|+++.++++++.+...    ....++.++ .++++|+||.|||.-. 
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~-av~~aDiIvt~T~s~~-  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEE-AVEGADIVVTATPSTE-  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHH-HhhcCCEEEEecCCCC-
Confidence            4689999999999999999886 467 9999999999999999776432    233444444 5778999999998532 


Q ss_pred             CCCCCCCCChhcccCCcEEEEEe-cCCCCCHHHHHHHHCC-CceeccHH
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAV-YTPRKTRLLKDAEAAG-AIIVSGVE  423 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~-y~P~~T~ll~~A~~~G-~~~~~Gl~  423 (454)
                      |     .+..+|++++..+-=+- +.|..+++-.+..++- +.+++=++
T Consensus       208 P-----il~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra~~vvvD~~~  251 (330)
T COG2423         208 P-----VLKAEWLKPGTHINAIGADAPGKRELDPEVLARADRVVVDSLE  251 (330)
T ss_pred             C-----eecHhhcCCCcEEEecCCCCcccccCCHHHHHhcCeEEEcCHH
Confidence            2     36678898876554443 2455555555555544 55555444

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.56  E-value=0.00055  Score=71.86  Aligned_cols=99  Identities=23%  Similarity=0.206  Sum_probs=61.6

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhc---CCccccccccccCCCCccEEEECCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVM---GAARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~---~~~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      +++|+++|+|+|++|++++..|++.|++|++++++. +..++..+++.   ......+...+ ...++|+||+++..   
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~d~vv~~~g~---   78 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEE-FLEGVDLVVVSPGV---   78 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchh-HhhcCCEEEECCCC---
Confidence            468999999999999999999999999999999985 33333333331   11111010111 12345666665422   


Q ss_pred             CCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHH
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQ  428 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Q  428 (454)
                                               +..-+.+.+|+++|+.++..++++..+
T Consensus        79 -------------------------~~~~~~~~~a~~~~i~~~~~~~~~~~~  105 (450)
T PRK14106         79 -------------------------PLDSPPVVQAHKKGIEVIGEVELAYRF  105 (450)
T ss_pred             -------------------------CCCCHHHHHHHHCCCcEEeHHHHHHhh
Confidence                                     123446677777777777666665443

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=97.56  E-value=0.00015  Score=71.87  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=74.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      .++.|||.|.+|.+++..|.+.|.+|+++||+.++.+++.+. +...  .++..+ ...++|+||.++|....  .....
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-g~~~--~~~~~e-~~~~~d~vi~~vp~~~~--~~~v~   76 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAA-GAET--ASTAKA-VAEQCDVIITMLPNSPH--VKEVA   76 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCee--cCCHHH-HHhcCCEEEEeCCCHHH--HHHHH
Confidence            368999999999999999999999999999999998877542 2211  122222 23568999999985321  01110


Q ss_pred             CC----hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCceec
Q 012866          384 VS----EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIVS  420 (454)
Q Consensus       384 i~----~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~~  420 (454)
                      ..    ...++++.+++|+...+..+  .+.+.++++|..+++
T Consensus        77 ~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d  119 (296)
T PRK11559         77 LGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLD  119 (296)
T ss_pred             cCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence            10    12346778999998875433  455566667765544

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.56  E-value=0.0001  Score=74.36  Aligned_cols=117  Identities=14%  Similarity=0.185  Sum_probs=83.9

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|+..|++|+.++|+.+......+     .  ..++.+ .++++|+|+.+.|..-  .
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~~-----~--~~~l~e-ll~~aDiVil~lP~t~--~  211 (330)
T PRK12480        142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLT-----Y--KDSVKE-AIKDADIISLHVPANK--E  211 (330)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhhh-----c--cCCHHH-HHhcCCEEEEeCCCcH--H
Confidence            4578999999999999999999999999999999999765332111     1  123333 4567999999998642  1


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHHH
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                      +. ..+..+   .++++.+++++.-.+. ++.-|.+|-+.|...--|+|.+-
T Consensus       212 t~-~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~  262 (330)
T PRK12480        212 SY-HLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYE  262 (330)
T ss_pred             HH-HHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccC
Confidence            11 123333   3567889999987766 67778888888876666777653

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.53  E-value=0.00051  Score=73.07  Aligned_cols=96  Identities=27%  Similarity=0.274  Sum_probs=63.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      +.+++|+|+|.|++|++++..|...|++|+++++..++.+.+ +..+.....-....+ .+.++|+||.+..        
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l-~~~g~~~~~~~~~~~-~l~~~D~VV~SpG--------   79 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPH-AERGVATVSTSDAVQ-QIADYALVVTSPG--------   79 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HhCCCEEEcCcchHh-HhhcCCEEEECCC--------
Confidence            467899999999999999999999999999999876654432 333322111000001 1223455553221        


Q ss_pred             CCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                                          -|...|.+++|+++|++++.-++++.
T Consensus        80 --------------------i~~~~p~~~~a~~~gi~v~~~iel~~  105 (488)
T PRK03369         80 --------------------FRPTAPVLAAAAAAGVPIWGDVELAW  105 (488)
T ss_pred             --------------------CCCCCHHHHHHHHCCCcEeeHHHHhh
Confidence                                13356778999999999988888753

>PRK08328 hypothetical protein; Provisional

Probab=97.53  E-value=0.00012  Score=70.13  Aligned_cols=43  Identities=23%  Similarity=0.438  Sum_probs=36.6

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLA  343 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la  343 (454)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+.-....|-
T Consensus        25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~   68 (231)
T PRK08328         25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLN   68 (231)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhc
Confidence            457899999999999999999999999 9999998765544443

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.51  E-value=0.00021  Score=70.11  Aligned_cols=107  Identities=19%  Similarity=0.244  Sum_probs=75.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHC--CCeE-EEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSR--GARV-VIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~--G~~v-~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..++.|||.|.+|+.++..|...  ++++ .+++|++++++++++.++..  ..+++++    ..+.|+|+.|+|.....
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eel----l~~~D~Vvi~tp~~~h~   81 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQL----ATHADIVVEAAPASVLR   81 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHH----hcCCCEEEECCCcHHHH
Confidence            46899999999999999999863  6665 48999999999999988742  2234444    34689999999865321


Q ss_pred             CCCCCCCChhcccCCcEEEEEecC-C-CCCHHHHHHHHCCCce
Q 012866          378 NTDRVPVSEETLRDYQLVFDAVYT-P-RKTRLLKDAEAAGAII  418 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~y~-P-~~T~ll~~A~~~G~~~  418 (454)
                           .+....++.+.-++...-. . ..-.+.+.|++.|.++
T Consensus        82 -----e~~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l  119 (271)
T PRK13302         82 -----AIVEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQI  119 (271)
T ss_pred             -----HHHHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCEE
Confidence                 1234456666555554322 1 1356778889999875

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.49  E-value=0.00098  Score=70.66  Aligned_cols=98  Identities=28%  Similarity=0.244  Sum_probs=61.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCCcccc--ccccccCCCCccEEEECCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAARPF--EDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~~~~~~~--~~l~~~~~~~~divInat~~g~  375 (454)
                      ..+++++|+|+|+|++|++++..|.++|++|+++++.. +.+..+.+.+...-+.+  .+-.. ....+|+||-+     
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~-~~~~~D~Vv~s-----   85 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT-LPEDTDLVVTS-----   85 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc-ccCCCCEEEEC-----
Confidence            45678999999999999999999999999999998654 33333333321110000  00000 00112333321     


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                                            .- -|..+|+++.|+++|+++++..+.+
T Consensus        86 ----------------------~G-i~~~~~~~~~a~~~gi~v~~~~e~~  112 (480)
T PRK01438         86 ----------------------PG-WRPDAPLLAAAADAGIPVWGEVELA  112 (480)
T ss_pred             ----------------------CC-cCCCCHHHHHHHHCCCeecchHHHH
Confidence                                  11 1346788899999999999888864

>PRK06436 glycerate dehydrogenase; Provisional

Probab=97.47  E-value=0.00027  Score=70.42  Aligned_cols=67  Identities=19%  Similarity=0.259  Sum_probs=48.4

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ..+.||++.|+|.|.+|++++..|+..|++|..++|+....       +... ...++++ .+.++|+|+.+.|..
T Consensus       118 ~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-------~~~~-~~~~l~e-ll~~aDiv~~~lp~t  184 (303)
T PRK06436        118 KLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-------GISS-IYMEPED-IMKKSDFVLISLPLT  184 (303)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-------Cccc-ccCCHHH-HHhhCCEEEECCCCC
Confidence            35789999999999999999999999999999999984321       1110 0123333 345678888888753

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=97.47  E-value=8.7e-05  Score=74.21  Aligned_cols=69  Identities=14%  Similarity=0.082  Sum_probs=49.4

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..++++++.|+|.|.+|+.++..|...|++|..++|+.++..... .    ..+.+++.+ .++++|+|+.+.|.
T Consensus       132 ~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~-~----~~~~~~l~e-~l~~aDvvv~~lPl  200 (312)
T PRK15469        132 YHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQ-S----FAGREELSA-FLSQTRVLINLLPN  200 (312)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCce-e----ecccccHHH-HHhcCCEEEECCCC
Confidence            357899999999999999999999999999999999765421110 0    012233433 35567888877775

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.46  E-value=0.00057  Score=71.73  Aligned_cols=38  Identities=21%  Similarity=0.120  Sum_probs=34.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      +++|+++|+|.|++|++++..|++.|++|++++++...
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~   40 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFS   40 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCcc
Confidence            46889999999999999999999999999999987544

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.45  E-value=7e-05  Score=78.41  Aligned_cols=113  Identities=18%  Similarity=0.303  Sum_probs=74.9

Q ss_pred             eEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          305 MFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       305 ~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      ++.|+| .|++|++++..|.+.|.+|++++|+.+++++++.+++...  ..+..+ .+.++|+||.|+|......    .
T Consensus         2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~--~~~~~e-~~~~aDvVIlavp~~~~~~----v   74 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEY--ANDNID-AAKDADIVIISVPINVTED----V   74 (437)
T ss_pred             EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCee--ccCHHH-HhccCCEEEEecCHHHHHH----H
Confidence            589998 7999999999999999999999999998888888776532  122222 3457899999998643211    1


Q ss_pred             CC--hhcccCCcEEEEEecC-CCCCHHHHHHHHCCCceeccHHH
Q 012866          384 VS--EETLRDYQLVFDAVYT-PRKTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       384 i~--~~~l~~~~~v~D~~y~-P~~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                      +.  ...++++.+++|+.-. +.....+++....|..++.+-.|
T Consensus        75 l~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~~~V~~HPm  118 (437)
T PRK08655         75 IKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPEGVEILPTHPM  118 (437)
T ss_pred             HHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCCCCEEEEcCCC
Confidence            11  1235678899999853 21222222222235666665544

>PRK08605 D-lactate dehydrogenase; Validated

Probab=97.44  E-value=0.0002  Score=72.24  Aligned_cols=117  Identities=17%  Similarity=0.151  Sum_probs=82.4

Q ss_pred             CCCCCceEEEEccchhHHHHHHHH-HHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGA-KSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L-~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..+.|+++.|||.|.+|++++..| ...|++|+.++|+..+...   .. ...  ..++.+ .+.++|+|+.++|..-. 
T Consensus       142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~-~~~--~~~l~e-ll~~aDvIvl~lP~t~~-  213 (332)
T PRK08605        142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---TY-VDY--KDTIEE-AVEGADIVTLHMPATKY-  213 (332)
T ss_pred             ceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---hh-ccc--cCCHHH-HHHhCCEEEEeCCCCcc-
Confidence            457899999999999999999999 4578899999998654311   11 111  123433 35679999999986422 


Q ss_pred             CCCCCCCCh---hcccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866          378 NTDRVPVSE---ETLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       378 ~~~~~~i~~---~~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                       + ...+..   +.++++.+++++.-.+. +|.-+..|-+.|...--|++.+
T Consensus       214 -t-~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~  263 (332)
T PRK08605        214 -N-HYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTY  263 (332)
T ss_pred             -h-hhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecc
Confidence             1 123443   34678899999988754 7888888888887666666665

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=97.43  E-value=0.00032  Score=70.22  Aligned_cols=114  Identities=18%  Similarity=0.239  Sum_probs=75.8

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.||++.|||.|.+|++++..++..|++|..++|+....     ..+.   ...++++ .++++|+|+.+.|..  |.
T Consensus       141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~-----~~~~---~~~~l~e-ll~~sDvv~lh~Plt--~~  209 (311)
T PRK08410        141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK-----NEEY---ERVSLEE-LLKTSDIISIHAPLN--EK  209 (311)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc-----ccCc---eeecHHH-HhhcCCEEEEeCCCC--ch
Confidence            35789999999999999999999999999999999974221     1111   2223444 456789999988864  32


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      + .-.|+.+   .++++.+++.+.-.+. ++.-|-+|-+.|... -|+|.+
T Consensus       210 T-~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~  258 (311)
T PRK08410        210 T-KNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVL  258 (311)
T ss_pred             h-hcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecC
Confidence            2 2235543   3456666666665554 555566666666555 666654

>PRK07574 formate dehydrogenase; Provisional

Probab=97.43  E-value=0.00018  Score=73.90  Aligned_cols=71  Identities=15%  Similarity=0.086  Sum_probs=51.4

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..+.|+++.|||.|.+|++++..|+..|++|..++|+... .+....++...  ..++++ .++.+|+|+.+.|.
T Consensus       188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~-~~~~~~~g~~~--~~~l~e-ll~~aDvV~l~lPl  258 (385)
T PRK07574        188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLP-EEVEQELGLTY--HVSFDS-LVSVCDVVTIHCPL  258 (385)
T ss_pred             eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCc-hhhHhhcCcee--cCCHHH-HhhcCCEEEEcCCC
Confidence            4578999999999999999999999999999999998632 22223333221  123333 34668888888875

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=97.42  E-value=0.00027  Score=63.17  Aligned_cols=69  Identities=17%  Similarity=0.167  Sum_probs=52.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      +++|++.|||.|.-|++-+..|.+.|++|+|..|+.++..+.|++-|.+..++++.    .+.+|+|+..+|-
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eA----v~~aDvV~~L~PD   70 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEA----VKKADVVMLLLPD   70 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHH----HHC-SEEEE-S-H
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHH----HhhCCEEEEeCCh
Confidence            46899999999999999999999999999999999988888888877666555543    3568999998874

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.42  E-value=0.00019  Score=73.76  Aligned_cols=71  Identities=20%  Similarity=0.265  Sum_probs=52.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcC--Ccccc---c-
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMG--AARPF---E-  354 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt-------------------~~~a~~la~~~~~--~~~~~---~-  354 (454)
                      +++++|+|+|+||.|..++..|+..|+ +|++++++                   ..|++.+++.+..  ..+.+   . 
T Consensus       133 l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~~  212 (376)
T PRK08762        133 LLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQE  212 (376)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEec
Confidence            346889999999999999999999999 99999998                   5678877776632  11111   1 


Q ss_pred             -----cccccCCCCccEEEECCC
Q 012866          355 -----DILNFQPEKGAILANATP  372 (454)
Q Consensus       355 -----~l~~~~~~~~divInat~  372 (454)
                           ++.+ .+.++|+||+||-
T Consensus       213 ~~~~~~~~~-~~~~~D~Vv~~~d  234 (376)
T PRK08762        213 RVTSDNVEA-LLQDVDVVVDGAD  234 (376)
T ss_pred             cCChHHHHH-HHhCCCEEEECCC
Confidence                 1111 2467999999984

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.41  E-value=0.0027  Score=60.59  Aligned_cols=131  Identities=20%  Similarity=0.230  Sum_probs=86.2

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHH
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAKS  341 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nR----------t~~~a~~  341 (454)
                      -+.|...+++..+...         +..+++++++|.|.|.+|+.++..|.+.|++|+ |.+.          +.++..+
T Consensus        10 Tg~Gv~~~~~~~~~~~---------~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~   80 (227)
T cd01076          10 TGRGVAYATREALKKL---------GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLA   80 (227)
T ss_pred             chHHHHHHHHHHHHhc---------CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHH
Confidence            3578888887766521         246889999999999999999999999999776 7777          6677666


Q ss_pred             HHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc--CCcEEEEEecCCCCCHHHHHHH
Q 012866          342 LASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKTRLLKDAE  412 (454)
Q Consensus       342 la~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T~ll~~A~  412 (454)
                      ..++.+..       .++.+++-   ..++|++|-|+.-+.        +..+...  ..++|+.-.-+|....--+.-+
T Consensus        81 ~~~~~g~l~~~~~~~~~~~~~i~---~~~~Dvlip~a~~~~--------i~~~~~~~l~a~~I~egAN~~~t~~a~~~L~  149 (227)
T cd01076          81 YKKEHGSVLGFPGAERITNEELL---ELDCDILIPAALENQ--------ITADNADRIKAKIIVEAANGPTTPEADEILH  149 (227)
T ss_pred             HHHhcCCcccCCCceecCCccce---eecccEEEecCccCc--------cCHHHHhhceeeEEEeCCCCCCCHHHHHHHH
Confidence            65655421       11222222   236899999886443        2222211  2467888887776433334445


Q ss_pred             HCCCceeccHH
Q 012866          413 AAGAIIVSGVE  423 (454)
Q Consensus       413 ~~G~~~~~Gl~  423 (454)
                      ++|+.+++..-
T Consensus       150 ~rGi~~~PD~~  160 (227)
T cd01076         150 ERGVLVVPDIL  160 (227)
T ss_pred             HCCCEEEChHH
Confidence            68887765543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.41  E-value=0.00027  Score=63.42  Aligned_cols=69  Identities=23%  Similarity=0.252  Sum_probs=50.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Ccc----------ccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AAR----------PFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~~----------~~~~l~~~~~~~~divInat~~  373 (454)
                      ||.|+|+|..|.|++..|+..|.+|++|.|+.+..+.+-+.-.. ...          -..++++ .++++|+||-++|.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~-a~~~ad~IiiavPs   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEE-ALEDADIIIIAVPS   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHH-HHTT-SEEEE-S-G
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHH-HhCcccEEEecccH
Confidence            58999999999999999999999999999999988888654321 110          1123433 45789999999986


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      -
T Consensus        80 ~   80 (157)
T PF01210_consen   80 Q   80 (157)
T ss_dssp             G
T ss_pred             H
Confidence            3

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=97.39  E-value=0.00037  Score=69.88  Aligned_cols=71  Identities=17%  Similarity=0.142  Sum_probs=55.5

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..++++++.|||.|.+|++++..|...|++|.+++|+.++..+.++..+....+.+   + ..+++|+|+.++|.
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~---e-aa~~ADVVvLaVPd   83 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVA---E-AAKWADVIMILLPD   83 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHH---H-HHhcCCEEEEcCCH
Confidence            35788999999999999999999999999999999987777777776665433322   2 24567888888774

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.38  E-value=0.00032  Score=69.06  Aligned_cols=129  Identities=12%  Similarity=0.099  Sum_probs=82.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC----CeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G----~~v~i~nRt~-~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      .++.+||+|.+|.+++..|.+.|    .+|+++||+. ++++.++..++....  .+..+ ...++|+||-|++......
T Consensus         4 mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~--~~~~e-~~~~aDvVilav~p~~~~~   80 (279)
T PRK07679          4 QNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGT--HNKKE-LLTDANILFLAMKPKDVAE   80 (279)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEe--CCHHH-HHhcCCEEEEEeCHHHHHH
Confidence            47999999999999999999988    4899999986 477888887765321  22222 2456899999998543221


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcC
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG  438 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g  438 (454)
                      .- ..+ ...+.++.+++|+.-.= ....+++....+++++.+..+.-.+....+-.|.+
T Consensus        81 vl-~~l-~~~~~~~~liIs~~aGi-~~~~l~~~~~~~~~v~r~mPn~~~~~~~~~t~~~~  137 (279)
T PRK07679         81 AL-IPF-KEYIHNNQLIISLLAGV-STHSIRNLLQKDVPIIRAMPNTSAAILKSATAISP  137 (279)
T ss_pred             HH-HHH-HhhcCCCCEEEEECCCC-CHHHHHHHcCCCCeEEEECCCHHHHHhcccEEEee
Confidence            00 001 12355678999984331 22334444445667777766655544455556643

>PLN03139 formate dehydrogenase; Provisional

Probab=97.37  E-value=0.00022  Score=73.16  Aligned_cols=71  Identities=24%  Similarity=0.205  Sum_probs=51.5

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..+.||++.|||.|.+|++++..|+..|++|..++|+....+ .....+...  .+++++ .+.++|+|+.+.|.
T Consensus       195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~-~~~~~g~~~--~~~l~e-ll~~sDvV~l~lPl  265 (386)
T PLN03139        195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPE-LEKETGAKF--EEDLDA-MLPKCDVVVINTPL  265 (386)
T ss_pred             cCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchh-hHhhcCcee--cCCHHH-HHhhCCEEEEeCCC
Confidence            468999999999999999999999999999999999853322 223333222  123433 34568888888874

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.37  E-value=0.00051  Score=71.03  Aligned_cols=70  Identities=27%  Similarity=0.350  Sum_probs=55.5

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      +..+.|++|+|+|+|.+|+.++..++..|++|+++++++.|++ .|..+|......+   + .+..+|+||.||.
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~-~A~~~G~~~~~~~---e-~v~~aDVVI~atG  266 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICAL-QAAMEGYEVMTME---E-AVKEGDIFVTTTG  266 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHH-HHHhcCCEEccHH---H-HHcCCCEEEECCC
Confidence            3557899999999999999999999999999999999988865 4566665443333   2 2356899999885

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.36  E-value=0.00038  Score=62.58  Aligned_cols=72  Identities=19%  Similarity=0.170  Sum_probs=50.3

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      ..+++|++|+|+|+|.+|..-+..|.+.|++|+|++.+  ..+++.+ ++........+.+..+.++|+||.||.
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~--~~~~l~~-l~~i~~~~~~~~~~dl~~a~lViaaT~   79 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPE--ICKEMKE-LPYITWKQKTFSNDDIKDAHLIYAATN   79 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCc--cCHHHHh-ccCcEEEecccChhcCCCceEEEECCC
Confidence            35689999999999999999999999999999999644  3344433 221111112222223567899999885

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.35  E-value=0.0003  Score=69.29  Aligned_cols=112  Identities=16%  Similarity=0.119  Sum_probs=74.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      +|.|||.|-+|.+++.+|.+.|.+|++++|+.++.+++.+. +.......+. + ...++|+||.|+|......    .+
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~-g~~~~~~~~~-~-~~~~aDlVilavp~~~~~~----~~   74 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIER-GLVDEASTDL-S-LLKDCDLVILALPIGLLLP----PS   74 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CCcccccCCH-h-HhcCCCEEEEcCCHHHHHH----HH
Confidence            58899999999999999999999999999998887766543 2211111111 2 2467899999998643211    01


Q ss_pred             C--hhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866          385 S--EETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       385 ~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      .  ...++++.++.|+...+  ...++++.+.+..++.+-.|.
T Consensus        75 ~~l~~~l~~~~ii~d~~Svk--~~~~~~~~~~~~~~v~~HPm~  115 (279)
T PRK07417         75 EQLIPALPPEAIVTDVGSVK--APIVEAWEKLHPRFVGSHPMA  115 (279)
T ss_pred             HHHHHhCCCCcEEEeCcchH--HHHHHHHHHhhCCceeeCCcC
Confidence            1  12356778999987653  445677766655555544443

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=97.35  E-value=0.00034  Score=70.79  Aligned_cols=71  Identities=20%  Similarity=0.288  Sum_probs=52.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH---------------------HHHHHHHHHhcC---Cc-----
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF---------------------ERAKSLASDVMG---AA-----  350 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~---------------------~~a~~la~~~~~---~~-----  350 (454)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.                     .|++.+++.+..   ..     
T Consensus        22 L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~~~  101 (338)
T PRK12475         22 IREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIVPV  101 (338)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEEEE
Confidence            567899999999999999999999999 999999974                     366666555532   11     


Q ss_pred             ---cccccccccCCCCccEEEECCC
Q 012866          351 ---RPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       351 ---~~~~~l~~~~~~~~divInat~  372 (454)
                         .+.+++.+ .+.++|+||+||-
T Consensus       102 ~~~~~~~~~~~-~~~~~DlVid~~D  125 (338)
T PRK12475        102 VTDVTVEELEE-LVKEVDLIIDATD  125 (338)
T ss_pred             eccCCHHHHHH-HhcCCCEEEEcCC
Confidence               01112233 3577999999984

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.33  E-value=0.00055  Score=70.04  Aligned_cols=68  Identities=24%  Similarity=0.299  Sum_probs=49.1

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      +..+.||++.|||.|.+|++++..|...|++|..+++.....       +. ...+.++++ .+.++|+|+..+|+.
T Consensus       111 g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~-------~~-~~~~~~L~e-ll~~sDiI~lh~PLt  178 (378)
T PRK15438        111 GFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR-------GD-EGDFRSLDE-LVQEADILTFHTPLF  178 (378)
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc-------cc-ccccCCHHH-HHhhCCEEEEeCCCC
Confidence            467899999999999999999999999999999999753211       00 011223333 345678888888764

>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]

Probab=97.33  E-value=0.00063  Score=64.67  Aligned_cols=72  Identities=32%  Similarity=0.405  Sum_probs=56.4

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-C--c--ccccc----------ccccCCCCc
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-A--A--RPFED----------ILNFQPEKG  364 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~--~--~~~~~----------l~~~~~~~~  364 (454)
                      +++|.++|.||+ |.|.|++..|.+.|++|.+..|..++.++|+.+++. .  +  .++.+          +.+ ...+.
T Consensus         4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~~~i~~~~~-~~g~i   82 (246)
T COG4221           4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGAGAALALALDVTDRAAVEAAIEALPE-EFGRI   82 (246)
T ss_pred             CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhccCceEEEeeccCCHHHHHHHHHHHHH-hhCcc
Confidence            456889999985 999999999999999999999999999999999983 2  1  12211          112 23568


Q ss_pred             cEEEECCCC
Q 012866          365 AILANATPL  373 (454)
Q Consensus       365 divInat~~  373 (454)
                      |++||...+
T Consensus        83 DiLvNNAGl   91 (246)
T COG4221          83 DILVNNAGL   91 (246)
T ss_pred             cEEEecCCC
Confidence            999997643

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=97.33  E-value=0.00048  Score=69.12  Aligned_cols=71  Identities=21%  Similarity=0.317  Sum_probs=51.4

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      +.+++||++.|+|.|.+|++++..++..|++|..++|+..  .+..++++..+.++++    .++++|+|+...|..
T Consensus       141 ~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~--~~~~~~~~~~y~~l~e----ll~~sDii~l~~Plt  211 (324)
T COG1052         141 GFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN--PEAEKELGARYVDLDE----LLAESDIISLHCPLT  211 (324)
T ss_pred             ccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCC--hHHHhhcCceeccHHH----HHHhCCEEEEeCCCC
Confidence            3568899999999999999999999988889999999864  2222333333333333    245677777777754

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.31  E-value=0.00037  Score=67.68  Aligned_cols=101  Identities=14%  Similarity=0.102  Sum_probs=66.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHhc-CCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA---RVVIFDIDFERAKSLASDVM-GAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~---~v~i~nRt~~~a~~la~~~~-~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ++.|||+|.+|++++..|.+.|.   .+.+++|+.++++++++.++ ...  .++..+ ...++|+||-|++......  
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~--~~~~~~-~~~~aDvVilav~p~~~~~--   76 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRI--AKDNQA-VVDRSDVVFLAVRPQIAEE--   76 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceE--eCCHHH-HHHhCCEEEEEeCHHHHHH--
Confidence            58899999999999999998884   47899999999999988774 222  122222 2346899999998432111  


Q ss_pred             CCCCChhcccCCcEEEEEecCCCCCHHHHHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA  413 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~  413 (454)
                        .+..-.+.++.++++++ .+.....++....
T Consensus        77 --vl~~l~~~~~~~vis~~-ag~~~~~l~~~~~  106 (258)
T PRK06476         77 --VLRALRFRPGQTVISVI-AATDRAALLEWIG  106 (258)
T ss_pred             --HHHHhccCCCCEEEEEC-CCCCHHHHHHHhC
Confidence              01111234566777765 4555555555443

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=97.31  E-value=0.00097  Score=70.74  Aligned_cols=97  Identities=20%  Similarity=0.210  Sum_probs=68.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccc--c-----------c-----------
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE--D-----------I-----------  356 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~--~-----------l-----------  356 (454)
                      ..+.+|+|+|+|.+|..++..++.+|++|+++++++++.+ .++.+|.....++  +           +           
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle-~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~  241 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAE-QVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMAL  241 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHH
Confidence            4578999999999999999999999999999999998865 5666776532111  0           0           


Q ss_pred             -cccCCCCccEEEECCCCCCCCCCCCCCCCh---hcccCCcEEEEEecC
Q 012866          357 -LNFQPEKGAILANATPLGMHPNTDRVPVSE---ETLRDYQLVFDAVYT  401 (454)
Q Consensus       357 -~~~~~~~~divInat~~g~~p~~~~~~i~~---~~l~~~~~v~D~~y~  401 (454)
                       .+ ...++|++|+|+...-.+.  +..+.+   +.++++.+++|+...
T Consensus       242 ~~~-~~~gaDVVIetag~pg~~a--P~lit~~~v~~mkpGgvIVdvg~~  287 (509)
T PRK09424        242 FAE-QAKEVDIIITTALIPGKPA--PKLITAEMVASMKPGSVIVDLAAE  287 (509)
T ss_pred             HHh-ccCCCCEEEECCCCCcccC--cchHHHHHHHhcCCCCEEEEEccC
Confidence             01 1246999999996522111  112223   346788999999874

>PLN02256 arogenate dehydrogenase

Probab=97.30  E-value=0.00035  Score=69.67  Aligned_cols=118  Identities=18%  Similarity=0.100  Sum_probs=74.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      -++.++.|||.|.+|.+++..|.+.|.+|++++|+..  .+.+..++...  ..+..+....++|+||.|+|.......-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~--~~~a~~~gv~~--~~~~~e~~~~~aDvVilavp~~~~~~vl  109 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDY--SDIAAELGVSF--FRDPDDFCEEHPDVVLLCTSILSTEAVL  109 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccH--HHHHHHcCCee--eCCHHHHhhCCCCEEEEecCHHHHHHHH
Confidence            3567899999999999999999999999999999964  34555555432  2233221113589999999965322100


Q ss_pred             CCCCChhcccCCcEEEEEecCCCCCHHHHHHHHC---CCceeccHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA---GAIIVSGVEMF  425 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~---G~~~~~Gl~ml  425 (454)
                      . .+....++++.+++|+.-.  ....++..++.   ++.++.+-.|+
T Consensus       110 ~-~l~~~~l~~~~iviDv~Sv--K~~~~~~~~~~l~~~~~~V~~HPma  154 (304)
T PLN02256        110 R-SLPLQRLKRSTLFVDVLSV--KEFPKNLLLQVLPEEFDILCTHPMF  154 (304)
T ss_pred             H-hhhhhccCCCCEEEecCCc--hHHHHHHHHHhCCCCCeEEecCCCC
Confidence            0 0111235678899999863  23344555542   44455555544

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=97.29  E-value=0.00027  Score=74.47  Aligned_cols=109  Identities=17%  Similarity=0.238  Sum_probs=72.9

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-C-Cc---cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-G-AA---RPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       306 vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~-~~---~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      +.|||.|-||.+++..|.+.|++|+++||+.++++++.+... . ..   .+.+++.+ .+.++|+||-+.|.+-.  ++
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~-~l~~~dvIil~v~~~~~--v~   78 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQ-SLERPRKIMLMVKAGAP--VD   78 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHh-hcCCCCEEEEECCCcHH--HH
Confidence            679999999999999999999999999999999999987632 1 11   12233322 24567988888876421  11


Q ss_pred             CCCCC--hhcccCCcEEEEEec-CCCCCH-HHHHHHHCCCce
Q 012866          381 RVPVS--EETLRDYQLVFDAVY-TPRKTR-LLKDAEAAGAII  418 (454)
Q Consensus       381 ~~~i~--~~~l~~~~~v~D~~y-~P~~T~-ll~~A~~~G~~~  418 (454)
                      . .+.  ...+.++.+++|..- .|.+|. ..++.+++|+.+
T Consensus        79 ~-Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~f  119 (467)
T TIGR00873        79 A-VINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILF  119 (467)
T ss_pred             H-HHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEE
Confidence            1 111  123567889999975 455543 344555666543

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.29  E-value=0.00059  Score=68.49  Aligned_cols=156  Identities=22%  Similarity=0.222  Sum_probs=83.3

Q ss_pred             CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEEEe--CCCCe----EEEeeccHHH-----HHHH
Q 012866          212 DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRR--PSDGK----LIGYNTDCEA-----SITA  280 (454)
Q Consensus       212 ~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~--~~~g~----l~G~NTD~~G-----~~~~  280 (454)
                      +.++..+.+++.++... ...|..++++..+..+--.++.-.-||.|-..  ...|-    --|.|+...+     .+-+
T Consensus        35 ~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~  113 (324)
T COG0111          35 DEEELLEALADADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLA  113 (324)
T ss_pred             chHHHHhhcccCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHH
Confidence            33445566666666666 55666677776655444444444444444211  00110    1234555443     2222


Q ss_pred             HHHHHHhcC---CCCCCC---CCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccc
Q 012866          281 IEDAIKERG---YKNGTA---SFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE  354 (454)
Q Consensus       281 l~~~l~~~~---~~~~~~---~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~  354 (454)
                      +-+.+....   ..+.|.   ..+..+.||++.|||.|..|+.++..|+..|++|..+++...+...-..  +  ....+
T Consensus       114 ~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~--~--~~~~~  189 (324)
T COG0111         114 LARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVD--G--VVGVD  189 (324)
T ss_pred             HhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccc--c--ceecc
Confidence            211110000   011121   2345678999999999999999999999999999999994444211100  1  11223


Q ss_pred             cccccCCCCccEEEECCCC
Q 012866          355 DILNFQPEKGAILANATPL  373 (454)
Q Consensus       355 ~l~~~~~~~~divInat~~  373 (454)
                      ++++ .+.++|+|+..+|.
T Consensus       190 ~Ld~-lL~~sDiv~lh~Pl  207 (324)
T COG0111         190 SLDE-LLAEADILTLHLPL  207 (324)
T ss_pred             cHHH-HHhhCCEEEEcCCC
Confidence            3433 34567777777765

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=97.27  E-value=0.00057  Score=70.06  Aligned_cols=39  Identities=31%  Similarity=0.397  Sum_probs=35.6

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +..+.||++.|||.|.+|+.++..|...|++|.++++..
T Consensus       111 g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~  149 (381)
T PRK00257        111 GVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPR  149 (381)
T ss_pred             CCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCcc
Confidence            356889999999999999999999999999999999754

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=97.27  E-value=0.00067  Score=68.22  Aligned_cols=70  Identities=13%  Similarity=0.144  Sum_probs=49.1

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~-~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ..+.||++.|||.|.+|++++..|+ ..|++|..++|......  ...++....++++    .++++|+|+.+.|..
T Consensus       141 ~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~--~~~~~~~~~~l~e----ll~~sDvv~lh~plt  211 (323)
T PRK15409        141 TDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEA--EERFNARYCDLDT----LLQESDFVCIILPLT  211 (323)
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhh--HHhcCcEecCHHH----HHHhCCEEEEeCCCC
Confidence            4578999999999999999999997 88999999998743211  1233333223333    345678888877753

>PLN02494 adenosylhomocysteinase

Probab=97.24  E-value=0.00091  Score=69.78  Aligned_cols=90  Identities=22%  Similarity=0.229  Sum_probs=62.6

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|++++|+|.|.+|+.++..+..+|++|+++++++.++... ...+....++++    .+..+|++|.||..-    
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA-~~~G~~vv~leE----al~~ADVVI~tTGt~----  320 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQA-LMEGYQVLTLED----VVSEADIFVTTTGNK----  320 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHH-HhcCCeeccHHH----HHhhCCEEEECCCCc----
Confidence            45789999999999999999999999999999999998775432 223333333332    245689999877521    


Q ss_pred             CCCCCCCh---hcccCCcEEEEEec
Q 012866          379 TDRVPVSE---ETLRDYQLVFDAVY  400 (454)
Q Consensus       379 ~~~~~i~~---~~l~~~~~v~D~~y  400 (454)
                         ..+..   +.++++.+++.+..
T Consensus       321 ---~vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        321 ---DIIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             ---cchHHHHHhcCCCCCEEEEcCC
Confidence               11222   34566777777765

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.23  E-value=0.00064  Score=68.21  Aligned_cols=64  Identities=25%  Similarity=0.199  Sum_probs=46.4

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..+.||++.|+|.|.+|++++..|+..|++|..++|.... .      .....   ++++ .++++|+|+.+.|.
T Consensus       144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~-~------~~~~~---~l~e-ll~~sDiv~l~lPl  207 (317)
T PRK06487        144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP-A------RPDRL---PLDE-LLPQVDALTLHCPL  207 (317)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc-c------ccccc---CHHH-HHHhCCEEEECCCC
Confidence            3578999999999999999999999999999999986321 0      00111   2333 34567777777775

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.22  E-value=0.0006  Score=63.46  Aligned_cols=91  Identities=22%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK-SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~-~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      +++.|+|+|.+|.+++..+...|.+|.|.+|+.+++. .+++.++...... +..+ ..+.+|+||-|.|--..|.    
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~-~~~d-A~~~aDVVvLAVP~~a~~~----   75 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGG-SNED-AAALADVVVLAVPFEAIPD----   75 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccC-ChHH-HHhcCCEEEEeccHHHHHh----
Confidence            4689999999999999999999999999977666544 4455555443222 2222 3466899999998644332    


Q ss_pred             CCChhcc--cCCcEEEEEecCC
Q 012866          383 PVSEETL--RDYQLVFDAVYTP  402 (454)
Q Consensus       383 ~i~~~~l--~~~~~v~D~~y~P  402 (454)
                       +..+..  ..+++|+|.. +|
T Consensus        76 -v~~~l~~~~~~KIvID~t-np   95 (211)
T COG2085          76 -VLAELRDALGGKIVIDAT-NP   95 (211)
T ss_pred             -HHHHHHHHhCCeEEEecC-CC
Confidence             222221  2368999986 45

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.22  E-value=0.0074  Score=57.16  Aligned_cols=139  Identities=17%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH----------HHHHHH
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF----------ERAKSL  342 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~----------~~a~~l  342 (454)
                      +.|...+++..+.+.         +.++++++++|.|.|..|+.++..|.++|. .|.|.+.+.          +..+..
T Consensus         3 g~Gv~~~~~~~~~~~---------~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~   73 (217)
T cd05211           3 GYGVVVAMKAAMKHL---------GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYA   73 (217)
T ss_pred             hhHHHHHHHHHHHHc---------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHH
Confidence            567777777766522         246889999999999999999999999999 678888776          544433


Q ss_pred             HHHhcCCcccc-ccc--cccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCcee
Q 012866          343 ASDVMGAARPF-EDI--LNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV  419 (454)
Q Consensus       343 a~~~~~~~~~~-~~l--~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~  419 (454)
                      .+..+....+- +.+  .++...++|++|-|+.-+...   ..+  ...+ ..++|+.-.-+|....--+.-+++|..++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~---~~~--a~~l-~a~~V~e~AN~p~t~~a~~~L~~~Gi~v~  147 (217)
T cd05211          74 VALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVID---LEN--AKKL-KAKVVAEGANNPTTDEALRILHERGIVVA  147 (217)
T ss_pred             HhhCCccccCcccccCcccceeccccEEeeccccCccC---hhh--Hhhc-CccEEEeCCCCCCCHHHHHHHHHCCcEEE
Confidence            33322211111 001  111123689999888754321   111  1112 24678888777754333334456888777


Q ss_pred             ccHHHHHH
Q 012866          420 SGVEMFLR  427 (454)
Q Consensus       420 ~Gl~mlv~  427 (454)
                      +..-+-..
T Consensus       148 Pd~~~NaG  155 (217)
T cd05211         148 PDIVANAG  155 (217)
T ss_pred             ChHHhcCC
Confidence            77665433

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.22  E-value=0.00069  Score=65.08  Aligned_cols=70  Identities=14%  Similarity=0.169  Sum_probs=53.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHCC---C-eEEEEeC-CHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRG---A-RVVIFDI-DFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G---~-~v~i~nR-t~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      +.++.|||+|.+|++++..|.+.|   . +|++++| +.++++++++.++...  ..+..+ .+.++|+||.|+|...
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~DiViiavp~~~   78 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVST--TTDWKQ-HVTSVDTIVLAMPPSA   78 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEE--eCChHH-HHhcCCEEEEecCHHH
Confidence            467999999999999999998876   3 3888998 4788999988776432  123333 2457899999998654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=97.21  E-value=0.00064  Score=64.21  Aligned_cols=35  Identities=31%  Similarity=0.513  Sum_probs=32.9

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||+|..++..|+..|+ ++++++.+
T Consensus        26 L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         26 LKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             HhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            567899999999999999999999999 89999987

>PLN02712 arogenate dehydrogenase

Probab=97.20  E-value=0.00055  Score=75.27  Aligned_cols=118  Identities=17%  Similarity=0.097  Sum_probs=75.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      .+..++.|||.|.+|++++.+|.+.|.+|++++|+..+  +.+.+++...  ..+..+....++|+||-|+|.......-
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~--~~A~~~Gv~~--~~d~~e~~~~~aDvViLavP~~~~~~vl  125 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHS--LAARSLGVSF--FLDPHDLCERHPDVILLCTSIISTENVL  125 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHH--HHHHHcCCEE--eCCHHHHhhcCCCEEEEcCCHHHHHHHH
Confidence            34578999999999999999999999999999998554  3455665432  2222221224589999999965322110


Q ss_pred             CCCCChhcccCCcEEEEEecCCCCCHHHHHHHH---CCCceeccHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF  425 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~---~G~~~~~Gl~ml  425 (454)
                      . .+....++++.+++|+.-  .....++..++   .|+.++.+-.|+
T Consensus       126 ~-~l~~~~l~~g~iVvDv~S--vK~~~~~~l~~~l~~~~~~v~~HPMa  170 (667)
T PLN02712        126 K-SLPLQRLKRNTLFVDVLS--VKEFAKNLLLDYLPEDFDIICSHPMF  170 (667)
T ss_pred             H-hhhhhcCCCCeEEEECCC--CcHHHHHHHHHhcCCCCeEEeeCCcC
Confidence            0 111123567889999963  34444444443   355666666665

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=97.20  E-value=0.00071  Score=72.57  Aligned_cols=70  Identities=21%  Similarity=0.289  Sum_probs=50.8

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ..+.||++.|+|.|.+|+.++..|+..|++|..++|+.....  +..++....   ++.+ .++++|+|+.+.|..
T Consensus       136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~--~~~~g~~~~---~l~e-ll~~aDiV~l~lP~t  205 (526)
T PRK13581        136 VELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPER--AAQLGVELV---SLDE-LLARADFITLHTPLT  205 (526)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhH--HHhcCCEEE---cHHH-HHhhCCEEEEccCCC
Confidence            357899999999999999999999999999999999643221  223333222   3333 345688888888864

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.20  E-value=0.00055  Score=66.91  Aligned_cols=105  Identities=18%  Similarity=0.154  Sum_probs=72.1

Q ss_pred             eEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSR--GAR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~--G~~-v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      ++.|||.|.+|+.++.++.+.  +++ +.+++|+.++++++++.++...  +.++++ .+.+.|+|+.|++.....    
T Consensus         3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~--~~~~~e-ll~~~DvVvi~a~~~~~~----   75 (265)
T PRK13304          3 KIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKA--CLSIDE-LVEDVDLVVECASVNAVE----   75 (265)
T ss_pred             EEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCee--ECCHHH-HhcCCCEEEEcCChHHHH----
Confidence            689999999999999999876  454 7799999999999988776432  233433 235789999998754321    


Q ss_pred             CCCChhcccCCcEEEEEec----CC-CCCHHHHHHHHCCCc
Q 012866          382 VPVSEETLRDYQLVFDAVY----TP-RKTRLLKDAEAAGAI  417 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~y----~P-~~T~ll~~A~~~G~~  417 (454)
                       .+-...++.+.-++.+.-    .+ ....+.+.|++.|.+
T Consensus        76 -~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~  115 (265)
T PRK13304         76 -EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCK  115 (265)
T ss_pred             -HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCE
Confidence             122345555554555432    11 234777889999976

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.18  E-value=0.00073  Score=67.68  Aligned_cols=66  Identities=15%  Similarity=0.174  Sum_probs=47.8

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ..+.||++.|+|.|.+||+++..|+.+|++|..++|....      ....   .+.++++ .+.++|+|+.+.|..
T Consensus       143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~------~~~~---~~~~l~e-ll~~sDiv~l~~Plt  208 (314)
T PRK06932        143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGAS------VCRE---GYTPFEE-VLKQADIVTLHCPLT  208 (314)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCccc------cccc---ccCCHHH-HHHhCCEEEEcCCCC
Confidence            3578999999999999999999999999999999886421      0111   1223333 345678888888753

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=97.18  E-value=0.00076  Score=67.06  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=54.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..+++|++.|||.|.+|++++..|...|++|.+++|. .++.+.+...+....+++   + ..+++|+|+...|.
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~-~~s~~~A~~~G~~v~sl~---E-aak~ADVV~llLPd   81 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRP-GKSFEVAKADGFEVMSVS---E-AVRTAQVVQMLLPD   81 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECc-chhhHHHHHcCCEECCHH---H-HHhcCCEEEEeCCC
Confidence            3578999999999999999999999999999999986 455555555554433333   3 34578999988884

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.17  E-value=0.0011  Score=71.17  Aligned_cols=71  Identities=23%  Similarity=0.291  Sum_probs=51.1

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ..+.||++.|+|.|.+|++++..|+..|++|..++|.....  .+.+++....  +++.+ .+.++|+|+.+.|..
T Consensus       134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~--~~~~~g~~~~--~~l~e-ll~~aDvV~l~lPlt  204 (525)
T TIGR01327       134 TELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPE--RAEQLGVELV--DDLDE-LLARADFITVHTPLT  204 (525)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh--HHHhcCCEEc--CCHHH-HHhhCCEEEEccCCC
Confidence            45789999999999999999999999999999999853221  1233333221  23333 345789988888854

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.16  E-value=0.00079  Score=55.98  Aligned_cols=67  Identities=16%  Similarity=0.179  Sum_probs=44.9

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      .++++++|||+|+|..|..-+..|.+.|++|+|++++.+..+   +.+.   ..-.++++ .+.++++|+.||.
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~---~~i~---~~~~~~~~-~l~~~~lV~~at~   69 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE---GLIQ---LIRREFEE-DLDGADLVFAATD   69 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH---TSCE---EEESS-GG-GCTTESEEEE-SS
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh---hHHH---HHhhhHHH-HHhhheEEEecCC
Confidence            357899999999999999999999999999999999972212   1111   01112222 3567899998885

>PLN02306 hydroxypyruvate reductase

Probab=97.16  E-value=0.00092  Score=68.75  Aligned_cols=75  Identities=13%  Similarity=0.137  Sum_probs=51.3

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHHhcC----------CccccccccccCCCCccE
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFERA-KSLASDVMG----------AARPFEDILNFQPEKGAI  366 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~-~~G~~v~i~nRt~~~a-~~la~~~~~----------~~~~~~~l~~~~~~~~di  366 (454)
                      ..+.||++.|||.|.+|++++..|. .+|++|..++|+.... +.....++.          ......++++ .+.++|+
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~e-ll~~sDi  239 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEE-VLREADV  239 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHH-HHhhCCE
Confidence            4578999999999999999999985 8899999999976421 211122221          0001124444 4567899


Q ss_pred             EEECCCCC
Q 012866          367 LANATPLG  374 (454)
Q Consensus       367 vInat~~g  374 (454)
                      |+.++|..
T Consensus       240 V~lh~Plt  247 (386)
T PLN02306        240 ISLHPVLD  247 (386)
T ss_pred             EEEeCCCC
Confidence            99988863

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=97.15  E-value=0.0013  Score=60.48  Aligned_cols=39  Identities=26%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      +|.|||+|-||+.++..++..|++|++++++++..++..
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~   39 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERAR   39 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence            588999999999999999999999999999998765543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.14  E-value=0.0011  Score=68.36  Aligned_cols=92  Identities=27%  Similarity=0.299  Sum_probs=65.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|++|+|+|.|.+|+.++..++.+|++|+++++++.++.... ..+....+.++    .+..+|++|.+|+.   + 
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~-~~G~~v~~lee----al~~aDVVItaTG~---~-  261 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAA-MDGFRVMTMEE----AAKIGDIFITATGN---K-  261 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHH-hcCCEeCCHHH----HHhcCCEEEECCCC---H-
Confidence            457899999999999999999999999999999999998864433 33443333332    24578999998752   1 


Q ss_pred             CCCCCCCh---hcccCCcEEEEEecCC
Q 012866          379 TDRVPVSE---ETLRDYQLVFDAVYTP  402 (454)
Q Consensus       379 ~~~~~i~~---~~l~~~~~v~D~~y~P  402 (454)
                         ..+..   ..++++.+++.+...+
T Consensus       262 ---~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       262 ---DVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             ---HHHHHHHHhcCCCCcEEEEECCCC
Confidence               12333   3456777777666544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02712 arogenate dehydrogenase

Probab=97.13  E-value=0.00038  Score=76.51  Aligned_cols=119  Identities=14%  Similarity=0.066  Sum_probs=73.5

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..++++++.|||.|.+|++++.+|.+.|.+|++++|+...  +.+.+++...  ..++.+.....+|+||-|+|......
T Consensus       365 ~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~--~~a~~~Gv~~--~~~~~el~~~~aDvVILavP~~~~~~  440 (667)
T PLN02712        365 NDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS--DEAQKLGVSY--FSDADDLCEEHPEVILLCTSILSTEK  440 (667)
T ss_pred             CCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH--HHHHHcCCeE--eCCHHHHHhcCCCEEEECCChHHHHH
Confidence            3457789999999999999999999999999999999643  2344555421  22332211124799999999643221


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHH---HCCCceeccHHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE---AAGAIIVSGVEM  424 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~---~~G~~~~~Gl~m  424 (454)
                      .-. .+....++++.+++|+.-..  +..++.++   ..|..++.+-.|
T Consensus       441 vi~-~l~~~~lk~g~ivvDv~SvK--~~~~~~~~~~l~~~~~~v~~HPm  486 (667)
T PLN02712        441 VLK-SLPFQRLKRSTLFVDVLSVK--EFPRNLFLQHLPQDFDILCTHPM  486 (667)
T ss_pred             HHH-HHHHhcCCCCcEEEECCCcc--HHHHHHHHHhccCCCceEeeCCC
Confidence            000 01112356788999997543  22334443   345555533333

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.13  E-value=0.00065  Score=67.17  Aligned_cols=107  Identities=21%  Similarity=0.244  Sum_probs=71.1

Q ss_pred             EEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCC-h
Q 012866          308 LAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS-E  386 (454)
Q Consensus       308 ViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~-~  386 (454)
                      |||.|-+|.+++..|.+.|.+|++|||+.++.+++.+. +...  .++..+ ...++|+||-+.|....  ....... .
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~--~~s~~~-~~~~advVil~vp~~~~--~~~v~~g~~   74 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAA-GAQA--AASPAE-AAEGADRVITMLPAGQH--VISVYSGDE   74 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEeCCChHH--HHHHHcCcc
Confidence            58999999999999999999999999999998887653 3221  122222 34578999999985321  0110000 1


Q ss_pred             ---hcccCCcEEEEEecCCC-CCH-HHHHHHHCCCceec
Q 012866          387 ---ETLRDYQLVFDAVYTPR-KTR-LLKDAEAAGAIIVS  420 (454)
Q Consensus       387 ---~~l~~~~~v~D~~y~P~-~T~-ll~~A~~~G~~~~~  420 (454)
                         ..+.++.+++|+..... .+. +-+.++++|+.+++
T Consensus        75 ~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd  113 (288)
T TIGR01692        75 GILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD  113 (288)
T ss_pred             hHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence               23467789999987644 333 33555667876665

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=97.13  E-value=0.0008  Score=68.08  Aligned_cols=36  Identities=33%  Similarity=0.454  Sum_probs=33.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~  336 (454)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus        22 L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         22 LREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            567899999999999999999999999 999999873

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.10  E-value=0.0014  Score=69.15  Aligned_cols=111  Identities=17%  Similarity=0.267  Sum_probs=71.7

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCCcccccccccc--CCCCccEEEECCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV---MGAARPFEDILNF--QPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~---~~~~~~~~~l~~~--~~~~~divInat~~g~~p~~  379 (454)
                      ++.|||.|-||.+++..|++.|++|+++||+.++++++.+..   +.......+++++  .+.++|+||-+.+.+-.  +
T Consensus         3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~--v   80 (470)
T PTZ00142          3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA--V   80 (470)
T ss_pred             EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHH--H
Confidence            589999999999999999999999999999999999987642   2111112233221  23357877766554321  0


Q ss_pred             CCCCCC--hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCce
Q 012866          380 DRVPVS--EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAII  418 (454)
Q Consensus       380 ~~~~i~--~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~  418 (454)
                      +. .+.  ...+.++.+++|..-. |.+| ...++++++|..+
T Consensus        81 ~~-vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~f  122 (470)
T PTZ00142         81 DE-TIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILY  122 (470)
T ss_pred             HH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeE
Confidence            11 111  1235678999999764 4443 3445666677644

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.09  E-value=0.00083  Score=66.61  Aligned_cols=109  Identities=18%  Similarity=0.224  Sum_probs=70.3

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      ++.+||.|-||.+++..|.+.|++|+++||++. ++++++ .+...  .....+ ...++|+||.+.|-.  +.......
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~-~g~~~--~~s~~~-~~~~advVi~~v~~~--~~v~~v~~   74 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLS-LGAVS--VETARQ-VTEASDIIFIMVPDT--PQVEEVLF   74 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHH-cCCee--cCCHHH-HHhcCCEEEEeCCCh--HHHHHHHc
Confidence            588999999999999999999999999999974 555543 33322  122222 235789999988743  11111111


Q ss_pred             Ch----hcccCCcEEEEEecC-CCCCH-HHHHHHHCCCceec
Q 012866          385 SE----ETLRDYQLVFDAVYT-PRKTR-LLKDAEAAGAIIVS  420 (454)
Q Consensus       385 ~~----~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~~~  420 (454)
                      ..    ..+.++.+++|+.-. |..+. +-+.++++|+.+++
T Consensus        75 ~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd  116 (292)
T PRK15059         75 GENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD  116 (292)
T ss_pred             CCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            11    124567899999865 43333 45666777876554

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=97.08  E-value=0.00078  Score=68.65  Aligned_cols=71  Identities=18%  Similarity=0.329  Sum_probs=51.7

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhcC--Cccc------
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF-------------------ERAKSLASDVMG--AARP------  352 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~-------------------~~a~~la~~~~~--~~~~------  352 (454)
                      +++++|+|+|+||.|..++..|+..|+ +++|++++.                   .|++.+++.+..  ..+.      
T Consensus        26 L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~~~  105 (355)
T PRK05597         26 LFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVSVR  105 (355)
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEEEe
Confidence            567899999999999999999999999 999999764                   466666665532  0111      


Q ss_pred             ---cccccccCCCCccEEEECCC
Q 012866          353 ---FEDILNFQPEKGAILANATP  372 (454)
Q Consensus       353 ---~~~l~~~~~~~~divInat~  372 (454)
                         .++..+ .+.++|+||+|+-
T Consensus       106 ~i~~~~~~~-~~~~~DvVvd~~d  127 (355)
T PRK05597        106 RLTWSNALD-ELRDADVILDGSD  127 (355)
T ss_pred             ecCHHHHHH-HHhCCCEEEECCC
Confidence               111122 3567999999983

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=97.08  E-value=0.013  Score=61.53  Aligned_cols=189  Identities=16%  Similarity=0.185  Sum_probs=121.0

Q ss_pred             EecCCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCchH-----HHHhhhhhcCH
Q 012866          178 LISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYKE-----AVMKFCDEVHP  247 (454)
Q Consensus       178 liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K~-----~v~~~~d~~~~  247 (454)
                      =+|+--..+.--.|-.++.++.|+++.|.+++-+    ++-..++.| .++...|+.|-.|+-.     .|...+|- ..
T Consensus        41 QVGnR~DSnvYVrmKlKAA~e~Gid~~~iklPetiTe~ell~~I~~lNeD~tvHGiiVQLPLp~hide~~Vt~aI~p-eK  119 (935)
T KOG4230|consen   41 QVGNREDSNVYVRMKLKAAKEIGIDAKHIKLPETITEGELLREIKALNEDPTVHGIIVQLPLPAHIDEDTVTEAIDP-EK  119 (935)
T ss_pred             EecCcCCcceeehhhhhHHHhcCCceEEecCcccccHHHHHHHHHhccCCCccceEEEeccCccccchhhHhhccCc-cc
Confidence            3465545555556788999999999999998753    444445555 4677999999999752     11111110 00


Q ss_pred             hHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHHHHHHHCC
Q 012866          248 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALAFGAKSRG  326 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~~~L~~~G  326 (454)
                      .+.-.+..|.=.-.+.+|+-+=+-.--.|++..|++.             +..+.|++++|+|-. -.|+.+++-|....
T Consensus       120 DVDGf~~~NaG~Lak~~g~p~f~PCTPkGcmeLlk~a-------------~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~N  186 (935)
T KOG4230|consen  120 DVDGFTRINAGRLAKGEGQPTFIPCTPKGCMELLKEA-------------GVFVAGKNAVVLGRSKIVGSPIAALLLWAN  186 (935)
T ss_pred             ccccccccchhhhhccCCCceeeccChHHHHHHHHHc-------------CCccccceeEEEecccccCChHHHHHHhcC
Confidence            0111223333110001444445556678888876642             367899999999955 66999999888888


Q ss_pred             CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE--ecCCCC
Q 012866          327 ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA--VYTPRK  404 (454)
Q Consensus       327 ~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~--~y~P~~  404 (454)
                      +.|+++--.   .+.+++               ...++||||.|+..   |+    .+-.+|++++.+|+|+  +|.|..
T Consensus       187 aTVTiCHSK---T~~lae---------------~v~~ADIvIvAiG~---Pe----fVKgdWiKpGavVIDvGINyvpD~  241 (935)
T KOG4230|consen  187 ATVTICHSK---TRNLAE---------------KVSRADIVIVAIGQ---PE----FVKGDWIKPGAVVIDVGINYVPDP  241 (935)
T ss_pred             ceEEEecCC---CccHHH---------------HhccCCEEEEEcCC---cc----eeecccccCCcEEEEccccccCCC
Confidence            899987532   222222               34568999988853   22    3567899999999997  565654


Q ss_pred             C
Q 012866          405 T  405 (454)
Q Consensus       405 T  405 (454)
                      +
T Consensus       242 ~  242 (935)
T KOG4230|consen  242 S  242 (935)
T ss_pred             C
Confidence            4

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=97.07  E-value=0.0012  Score=60.45  Aligned_cols=32  Identities=31%  Similarity=0.492  Sum_probs=30.1

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~  336 (454)
                      +|+|+|+||+|..++..|+..|+ ++++++++.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            48999999999999999999999 899999886

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.07  E-value=0.0012  Score=66.55  Aligned_cols=113  Identities=24%  Similarity=0.152  Sum_probs=72.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-------cCC----ccccccccccCCCCccEEEECCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-------MGA----ARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-------~~~----~~~~~~l~~~~~~~~divInat~  372 (454)
                      .++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+..       +..    ....+++.+ ..+.+|+||-++|
T Consensus         5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e-~~~~aD~Vi~~v~   83 (328)
T PRK14618          5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEE-ALAGADFAVVAVP   83 (328)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHH-HHcCCCEEEEECc
Confidence            4799999999999999999999999999999999988887542       110    111223323 3467899999998


Q ss_pred             CCCCCCCCCCCCChhcccCCcEEEEEecC--CCC--CHHHH-HHHH---CCCceeccHH
Q 012866          373 LGMHPNTDRVPVSEETLRDYQLVFDAVYT--PRK--TRLLK-DAEA---AGAIIVSGVE  423 (454)
Q Consensus       373 ~g~~p~~~~~~i~~~~l~~~~~v~D~~y~--P~~--T~ll~-~A~~---~G~~~~~Gl~  423 (454)
                      .....   . .+  +.+++..+++++.-.  |..  +..+. ...+   .|+.++.|-.
T Consensus        84 ~~~~~---~-v~--~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~  136 (328)
T PRK14618         84 SKALR---E-TL--AGLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPN  136 (328)
T ss_pred             hHHHH---H-HH--HhcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECcc
Confidence            54210   0 01  234566788888652  332  22333 3333   5665665544

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.06  E-value=0.0011  Score=61.96  Aligned_cols=35  Identities=26%  Similarity=0.560  Sum_probs=33.1

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||+|..++..|+..|+ +|++++++
T Consensus        19 L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        19 LEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            567899999999999999999999999 89999988

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.05  E-value=0.0012  Score=64.81  Aligned_cols=119  Identities=8%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA----RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~----~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .++.+||+|-||.+++..|.+.|.    +|++++|+.++++.++++++...  ..+..+ ...++|+||-|++...... 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~--~~~~~e-~~~~aDiIiLavkP~~~~~-   78 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITI--TTNNNE-VANSADILILSIKPDLYSS-   78 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEE--eCCcHH-HHhhCCEEEEEeChHHHHH-
Confidence            469999999999999999999873    69999999999999887776432  222222 2457899999987532211 


Q ss_pred             CCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHHHCCC---ceeccHHHHHHHHH
Q 012866          380 DRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGA---IIVSGVEMFLRQAI  430 (454)
Q Consensus       380 ~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~---~~~~Gl~mlv~Qa~  430 (454)
                         .+..  ..++++.+++|+.-. ....-+++.-...+   ++++-....+.++.
T Consensus        79 ---vl~~l~~~~~~~~lvISi~AG-i~i~~l~~~l~~~~~vvR~MPN~~~~vg~g~  130 (272)
T PRK12491         79 ---VINQIKDQIKNDVIVVTIAAG-KSIKSTENEFDRKLKVIRVMPNTPVLVGEGM  130 (272)
T ss_pred             ---HHHHHHHhhcCCcEEEEeCCC-CcHHHHHHhcCCCCcEEEECCChHHHHcCce
Confidence               1111  124566788898754 23333443322222   35666666666554

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.05  E-value=0.0011  Score=64.69  Aligned_cols=74  Identities=24%  Similarity=0.478  Sum_probs=56.5

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc----cccc---cc-------cccCC
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA----RPFE---DI-------LNFQP  361 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~----~~~~---~l-------~~~~~  361 (454)
                      .++.|+.|||.|+| |.||+++..++++|+++.+++.+.+-.++.++++..  .+    +++.   ++       ++ ..
T Consensus        34 k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~-e~  112 (300)
T KOG1201|consen   34 KSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKK-EV  112 (300)
T ss_pred             hhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHH-hc
Confidence            46789999999988 999999999999999999999998887777766642  11    2322   22       22 35


Q ss_pred             CCccEEEECCCC
Q 012866          362 EKGAILANATPL  373 (454)
Q Consensus       362 ~~~divInat~~  373 (454)
                      ...|++||...+
T Consensus       113 G~V~ILVNNAGI  124 (300)
T KOG1201|consen  113 GDVDILVNNAGI  124 (300)
T ss_pred             CCceEEEecccc
Confidence            678999997654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.04  E-value=0.0013  Score=61.88  Aligned_cols=74  Identities=19%  Similarity=0.078  Sum_probs=50.9

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .+++|++|+|+|+|.+|..-+..|.+.|++|+|++.+.. ..++++++....++. .+.....+.++++||-||..
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~-~~~~~~dl~~~~lVi~at~d   79 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLA-RCFDADILEGAFLVIAATDD   79 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEe-CCCCHHHhCCcEEEEECCCC
Confidence            467899999999999999999999999999999998764 445555442211110 01111024567888888754

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.04  E-value=0.00073  Score=68.99  Aligned_cols=117  Identities=23%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccc--cccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP--FEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~--~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      +++.|||.|-+|.+++.+|.+.|.++.+++++.++.+ ++...+....+  ..++.+ ...++|+||-|+|.......- 
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~-~~~a~~~~~~~~~~~~~~~-~~~~aDlVilavP~~~~~~vl-   77 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQ-LARALGFGVIDELAADLQR-AAAEADLIVLAVPVDATAALL-   77 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHH-HHHHhcCCCCcccccCHHH-HhcCCCEEEEeCCHHHHHHHH-
Confidence            3689999999999999999999998889998876543 32222222111  123333 356799999999975321100 


Q ss_pred             CCCChhcccCCcEEEEEecCCCCCHHHHHHHH---CCCceeccHHHH
Q 012866          382 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA---AGAIIVSGVEMF  425 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~---~G~~~~~Gl~ml  425 (454)
                      ..+....++++.++.|+.-.+  ...++.+++   .+.++++|-.|.
T Consensus        78 ~~l~~~~l~~~~ivtDv~SvK--~~i~~~~~~~~~~~~~~ig~HPMa  122 (359)
T PRK06545         78 AELADLELKPGVIVTDVGSVK--GAILAEAEALLGDLIRFVGGHPMA  122 (359)
T ss_pred             HHHhhcCCCCCcEEEeCcccc--HHHHHHHHHhcCCCCeEEeeCCcC
Confidence            001111256778999987653  334455555   356677776664

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.03  E-value=0.0011  Score=65.49  Aligned_cols=41  Identities=29%  Similarity=0.442  Sum_probs=37.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~  344 (454)
                      ++|.|||+|-+|++++..|++.|.+|++++|++++.+++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~   42 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQ   42 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHH
Confidence            47999999999999999999999999999999998887654

>PRK05872 short chain dehydrogenase; Provisional

Probab=97.00  E-value=0.0024  Score=63.14  Aligned_cols=75  Identities=24%  Similarity=0.396  Sum_probs=56.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC--c----ccccc---cccc------CCC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA--A----RPFED---ILNF------QPE  362 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~--~----~~~~~---l~~~------~~~  362 (454)
                      .++++++++|.|+ ||+|++++..|.+.|++|++++|+.+++++++++++..  .    +++.+   +...      ...
T Consensus         5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (296)
T PRK05872          5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFG   84 (296)
T ss_pred             CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            3578999999996 79999999999999999999999999999998887521  1    22222   1110      124


Q ss_pred             CccEEEECCCC
Q 012866          363 KGAILANATPL  373 (454)
Q Consensus       363 ~~divInat~~  373 (454)
                      ..|+|||+...
T Consensus        85 ~id~vI~nAG~   95 (296)
T PRK05872         85 GIDVVVANAGI   95 (296)
T ss_pred             CCCEEEECCCc
Confidence            57999998765

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.00  E-value=0.00065  Score=58.73  Aligned_cols=107  Identities=23%  Similarity=0.227  Sum_probs=63.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeE-EEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARV-VIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v-~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      .-++-|||+|.+|.+++.+|.+.|++| -+++|+.+.++.++..++...  ..++.+ ...++|+++-|+|-..-.    
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~--~~~~~~-~~~~aDlv~iavpDdaI~----   82 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGA--ILDLEE-ILRDADLVFIAVPDDAIA----   82 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-------TTG-GGCC-SEEEE-S-CCHHH----
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCccccccccccccccc--cccccc-ccccCCEEEEEechHHHH----
Confidence            357999999999999999999999965 567999999998888776532  122323 345789999999842111    


Q ss_pred             CCCChh-----cccCCcEEEEEecCCCCCHHHHHHHHCCCce
Q 012866          382 VPVSEE-----TLRDYQLVFDAVYTPRKTRLLKDAEAAGAII  418 (454)
Q Consensus       382 ~~i~~~-----~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~  418 (454)
                       .+..+     .+.++.+|+-.+= -.....|+-++++|+.+
T Consensus        83 -~va~~La~~~~~~~g~iVvHtSG-a~~~~vL~p~~~~Ga~~  122 (127)
T PF10727_consen   83 -EVAEQLAQYGAWRPGQIVVHTSG-ALGSDVLAPARERGAIV  122 (127)
T ss_dssp             -HHHHHHHCC--S-TT-EEEES-S-S--GGGGHHHHHTT-EE
T ss_pred             -HHHHHHHHhccCCCCcEEEECCC-CChHHhhhhHHHCCCeE
Confidence             11111     1346777776653 23566778889999865

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK05866 short chain dehydrogenase; Provisional

Probab=96.99  E-value=0.0018  Score=64.10  Aligned_cols=48  Identities=31%  Similarity=0.397  Sum_probs=43.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+.+++++|+|+ ||.|++++..|++.|++|++++|+.++++++.+++
T Consensus        36 ~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l   84 (293)
T PRK05866         36 VDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRI   84 (293)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4567899999996 79999999999999999999999999988887765

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=96.99  E-value=0.0012  Score=63.44  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=32.1

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||.|..++..|+..|+ ++++++++
T Consensus        22 L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        22 LKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             HhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            457899999999999999999999999 99998875

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=96.99  E-value=0.0014  Score=65.50  Aligned_cols=120  Identities=18%  Similarity=0.289  Sum_probs=85.3

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.||+|.|+|.|.+|++++..|...|+.|.-.+|+..+.+.. .++.....+++++    +.++|+||-+.|..-. 
T Consensus       157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~-~~~~~~~~d~~~~----~~~sD~ivv~~pLt~~-  230 (336)
T KOG0069|consen  157 GYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEA-YEYYAEFVDIEEL----LANSDVIVVNCPLTKE-  230 (336)
T ss_pred             cccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhH-HHhcccccCHHHH----HhhCCEEEEecCCCHH-
Confidence            356789999999999999999999999997788888887665544 3334444444443    4678999999987532 


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                       + ...+..+   .++++.+++.+.-.+- +-.-+.+|-+.|-..--|++.+
T Consensus       231 -T-~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf  280 (336)
T KOG0069|consen  231 -T-RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVF  280 (336)
T ss_pred             -H-HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCccccccccc
Confidence             1 1235544   3567778888776655 4555677777787777777765

>PRK07060 short chain dehydrogenase; Provisional

Probab=96.97  E-value=0.0031  Score=59.95  Aligned_cols=76  Identities=26%  Similarity=0.277  Sum_probs=56.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc--CCCCccEEEEC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF--QPEKGAILANA  370 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~--~~~~~divIna  370 (454)
                      .++++++++|.|+ |+.|+.++..|.+.|++|++++|+.++++++++..+...  .++.+   +...  .....|+||++
T Consensus         5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~d~vi~~   84 (245)
T PRK07060          5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAALDRLAGETGCEPLRLDVGDDAAIRAALAAAGAFDGLVNC   84 (245)
T ss_pred             cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeEEEecCCCHHHHHHHHHHhCCCCEEEEC
Confidence            4567899999997 799999999999999999999999999888877665432  12222   1110  12357999998


Q ss_pred             CCCC
Q 012866          371 TPLG  374 (454)
Q Consensus       371 t~~g  374 (454)
                      ....
T Consensus        85 ag~~   88 (245)
T PRK07060         85 AGIA   88 (245)
T ss_pred             CCCC
Confidence            8654

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.96  E-value=0.0017  Score=63.09  Aligned_cols=67  Identities=19%  Similarity=0.218  Sum_probs=53.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC----CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G----~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .++.+||+|.||+|++..|.+.|    .+|++.||+.++++.++++|+...  ..+..+ ...++|+|+-|...
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~--~~~~~~-~~~~advv~LavKP   72 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVT--TTDNQE-AVEEADVVFLAVKP   72 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcc--cCcHHH-HHhhCCEEEEEeCh
Confidence            46899999999999999999999    389999999999999999998763  222222 34567888877754

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=96.95  E-value=0.0013  Score=67.31  Aligned_cols=71  Identities=15%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcC--Cccccc----
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMG--AARPFE----  354 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt-------------------~~~a~~la~~~~~--~~~~~~----  354 (454)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++++                   ..|++.+++.+..  ..+.++    
T Consensus        39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~  118 (370)
T PRK05600         39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNALRE  118 (370)
T ss_pred             hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEeee
Confidence            567899999999999999999999999 99999976                   3466666665532  111111    


Q ss_pred             -----cccccCCCCccEEEECCC
Q 012866          355 -----DILNFQPEKGAILANATP  372 (454)
Q Consensus       355 -----~l~~~~~~~~divInat~  372 (454)
                           .+.+ .+.++|+||+|+-
T Consensus       119 ~i~~~~~~~-~~~~~DlVid~~D  140 (370)
T PRK05600        119 RLTAENAVE-LLNGVDLVLDGSD  140 (370)
T ss_pred             ecCHHHHHH-HHhCCCEEEECCC
Confidence                 1122 3567999999884

>PRK08265 short chain dehydrogenase; Provisional

Probab=96.93  E-value=0.003  Score=61.13  Aligned_cols=73  Identities=30%  Similarity=0.354  Sum_probs=54.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.++++++++...    .++.+   +.+.      .....|+
T Consensus         4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id~   83 (261)
T PRK08265          4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASLGERARFIATDITDDAAIERAVATVVARFGRVDI   83 (261)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            56899999996 799999999999999999999999998888888765321    12221   1110      1245799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        84 lv~~ag~   90 (261)
T PRK08265         84 LVNLACT   90 (261)
T ss_pred             EEECCCC
Confidence            9998653

>PRK06139 short chain dehydrogenase; Provisional

Probab=96.92  E-value=0.0033  Score=63.41  Aligned_cols=75  Identities=27%  Similarity=0.367  Sum_probs=55.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CCCC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QPEK  363 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~  363 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|+++.|+.++.+++.+++.   ...    .++.+   +..+      ....
T Consensus         5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~   84 (330)
T PRK06139          5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGR   84 (330)
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence            56899999997 699999999999999999999999999888876652   221    12221   1110      1246


Q ss_pred             ccEEEECCCCCC
Q 012866          364 GAILANATPLGM  375 (454)
Q Consensus       364 ~divInat~~g~  375 (454)
                      .|++||+...+.
T Consensus        85 iD~lVnnAG~~~   96 (330)
T PRK06139         85 IDVWVNNVGVGA   96 (330)
T ss_pred             CCEEEECCCcCC
Confidence            799999886543

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.92  E-value=0.0053  Score=64.82  Aligned_cols=95  Identities=18%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             CCCceEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       301 ~~~k~vlViGaGG~ara-i~~~L~~~G~~v~i~nRt~~~-a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      .++++++|+|.|++|++ ++..|.++|++|++.++.... .++|. +.+..... ..-.+ .+.++|+||-  |.|.   
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~-~~gi~~~~-~~~~~-~~~~~d~vv~--spgi---   76 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLL-ELGAIIFI-GHDAE-NIKDADVVVY--SSAI---   76 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHH-HCCCEEeC-CCCHH-HCCCCCEEEE--CCCC---
Confidence            45789999999999999 699999999999999975432 22221 11211100 00000 1223444442  1111   


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                                             |...|.+++|+++|++++.-.+++-
T Consensus        77 -----------------------~~~~~~~~~a~~~~i~i~~~~e~~~  101 (461)
T PRK00421         77 -----------------------PDDNPELVAARELGIPVVRRAEMLA  101 (461)
T ss_pred             -----------------------CCCCHHHHHHHHCCCcEEeHHHHHH
Confidence                                   3356778999999999988888763

>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.91  E-value=0.0033  Score=62.91  Aligned_cols=79  Identities=23%  Similarity=0.292  Sum_probs=59.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC---------ccccccccc-------c--
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA---------ARPFEDILN-------F--  359 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~---------~~~~~~l~~-------~--  359 (454)
                      .++.++.++|.|+ .|+|++++..|+.+|++|++.+|+.+++++.++.+...         .+++.++.+       +  
T Consensus        31 ~~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~  110 (314)
T KOG1208|consen   31 IDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKK  110 (314)
T ss_pred             ccCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHh
Confidence            5677899999996 69999999999999999999999999999998887631         123322211       0  


Q ss_pred             CCCCccEEEECCCCCCCC
Q 012866          360 QPEKGAILANATPLGMHP  377 (454)
Q Consensus       360 ~~~~~divInat~~g~~p  377 (454)
                      ....-|++||...+...|
T Consensus       111 ~~~~ldvLInNAGV~~~~  128 (314)
T KOG1208|consen  111 KEGPLDVLINNAGVMAPP  128 (314)
T ss_pred             cCCCccEEEeCcccccCC
Confidence            234679999977665444

>PRK08223 hypothetical protein; Validated

Probab=96.90  E-value=0.0017  Score=63.72  Aligned_cols=35  Identities=29%  Similarity=0.433  Sum_probs=32.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        25 L~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D   60 (287)
T PRK08223         25 LRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD   60 (287)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            567899999999999999999999999 99998865

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.87  E-value=0.0027  Score=62.70  Aligned_cols=40  Identities=33%  Similarity=0.451  Sum_probs=35.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      ++|.|||+|-+|.+++..|+..|.+|++++++.++.++..
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~   43 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAK   43 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHH
Confidence            5799999999999999999999999999999987665543

>PRK06196 oxidoreductase; Provisional

Probab=96.87  E-value=0.0056  Score=61.05  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=55.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccccc---cc------CCCCcc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFEDIL---NF------QPEKGA  365 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~~~l~---~~------~~~~~d  365 (454)
                      ..+++|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++++++.. ..  .++.+..   .+      .....|
T Consensus        22 ~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~~~~~~~~~~~~iD  101 (315)
T PRK06196         22 HDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGIDGVEVVMLDLADLESVRAFAERFLDSGRRID  101 (315)
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhhCeEEEccCCCHHHHHHHHHHHHhcCCCCC
Confidence            3467899999997 7999999999999999999999999998887766531 11  2222211   10      124679


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      +|||+....
T Consensus       102 ~li~nAg~~  110 (315)
T PRK06196        102 ILINNAGVM  110 (315)
T ss_pred             EEEECCCCC
Confidence            999988653

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.87  E-value=0.0052  Score=54.17  Aligned_cols=72  Identities=24%  Similarity=0.341  Sum_probs=54.0

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc--------cccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~~~~~~divInat~~  373 (454)
                      ||.|+|+ |..|.++++.|...+.  +|.+++++.++++..+.++....        +...+. + ...++|+||.+...
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~-~-~~~~aDivvitag~   79 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDY-E-ALKDADIVVITAGV   79 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSG-G-GGTTESEEEETTST
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccc-c-ccccccEEEEeccc
Confidence            6899999 9999999999999886  79999999999888877764210        111122 2 35789999998866


Q ss_pred             CCCCC
Q 012866          374 GMHPN  378 (454)
Q Consensus       374 g~~p~  378 (454)
                      ...|.
T Consensus        80 ~~~~g   84 (141)
T PF00056_consen   80 PRKPG   84 (141)
T ss_dssp             SSSTT
T ss_pred             ccccc
Confidence            44443

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.86  E-value=0.0053  Score=64.75  Aligned_cols=36  Identities=22%  Similarity=0.242  Sum_probs=33.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +.+++++|+|.|++|++++..|.+.|++|+++++..
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            457899999999999999999999999999999864

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=96.86  E-value=0.0023  Score=68.51  Aligned_cols=72  Identities=21%  Similarity=0.122  Sum_probs=53.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--------------Cc--ccccc---ccccC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--------------AA--RPFED---ILNFQ  360 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--------------~~--~~~~~---l~~~~  360 (454)
                      .+|+.++|+|+ |++|++++..|.+.|++|+++.|+.++++.+.+.+..              ..  .++.+   +.+ .
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~-a  156 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGP-A  156 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHH-H
Confidence            35789999996 8999999999999999999999999998887654311              01  12222   222 3


Q ss_pred             CCCccEEEECCCC
Q 012866          361 PEKGAILANATPL  373 (454)
Q Consensus       361 ~~~~divInat~~  373 (454)
                      +.+.|+|||+...
T Consensus       157 LggiDiVVn~AG~  169 (576)
T PLN03209        157 LGNASVVICCIGA  169 (576)
T ss_pred             hcCCCEEEEcccc
Confidence            5678999998654

>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional

Probab=96.85  E-value=0.0034  Score=60.64  Aligned_cols=73  Identities=22%  Similarity=0.253  Sum_probs=54.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +++|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++.++++...    .++.+   +..+      .....|+
T Consensus         4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   83 (263)
T PRK06200          4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEKLASLRQRFGDHVLVVEGDVTSYADNQRAVDQTVDAFGKLDC   83 (263)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            56889999996 699999999999999999999999999998887765321    12211   1110      1246799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        84 li~~ag~   90 (263)
T PRK06200         84 FVGNAGI   90 (263)
T ss_pred             EEECCCC
Confidence            9998764

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=96.85  E-value=0.0022  Score=64.14  Aligned_cols=90  Identities=21%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-C----------ccccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-A----------ARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~----------~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ++.|||+|.+|.+++..|++.|.+|++++|+.++++++.+.... .          .....+..+ ...++|+||-|++.
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~v~~   81 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAE-ALADADLILVAVPS   81 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHH-HHhCCCEEEEeCCH
Confidence            68999999999999999999999999999999998888764210 0          001112222 24578999999985


Q ss_pred             CCCCCCCCCCCC--hhcccCCcEEEEEe
Q 012866          374 GMHPNTDRVPVS--EETLRDYQLVFDAV  399 (454)
Q Consensus       374 g~~p~~~~~~i~--~~~l~~~~~v~D~~  399 (454)
                      ....   . .+.  ...+.++.+++++.
T Consensus        82 ~~~~---~-v~~~l~~~~~~~~~vi~~~  105 (325)
T PRK00094         82 QALR---E-VLKQLKPLLPPDAPIVWAT  105 (325)
T ss_pred             HHHH---H-HHHHHHhhcCCCCEEEEEe
Confidence            2111   0 011  11345677888885

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.85  E-value=0.0023  Score=60.63  Aligned_cols=91  Identities=21%  Similarity=0.315  Sum_probs=59.8

Q ss_pred             eEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----Cc----cccccccccCCCCccEEEECCCCCC
Q 012866          305 MFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----AA----RPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       305 ~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~~----~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ++.||| +|.+|.+++..|.+.|.+|++++|+.++++.+++.+..    ..    ....+..+ ....+|+||-|+|...
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~e-a~~~aDvVilavp~~~   80 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAE-AAKRADVVILAVPWDH   80 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHH-HHhcCCEEEEECCHHH
Confidence            589997 89999999999999999999999999999888765311    00    01111122 3457899999998653


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEe
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      .+..-. .+. ..+. +.+|+|+.
T Consensus        81 ~~~~l~-~l~-~~l~-~~vvI~~~  101 (219)
T TIGR01915        81 VLKTLE-SLR-DELS-GKLVISPV  101 (219)
T ss_pred             HHHHHH-HHH-Hhcc-CCEEEEec
Confidence            321000 011 1233 37888875

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK08507 prephenate dehydrogenase; Validated

Probab=96.84  E-value=0.0016  Score=63.90  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=71.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      ++.|||.|.+|.+++..|.+.|.  +|++++|+.++++.+. ..+... ...+..+  ..++|+||-|+|.......-. 
T Consensus         2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~-~~g~~~-~~~~~~~--~~~aD~Vilavp~~~~~~~~~-   76 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKAL-ELGLVD-EIVSFEE--LKKCDVIFLAIPVDAIIEILP-   76 (275)
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHH-HCCCCc-ccCCHHH--HhcCCEEEEeCcHHHHHHHHH-
Confidence            58999999999999999999986  7999999998877653 344311 1112222  234899999998754321000 


Q ss_pred             CCChhcccCCcEEEEEecCCCCCHHHHHHHHC-CCceeccHHH
Q 012866          383 PVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA-GAIIVSGVEM  424 (454)
Q Consensus       383 ~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~-G~~~~~Gl~m  424 (454)
                      .+. . ++++.+|+|+...  ...+.+.+.+. +..++.+-.|
T Consensus        77 ~l~-~-l~~~~iv~d~gs~--k~~i~~~~~~~~~~~~v~~hPm  115 (275)
T PRK08507         77 KLL-D-IKENTTIIDLGST--KAKIIESVPKHIRKNFIAAHPM  115 (275)
T ss_pred             HHh-c-cCCCCEEEECccc--hHHHHHHHHHhcCCCEEecCCc
Confidence            111 2 5677899997553  34555655543 3456666565

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=96.83  E-value=0.0026  Score=62.01  Aligned_cols=67  Identities=18%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG---ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G---~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .++.|||+|.+|.+++..|.+.|   .+|.+++|+.++++++.+.++....  .+..+ .+.++|+||-|++.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~--~~~~~-~~~~advVil~v~~   72 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAA--TDNQE-AAQEADVVVLAVKP   72 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeec--CChHH-HHhcCCEEEEEcCH
Confidence            36899999999999999999988   5899999999999988887654321  12222 23567888888864

>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase

Probab=96.83  E-value=0.0031  Score=60.96  Aligned_cols=73  Identities=22%  Similarity=0.241  Sum_probs=53.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +++|+++|+|+ ||.|++++..|.+.|++|++++|+.++++++.+..+...    .++.+   +.+.      .....|+
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~   82 (262)
T TIGR03325         3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAGLQELEAAHGDAVVGVEGDVRSLDDHKEAVARCVAAFGKIDC   82 (262)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCceEEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            46799999996 699999999999999999999999998888876544321    12221   1110      1245799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        83 li~~Ag~   89 (262)
T TIGR03325        83 LIPNAGI   89 (262)
T ss_pred             EEECCCC
Confidence            9998753

Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.

>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]

Probab=96.83  E-value=0.0029  Score=58.01  Aligned_cols=72  Identities=26%  Similarity=0.403  Sum_probs=56.5

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc----cccc----------cccccCCCC
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA----RPFE----------DILNFQPEK  363 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~----~~~~----------~l~~~~~~~  363 (454)
                      +..|.++|.|+| |+||||+..|++.|++|.+.+++.+.|++.+..++.  ..    +++.          +..+ ....
T Consensus        12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~~~h~aF~~DVS~a~~v~~~l~e~~k-~~g~   90 (256)
T KOG1200|consen   12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDVSKAHDVQNTLEEMEK-SLGT   90 (256)
T ss_pred             HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCCCccceeeeccCcHHHHHHHHHHHHH-hcCC
Confidence            456788999987 999999999999999999999999999999999875  22    1221          1112 3456


Q ss_pred             ccEEEECCCC
Q 012866          364 GAILANATPL  373 (454)
Q Consensus       364 ~divInat~~  373 (454)
                      .+++|||..+
T Consensus        91 psvlVncAGI  100 (256)
T KOG1200|consen   91 PSVLVNCAGI  100 (256)
T ss_pred             CcEEEEcCcc
Confidence            7999999865

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=96.83  E-value=0.0035  Score=59.69  Aligned_cols=47  Identities=34%  Similarity=0.588  Sum_probs=41.5

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      +++++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++...+.
T Consensus         3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (251)
T PRK07231          3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEIL   50 (251)
T ss_pred             cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence            56789999996 799999999999999999999999988888776654

>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.82  E-value=0.0022  Score=62.82  Aligned_cols=76  Identities=25%  Similarity=0.403  Sum_probs=55.5

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----C-c----cccccccc---------cC
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----A-A----RPFEDILN---------FQ  360 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~-~----~~~~~l~~---------~~  360 (454)
                      .+.||.|+|.||. |.|+++|+.|++.|++++++.|..++.+.+++++..    . .    .++.+.++         ..
T Consensus         9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~Dvs~~~~~~~~~~~~~~~   88 (282)
T KOG1205|consen    9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLDVSDEESVKKFVEWAIRH   88 (282)
T ss_pred             HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCccCCHHHHHHHHHHHHHh
Confidence            4679999999985 999999999999999988888888888877665531    2 1    22222211         03


Q ss_pred             CCCccEEEECCCCCC
Q 012866          361 PEKGAILANATPLGM  375 (454)
Q Consensus       361 ~~~~divInat~~g~  375 (454)
                      ..+.|++||....+.
T Consensus        89 fg~vDvLVNNAG~~~  103 (282)
T KOG1205|consen   89 FGRVDVLVNNAGISL  103 (282)
T ss_pred             cCCCCEEEecCcccc
Confidence            567899999775543

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.81  E-value=0.0026  Score=62.98  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=36.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      ++|.|||+|.+|.+++..|+..|.+|++++|+.++.++..
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~   44 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGL   44 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence            6799999999999999999999999999999998876643

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=96.81  E-value=0.0022  Score=61.88  Aligned_cols=35  Identities=26%  Similarity=0.416  Sum_probs=32.1

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        30 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         30 LKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             hcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            567899999999999999999999999 99999764

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.81  E-value=0.0026  Score=62.24  Aligned_cols=98  Identities=20%  Similarity=0.236  Sum_probs=71.1

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----cccccccccCCCCccEEEECCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      ....+|+|||.|-+|.-.+.-...+|++|+|.+++.+|.+.+-..|+.+.    .+...+++ ...++|++|++.=+.-.
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee-~v~~aDlvIgaVLIpga  244 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEE-AVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHH-HhhhccEEEEEEEecCC
Confidence            34568999999988888888888899999999999999999988887653    23344555 56789999998743211


Q ss_pred             CCCCCCCCChh---cccCCcEEEEEecC
Q 012866          377 PNTDRVPVSEE---TLRDYQLVFDAVYT  401 (454)
Q Consensus       377 p~~~~~~i~~~---~l~~~~~v~D~~y~  401 (454)
                        ..+..+..+   .++++.+++|+.-.
T Consensus       245 --kaPkLvt~e~vk~MkpGsVivDVAiD  270 (371)
T COG0686         245 --KAPKLVTREMVKQMKPGSVIVDVAID  270 (371)
T ss_pred             --CCceehhHHHHHhcCCCcEEEEEEEc
Confidence              112224444   35678888888653

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.80  E-value=0.0025  Score=66.19  Aligned_cols=67  Identities=19%  Similarity=0.252  Sum_probs=47.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..+.||++.|+|.|.+|+.++..+..+|++|..++|+.....     .+..  ...++++ .+.++|+|+...|.
T Consensus       147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~~-----~~~~--~~~~l~e-ll~~sDiVslh~Pl  213 (409)
T PRK11790        147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLPL-----GNAR--QVGSLEE-LLAQSDVVSLHVPE  213 (409)
T ss_pred             ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCccccc-----CCce--ecCCHHH-HHhhCCEEEEcCCC
Confidence            468899999999999999999999999999999998742210     0011  1123333 34557777777664

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.80  E-value=0.0031  Score=60.09  Aligned_cols=70  Identities=24%  Similarity=0.281  Sum_probs=55.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH-HHHHhcCCcc-----ccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS-LASDVMGAAR-----PFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~-la~~~~~~~~-----~~~~l~~~~~~~~divInat~~  373 (454)
                      ++++|+|+|-.|+.+|..|.+.|.+|+++.++.+++++ ++++++..++     +.+.|.+..+.++|++|-+|.-
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~   76 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGN   76 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCC
Confidence            36899999999999999999999999999999999888 4445554332     2334555457889999999974

>PRK06057 short chain dehydrogenase; Provisional

Probab=96.80  E-value=0.0036  Score=60.19  Aligned_cols=73  Identities=34%  Similarity=0.372  Sum_probs=53.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc---cccc------CCCCccEEE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~~---l~~~------~~~~~divI  368 (454)
                      +++++++|+|+ ||.|++++..|.+.|++|+++.|+.++.+++.++++....  ++.+   +...      ...+.|+||
T Consensus         5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi   84 (255)
T PRK06057          5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAGKAAADEVGGLFVPTDVTDEDAVNALFDTAAETYGSVDIAF   84 (255)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHcCCcEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            67899999997 7999999999999999999999999888877776543221  2211   1110      124579999


Q ss_pred             ECCCC
Q 012866          369 NATPL  373 (454)
Q Consensus       369 nat~~  373 (454)
                      ++...
T Consensus        85 ~~ag~   89 (255)
T PRK06057         85 NNAGI   89 (255)
T ss_pred             ECCCc
Confidence            98754

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=96.79  E-value=0.0027  Score=63.50  Aligned_cols=69  Identities=17%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      +++|++.|||.|.+|++++..|.+.|.+|++++|..+ +.+++. +.+....+   ..+ ..+++|+|+.++|..
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~-~~Gv~~~s---~~e-a~~~ADiVvLaVpp~   70 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKAT-EDGFKVGT---VEE-AIPQADLIMNLLPDE   70 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHH-HCCCEECC---HHH-HHhcCCEEEEeCCcH
Confidence            3578999999999999999999999998877666543 333333 44443222   222 346789999999854

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.79  E-value=0.0032  Score=62.80  Aligned_cols=41  Identities=22%  Similarity=0.309  Sum_probs=37.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~  344 (454)
                      ++|.|||+|-+|.+++..|+..|++|++++++.++.+++.+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~   45 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARG   45 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            57999999999999999999999999999999988777654

>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]

Probab=96.77  E-value=0.0067  Score=58.14  Aligned_cols=112  Identities=17%  Similarity=0.115  Sum_probs=75.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-C-C-eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-G-A-RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G-~-~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~~  373 (454)
                      ...+++|+|--|-..++...+. - . +|.||||+.+.|+++|+.+....       .....++. ++..+|||+.||+.
T Consensus       139 ~vL~i~GsG~qA~~hi~ih~~~~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~-aV~~sDIIs~atls  217 (333)
T KOG3007|consen  139 CVLTIFGSGLQAFWHIYIHIKLIPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNG-AVSNSDIISGATLS  217 (333)
T ss_pred             eEEEEEcccchhHHHHHHHHHhcccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhc-ccccCceEEecccc
Confidence            3456789998888777765443 3 4 89999999999999998764321       12233444 67889999999974


Q ss_pred             CCCCCCCCCCCChhcccCCcEEEEEec--CCCCCHHHHHHHHCCCceeccHH
Q 012866          374 GMHPNTDRVPVSEETLRDYQLVFDAVY--TPRKTRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       374 g~~p~~~~~~i~~~~l~~~~~v~D~~y--~P~~T~ll~~A~~~G~~~~~Gl~  423 (454)
                      - .|     .+-.+|+.|+ .-+|++-  .|..-..=.++-+.+|..++--+
T Consensus       218 t-eP-----ilfgewlkpg-thIdlVGsf~p~mhEcDdelIq~a~vfVDsre  262 (333)
T KOG3007|consen  218 T-EP-----ILFGEWLKPG-THIDLVGSFKPVMHECDDELIQSACVFVDSRE  262 (333)
T ss_pred             C-Cc-----eeeeeeecCC-ceEeeeccCCchHHHHhHHHhhhheEEEecch
Confidence            2 22     2446788887 4678864  45543333444457888888744

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.76  E-value=0.0022  Score=61.23  Aligned_cols=71  Identities=20%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC-------------------HHHHHHHHHHhcCC--cccc-----
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID-------------------FERAKSLASDVMGA--ARPF-----  353 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt-------------------~~~a~~la~~~~~~--~~~~-----  353 (454)
                      +.+++|+|+|+||.|..++..|+..|+ +++|++.+                   ..|++.+++.+...  .+.+     
T Consensus        19 L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~~~   98 (228)
T cd00757          19 LKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAYNE   98 (228)
T ss_pred             HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEecc
Confidence            567899999999999999999999999 99998543                   23566666555321  1111     


Q ss_pred             ----ccccccCCCCccEEEECCC
Q 012866          354 ----EDILNFQPEKGAILANATP  372 (454)
Q Consensus       354 ----~~l~~~~~~~~divInat~  372 (454)
                          +++.+ ...++|+||+|+.
T Consensus        99 ~i~~~~~~~-~~~~~DvVi~~~d  120 (228)
T cd00757          99 RLDAENAEE-LIAGYDLVLDCTD  120 (228)
T ss_pred             eeCHHHHHH-HHhCCCEEEEcCC
Confidence                11222 2457899999874

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=96.70  E-value=0.0044  Score=60.48  Aligned_cols=35  Identities=26%  Similarity=0.451  Sum_probs=32.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||.|..++.+|+..|+ +|+|++.+
T Consensus        28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D   63 (268)
T PRK15116         28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD   63 (268)
T ss_pred             hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            678899999999999999999999998 99998865

>PRK08818 prephenate dehydrogenase; Provisional

Probab=96.70  E-value=0.00094  Score=68.19  Aligned_cols=105  Identities=19%  Similarity=0.070  Sum_probs=73.6

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~-G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ..+++|||. |-+|+.++.+|++. |.+|+.++|..+.              ..+..+ .+.++|+||-|+|+......-
T Consensus         4 ~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~~--------------~~~~~~-~v~~aDlVilavPv~~~~~~l   68 (370)
T PRK08818          4 QPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADPG--------------SLDPAT-LLQRADVLIFSAPIRHTAALI   68 (370)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCccc--------------cCCHHH-HhcCCCEEEEeCCHHHHHHHH
Confidence            468999999 99999999999975 6699999885211              112222 346789999999986432100


Q ss_pred             CCCCChh--cccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866          381 RVPVSEE--TLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       381 ~~~i~~~--~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      .. +.+.  .++++.+|.|+...  .+..++.+.+.++.++.|-.|+
T Consensus        69 ~~-l~~~~~~l~~~~iVtDVgSv--K~~i~~~~~~~~~~fVG~HPMa  112 (370)
T PRK08818         69 EE-YVALAGGRAAGQLWLDVTSI--KQAPVAAMLASQAEVVGLHPMT  112 (370)
T ss_pred             HH-HhhhhcCCCCCeEEEECCCC--cHHHHHHHHhcCCCEEeeCCCC
Confidence            00 1111  26789999999865  4666788888887888888877

>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.69  E-value=0.0062  Score=59.50  Aligned_cols=74  Identities=16%  Similarity=0.144  Sum_probs=49.9

Q ss_pred             CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHH---HHHHHHhcCC-c--ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERA---KSLASDVMGA-A--RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a---~~la~~~~~~-~--~~~~~---l~~~------~~~  362 (454)
                      +++|.+||.|++   |+|++++.+|++.|++|+++.|+.+.+   +++.+.++.. .  .++.+   +..+      ...
T Consensus         5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g   84 (271)
T PRK06505          5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWG   84 (271)
T ss_pred             cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhC
Confidence            568999999987   899999999999999999999986433   3444443321 1  12221   1110      124


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|++||+....
T Consensus        85 ~iD~lVnnAG~~   96 (271)
T PRK06505         85 KLDFVVHAIGFS   96 (271)
T ss_pred             CCCEEEECCccC
Confidence            679999987543

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.66  E-value=0.011  Score=62.15  Aligned_cols=37  Identities=24%  Similarity=0.538  Sum_probs=33.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      +.+++++|+|.|++|++++..|.+.|++|++++++..
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~   39 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELK   39 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4578999999999999999999999999999987643

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.66  E-value=0.0075  Score=62.89  Aligned_cols=38  Identities=26%  Similarity=0.242  Sum_probs=33.5

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      +.+++|+|+|-|..|++++..|.+.|++|++++.++..
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            44899999999999999999999999999999955433

>PRK07680 late competence protein ComER; Validated

Probab=96.65  E-value=0.0032  Score=61.73  Aligned_cols=117  Identities=13%  Similarity=0.044  Sum_probs=71.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHh-cCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA----RVVIFDIDFERAKSLASDV-MGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~----~v~i~nRt~~~a~~la~~~-~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      ++.|||+|.+|++++.+|.+.|.    +|++++|+.++++.+++.+ +...  ..+..+ ...++|+||-|++...... 
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~--~~~~~~-~~~~aDiVilav~p~~~~~-   77 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHV--AKTIEE-VISQSDLIFICVKPLDIYP-   77 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEE--ECCHHH-HHHhCCEEEEecCHHHHHH-
Confidence            48899999999999999999883    6999999999998888765 2221  112222 2356899999986432111 


Q ss_pred             CCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHH-HCCCceeccHHHHHHHH
Q 012866          380 DRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAE-AAGAIIVSGVEMFLRQA  429 (454)
Q Consensus       380 ~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~-~~G~~~~~Gl~mlv~Qa  429 (454)
                         .+..  ..+.++.+++++. ++....-++... ....+++++...-+.++
T Consensus        78 ---vl~~l~~~l~~~~~iis~~-ag~~~~~L~~~~~~~~~r~~p~~~~~~~~G  126 (273)
T PRK07680         78 ---LLQKLAPHLTDEHCLVSIT-SPISVEQLETLVPCQVARIIPSITNRALSG  126 (273)
T ss_pred             ---HHHHHHhhcCCCCEEEEEC-CCCCHHHHHHHcCCCEEEECCChHHHHhhc
Confidence               0110  1345667888887 333333233221 12345666644333333

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=96.64  E-value=0.0035  Score=59.92  Aligned_cols=35  Identities=26%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|.||.|..++.+|+..|+ ++++++.+
T Consensus         9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D   44 (231)
T cd00755           9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD   44 (231)
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            567899999999999999999999999 99999865

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.63  E-value=0.0057  Score=57.57  Aligned_cols=75  Identities=17%  Similarity=0.109  Sum_probs=53.0

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..+++||+|||+|+|..|..=+..|.+.|++|+|++.+. +..+.++.+-...+.. ..........+++||-||+-
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~~~~lviaAt~d   82 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLDDAFLVIAATDD   82 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhcCceEEEEeCCC
Confidence            356889999999999999999999999999999999987 5555555554422222 11111123447888888853

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=96.62  E-value=0.0023  Score=62.28  Aligned_cols=69  Identities=28%  Similarity=0.320  Sum_probs=53.1

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      .-+.||.++|.|-|..|+..+.+|+..|++|+|..-++-.|-+.+-+ |-+..++++    ...+.||+|.||.
T Consensus       210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMe-G~~V~tm~e----a~~e~difVTtTG  278 (434)
T KOG1370|consen  210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAME-GYEVTTLEE----AIREVDIFVTTTG  278 (434)
T ss_pred             heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhh-ccEeeeHHH----hhhcCCEEEEccC
Confidence            55789999999999999999999999999999999988776654422 223334443    3456789998885

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=96.62  E-value=0.0013  Score=67.59  Aligned_cols=89  Identities=18%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             CCceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          302 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       302 ~~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ..+++.||| .|.+|++++.+|.+.|.+|++++|+..                ++..+ ...++|+||-|+|.......-
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~----------------~~~~~-~~~~aDlVilavP~~~~~~~~  159 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW----------------DRAED-ILADAGMVIVSVPIHLTEEVI  159 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc----------------hhHHH-HHhcCCEEEEeCcHHHHHHHH
Confidence            347899999 899999999999999999999999631                01111 234689999999976432100


Q ss_pred             CCCCChhcccCCcEEEEEecCCCCCHHHHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE  412 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~  412 (454)
                      . .+. . ++++.+|.|+...  .+..++++.
T Consensus       160 ~-~l~-~-l~~~~iv~Dv~Sv--K~~~~~~~~  186 (374)
T PRK11199        160 A-RLP-P-LPEDCILVDLTSV--KNAPLQAML  186 (374)
T ss_pred             H-HHh-C-CCCCcEEEECCCc--cHHHHHHHH
Confidence            0 011 1 5678999999654  233444444

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.61  E-value=0.006  Score=60.89  Aligned_cols=39  Identities=31%  Similarity=0.342  Sum_probs=35.1

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      ++|.|||+|-+|.+++..|++.|.+|++++|+.++.+..
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~   41 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAA   41 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHH
Confidence            369999999999999999999999999999998876653

>KOG0172 consensus Lysine-ketoglutarate reductase/saccharopine dehydrogenase [Amino acid transport and metabolism]

Probab=96.61  E-value=0.0009  Score=67.15  Aligned_cols=135  Identities=20%  Similarity=0.274  Sum_probs=89.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCcccccc------ccccCCCCccEEEECCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFED------ILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~------l~~~~~~~~divInat~~g~  375 (454)
                      +++||++|+|-+++.++-.|++.+- +|+|.+|+...||++++.++.+++.++-      |.. ..+.-|+++.-+|-..
T Consensus         2 ~~~vlllgsg~v~~p~~d~ls~~~dv~vtva~~~~~~~~~~~~~~~~~av~ldv~~~~~~L~~-~v~~~D~viSLlP~t~   80 (445)
T KOG0172|consen    2 KKGVLLLGSGFVSRPVADFLSRKKDVNVTVASRTLKDAEALVKGINIKAVSLDVADEELALRK-EVKPLDLVISLLPYTF   80 (445)
T ss_pred             CcceEEecCccccchHHHHHhhcCCceEEEehhhHHHHHHHhcCCCccceEEEccchHHHHHh-hhcccceeeeeccchh
Confidence            4789999999999999999998876 9999999999999999987766554431      222 3566799998888765


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEecC-CCCCHHHHHHHHCCCce------eccHHHHH-----------HHHHHHHHHhc
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAVYT-PRKTRLLKDAEAAGAII------VSGVEMFL-----------RQAIGQFNLFT  437 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~y~-P~~T~ll~~A~~~G~~~------~~Gl~mlv-----------~Qa~~~f~lw~  437 (454)
                      +|.     +.+.+.....-++--.|. |+...|-+.|...|..+      ..|++-+.           -|-+.+|+-++
T Consensus        81 h~l-----VaK~~i~~~~~~vtsSyv~pe~~~L~~~~v~AG~ti~~e~gldpGidhm~a~~ti~~vh~hgg~i~sf~syc  155 (445)
T KOG0172|consen   81 HPL-----VAKGCIITKEDSVTSSYVDPELEELEKAAVPAGSTIMNEIGLDPGIDHMPAMKTIDLVHEHGGKIKSFKSYC  155 (445)
T ss_pred             hHH-----HHHHHHHhhcccccccccCHHHHhhhhhccCCCceEecccccCcchhhhhhhccchHHHhhcceeeehhhhc
Confidence            543     233333333333444554 43344444555566544      45666442           24466777777


Q ss_pred             CC-CCCH
Q 012866          438 GK-EAPK  443 (454)
Q Consensus       438 g~-~~p~  443 (454)
                      |- ++|.
T Consensus       156 Gglpape  162 (445)
T KOG0172|consen  156 GGLPAPE  162 (445)
T ss_pred             CCccChh
Confidence            54 4443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.61  E-value=0.0052  Score=61.68  Aligned_cols=39  Identities=26%  Similarity=0.330  Sum_probs=35.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      ++|.|||+|-||+.++..++..|++|++++++++..+.+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~   46 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAAL   46 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            689999999999999999999999999999998866543

>PLN02688 pyrroline-5-carboxylate reductase

Probab=96.61  E-value=0.004  Score=60.58  Aligned_cols=65  Identities=18%  Similarity=0.153  Sum_probs=48.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC----eEEEE-eCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA----RVVIF-DIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~----~v~i~-nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ++.+||.|.||.+++..|.+.|.    +|+++ ||+.++++.+.+ ++...  ..+..+ ...++|+||-|++.
T Consensus         2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~-~g~~~--~~~~~e-~~~~aDvVil~v~~   71 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS-LGVKT--AASNTE-VVKSSDVIILAVKP   71 (266)
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH-cCCEE--eCChHH-HHhcCCEEEEEECc
Confidence            58899999999999999999986    89999 999999877654 44322  122222 23568999988863

>PRK08862 short chain dehydrogenase; Provisional

Probab=96.61  E-value=0.005  Score=58.57  Aligned_cols=46  Identities=20%  Similarity=0.328  Sum_probs=41.2

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|.|++ |.|++++..|++.|++|.+++|+.++.+++.+++
T Consensus         3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i   49 (227)
T PRK08862          3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQC   49 (227)
T ss_pred             CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            568999999976 9999999999999999999999999988886655

>PRK06500 short chain dehydrogenase; Provisional

Probab=96.58  E-value=0.008  Score=57.21  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=53.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccccc---cc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDIL---NF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~l~---~~------~~~~~di  366 (454)
                      +++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+++.++++...    .++.+..   .+      .....|+
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (249)
T PRK06500          4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELGESALVIRADAGDVAAQKALAQALAEAFGRLDA   83 (249)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHhCCCCE
Confidence            46789999996 799999999999999999999999888888777765432    1221111   10      1245799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        84 vi~~ag~   90 (249)
T PRK06500         84 VFINAGV   90 (249)
T ss_pred             EEECCCC
Confidence            9998754

>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.58  E-value=0.0056  Score=58.98  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=36.8

Q ss_pred             CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|.++|.|++   |+|++++..|++.|++|++..|+. +.++..+++
T Consensus         5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~-~~~~~~~~~   52 (252)
T PRK06079          5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQND-RMKKSLQKL   52 (252)
T ss_pred             cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCch-HHHHHHHhh
Confidence            678999999985   999999999999999999999984 444443433

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.57  E-value=0.0063  Score=60.20  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=35.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      ++|.|||+|-+|++++..|+..|.+|+++++++++.++.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~   42 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNA   42 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence            579999999999999999999999999999999887643

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.57  E-value=0.007  Score=59.84  Aligned_cols=66  Identities=14%  Similarity=0.090  Sum_probs=49.0

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc---------cccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA---------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~---------~~~~~l~~~~~~~~divInat~~  373 (454)
                      ++.|+|+|.+|..++..|.+.|.+|++++|+.++.+.+.+. +...         ....+..+  ...+|+||-||+.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~--~~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNEN-GLRLEDGEITVPVLAADDPAE--LGPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHc-CCcccCCceeecccCCCChhH--cCCCCEEEEeccc
Confidence            58999999999999999999999999999988887776543 2211         01122222  2568999999875

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.55  E-value=0.0055  Score=65.34  Aligned_cols=40  Identities=23%  Similarity=0.205  Sum_probs=36.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      ++|.|||+|-||++++..|+..|++|+++||++++.+.+.
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~   44 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIG   44 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence            4799999999999999999999999999999999877653

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.55  E-value=0.006  Score=60.31  Aligned_cols=38  Identities=26%  Similarity=0.362  Sum_probs=35.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS  341 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~  341 (454)
                      ++|.|||+|-||+.++..++..|++|++++++++..+.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~   43 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATA   43 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            47999999999999999999999999999999998766

>PRK08339 short chain dehydrogenase; Provisional

Probab=96.55  E-value=0.0062  Score=59.07  Aligned_cols=47  Identities=21%  Similarity=0.310  Sum_probs=42.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|.++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   52 (263)
T PRK08339          5 DLSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKI   52 (263)
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999997 59999999999999999999999999888877665

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.53  E-value=0.0072  Score=60.58  Aligned_cols=74  Identities=24%  Similarity=0.316  Sum_probs=55.7

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~  372 (454)
                      .++++.|||+|.+|.++++.|...|.  +|.+++++.++++..+.++....       +...+.+  ..+++|+||.+..
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~--~~~~adivIitag   82 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYS--DCKDADLVVITAG   82 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHH--HhCCCCEEEEecC
Confidence            35799999999999999999999987  79999999998888877765321       1111222  3578999999876


Q ss_pred             CCCCC
Q 012866          373 LGMHP  377 (454)
Q Consensus       373 ~g~~p  377 (454)
                      ..-.|
T Consensus        83 ~~~k~   87 (315)
T PRK00066         83 APQKP   87 (315)
T ss_pred             CCCCC
Confidence            64444

>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.51  E-value=0.01  Score=58.05  Aligned_cols=73  Identities=11%  Similarity=0.180  Sum_probs=50.7

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCC-c--cccccc---ccc------CCC
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGA-A--RPFEDI---LNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~-~--~~~~~l---~~~------~~~  362 (454)
                      +++|.++|.|+   +|+|++++..|++.|++|++..|+.   +++++++++++.. .  +++.+.   ..+      ...
T Consensus         3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g   82 (274)
T PRK08415          3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLG   82 (274)
T ss_pred             cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcC
Confidence            46899999998   4999999999999999999999984   4555665555432 1  122221   110      124


Q ss_pred             CccEEEECCCC
Q 012866          363 KGAILANATPL  373 (454)
Q Consensus       363 ~~divInat~~  373 (454)
                      ..|++||+...
T Consensus        83 ~iDilVnnAG~   93 (274)
T PRK08415         83 KIDFIVHSVAF   93 (274)
T ss_pred             CCCEEEECCcc
Confidence            67999998754

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.50  E-value=0.0048  Score=52.12  Aligned_cols=105  Identities=23%  Similarity=0.305  Sum_probs=70.5

Q ss_pred             eEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSR--GAR-VVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~--G~~-v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ++.|||+|..|+.-..++.+.  +.+ +.|+++++++++++++.++... .+++++-+  ..+.|+|+.+||.....   
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~I~tp~~~h~---   76 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLA--DEDVDAVIIATPPSSHA---   76 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHH--HTTESEEEEESSGGGHH---
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHH--hhcCCEEEEecCCcchH---
Confidence            589999999999999888877  345 4699999999999999987652 23333322  13689999999864322   


Q ss_pred             CCCCChhcccCC-cEEEEEecCCCC------CHHHHHHHHCCCcee
Q 012866          381 RVPVSEETLRDY-QLVFDAVYTPRK------TRLLKDAEAAGAIIV  419 (454)
Q Consensus       381 ~~~i~~~~l~~~-~~v~D~~y~P~~------T~ll~~A~~~G~~~~  419 (454)
                        .+-...+..+ .+++|   +|.-      -.+++.|++.|..+.
T Consensus        77 --~~~~~~l~~g~~v~~E---KP~~~~~~~~~~l~~~a~~~~~~~~  117 (120)
T PF01408_consen   77 --EIAKKALEAGKHVLVE---KPLALTLEEAEELVEAAKEKGVKVM  117 (120)
T ss_dssp             --HHHHHHHHTTSEEEEE---SSSSSSHHHHHHHHHHHHHHTSCEE
T ss_pred             --HHHHHHHHcCCEEEEE---cCCcCCHHHHHHHHHHHHHhCCEEE
Confidence              1223344444 34444   4442      456677777777654

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.50  E-value=0.012  Score=61.15  Aligned_cols=100  Identities=21%  Similarity=0.174  Sum_probs=64.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----------------Ccccc-ccccccCCCCccEE
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----------------AARPF-EDILNFQPEKGAIL  367 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----------------~~~~~-~~l~~~~~~~~div  367 (454)
                      ++.|||.|-+|.+++..|++.|++|++++|+.++.+.+.+....                ..... .+..+ ...++|+|
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~-~~~~advv   80 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYED-AIRDADVI   80 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHH-HHhhCCEE
Confidence            58899999999999999999999999999999998887642100                00011 12222 24678999


Q ss_pred             EECCCCCCCCCCCC--CCCC---h---hcccCCcEEEEEecCCCCC
Q 012866          368 ANATPLGMHPNTDR--VPVS---E---ETLRDYQLVFDAVYTPRKT  405 (454)
Q Consensus       368 Inat~~g~~p~~~~--~~i~---~---~~l~~~~~v~D~~y~P~~T  405 (454)
                      |-|+|.........  ..+.   .   ..++++.+++|..-.|..|
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt  126 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGT  126 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCc
Confidence            99988643221000  0011   1   1246778888887665544

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=96.50  E-value=0.0033  Score=62.74  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=31.9

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +.++.|||+|.+|++++..|.+.|.+|++++|+.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4689999999999999999999999999999985

>PRK05867 short chain dehydrogenase; Provisional

Probab=96.49  E-value=0.0066  Score=58.23  Aligned_cols=47  Identities=28%  Similarity=0.484  Sum_probs=42.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|.+.|++|.++.|+.++++++++++
T Consensus         6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   53 (253)
T PRK05867          6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEI   53 (253)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            367899999997 69999999999999999999999999988887765

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=96.49  E-value=0.007  Score=58.09  Aligned_cols=48  Identities=31%  Similarity=0.424  Sum_probs=42.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ++++|+++|.|+ |+.|++++..|.+.|++|++.+|+.++.+++.+.+.
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~   55 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLK   55 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999996 799999999999999999999999988877766653

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.48  E-value=0.01  Score=57.66  Aligned_cols=73  Identities=14%  Similarity=0.149  Sum_probs=48.2

Q ss_pred             CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCC-c--ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGA-A--RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~-~--~~~~~---l~~~------~~~  362 (454)
                      +++|.++|.|++   |+|++++..|++.|++|++..|+.   +.++++....+.. .  +++.+   +..+      ...
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   83 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWP   83 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcC
Confidence            568999999985   899999999999999999998873   2344443332211 1  12221   1110      124


Q ss_pred             CccEEEECCCC
Q 012866          363 KGAILANATPL  373 (454)
Q Consensus       363 ~~divInat~~  373 (454)
                      ..|++||+...
T Consensus        84 ~iD~linnAg~   94 (262)
T PRK07984         84 KFDGFVHSIGF   94 (262)
T ss_pred             CCCEEEECCcc
Confidence            57999998864

>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.47  E-value=0.013  Score=56.54  Aligned_cols=75  Identities=15%  Similarity=0.181  Sum_probs=51.0

Q ss_pred             CCCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcCC-c--ccccc---cccc------C
Q 012866          299 SPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVMGA-A--RPFED---ILNF------Q  360 (454)
Q Consensus       299 ~~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~---~a~~la~~~~~~-~--~~~~~---l~~~------~  360 (454)
                      ..+++|.++|.|++   |+|++++..|++.|++|++..|+.+   ..++++++++.. .  +++.+   +..+      .
T Consensus         6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   85 (258)
T PRK07533          6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEE   85 (258)
T ss_pred             cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHH
Confidence            35778999999975   8999999999999999999999853   345555555421 1  12211   1110      1


Q ss_pred             CCCccEEEECCCC
Q 012866          361 PEKGAILANATPL  373 (454)
Q Consensus       361 ~~~~divInat~~  373 (454)
                      ....|++||+...
T Consensus        86 ~g~ld~lv~nAg~   98 (258)
T PRK07533         86 WGRLDFLLHSIAF   98 (258)
T ss_pred             cCCCCEEEEcCcc
Confidence            2457999998643

>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]

Probab=96.46  E-value=0.0055  Score=60.20  Aligned_cols=46  Identities=30%  Similarity=0.445  Sum_probs=41.6

Q ss_pred             CceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 012866          303 GRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG  348 (454)
Q Consensus       303 ~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~  348 (454)
                      |+=++|.||+ |+||+.+..|+++|.+|++++||++|.+++++++..
T Consensus        49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~KL~~v~kEI~~   95 (312)
T KOG1014|consen   49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEE   95 (312)
T ss_pred             CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Confidence            4668999986 999999999999999999999999999999888753

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.46  E-value=0.0087  Score=60.09  Aligned_cols=69  Identities=23%  Similarity=0.274  Sum_probs=52.5

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc--c-ccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE--D-ILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~--~-l~~~~~~~~divInat~  372 (454)
                      .|++|+|+|+||.|..++..++.+|++|+.++|+.+|. ++|++++... +...  + .+. ..+.+|++|++.+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~-e~a~~lGAd~~i~~~~~~~~~~-~~~~~d~ii~tv~  238 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKL-ELAKKLGADHVINSSDSDALEA-VKEIADAIIDTVG  238 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHH-HHHHHhCCcEEEEcCCchhhHH-hHhhCcEEEECCC
Confidence            48999999999999999998888999999999998884 5677887643 2221  1 111 1123899999987

>PRK05854 short chain dehydrogenase; Provisional

Probab=96.46  E-value=0.0081  Score=59.99  Aligned_cols=48  Identities=25%  Similarity=0.371  Sum_probs=42.4

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .++++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++..+++
T Consensus        10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l   58 (313)
T PRK05854         10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAI   58 (313)
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999996 59999999999999999999999999888776655

>PLN02858 fructose-bisphosphate aldolase

Probab=96.45  E-value=0.0046  Score=73.22  Aligned_cols=107  Identities=15%  Similarity=0.115  Sum_probs=72.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      .+++-+||.|-||..++..|.+.|++|++|||++++++++++. |....  +...+ ...++|+||.+.|-+-  .....
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~-Ga~~~--~s~~e-~a~~advVi~~l~~~~--~v~~V   77 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCEL-GGHRC--DSPAE-AAKDAAALVVVLSHPD--QVDDV   77 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHc-CCeec--CCHHH-HHhcCCEEEEEcCChH--HHHHH
Confidence            4679999999999999999999999999999999999998764 33221  12222 2356899998776431  11111


Q ss_pred             CCCh----hcccCCcEEEEEecC-CCCC-HHHHHHHHCC
Q 012866          383 PVSE----ETLRDYQLVFDAVYT-PRKT-RLLKDAEAAG  415 (454)
Q Consensus       383 ~i~~----~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G  415 (454)
                      .+..    +.+.++.+++|+.-. |..+ .+-+.++++|
T Consensus        78 ~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g  116 (1378)
T PLN02858         78 FFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK  116 (1378)
T ss_pred             HhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence            1111    124577899999875 4443 3445556677

>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.45  E-value=0.011  Score=57.89  Aligned_cols=74  Identities=18%  Similarity=0.169  Sum_probs=51.4

Q ss_pred             CCCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCCc---ccccc---cccc------CC
Q 012866          300 PLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFED---ILNF------QP  361 (454)
Q Consensus       300 ~~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~~---~~~~~---l~~~------~~  361 (454)
                      -+++|.++|.|+   +|+|++++..|++.|++|++..|+.   +++++++++++...   .++.+   ++.+      ..
T Consensus         7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   86 (272)
T PRK08159          7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAVFETLEKKW   86 (272)
T ss_pred             cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHHHHHHHHhc
Confidence            457899999998   5999999999999999999988863   55666766654311   12211   1110      12


Q ss_pred             CCccEEEECCCC
Q 012866          362 EKGAILANATPL  373 (454)
Q Consensus       362 ~~~divInat~~  373 (454)
                      ...|++||+...
T Consensus        87 g~iD~lv~nAG~   98 (272)
T PRK08159         87 GKLDFVVHAIGF   98 (272)
T ss_pred             CCCcEEEECCcc
Confidence            457999998754

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.44  E-value=0.016  Score=61.43  Aligned_cols=35  Identities=26%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +.+|+++|+|.|-.|++++..|.+.|++|++++-.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~   40 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFC   40 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCC
Confidence            56899999999999999999999999999999843

>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated

Probab=96.44  E-value=0.0064  Score=63.03  Aligned_cols=74  Identities=22%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc--ccccc---ccccCCCCccEEEECC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA--RPFED---ILNFQPEKGAILANAT  371 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~--~~~~~---l~~~~~~~~divInat  371 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++.++.......  ..  .++.+   +.+ ...+.|++||+.
T Consensus       175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l~~~~~~~~~~v~~v~~Dvsd~~~v~~-~l~~IDiLInnA  253 (406)
T PRK07424        175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKITLEINGEDLPVKTLHWQVGQEAALAE-LLEKVDILIINH  253 (406)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcCCCeEEEEeeCCCHHHHHH-HhCCCCEEEECC
Confidence            457899999997 7999999999999999999999988765443322111  11  12222   222 245789999877


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      ..+
T Consensus       254 Gi~  256 (406)
T PRK07424        254 GIN  256 (406)
T ss_pred             CcC
Confidence            543

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.43  E-value=0.015  Score=58.48  Aligned_cols=116  Identities=24%  Similarity=0.284  Sum_probs=74.5

Q ss_pred             ceEEEEccchhH-HHHHHHHHHCC--C-eEEEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCC
Q 012866          304 RMFVLAGAGGAG-RALAFGAKSRG--A-RVVIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       304 k~vlViGaGG~a-rai~~~L~~~G--~-~v~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      -++.|||+|+.+ +..+..+.+.+  + -+.+++|+.+++++++++++..  +.+++++-+  ..+.|+|+.|||...+.
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~iD~V~Iatp~~~H~   81 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLA--DPDIDAVYIATPNALHA   81 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEcCCChhhH
Confidence            479999999665 56777888775  4 6889999999999999999875  234454432  24479999999976542


Q ss_pred             CCCCCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHHHHHHHH
Q 012866          378 NTDRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMFLRQA  429 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~mlv~Qa  429 (454)
                      .     +....|..++ ++++   +|.-      ..+++.|+++|....-|....-..+
T Consensus        82 e-----~~~~AL~aGkhVl~E---KPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~  132 (342)
T COG0673          82 E-----LALAALEAGKHVLCE---KPLALTLEEAEELVELARKAGVKLMVGFNRRFDPA  132 (342)
T ss_pred             H-----HHHHHHhcCCEEEEc---CCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHH
Confidence            1     2233344333 3332   3331      3455666667776666655443333

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.42  E-value=0.0028  Score=57.49  Aligned_cols=96  Identities=25%  Similarity=0.211  Sum_probs=61.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc--------------------c----cc
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF--------------------E----DI  356 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~--------------------~----~l  356 (454)
                      +...+++|+|+|.+|+.++..+..+|+++++.+..+++.+++-..... .+.+                    +    .+
T Consensus        18 ~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f   96 (168)
T PF01262_consen   18 VPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAY-FIEVDYEDHLERKDFDKADYYEHPESYESNF   96 (168)
T ss_dssp             E-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTE-ESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred             CCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCc-eEEEcccccccccccchhhhhHHHHHhHHHH
Confidence            456899999999999999999999999999999999888776543321 1111                    0    01


Q ss_pred             cccCCCCccEEEECCC-CCCCCCCCCCCCChh---cccCCcEEEEEecC
Q 012866          357 LNFQPEKGAILANATP-LGMHPNTDRVPVSEE---TLRDYQLVFDAVYT  401 (454)
Q Consensus       357 ~~~~~~~~divInat~-~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~  401 (454)
                      .+ .+..+|+||++.- .+-   ..+..+..+   .++++.++.|++-.
T Consensus        97 ~~-~i~~~d~vI~~~~~~~~---~~P~lvt~~~~~~m~~gsvIvDis~D  141 (168)
T PF01262_consen   97 AE-FIAPADIVIGNGLYWGK---RAPRLVTEEMVKSMKPGSVIVDISCD  141 (168)
T ss_dssp             HH-HHHH-SEEEEHHHBTTS---S---SBEHHHHHTSSTTEEEEETTGG
T ss_pred             HH-HHhhCcEEeeecccCCC---CCCEEEEhHHhhccCCCceEEEEEec
Confidence            11 2456899986553 221   112235544   35788999999764

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK05993 short chain dehydrogenase; Provisional

Probab=96.41  E-value=0.0058  Score=59.66  Aligned_cols=72  Identities=22%  Similarity=0.214  Sum_probs=50.9

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc-------CCCCccEEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF-------QPEKGAILAN  369 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~-------~~~~~divIn  369 (454)
                      +++++|+|+ ||.|++++..|++.|++|++++|+.++.+++... +...  .++.+   +...       .....|++||
T Consensus         4 ~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~-~~~~~~~Dl~d~~~~~~~~~~~~~~~~g~id~li~   82 (277)
T PRK05993          4 KRSILITGCSSGIGAYCARALQSDGWRVFATCRKEEDVAALEAE-GLEAFQLDYAEPESIAALVAQVLELSGGRLDALFN   82 (277)
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHC-CceEEEccCCCHHHHHHHHHHHHHHcCCCccEEEE
Confidence            578999997 8999999999999999999999999988777542 2211  12221   1110       1135799999


Q ss_pred             CCCCCC
Q 012866          370 ATPLGM  375 (454)
Q Consensus       370 at~~g~  375 (454)
                      +...+.
T Consensus        83 ~Ag~~~   88 (277)
T PRK05993         83 NGAYGQ   88 (277)
T ss_pred             CCCcCC
Confidence            876543

>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]

Probab=96.41  E-value=0.0086  Score=58.71  Aligned_cols=49  Identities=33%  Similarity=0.476  Sum_probs=43.8

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ..+.+|.++|.|++ |+|++++..|++.|++|+|+.|+.++.++.+..+.
T Consensus         4 ~~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~   53 (270)
T KOG0725|consen    4 GRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELG   53 (270)
T ss_pred             ccCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            45789999999976 99999999999999999999999999888776653

>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.40  E-value=0.0092  Score=57.72  Aligned_cols=73  Identities=16%  Similarity=0.199  Sum_probs=50.8

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHHhc-CCc----ccccc---cccc------C
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDID---FERAKSLASDVM-GAA----RPFED---ILNF------Q  360 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt---~~~a~~la~~~~-~~~----~~~~~---l~~~------~  360 (454)
                      +++|.++|.|+   +|+|++++..|++.|++|++.+|+   .++.+++++++. ...    +++.+   +..+      .
T Consensus         5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~   84 (257)
T PRK08594          5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITACFETIKEE   84 (257)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHHHHHHHHHh
Confidence            56899999997   599999999999999999998765   456677777653 211    12211   1110      1


Q ss_pred             CCCccEEEECCCC
Q 012866          361 PEKGAILANATPL  373 (454)
Q Consensus       361 ~~~~divInat~~  373 (454)
                      ....|++||+...
T Consensus        85 ~g~ld~lv~nag~   97 (257)
T PRK08594         85 VGVIHGVAHCIAF   97 (257)
T ss_pred             CCCccEEEECccc
Confidence            2567999998754

>PRK12742 oxidoreductase; Provisional

Probab=96.39  E-value=0.013  Score=55.44  Aligned_cols=73  Identities=21%  Similarity=0.266  Sum_probs=51.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhcCCcc--cccc---cccc--CCCCccEEEECC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDVMGAAR--PFED---ILNF--QPEKGAILANAT  371 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~~~~~~--~~~~---l~~~--~~~~~divInat  371 (454)
                      +++|+++|+|+ ||.|++++..|.+.|++|++..| +.++.+++..+++....  ++.+   +.+.  .....|++|++.
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~li~~a   83 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVQTDSADRDAVIDVVRKSGALDILVVNA   83 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHhCCeEEecCCCCHHHHHHHHHHhCCCcEEEECC
Confidence            56899999996 79999999999999998877654 67777777776654321  2221   1110  123479999987


Q ss_pred             CC
Q 012866          372 PL  373 (454)
Q Consensus       372 ~~  373 (454)
                      ..
T Consensus        84 g~   85 (237)
T PRK12742         84 GI   85 (237)
T ss_pred             CC
Confidence            54

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.39  E-value=0.023  Score=59.93  Aligned_cols=97  Identities=25%  Similarity=0.314  Sum_probs=60.6

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      +++++++|+|.||+|++++..|.++|++|+++++......++. ..+...   .........++|+||-+.  |..|.  
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~-~~g~~~---~~~~~~~~~~~d~vv~sp--~i~~~--   78 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAA-AAGITT---ADLRTADWSGFAALVLSP--GVPLT--   78 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHH-hcCccc---cCCChhHHcCCCEEEECC--CCCcc--
Confidence            5688999999999999999999999999999998754433332 223221   111110123567776422  22111  


Q ss_pred             CCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                                          .|..-+.+.+|+++|++++..++.+
T Consensus        79 --------------------~~~~~~~v~~a~~~gi~i~~~~~~~  103 (460)
T PRK01390         79 --------------------HPKPHWVVDLARAAGVEVIGDIELF  103 (460)
T ss_pred             --------------------CCcccHHHHHHHHcCCcEEeHHHHH
Confidence                                0111146778888888888777754

>PRK06182 short chain dehydrogenase; Validated

Probab=96.38  E-value=0.0059  Score=59.37  Aligned_cols=71  Identities=23%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEEEEC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAILANA  370 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~divIna  370 (454)
                      +++++|+|+ ||.|++++..|.+.|++|+++.|+.++.+++... +...  .++.+   +...      ...+.|++||+
T Consensus         3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~~~id~li~~   81 (273)
T PRK06182          3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLASL-GVHPLSLDVTDEASIKAAVDTIIAEEGRIDVLVNN   81 (273)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEEC
Confidence            678999996 7999999999999999999999999887776542 2211  12221   1110      12367999998


Q ss_pred             CCCC
Q 012866          371 TPLG  374 (454)
Q Consensus       371 t~~g  374 (454)
                      ...+
T Consensus        82 ag~~   85 (273)
T PRK06182         82 AGYG   85 (273)
T ss_pred             CCcC
Confidence            8654

>PRK05717 oxidoreductase; Validated

Probab=96.35  E-value=0.01  Score=57.00  Aligned_cols=77  Identities=25%  Similarity=0.295  Sum_probs=55.8

Q ss_pred             CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cc----cc--CCCC
Q 012866          298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---IL----NF--QPEK  363 (454)
Q Consensus       298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~----~~--~~~~  363 (454)
                      +..+++|+++|+|+ |+.|++++..|.+.|++|++++|+.++++++.++++...    .++.+   +.    ..  ....
T Consensus         5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~   84 (255)
T PRK05717          5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKALGENAWFIAMDVADEAQVAAGVAEVLGQFGR   84 (255)
T ss_pred             CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            35678999999996 799999999999999999999999888888777654321    12211   11    10  1235


Q ss_pred             ccEEEECCCCC
Q 012866          364 GAILANATPLG  374 (454)
Q Consensus       364 ~divInat~~g  374 (454)
                      .|++|++....
T Consensus        85 id~li~~ag~~   95 (255)
T PRK05717         85 LDALVCNAAIA   95 (255)
T ss_pred             CCEEEECCCcc
Confidence            79999987643

>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.35  E-value=0.011  Score=56.96  Aligned_cols=74  Identities=15%  Similarity=0.201  Sum_probs=51.6

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHhcCCc----ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF--ERAKSLASDVMGAA----RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~--~~a~~la~~~~~~~----~~~~~---l~~~------~~~  362 (454)
                      +++|.++|.|+   +|+|++++..|++.|++|++.+|+.  +..++++++++...    +++.+   +.++      ...
T Consensus         5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~g   84 (256)
T PRK07889          5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLASLADRVREHVD   84 (256)
T ss_pred             ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            56899999996   6999999999999999999998763  55667776664321    12211   1110      124


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|++||+....
T Consensus        85 ~iD~li~nAG~~   96 (256)
T PRK07889         85 GLDGVVHSIGFA   96 (256)
T ss_pred             CCcEEEEccccc
Confidence            689999987543

>PRK06949 short chain dehydrogenase; Provisional

Probab=96.34  E-value=0.011  Score=56.64  Aligned_cols=48  Identities=31%  Similarity=0.477  Sum_probs=43.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .++++++++|+|+ |+.|++++..|.+.|++|+++.|+.++++++..++
T Consensus         5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l   53 (258)
T PRK06949          5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEI   53 (258)
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4577899999996 79999999999999999999999999988887765

>PRK08277 D-mannonate oxidoreductase; Provisional

Probab=96.33  E-value=0.0097  Score=57.93  Aligned_cols=76  Identities=26%  Similarity=0.334  Sum_probs=55.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QP  361 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~  361 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++++..   ..    .++.+   +...      ..
T Consensus         6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (278)
T PRK08277          6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKADVLDKESLEQARQQILEDF   85 (278)
T ss_pred             eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            4577899999996 7999999999999999999999999888888776521   11    12221   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus        86 g~id~li~~ag~~   98 (278)
T PRK08277         86 GPCDILINGAGGN   98 (278)
T ss_pred             CCCCEEEECCCCC
Confidence            4679999988644

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.32  E-value=0.049  Score=52.56  Aligned_cols=134  Identities=19%  Similarity=0.227  Sum_probs=82.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEE--------eCCHHHHHHH---
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF--------DIDFERAKSL---  342 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~--------nRt~~~a~~l---  342 (454)
                      +.|...+++..+...+        ..+++++++.|-|.|.+|+.++..|.+.|++|+.+        |.+.-..++|   
T Consensus        11 g~GV~~~~~~~~~~~~--------~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~   82 (244)
T PF00208_consen   11 GYGVAYAIEAALEHLG--------GDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRI   82 (244)
T ss_dssp             HHHHHHHHHHHHHHTT--------CHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC--------CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHH
Confidence            5677777777665311        23588999999999999999999999999865443        5433333444   


Q ss_pred             HHHhcCCccccc--------ccc---ccCCCCccEEEECCCCCCCCCCCCCCCChhc----cc-CCcEEEEEecCCCCCH
Q 012866          343 ASDVMGAARPFE--------DIL---NFQPEKGAILANATPLGMHPNTDRVPVSEET----LR-DYQLVFDAVYTPRKTR  406 (454)
Q Consensus       343 a~~~~~~~~~~~--------~l~---~~~~~~~divInat~~g~~p~~~~~~i~~~~----l~-~~~~v~D~~y~P~~T~  406 (454)
                      .++.+.....+.        -+.   ++...++||+|-|.--+        .|..+.    ++ +.++++.-..+|...+
T Consensus        83 ~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~--------~I~~~~~~~~i~~~akiIvegAN~p~t~~  154 (244)
T PF00208_consen   83 KEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGN--------VINEDNAPSLIKSGAKIIVEGANGPLTPE  154 (244)
T ss_dssp             HHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSST--------SBSCHHHCHCHHTT-SEEEESSSSSBSHH
T ss_pred             HHHhCCcccccccccccceeEeccccccccccccEEEEcCCCC--------eeCHHHHHHHHhccCcEEEeCcchhccHH
Confidence            344443111111        011   11224789999874322        133322    22 2589999999998666


Q ss_pred             HHHHHHHCCCceeccHH
Q 012866          407 LLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       407 ll~~A~~~G~~~~~Gl~  423 (454)
                      -.+.-+++|+.+++..-
T Consensus       155 a~~~L~~rGI~viPD~~  171 (244)
T PF00208_consen  155 ADEILRERGILVIPDFL  171 (244)
T ss_dssp             HHHHHHHTT-EEE-HHH
T ss_pred             HHHHHHHCCCEEEcchh
Confidence            66677789998776543

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=96.32  E-value=0.031  Score=57.14  Aligned_cols=131  Identities=20%  Similarity=0.197  Sum_probs=85.9

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH------------------HHHHHHHHhcCCccccccccccC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE------------------RAKSLASDVMGAARPFEDILNFQ  360 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~------------------~a~~la~~~~~~~~~~~~l~~~~  360 (454)
                      ..++|++|.|-|.|.+|+-++..|.+.|++|+.++-+..                  +.+++++.++.+.++-+++-   
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~---  279 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELL---  279 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccc---
Confidence            458999999999999999999999999998888776655                  55556665555544444442   


Q ss_pred             CCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHH---------HHHHH
Q 012866          361 PEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVE---------MFLRQ  428 (454)
Q Consensus       361 ~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~---------mlv~Q  428 (454)
                      ..++||++-|.--+.        |..+   .|.. .+|..-.-+|...+-.+.-.++|+-++++.-         -|-++
T Consensus       280 ~~~cDIl~PcA~~n~--------I~~~na~~l~a-k~V~EgAN~P~t~eA~~i~~erGIl~~PD~laNAGGV~vS~~E~~  350 (411)
T COG0334         280 EVDCDILIPCALENV--------ITEDNADQLKA-KIVVEGANGPTTPEADEILLERGILVVPDILANAGGVIVSYLEWV  350 (411)
T ss_pred             cccCcEEcccccccc--------cchhhHHHhhh-cEEEeccCCCCCHHHHHHHHHCCCEEcChhhccCcCeeeehHHHH
Confidence            246899885553221        3322   2333 3888988888776666666688875554332         22333


Q ss_pred             HHHHHHHhcCCCC
Q 012866          429 AIGQFNLFTGKEA  441 (454)
Q Consensus       429 a~~~f~lw~g~~~  441 (454)
                      .-.|-..|+..+.
T Consensus       351 qn~~~~~wt~eev  363 (411)
T COG0334         351 QNAQGLYWTEEEV  363 (411)
T ss_pred             hhcccCccCHHHH
Confidence            4455556765443

>PLN02858 fructose-bisphosphate aldolase

Probab=96.31  E-value=0.006  Score=72.27  Aligned_cols=109  Identities=13%  Similarity=0.062  Sum_probs=72.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      +++.+||.|-||.+++..|...|++|+++||+.++++.+++. +...  .++..+ ...++|+||.+.|-.-  ......
T Consensus       325 ~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-Ga~~--~~s~~e-~~~~aDvVi~~V~~~~--~v~~Vl  398 (1378)
T PLN02858        325 KRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENA-GGLA--GNSPAE-VAKDVDVLVIMVANEV--QAENVL  398 (1378)
T ss_pred             CeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEecCChH--HHHHHH
Confidence            789999999999999999999999999999999999888764 2211  122222 2456899998887321  000110


Q ss_pred             CC-h---hcccCCcEEEEEecC-CCCC-HHHHHHHH--CCCce
Q 012866          384 VS-E---ETLRDYQLVFDAVYT-PRKT-RLLKDAEA--AGAII  418 (454)
Q Consensus       384 i~-~---~~l~~~~~v~D~~y~-P~~T-~ll~~A~~--~G~~~  418 (454)
                      +. .   ..+.++.+++|+.-. |..+ .+-+++++  +|+.+
T Consensus       399 ~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~  441 (1378)
T PLN02858        399 FGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKL  441 (1378)
T ss_pred             hchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEE
Confidence            11 1   224677899999875 4444 34455556  66543

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=96.29  E-value=0.0034  Score=57.07  Aligned_cols=64  Identities=22%  Similarity=0.159  Sum_probs=48.3

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---ccccCCCCccEEEECCCC
Q 012866          306 FVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNFQPEKGAILANATPL  373 (454)
Q Consensus       306 vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~~~~~~divInat~~  373 (454)
                      |+|+|| |.+|+.++..|.+.|.+|+++.|+++++++   .-+.+.  .++.+   +.+ .+.++|.||++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~-al~~~d~vi~~~~~   70 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKA-ALKGADAVIHAAGP   70 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHH-HHTTSSEEEECCHS
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhh-hhhhcchhhhhhhh
Confidence            689996 999999999999999999999999998877   112111  23333   233 45689999998864

...

>PRK06180 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.018  Score=56.08  Aligned_cols=72  Identities=25%  Similarity=0.200  Sum_probs=51.7

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divI  368 (454)
                      +++++|.|+ ||+|++++..|.+.|++|+++.|+.++.+.+.+..+...    .++.+   +...      .....|+||
T Consensus         4 ~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~~~d~vv   83 (277)
T PRK06180          4 MKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTDFDAIDAVVADAEATFGPIDVLV   83 (277)
T ss_pred             CCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            578999996 799999999999999999999999998888766543221    12211   1110      123579999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      |+....
T Consensus        84 ~~ag~~   89 (277)
T PRK06180         84 NNAGYG   89 (277)
T ss_pred             ECCCcc
Confidence            987654

>PRK12367 short chain dehydrogenase; Provisional

Probab=96.28  E-value=0.0074  Score=58.18  Aligned_cols=74  Identities=16%  Similarity=0.180  Sum_probs=48.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccc---cccccCCCCccEEEECCCC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFE---DILNFQPEKGAILANATPL  373 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~divInat~~  373 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.....+.........  .++.   ++.+ ...+.|++||+...
T Consensus        11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~iDilVnnAG~   89 (245)
T PRK12367         11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINNSESNDESPNEWIKWECGKEESLDK-QLASLDVLILNHGI   89 (245)
T ss_pred             hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhhhhhhccCCCeEEEeeCCCHHHHHH-hcCCCCEEEECCcc
Confidence            467899999997 699999999999999999999998632211111111111  1221   2222 34568999998764


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      +
T Consensus        90 ~   90 (245)
T PRK12367         90 N   90 (245)
T ss_pred             C
Confidence            3

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.27  E-value=0.024  Score=59.62  Aligned_cols=34  Identities=15%  Similarity=0.252  Sum_probs=30.7

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +..++|+|.||+|++++..|.++|++|+++++..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            4579999999999999999999999999999754

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.27  E-value=0.016  Score=57.85  Aligned_cols=72  Identities=21%  Similarity=0.272  Sum_probs=52.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-c------ccccccccCCCCccEEEECCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-R------PFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-~------~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ++.|||+|.+|.++++.|+..|.  +|.+++|+.++++..+.++.... .      ...+.+  .+.++|++|.|.+...
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~--~l~~aDiViita~~~~   79 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYA--DCKGADVVVITAGANQ   79 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHH--HhCCCCEEEEccCCCC
Confidence            58999999999999999999994  89999999988876555443211 0      011222  3578999999998765


Q ss_pred             CCC
Q 012866          376 HPN  378 (454)
Q Consensus       376 ~p~  378 (454)
                      .|.
T Consensus        80 ~~~   82 (308)
T cd05292          80 KPG   82 (308)
T ss_pred             CCC
Confidence            543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.26  E-value=0.023  Score=60.57  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=32.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +.+++++|+|.|++|++++..|.++|++|++++...
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            457899999999999999999999999999999654

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.25  E-value=0.12  Score=53.07  Aligned_cols=190  Identities=22%  Similarity=0.282  Sum_probs=106.3

Q ss_pred             EecCCCCcccCHHHHHHHHHh-cCCCceEEecccC---CHHHHHHhcCCCCCCEEEe---ccCchHHHHhhhhhcCHhHh
Q 012866          178 LISKPVGHSKGPILHNPTFRH-VNYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSV---GFPYKEAVMKFCDEVHPLAQ  250 (454)
Q Consensus       178 liG~pv~hS~SP~~hn~~f~~-~gl~~~y~~~~~~---~~~~~~~~l~~~~~~G~~V---T~P~K~~v~~~~d~~~~~A~  250 (454)
                      +-|-||..-+.     .+|+. -|+|..=+.+++.   .+.++++.+ .+.|.|+|+   -.|-+..+-..+.+-     
T Consensus        97 ~ag~pVmeGKa-----~Lfk~faGid~~pI~ld~~~~~ei~~~Vkal-~p~FgginLedi~ap~cf~ie~~lr~~-----  165 (432)
T COG0281          97 LAGKPVMEGKA-----VLFKAFAGIDVLPIELDVGTNNEIIEFVKAL-EPTFGGINLEDIDAPRCFAIEERLRYR-----  165 (432)
T ss_pred             ccCcchhhhHH-----HHHHHhcCCCceeeEeeCCChHHHHHHHHHh-hhcCCCcceeecccchhhHHHHHHhhc-----
Confidence            45566666554     23433 4688654555553   466677766 567999986   345444443333221     


Q ss_pred             HccceeEEEEeCCCCeEEEeeccH-HHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC--
Q 012866          251 AIAAVNTIIRRPSDGKLIGYNTDC-EASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA--  327 (454)
Q Consensus       251 ~igavNTi~~~~~~g~l~G~NTD~-~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~--  327 (454)
                          .|.=++.+ |  .+|+-.-. .|++++|+-             .+..++..++++.|||-+|-+++..|...|+  
T Consensus       166 ----~~IPvFhD-D--qqGTaiv~lA~llnalk~-------------~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~  225 (432)
T COG0281         166 ----MNIPVFHD-D--QQGTAIVTLAALLNALKL-------------TGKKLKDQKIVINGAGAAGIAIADLLVAAGVKE  225 (432)
T ss_pred             ----CCCCcccc-c--ccHHHHHHHHHHHHHHHH-------------hCCCccceEEEEeCCcHHHHHHHHHHHHhCCCc
Confidence                22223331 2  23322222 123444431             2467889999999999999999999999998  


Q ss_pred             -eEEEEeCCH----HHH--------HHHHHHhcCCcccccccc-ccCCCCccEEEECCCCCCCCCCCCCCCChhcc---c
Q 012866          328 -RVVIFDIDF----ERA--------KSLASDVMGAARPFEDIL-NFQPEKGAILANATPLGMHPNTDRVPVSEETL---R  390 (454)
Q Consensus       328 -~v~i~nRt~----~~a--------~~la~~~~~~~~~~~~l~-~~~~~~~divInat~~g~~p~~~~~~i~~~~l---~  390 (454)
                       +|++++|.-    .+.        .+.+.+      ..++.. +....++|++|-++..|.        +.++++   .
T Consensus       226 ~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~------~~~~~~~~~~~~~adv~iG~S~~G~--------~t~e~V~~Ma  291 (432)
T COG0281         226 ENIFVVDRKGLLYDGREDLTMNQKKYAKAIE------DTGERTLDLALAGADVLIGVSGVGA--------FTEEMVKEMA  291 (432)
T ss_pred             ccEEEEecCCcccCCCcccccchHHHHHHHh------hhccccccccccCCCEEEEcCCCCC--------cCHHHHHHhc
Confidence             699999851    110        011110      011111 114578999999887653        444543   3


Q ss_pred             CCcEEEEEec-CCCCCHHHHHHHHC
Q 012866          391 DYQLVFDAVY-TPRKTRLLKDAEAA  414 (454)
Q Consensus       391 ~~~~v~D~~y-~P~~T~ll~~A~~~  414 (454)
                      ++.++|=+.- .|+-+|  +++++.
T Consensus       292 ~~PiIfalaNP~pEi~P--e~a~~~  314 (432)
T COG0281         292 KHPIIFALANPTPEITP--EDAKEW  314 (432)
T ss_pred             cCCEEeecCCCCccCCH--HHHhhc
Confidence            4567777752 133344  444444

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.24  E-value=0.023  Score=59.94  Aligned_cols=35  Identities=14%  Similarity=0.139  Sum_probs=30.7

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      .+|+++|+|.|..|++++..|.. |++|++++...+
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~   39 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKA   39 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCC
Confidence            47899999999999999999994 999999996543

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=96.22  E-value=0.0071  Score=62.52  Aligned_cols=35  Identities=26%  Similarity=0.422  Sum_probs=31.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||.|..++..|+..|+ +|+|++.+
T Consensus        40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D   75 (392)
T PRK07878         40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD   75 (392)
T ss_pred             HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence            457899999999999999999999999 99998864

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=96.20  E-value=0.014  Score=57.81  Aligned_cols=38  Identities=26%  Similarity=0.305  Sum_probs=35.0

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS  341 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~  341 (454)
                      ++|.|||+|-||.+++..|+..|.+|++++++.++.+.
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~   42 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSR   42 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence            57999999999999999999999999999999987653

>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed

Probab=96.20  E-value=0.021  Score=54.11  Aligned_cols=74  Identities=27%  Similarity=0.389  Sum_probs=53.7

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +++++++|.|+ |+.|++++..|.+.|+.|.+..|+.++.+++...++...    .++.+   +...      .....|+
T Consensus         4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (245)
T PRK12936          4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEKLEALAAELGERVKIFPANLSDRDEVKALGQKAEADLEGVDI   83 (245)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            56789999995 799999999999999999999999998888876654321    12221   1110      1245799


Q ss_pred             EEECCCCC
Q 012866          367 LANATPLG  374 (454)
Q Consensus       367 vInat~~g  374 (454)
                      ||++....
T Consensus        84 vi~~ag~~   91 (245)
T PRK12936         84 LVNNAGIT   91 (245)
T ss_pred             EEECCCCC
Confidence            99997653

>PLN02477 glutamate dehydrogenase

Probab=96.19  E-value=0.071  Score=55.22  Aligned_cols=130  Identities=21%  Similarity=0.336  Sum_probs=81.7

Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeCC----------HHHHH
Q 012866          272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID----------FERAK  340 (454)
Q Consensus       272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nRt----------~~~a~  340 (454)
                      .-+.|...+++..+..         .+.+++|++|+|.|.|.+|+.++..|.+.|++|+ |.+.+          .+...
T Consensus       184 aTg~Gv~~~~~~~~~~---------~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~  254 (410)
T PLN02477        184 ATGRGVVFATEALLAE---------HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALR  254 (410)
T ss_pred             cchHHHHHHHHHHHHH---------cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHH
Confidence            3467777777776652         2357899999999999999999999999999776 77776          55554


Q ss_pred             HHHHHhcC-------CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcc--cCCcEEEEEecCCCCCHHHHH-
Q 012866          341 SLASDVMG-------AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL--RDYQLVFDAVYTPRKTRLLKD-  410 (454)
Q Consensus       341 ~la~~~~~-------~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l--~~~~~v~D~~y~P~~T~ll~~-  410 (454)
                      +..++.+.       ..++-+++   ...++||+|-|.--+.        |..+..  -..++|+.-.-+|. |+--.+ 
T Consensus       255 ~~k~~~g~l~~~~~a~~i~~~e~---l~~~~DvliP~Al~~~--------I~~~na~~i~ak~I~egAN~p~-t~ea~~~  322 (410)
T PLN02477        255 KHVAEGGGLKGFPGGDPIDPDDI---LVEPCDVLIPAALGGV--------INKENAADVKAKFIVEAANHPT-DPEADEI  322 (410)
T ss_pred             HHHHhcCchhccccceEecCccc---eeccccEEeecccccc--------CCHhHHHHcCCcEEEeCCCCCC-CHHHHHH
Confidence            43332221       11122222   2247899986653221        333221  14578889988887 653333 


Q ss_pred             HHHCCCceeccH
Q 012866          411 AEAAGAIIVSGV  422 (454)
Q Consensus       411 A~~~G~~~~~Gl  422 (454)
                      -+++|+.+++..
T Consensus       323 L~~rGI~~~PD~  334 (410)
T PLN02477        323 LRKKGVVVLPDI  334 (410)
T ss_pred             HHHCCcEEEChH
Confidence            345777665543

>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.19  E-value=0.018  Score=55.67  Aligned_cols=73  Identities=22%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCCc---ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~~---~~~~~---l~~~------~~~  362 (454)
                      +++|.++|.|++   |+|++++..|++.|++|++..|+.   +.+++++++++...   +++.+   ++.+      ...
T Consensus         6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~~~~~~~g   85 (260)
T PRK06603          6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFDDIKEKWG   85 (260)
T ss_pred             cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHHHHHHHcC
Confidence            568999999985   799999999999999999988874   23444544443221   12221   1110      134


Q ss_pred             CccEEEECCCC
Q 012866          363 KGAILANATPL  373 (454)
Q Consensus       363 ~~divInat~~  373 (454)
                      ..|++||+...
T Consensus        86 ~iDilVnnag~   96 (260)
T PRK06603         86 SFDFLLHGMAF   96 (260)
T ss_pred             CccEEEEcccc
Confidence            68999996643

>PRK07411 hypothetical protein; Validated

Probab=96.19  E-value=0.0071  Score=62.48  Aligned_cols=35  Identities=31%  Similarity=0.497  Sum_probs=31.9

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D   71 (390)
T PRK07411         36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD   71 (390)
T ss_pred             HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            457899999999999999999999999 99998864

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.17  E-value=0.013  Score=62.59  Aligned_cols=40  Identities=30%  Similarity=0.390  Sum_probs=36.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      -++|.|||+|-||+.|+..|+..|.+|++++|+++++++.
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~   44 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARA   44 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            3679999999999999999999999999999999987653

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK07825 short chain dehydrogenase; Provisional

Probab=96.17  E-value=0.013  Score=56.77  Aligned_cols=73  Identities=27%  Similarity=0.279  Sum_probs=53.8

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCc--ccccc---c-------cccCCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAA--RPFED---I-------LNFQPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~~~--~~~~~---l-------~~~~~~~~di  366 (454)
                      +++++++|+|+ ||.|++++..|.+.|++|.++.|+.++++++.+.++ ...  +++.+   +       .+ .....|+
T Consensus         3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~-~~~~id~   81 (273)
T PRK07825          3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELGLVVGGPLDVTDPASFAAFLDAVEA-DLGPIDV   81 (273)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEccCCCHHHHHHHHHHHHH-HcCCCCE
Confidence            45789999996 799999999999999999999999999888877664 211  22222   1       11 1245799


Q ss_pred             EEECCCCC
Q 012866          367 LANATPLG  374 (454)
Q Consensus       367 vInat~~g  374 (454)
                      +||+...+
T Consensus        82 li~~ag~~   89 (273)
T PRK07825         82 LVNNAGVM   89 (273)
T ss_pred             EEECCCcC
Confidence            99987653

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.17  E-value=0.014  Score=48.93  Aligned_cols=67  Identities=30%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCC
Q 012866          306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       306 vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~  372 (454)
                      ++|+|.|..|+.++..|.+.+.+|+++++++++.+++.++.-.    ...+.+.+.+..+.+++.+|-+|+
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~   71 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTD   71 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccC
Confidence            6899999999999999999666999999999999888765411    111222333334677899988886

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.17  E-value=0.018  Score=58.29  Aligned_cols=71  Identities=15%  Similarity=0.140  Sum_probs=51.3

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHHhcCCcccccc--ccc-cCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI---DFERAKSLASDVMGAARPFED--ILN-FQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nR---t~~~a~~la~~~~~~~~~~~~--l~~-~~~~~~divInat~~  373 (454)
                      .+++|+|+|+|++|..++..++..|++|++++|   +.++ .+++++++...+...+  +.+ .....+|++|+++..
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~-~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~  248 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPK-ADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGV  248 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHH-HHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCC
Confidence            578999999999999999988899999999998   4555 4477788765432211  100 012458999999863

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=96.16  E-value=0.022  Score=54.26  Aligned_cols=36  Identities=31%  Similarity=0.476  Sum_probs=33.0

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +++|+++|+|+ ||+|++++..|.+.|++|++++|+.
T Consensus         3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            57899999997 6999999999999999999999975

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>PRK08085 gluconate 5-dehydrogenase; Provisional

Probab=96.15  E-value=0.013  Score=56.13  Aligned_cols=48  Identities=35%  Similarity=0.526  Sum_probs=42.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+++|++||+|+ ||.|++++..|.+.|++|++.+|+.++.+++.+++.
T Consensus         6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~   54 (254)
T PRK08085          6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLR   54 (254)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHH
Confidence            467899999996 699999999999999999999999988888776653

>PRK09291 short chain dehydrogenase; Provisional

Probab=96.15  E-value=0.016  Score=55.47  Aligned_cols=71  Identities=18%  Similarity=0.225  Sum_probs=50.0

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---C--c--ccccc---ccccCCCCccEEEECC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---A--A--RPFED---ILNFQPEKGAILANAT  371 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~--~--~~~~~---l~~~~~~~~divInat  371 (454)
                      +++++|.|+ ||.|++++..|.+.|++|++..|+.++++++.+....   .  .  .++.+   +........|+||++.
T Consensus         2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~id~vi~~a   81 (257)
T PRK09291          2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKLDLTDAIDRAQAAEWDVDVLLNNA   81 (257)
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEeeCCCHHHHHHHhcCCCCEEEECC
Confidence            468999996 7999999999999999999999998887777654321   1  1  12222   1111113689999987


Q ss_pred             CC
Q 012866          372 PL  373 (454)
Q Consensus       372 ~~  373 (454)
                      ..
T Consensus        82 g~   83 (257)
T PRK09291         82 GI   83 (257)
T ss_pred             Cc
Confidence            54

>PRK09186 flagellin modification protein A; Provisional

Probab=96.10  E-value=0.014  Score=55.81  Aligned_cols=45  Identities=31%  Similarity=0.431  Sum_probs=40.4

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++|+++|.|+ ||.|++++..|.+.|++|.+++|+.++++++++++
T Consensus         3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l   48 (256)
T PRK09186          3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESL   48 (256)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHH
Confidence            5789999996 69999999999999999999999999988877665

>PRK08703 short chain dehydrogenase; Provisional

Probab=96.10  E-value=0.015  Score=55.20  Aligned_cols=46  Identities=20%  Similarity=0.380  Sum_probs=41.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++++|+|+ ||.|++++..|.+.|++|++++|+.++++++.+++
T Consensus         4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l   50 (239)
T PRK08703          4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAI   50 (239)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHH
Confidence            67899999996 79999999999999999999999999888877665

>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.09  E-value=0.016  Score=56.17  Aligned_cols=74  Identities=15%  Similarity=0.204  Sum_probs=48.5

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCCc---ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAA---RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~~---~~~~~---l~~~------~~~  362 (454)
                      +++|.++|.|+   +|+|++++..|++.|++|++..|+.   ++++++.++.+...   +++.+   ++.+      ...
T Consensus         4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   83 (261)
T PRK08690          4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFADLGKHWD   83 (261)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHHHHHHhC
Confidence            56899999994   5999999999999999998886653   34444544433211   12221   1110      124


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|++||+...+
T Consensus        84 ~iD~lVnnAG~~   95 (261)
T PRK08690         84 GLDGLVHSIGFA   95 (261)
T ss_pred             CCcEEEECCccC
Confidence            689999998654

>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.09  E-value=0.014  Score=52.77  Aligned_cols=49  Identities=27%  Similarity=0.464  Sum_probs=45.4

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG  348 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~  348 (454)
                      .+.|+.+++.|+| |+|++++.+|++.|++|.-+.|+++...+|.++...
T Consensus         4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~p~   53 (245)
T KOG1207|consen    4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKETPS   53 (245)
T ss_pred             cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhCCc
Confidence            4678999999999 999999999999999999999999999999988765

>PLN02780 ketoreductase/ oxidoreductase

Probab=96.09  E-value=0.013  Score=58.92  Aligned_cols=45  Identities=20%  Similarity=0.471  Sum_probs=41.1

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .|+.++|.|| ||.|++++..|++.|++|.+++|+.++.+++++++
T Consensus        52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l   97 (320)
T PLN02780         52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSI   97 (320)
T ss_pred             cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHH
Confidence            5899999996 69999999999999999999999999998887765

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.09  E-value=0.028  Score=58.53  Aligned_cols=105  Identities=18%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC-ccccccc----------cc-cCCCCccEEEECC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA-ARPFEDI----------LN-FQPEKGAILANAT  371 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~-~~~~~~l----------~~-~~~~~~divInat  371 (454)
                      +++.|||.|-+|..++..|++.|.+|+.++|++++.+.+....-.. ...++++          .. ...+++|++|-|.
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            5799999999999999999999999999999999988754211000 0001100          00 0134689999999


Q ss_pred             CCCCCCCCCC--CCCC---h---hcccCCcEEEEEecCCC-CCHHH
Q 012866          372 PLGMHPNTDR--VPVS---E---ETLRDYQLVFDAVYTPR-KTRLL  408 (454)
Q Consensus       372 ~~g~~p~~~~--~~i~---~---~~l~~~~~v~D~~y~P~-~T~ll  408 (454)
                      |....++...  ..+.   .   ..++++.+|++..-.|. .|..+
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~  129 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQM  129 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHH
Confidence            8654222110  0111   0   12467788888877655 34333

>PRK07063 short chain dehydrogenase; Provisional

Probab=96.09  E-value=0.015  Score=55.90  Aligned_cols=47  Identities=34%  Similarity=0.492  Sum_probs=42.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      +++|+++|.|+ ||+|++++..|.+.|++|+++.|+.++.+++++++.
T Consensus         5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~   52 (260)
T PRK07063          5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIA   52 (260)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            67899999996 699999999999999999999999999888877663

>PRK07774 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.016  Score=55.17  Aligned_cols=46  Identities=35%  Similarity=0.567  Sum_probs=40.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++++|+|+ |++|++++.+|.+.|++|++++|+.+..+.+.+++
T Consensus         4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~   50 (250)
T PRK07774          4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQI   50 (250)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56789999997 89999999999999999999999988777766554

>PRK06125 short chain dehydrogenase; Provisional

Probab=96.07  E-value=0.016  Score=55.80  Aligned_cols=73  Identities=23%  Similarity=0.309  Sum_probs=52.8

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----Cc----ccccccc---cc--CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----AA----RPFEDIL---NF--QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~~----~~~~~l~---~~--~~~~~di  366 (454)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++.+++..    ..    .++.+..   ..  .....|+
T Consensus         5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            56899999997 6999999999999999999999999988887665431    11    1222111   10  1346899


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +|++...
T Consensus        85 lv~~ag~   91 (259)
T PRK06125         85 LVNNAGA   91 (259)
T ss_pred             EEECCCC
Confidence            9998753

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.07  E-value=0.038  Score=58.22  Aligned_cols=32  Identities=31%  Similarity=0.279  Sum_probs=29.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +++|+|.|++|++++..|.+.|++|+++++..
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~   33 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND   33 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            58999999999999999999999999999764

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=96.06  E-value=0.014  Score=58.31  Aligned_cols=70  Identities=34%  Similarity=0.443  Sum_probs=54.6

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      +.-+.||+++|.|-|-.||.++..|..+|++|.|+.-++-+|-+.+=+ |..+.++++    ....+|++|.||.
T Consensus       204 n~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~Md-Gf~V~~m~~----Aa~~gDifiT~TG  273 (420)
T COG0499         204 NVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMD-GFRVMTMEE----AAKTGDIFVTATG  273 (420)
T ss_pred             ceeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhc-CcEEEEhHH----hhhcCCEEEEccC
Confidence            466889999999999999999999999999999999999887654321 223444444    3345799998884

>PRK07478 short chain dehydrogenase; Provisional

Probab=96.05  E-value=0.016  Score=55.47  Aligned_cols=46  Identities=30%  Similarity=0.439  Sum_probs=41.2

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~   50 (254)
T PRK07478          4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEI   50 (254)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56789999996 69999999999999999999999999988887665

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.04  E-value=0.022  Score=57.41  Aligned_cols=93  Identities=15%  Similarity=0.172  Sum_probs=61.3

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc--ccccc--CCCCccEEEECCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE--DILNF--QPEKGAILANATPLGM  375 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~--~l~~~--~~~~~divInat~~g~  375 (454)
                      .+++|+|+|+|++|.+++..++.+|+ +|+++.+++++.+ +++++|... ++..  ++.+.  ....+|++|+++....
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~  247 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLS-LAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPS  247 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHH-HHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHH
Confidence            57899999999999999998889999 7999999988864 667787643 2221  11110  1124899999986310


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEec
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAVY  400 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~y  400 (454)
                           ...-....++++..++.+-.
T Consensus       248 -----~~~~~~~~l~~~G~iv~~G~  267 (343)
T PRK09880        248 -----SINTCLEVTRAKGVMVQVGM  267 (343)
T ss_pred             -----HHHHHHHHhhcCCEEEEEcc
Confidence                 00011234666666666654

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.04  E-value=0.083  Score=55.26  Aligned_cols=130  Identities=22%  Similarity=0.212  Sum_probs=81.4

Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEE-e----------CCHHHHH
Q 012866          272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIF-D----------IDFERAK  340 (454)
Q Consensus       272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~-n----------Rt~~~a~  340 (454)
                      .-+.|...+++..+.+         .+.+++|++|.|.|.|.+|+.++..|.+.|++|+.+ +          -+.+...
T Consensus       210 aTg~Gv~~~~~~~~~~---------~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~  280 (445)
T PRK09414        210 ATGYGLVYFAEEMLKA---------RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLK  280 (445)
T ss_pred             cccHHHHHHHHHHHHh---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHH
Confidence            4566777777766652         235689999999999999999999999999977655 5          3555444


Q ss_pred             HHHHHhc-----------CCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---ccc--CCcEEEEEecCCCC
Q 012866          341 SLASDVM-----------GAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLR--DYQLVFDAVYTPRK  404 (454)
Q Consensus       341 ~la~~~~-----------~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~--~~~~v~D~~y~P~~  404 (454)
                      +..+...           ...++-+++   ...++||+|-|+.-+.        +..+   .+.  ..++|+.-.-+|. 
T Consensus       281 ~~k~~~~~~l~~~~~~~~~~~i~~~~i---~~~d~DVliPaAl~n~--------It~~~a~~i~~~~akiIvEgAN~p~-  348 (445)
T PRK09414        281 EIKEVRRGRISEYAEEFGAEYLEGGSP---WSVPCDIALPCATQNE--------LDEEDAKTLIANGVKAVAEGANMPS-  348 (445)
T ss_pred             HHHHhcCCchhhhhhhcCCeecCCccc---cccCCcEEEecCCcCc--------CCHHHHHHHHHcCCeEEEcCCCCCC-
Confidence            4332211           111111222   2246899998886432        2322   232  4578999998887 


Q ss_pred             CHH-HHHHHHCCCceeccH
Q 012866          405 TRL-LKDAEAAGAIIVSGV  422 (454)
Q Consensus       405 T~l-l~~A~~~G~~~~~Gl  422 (454)
                      |+- -+.-+++|+.+++..
T Consensus       349 t~~A~~~L~~rGI~~vPD~  367 (445)
T PRK09414        349 TPEAIEVFLEAGVLFAPGK  367 (445)
T ss_pred             CHHHHHHHHHCCcEEECch
Confidence            543 233345777665543

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=96.03  E-value=0.02  Score=55.39  Aligned_cols=35  Identities=20%  Similarity=0.275  Sum_probs=30.6

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCC
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +++|.++|.|+   +|.|++++..|++.|++|++..|+
T Consensus         4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~   41 (258)
T PRK07370          4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLP   41 (258)
T ss_pred             cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecC
Confidence            56899999997   499999999999999999887653

>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]

Probab=96.03  E-value=0.019  Score=53.29  Aligned_cols=73  Identities=21%  Similarity=0.226  Sum_probs=53.0

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Ccccccccc------cc---CCCCccEE
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AARPFEDIL------NF---QPEKGAIL  367 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~~~~~~l~------~~---~~~~~div  367 (454)
                      ..|.++||.|.| |+|++.+..+.++|.+|.|++|+.++.++.......   .++++.|..      ++   .-.+-+++
T Consensus         3 ~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t~v~Dv~d~~~~~~lvewLkk~~P~lNvl   82 (245)
T COG3967           3 TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHTEVCDVADRDSRRELVEWLKKEYPNLNVL   82 (245)
T ss_pred             ccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchheeeecccchhhHHHHHHHHHhhCCchhee
Confidence            346789999865 999999999999999999999999998877655432   223333321      11   22456899


Q ss_pred             EECCCC
Q 012866          368 ANATPL  373 (454)
Q Consensus       368 Inat~~  373 (454)
                      ||+...
T Consensus        83 iNNAGI   88 (245)
T COG3967          83 INNAGI   88 (245)
T ss_pred             eecccc
Confidence            998754

>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=96.03  E-value=0.022  Score=54.68  Aligned_cols=37  Identities=27%  Similarity=0.529  Sum_probs=33.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.
T Consensus         5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~   42 (251)
T PRK12481          5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE   42 (251)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch
Confidence            367899999996 5999999999999999999999864

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.02  E-value=0.019  Score=57.77  Aligned_cols=75  Identities=20%  Similarity=0.231  Sum_probs=52.2

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------C-ccc-cccccccCCCCccEEEECC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG-------A-ARP-FEDILNFQPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~-------~-~~~-~~~l~~~~~~~~divInat  371 (454)
                      +.+++.|||+|.+|.++++.++..|. +|+++++++++++.-+-++..       . .+. ..+.+  .+.++|+||+|.
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~~--~l~~aDiVI~ta   82 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNYE--DIAGSDVVIVTA   82 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCHH--HhCCCCEEEECC
Confidence            34789999999999999999999996 999999998865432222111       1 011 12332  357899999988


Q ss_pred             CCCCCCC
Q 012866          372 PLGMHPN  378 (454)
Q Consensus       372 ~~g~~p~  378 (454)
                      ..+-.|.
T Consensus        83 g~~~~~~   89 (321)
T PTZ00082         83 GLTKRPG   89 (321)
T ss_pred             CCCCCCC
Confidence            7655443

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.02  E-value=0.11  Score=50.31  Aligned_cols=130  Identities=18%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHH
Q 012866          272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAK  340 (454)
Q Consensus       272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nR----------t~~~a~  340 (454)
                      --+.|...+++..+..         .+.+++|++|+|-|-|.+|+.++..|.++|++|+ |.+.          +.+..+
T Consensus        16 aTg~Gv~~~~~~~~~~---------~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~   86 (254)
T cd05313          16 ATGYGLVYFVEEMLKD---------RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLA   86 (254)
T ss_pred             hhHHHHHHHHHHHHHh---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHH
Confidence            3466777777776652         2467899999999999999999999999999766 6552          223332


Q ss_pred             HHHHH---hc------------CCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---ccc--CCcEEEEEec
Q 012866          341 SLASD---VM------------GAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLR--DYQLVFDAVY  400 (454)
Q Consensus       341 ~la~~---~~------------~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~--~~~~v~D~~y  400 (454)
                      .+.+.   -+            ...++-+++   ....+||+|-|.--+        .|..+   .+.  ..++|+.-.-
T Consensus        87 ~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~---~~~~~DIliPcAl~~--------~I~~~na~~i~~~~ak~I~EgAN  155 (254)
T cd05313          87 ELKEIKEVRRGRVSEYAKKYGTAKYFEGKKP---WEVPCDIAFPCATQN--------EVDAEDAKLLVKNGCKYVAEGAN  155 (254)
T ss_pred             HHHHHHHhcCCcHHHHhhcCCCCEEeCCcch---hcCCCcEEEeccccc--------cCCHHHHHHHHHcCCEEEEeCCC
Confidence            22111   11            111111222   224689999665322        24433   342  4578999988


Q ss_pred             CCCCCH-HHHHHHHCCCceeccH
Q 012866          401 TPRKTR-LLKDAEAAGAIIVSGV  422 (454)
Q Consensus       401 ~P~~T~-ll~~A~~~G~~~~~Gl  422 (454)
                      +|. |+ --+.-+++|+.+++..
T Consensus       156 ~p~-t~~a~~~L~~rGI~vvPD~  177 (254)
T cd05313         156 MPC-TAEAIEVFRQAGVLFAPGK  177 (254)
T ss_pred             CCC-CHHHHHHHHHCCcEEECch
Confidence            886 54 2333346787665543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07062 short chain dehydrogenase; Provisional

Probab=96.02  E-value=0.017  Score=55.78  Aligned_cols=47  Identities=34%  Similarity=0.366  Sum_probs=41.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++|.++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         5 ~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   52 (265)
T PRK07062          5 QLEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARL   52 (265)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            467899999997 59999999999999999999999998877766554

>PRK06484 short chain dehydrogenase; Validated

Probab=96.01  E-value=0.016  Score=61.98  Aligned_cols=73  Identities=27%  Similarity=0.339  Sum_probs=54.2

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      .++|.++|.|+ +|+|++++..|.+.|++|+++.|+.++.++++++++...    +++.+   +..+      .....|+
T Consensus         3 ~~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (520)
T PRK06484          3 AQSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLGPDHHALAMDVSDEAQIREGFEQLHREFGRIDV   82 (520)
T ss_pred             CCCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHHHHHHHHHhCCCCE
Confidence            35789999997 599999999999999999999999999988888775432    12211   1110      1245799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        83 li~nag~   89 (520)
T PRK06484         83 LVNNAGV   89 (520)
T ss_pred             EEECCCc
Confidence            9998654

>PRK06172 short chain dehydrogenase; Provisional

Probab=96.01  E-value=0.017  Score=55.18  Aligned_cols=47  Identities=28%  Similarity=0.484  Sum_probs=40.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|+|+ ||.|++++..|.+.|++|++++|+.++.+++.+.+
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~   51 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALI   51 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            367899999996 69999999999999999999999998877766554

>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional

Probab=96.00  E-value=0.021  Score=55.28  Aligned_cols=73  Identities=16%  Similarity=0.177  Sum_probs=49.5

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeC---CHHHHHHHHHHhcCC-c--ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDI---DFERAKSLASDVMGA-A--RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nR---t~~~a~~la~~~~~~-~--~~~~~---l~~~------~~~  362 (454)
                      +++|.++|.|+   +|+|++++..|++.|++|++..|   +.++.+++.++++.. .  +++.+   +..+      ...
T Consensus         4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g   83 (260)
T PRK06997          4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALFASLGQHWD   83 (260)
T ss_pred             cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHHHHHHHHhC
Confidence            56899999994   59999999999999999988754   356666666655421 1  12211   1110      125


Q ss_pred             CccEEEECCCC
Q 012866          363 KGAILANATPL  373 (454)
Q Consensus       363 ~~divInat~~  373 (454)
                      ..|++||+...
T Consensus        84 ~iD~lvnnAG~   94 (260)
T PRK06997         84 GLDGLVHSIGF   94 (260)
T ss_pred             CCcEEEEcccc
Confidence            68999998754

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=96.00  E-value=0.011  Score=57.00  Aligned_cols=74  Identities=16%  Similarity=0.174  Sum_probs=51.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCCc--ccccc----ccccCC-CCccEEEEC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAA--RPFED----ILNFQP-EKGAILANA  370 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-~~~~--~~~~~----l~~~~~-~~~divIna  370 (454)
                      ..++++++|+|+ |+.|++++..|.+.|++|+.+.|+.++++++.... +...  .++.+    +.+ .+ .+.|+||++
T Consensus        14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~-~~~~~~d~vi~~   92 (251)
T PLN00141         14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVE-AIGDDSDAVICA   92 (251)
T ss_pred             cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHH-HhhcCCCEEEEC
Confidence            356789999996 89999999999999999999999988876553321 1111  12222    212 23 468999988


Q ss_pred             CCCC
Q 012866          371 TPLG  374 (454)
Q Consensus       371 t~~g  374 (454)
                      ++..
T Consensus        93 ~g~~   96 (251)
T PLN00141         93 TGFR   96 (251)
T ss_pred             CCCC
Confidence            7643

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.99  E-value=0.0052  Score=54.00  Aligned_cols=40  Identities=25%  Similarity=0.501  Sum_probs=33.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLAS  344 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~  344 (454)
                      +|+|+|+||.|..++..|...|+ ++++++.+.-....+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r   41 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNR   41 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhc
Confidence            48999999999999999999999 99999987544444433

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=95.98  E-value=0.16  Score=53.06  Aligned_cols=129  Identities=16%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeCC----------HHHHH
Q 012866          272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDID----------FERAK  340 (454)
Q Consensus       272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nRt----------~~~a~  340 (454)
                      -.+.|.+..++..+..         .+.+++|++|+|-|.|.+|..++..|.++|++|+ |.+.+          .++..
T Consensus       215 ATG~Gv~~~~~~~l~~---------~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~  285 (454)
T PTZ00079        215 ATGYGLVYFVLEVLKK---------LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLA  285 (454)
T ss_pred             ccHHHHHHHHHHHHHH---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHH
Confidence            4677888888776652         2357899999999999999999999999999766 77776          55553


Q ss_pred             HHHHH----------hc-----CCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc-----CCcEEEEEec
Q 012866          341 SLASD----------VM-----GAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR-----DYQLVFDAVY  400 (454)
Q Consensus       341 ~la~~----------~~-----~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~-----~~~~v~D~~y  400 (454)
                      .+.+.          +.     ...++-+++   ....+||++-|.--+        .|..+...     ...+|+.-.-
T Consensus       286 ~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~---~~~~cDI~iPcA~~n--------~I~~~~a~~l~~~~ak~V~EgAN  354 (454)
T PTZ00079        286 YLMDLKNVKRGRLKEYAKHSSTAKYVPGKKP---WEVPCDIAFPCATQN--------EINLEDAKLLIKNGCKLVAEGAN  354 (454)
T ss_pred             HHHHHHhhcCCcHHhhhhccCCcEEeCCcCc---ccCCccEEEeccccc--------cCCHHHHHHHHHcCCeEEEecCC
Confidence            33221          10     011111111   123589988654321        24433222     4578888887


Q ss_pred             CCCCCHHHHHHHHCCCceec
Q 012866          401 TPRKTRLLKDAEAAGAIIVS  420 (454)
Q Consensus       401 ~P~~T~ll~~A~~~G~~~~~  420 (454)
                      .|-...-.+.-+++|+.+++
T Consensus       355 ~p~t~eA~~~L~~~GI~~~P  374 (454)
T PTZ00079        355 MPTTIEATHLFKKNGVIFCP  374 (454)
T ss_pred             CCCCHHHHHHHHHCCcEEEC
Confidence            77533333333456664443

>PRK06720 hypothetical protein; Provisional

Probab=95.97  E-value=0.021  Score=51.84  Aligned_cols=47  Identities=34%  Similarity=0.641  Sum_probs=40.7

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .++++.++|.|++ |+|++++..|.+.|++|.+++|+.+.+++.++++
T Consensus        13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l   60 (169)
T PRK06720         13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEI   60 (169)
T ss_pred             ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4678999999975 8999999999999999999999988877665554

>PRK06484 short chain dehydrogenase; Validated

Probab=95.96  E-value=0.019  Score=61.33  Aligned_cols=74  Identities=27%  Similarity=0.339  Sum_probs=55.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      ...+|.++|.|+ ||+|++++..|.+.|++|++.+|+.++.++++++++...    .++.+   +..+      .....|
T Consensus       266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id  345 (520)
T PRK06484        266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGDEHLSVQADITDEAAVESAFAQIQARWGRLD  345 (520)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            356899999996 699999999999999999999999999999888775432    12221   1110      124579


Q ss_pred             EEEECCCC
Q 012866          366 ILANATPL  373 (454)
Q Consensus       366 ivInat~~  373 (454)
                      ++||+...
T Consensus       346 ~li~nAg~  353 (520)
T PRK06484        346 VLVNNAGI  353 (520)
T ss_pred             EEEECCCC
Confidence            99998754

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.96  E-value=0.051  Score=60.31  Aligned_cols=193  Identities=19%  Similarity=0.249  Sum_probs=106.7

Q ss_pred             HHHhc-CCCceEEecccCCHHHHHHhc--CCCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEee
Q 012866          195 TFRHV-NYNGIYVPMFVDDLKKFFSTY--SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYN  271 (454)
Q Consensus       195 ~f~~~-gl~~~y~~~~~~~~~~~~~~l--~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~N  271 (454)
                      +|+.+ |+|..=+.++.+|.++|++..  ..+.|.|+|.-==--...+..++++-+      ..|.-++.+ |  .+|+-
T Consensus        95 l~~~~~gid~~~i~~~~~d~de~v~~v~~~~p~~g~i~~ED~~~p~~f~i~~~~~~------~~~ip~f~D-D--~~GTa  165 (752)
T PRK07232         95 LFKKFAGIDVFDIEVDEEDPDKFIEAVAALEPTFGGINLEDIKAPECFYIEEKLRE------RMDIPVFHD-D--QHGTA  165 (752)
T ss_pred             HHHhhcCCCccccccCCCCHHHHHHHHHHhCCCccEEeeeecCCchHHHHHHHHHH------hcCCCeecc-c--cchHH
Confidence            34444 477433333446888888766  357899988632222223333333221      123333441 2  33332


Q ss_pred             ccHH-HHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC---eEEEEeCC----HHH---HH
Q 012866          272 TDCE-ASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FER---AK  340 (454)
Q Consensus       272 TD~~-G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~---~v~i~nRt----~~~---a~  340 (454)
                      .-.. |++++++-             .+..+++.++++.|||.+|-+++..|...|.   +|+++++.    .+|   ..
T Consensus       166 ~v~lA~l~na~~~-------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~  232 (752)
T PRK07232        166 IISAAALLNALEL-------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMD  232 (752)
T ss_pred             HHHHHHHHHHHHH-------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCccccc
Confidence            2222 23444431             1356788999999999999999999999998   69988863    111   11


Q ss_pred             HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcc---cCCcEEEEEecCCC--CCHHHHHHHHC-
Q 012866          341 SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL---RDYQLVFDAVYTPR--KTRLLKDAEAA-  414 (454)
Q Consensus       341 ~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l---~~~~~v~D~~y~P~--~T~ll~~A~~~-  414 (454)
                      ..-..|-.. ....+|.+ .++.+|++|-++..|        .+.++++   .+..++|=+. ||.  -||  ++|.+. 
T Consensus       233 ~~k~~~a~~-~~~~~l~~-~i~~~~v~iG~s~~g--------~~~~~~v~~M~~~piifals-NP~~E~~p--~~a~~~~  299 (752)
T PRK07232        233 EWKAAYAVD-TDARTLAE-AIEGADVFLGLSAAG--------VLTPEMVKSMADNPIIFALA-NPDPEITP--EEAKAVR  299 (752)
T ss_pred             HHHHHHhcc-CCCCCHHH-HHcCCCEEEEcCCCC--------CCCHHHHHHhccCCEEEecC-CCCccCCH--HHHHHhc
Confidence            111112111 12234544 456689999776533        2556654   3578898887 443  365  556655 


Q ss_pred             -CCceeccH
Q 012866          415 -GAIIVSGV  422 (454)
Q Consensus       415 -G~~~~~Gl  422 (454)
                       |+.+..|.
T Consensus       300 ~~~i~atGr  308 (752)
T PRK07232        300 PDAIIATGR  308 (752)
T ss_pred             CCEEEEECC
Confidence             35555554

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=95.96  E-value=0.023  Score=54.47  Aligned_cols=48  Identities=21%  Similarity=0.325  Sum_probs=42.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|+|+ |+.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   55 (256)
T PRK06124          7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAAL   55 (256)
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence            4578999999996 69999999999999999999999998887776655

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=95.95  E-value=0.016  Score=57.32  Aligned_cols=67  Identities=19%  Similarity=0.113  Sum_probs=47.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--------cc---cccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--------RP---FEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--------~~---~~~l~~~~~~~~divInat~~  373 (454)
                      +++|+|+|.+|.+++..|++.|.+|+++.| .++.+++.+. +...        ..   ..+..+ ....+|+||-|++.
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vilavk~   78 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRER-GLVIRSDHGDAVVPGPVITDPEE-LTGPFDLVILAVKA   78 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhC-CeEEEeCCCeEEecceeecCHHH-ccCCCCEEEEEecc
Confidence            589999999999999999999999999999 7777776542 2110        00   111112 23568999888875


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      .
T Consensus        79 ~   79 (305)
T PRK12921         79 Y   79 (305)
T ss_pred             c
Confidence            3

>PRK10538 malonic semialdehyde reductase; Provisional

Probab=95.93  E-value=0.029  Score=53.66  Aligned_cols=70  Identities=19%  Similarity=0.262  Sum_probs=50.9

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEEEC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILANA  370 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divIna  370 (454)
                      +++|+|+ ||.|++++..|.+.|++|++++|+.++++++...++...    .++.+   +.+.      ...+.|++|++
T Consensus         2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~~~~~~~~~id~vi~~   81 (248)
T PRK10538          2 IVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWRNIDVLVNN   81 (248)
T ss_pred             EEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEEC
Confidence            6899996 799999999999999999999999999888877654321    12221   1110      12368999998


Q ss_pred             CCCC
Q 012866          371 TPLG  374 (454)
Q Consensus       371 t~~g  374 (454)
                      ....
T Consensus        82 ag~~   85 (248)
T PRK10538         82 AGLA   85 (248)
T ss_pred             CCcc
Confidence            8643

>PRK09242 tropinone reductase; Provisional

Probab=95.93  E-value=0.02  Score=54.94  Aligned_cols=48  Identities=27%  Similarity=0.328  Sum_probs=42.7

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +.+++|+++|+|+ ||+|++++..|.+.|++|+++.|+.++++++.+++
T Consensus         5 ~~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l   53 (257)
T PRK09242          5 WRLDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDEL   53 (257)
T ss_pred             cccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            3577899999996 69999999999999999999999999988887665

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.93  E-value=0.02  Score=60.08  Aligned_cols=69  Identities=22%  Similarity=0.254  Sum_probs=53.0

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-----ccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-----PFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~divInat~~  373 (454)
                      +++|+|+|..|+.++..|.+.|.+|++++|++++.+++.+..+...+     +.+.+.+..+.++|.+|.+|+-
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            68999999999999999999999999999999999888764443221     1122333236779999998874

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.92  E-value=0.016  Score=58.15  Aligned_cols=70  Identities=17%  Similarity=0.198  Sum_probs=49.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCCc---ccc-------ccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAA---RPF-------EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-~~~~---~~~-------~~l~~~~~~~~divInat~~  373 (454)
                      ++.|||+|.+|.+++..|++.|.+|++++|+.+.++++.+.- +...   ..+       .++.+.....+|+||-|++.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks   81 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT   81 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence            488999999999999999999999999999998888886531 1110   001       11212012467999988875


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      .
T Consensus        82 ~   82 (326)
T PRK14620         82 Q   82 (326)
T ss_pred             H
Confidence            3

>PRK06197 short chain dehydrogenase; Provisional

Probab=95.90  E-value=0.018  Score=57.05  Aligned_cols=47  Identities=30%  Similarity=0.468  Sum_probs=40.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++|+++|.|+ ||+|++++..|++.|++|+++.|+.+++++..+++
T Consensus        13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l   60 (306)
T PRK06197         13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARI   60 (306)
T ss_pred             cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999996 79999999999999999999999998877665444

>PRK08324 short chain dehydrogenase; Validated

Probab=95.89  E-value=0.019  Score=63.74  Aligned_cols=75  Identities=32%  Similarity=0.438  Sum_probs=55.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc----ccccc---cccc------CCCC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA----RPFED---ILNF------QPEK  363 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~----~~~~~---l~~~------~~~~  363 (454)
                      .+.+++++|+|+ ||+|++++..|.+.|++|++++|+.++++++++.++.  ..    .++.+   +...      ....
T Consensus       419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~  498 (681)
T PRK08324        419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGG  498 (681)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            456899999995 8999999999999999999999999998888777643  11    12211   1110      1235


Q ss_pred             ccEEEECCCCC
Q 012866          364 GAILANATPLG  374 (454)
Q Consensus       364 ~divInat~~g  374 (454)
                      .|+||++....
T Consensus       499 iDvvI~~AG~~  509 (681)
T PRK08324        499 VDIVVSNAGIA  509 (681)
T ss_pred             CCEEEECCCCC
Confidence            79999988643

>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase

Probab=95.87  E-value=0.021  Score=57.33  Aligned_cols=72  Identities=13%  Similarity=0.207  Sum_probs=50.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhcCC---c--ccccc---ccccCCCCccEEEE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRG--ARVVIFDIDFERAKSLASDVMGA---A--RPFED---ILNFQPEKGAILAN  369 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G--~~v~i~nRt~~~a~~la~~~~~~---~--~~~~~---l~~~~~~~~divIn  369 (454)
                      +++++++|+|+ |+.|++++..|.+.|  .+|++++|+..+...+...+...   .  .++.+   +.+ ...+.|+||+
T Consensus         2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~l~~-~~~~iD~Vih   80 (324)
T TIGR03589         2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQKFPAPCLRFFIGDVRDKERLTR-ALRGVDYVVH   80 (324)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHHhCCCcEEEEEccCCCHHHHHH-HHhcCCEEEE
Confidence            35789999996 899999999999886  58999999877665555554321   1  12222   222 2456899999


Q ss_pred             CCCC
Q 012866          370 ATPL  373 (454)
Q Consensus       370 at~~  373 (454)
                      +...
T Consensus        81 ~Ag~   84 (324)
T TIGR03589        81 AAAL   84 (324)
T ss_pred             Cccc
Confidence            8754

This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.

>PRK07035 short chain dehydrogenase; Provisional

Probab=95.87  E-value=0.025  Score=54.10  Aligned_cols=48  Identities=25%  Similarity=0.452  Sum_probs=42.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++.+++
T Consensus         4 ~~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~   52 (252)
T PRK07035          4 FDLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI   52 (252)
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3577899999996 69999999999999999999999998888877765

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=95.85  E-value=0.02  Score=61.14  Aligned_cols=39  Identities=26%  Similarity=0.371  Sum_probs=36.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      ++|.|||+|-||+.|+..|+..|++|++++|+++.+++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~   46 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAA   46 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence            679999999999999999999999999999999987764

>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated

Probab=95.84  E-value=0.016  Score=54.80  Aligned_cols=46  Identities=41%  Similarity=0.694  Sum_probs=39.7

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++++|+|+ |+.|+.++..|.+.|.+|.+++|+.++.+.+...+
T Consensus         3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~   49 (246)
T PRK05653          3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAEL   49 (246)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHH
Confidence            34688999996 79999999999999999999999998877766554

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=95.84  E-value=0.025  Score=50.26  Aligned_cols=44  Identities=34%  Similarity=0.501  Sum_probs=38.5

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCC--HHHHHHHHHHhc
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDID--FERAKSLASDVM  347 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~-~v~i~nRt--~~~a~~la~~~~  347 (454)
                      |.++|+|+ ||+|++++.+|.+.|. .|.++.|+  .++++++..++.
T Consensus         1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~   48 (167)
T PF00106_consen    1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELK   48 (167)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccccccccccccc
Confidence            57999996 6999999999999988 89999999  788888877664

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK07890 short chain dehydrogenase; Provisional

Probab=95.82  E-value=0.022  Score=54.48  Aligned_cols=47  Identities=36%  Similarity=0.546  Sum_probs=41.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      +.+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.
T Consensus         3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   50 (258)
T PRK07890          3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEID   50 (258)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Confidence            45789999996 699999999999999999999999988888877653

>PRK07067 sorbitol dehydrogenase; Provisional

Probab=95.82  E-value=0.022  Score=54.68  Aligned_cols=73  Identities=37%  Similarity=0.380  Sum_probs=53.7

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +.+++++|+|+ ||.|++++..|++.|++|++++|+.++.+++.++++...    .++.+   +...      .....|+
T Consensus         4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~   83 (257)
T PRK07067          4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARARLAALEIGPAAIAVSLDVTRQDSIDRIVAAAVERFGGIDI   83 (257)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCCE
Confidence            56789999996 799999999999999999999999999888877664321    12211   1110      1245799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +|++...
T Consensus        84 li~~ag~   90 (257)
T PRK07067         84 LFNNAAL   90 (257)
T ss_pred             EEECCCc
Confidence            9998754

>PRK07097 gluconate 5-dehydrogenase; Provisional

Probab=95.82  E-value=0.025  Score=54.69  Aligned_cols=48  Identities=29%  Similarity=0.345  Sum_probs=42.1

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|+|+ ||+|++++..|++.|++|++.+|+.++.+++.+.+
T Consensus         6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~   54 (265)
T PRK07097          6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAY   54 (265)
T ss_pred             cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            4577899999997 59999999999999999999999998887776655

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.81  E-value=0.045  Score=52.71  Aligned_cols=113  Identities=19%  Similarity=0.225  Sum_probs=69.0

Q ss_pred             CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHH-----HHHHHhcCCccccccccccCCCCccEEEECC
Q 012866          298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAK-----SLASDVMGAARPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~-----~la~~~~~~~~~~~~l~~~~~~~~divInat  371 (454)
                      +.++++..|.|+|+ |-+|.+|+.-|+.+++.+.++-|+.++-.     .+.++++...+.-.+.+  .+...+++..|+
T Consensus       162 GidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~--~~~e~i~v~vAs  239 (351)
T COG5322         162 GIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYA--LPQEDILVWVAS  239 (351)
T ss_pred             CcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeecccc--ccccceEEEEee
Confidence            57888999999997 77899999999999887777777655432     23333333222111111  233344454444


Q ss_pred             CCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCC-Cceecc
Q 012866          372 PLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAG-AIIVSG  421 (454)
Q Consensus       372 ~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G-~~~~~G  421 (454)
                      +   .+.   ..|.++.++++.+++|--| |++-.  ...+..| ..+++|
T Consensus       240 ~---~~g---~~I~pq~lkpg~~ivD~g~-P~dvd--~~vk~~~~V~Ii~G  281 (351)
T COG5322         240 M---PKG---VEIFPQHLKPGCLIVDGGY-PKDVD--TSVKNVGGVRIIPG  281 (351)
T ss_pred             c---CCC---ceechhhccCCeEEEcCCc-Ccccc--cccccCCCeEEecC
Confidence            3   121   2477889999999999998 54321  1223333 555554

>PRK08589 short chain dehydrogenase; Validated

Probab=95.81  E-value=0.023  Score=55.26  Aligned_cols=45  Identities=31%  Similarity=0.479  Sum_probs=39.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+ ++++++++++
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~   49 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKI   49 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHH
Confidence            56899999997 699999999999999999999999 7777776655

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=95.80  E-value=0.022  Score=63.72  Aligned_cols=114  Identities=21%  Similarity=0.191  Sum_probs=72.9

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      +++.|||+|.+|.+++..|.+.|.  +|++++|+.++++.. .+++.......++.+ .+.++|+||.|+|......   
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a-~~~g~~~~~~~~~~~-~~~~aDvVilavp~~~~~~---   78 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELA-VSLGVIDRGEEDLAE-AVSGADVIVLAVPVLAMEK---   78 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHH-HHCCCCCcccCCHHH-HhcCCCEEEECCCHHHHHH---
Confidence            679999999999999999999983  899999998886654 344432111223333 3567899999998642211   


Q ss_pred             CCCC--hhcccCCcEEEEEecCCCCCHHHHHHHH----CCCceeccHHHH
Q 012866          382 VPVS--EETLRDYQLVFDAVYTPRKTRLLKDAEA----AGAIIVSGVEMF  425 (454)
Q Consensus       382 ~~i~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~----~G~~~~~Gl~ml  425 (454)
                       .+.  ...++++.++.|+.-.+.  ..++..++    .+.+++++..|.
T Consensus        79 -vl~~l~~~~~~~~ii~d~~svk~--~~~~~l~~~~~~~~~r~~~~hPm~  125 (735)
T PRK14806         79 -VLADLKPLLSEHAIVTDVGSTKG--NVVDAARAVFGELPAGFVPGHPIA  125 (735)
T ss_pred             -HHHHHHHhcCCCcEEEEcCCCch--HHHHHHHHhccccCCeEEecCCcC
Confidence             111  123456788999976532  22333333    245566666665

>PRK07453 protochlorophyllide oxidoreductase; Validated

Probab=95.79  E-value=0.023  Score=56.72  Aligned_cols=47  Identities=23%  Similarity=0.300  Sum_probs=41.8

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ..+|+++|.|+ ||+|++++..|.+.|++|++++|+.++++++.+++.
T Consensus         4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~   51 (322)
T PRK07453          4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELG   51 (322)
T ss_pred             CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence            35789999996 799999999999999999999999999988877763

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.79  E-value=0.048  Score=57.37  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=54.5

Q ss_pred             EEEEccchhHHH-HHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          306 FVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       306 vlViGaGG~ara-i~~~L~~~G~~v~i~nRt~~~-a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      +.++|.||+|.+ ++..|+++|++|+++++.... .+.|. ..+.....-.+. + .+.++|+||-+  .|.        
T Consensus         2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~-~~gi~~~~g~~~-~-~~~~~d~vV~s--pgi--------   68 (448)
T TIGR01082         2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLE-ALGIPIYIGHSA-E-NLDDADVVVVS--AAI--------   68 (448)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHH-HCcCEEeCCCCH-H-HCCCCCEEEEC--CCC--------
Confidence            789999999998 899999999999999976532 12221 111111000000 0 11234444321  111        


Q ss_pred             CChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHH
Q 012866          384 VSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       384 i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                                        |...|.+++|+++|++++.-.+++
T Consensus        69 ------------------~~~~p~~~~a~~~~i~v~~~~el~   92 (448)
T TIGR01082        69 ------------------KDDNPEIVEAKERGIPVIRRAEML   92 (448)
T ss_pred             ------------------CCCCHHHHHHHHcCCceEeHHHHH
Confidence                              335678899999999999988875

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK07831 short chain dehydrogenase; Provisional

Probab=95.79  E-value=0.023  Score=54.79  Aligned_cols=47  Identities=43%  Similarity=0.548  Sum_probs=39.8

Q ss_pred             CCCCceEEEEcc-c-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-G-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-G-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++++++|+|+ | |.|++++..|++.|++|++.+|+.++.++..+++
T Consensus        14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~   62 (262)
T PRK07831         14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADEL   62 (262)
T ss_pred             ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            356899999997 6 8999999999999999999999988776665443

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.79  E-value=0.023  Score=53.89  Aligned_cols=74  Identities=14%  Similarity=-0.023  Sum_probs=47.5

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      ...+++++|||+|+|.+|..=+..|.+.|++|+|++.+.. ..++++..-...+.. .+.....+.++++||.||.
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~-r~~~~~dl~g~~LViaATd   94 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIK-GNYDKEFIKDKHLIVIATD   94 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEe-CCCChHHhCCCcEEEECCC
Confidence            3556789999999999988878899999999999998763 334444321111100 0111102356778887775

>PRK14030 glutamate dehydrogenase; Provisional

Probab=95.77  E-value=0.096  Score=54.67  Aligned_cols=128  Identities=16%  Similarity=0.137  Sum_probs=78.5

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEE--------Ee---CCHHHHHH
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI--------FD---IDFERAKS  341 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i--------~n---Rt~~~a~~  341 (454)
                      -+.|...+++..+.+         .+.+++|++|+|-|.|.+|..++..|.+.|++|+.        +|   -+.++...
T Consensus       207 Tg~Gv~~~~~~~~~~---------~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~  277 (445)
T PRK14030        207 TGFGALYFVHQMLET---------KGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDY  277 (445)
T ss_pred             cHHHHHHHHHHHHHH---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHH
Confidence            567777777776652         23578999999999999999999999999998776        67   55555322


Q ss_pred             HHH--------------Hh-cCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---ccc--CCcEEEEEecC
Q 012866          342 LAS--------------DV-MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLR--DYQLVFDAVYT  401 (454)
Q Consensus       342 la~--------------~~-~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~--~~~~v~D~~y~  401 (454)
                      |.+              .+ +...++-+++   ....+||+|-|.--+        .|..+   .+.  ...+|+.-.-+
T Consensus       278 l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~---~~~~cDVliPcAl~n--------~I~~~na~~l~~~~ak~V~EgAN~  346 (445)
T PRK14030        278 MLELRASGNDIVAPYAEKFPGSTFFAGKKP---WEQKVDIALPCATQN--------ELNGEDADKLIKNGVLCVAEVSNM  346 (445)
T ss_pred             HHHHHHhcCccHHHHHhcCCCCEEcCCccc---eeccccEEeeccccc--------cCCHHHHHHHHHcCCeEEEeCCCC
Confidence            221              11 1111111222   123589988555322        23332   242  45788898888


Q ss_pred             CCCCHHHHHHHHCCCceec
Q 012866          402 PRKTRLLKDAEAAGAIIVS  420 (454)
Q Consensus       402 P~~T~ll~~A~~~G~~~~~  420 (454)
                      |....--+.-+++|+.+++
T Consensus       347 p~t~eA~~iL~~rGI~~vP  365 (445)
T PRK14030        347 GCTAEAIDKFIAAKQLFAP  365 (445)
T ss_pred             CCCHHHHHHHHHCCCEEeC
Confidence            7533333444457765544

>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.76  E-value=0.025  Score=54.15  Aligned_cols=46  Identities=33%  Similarity=0.592  Sum_probs=41.0

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++++|.|+ |++|++++..|.+.|++|.++.|+.++.+++.+++
T Consensus         5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   51 (262)
T PRK13394          5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEI   51 (262)
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHH
Confidence            56899999997 89999999999999999999999998877777665

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.76  E-value=0.026  Score=53.64  Aligned_cols=46  Identities=26%  Similarity=0.532  Sum_probs=40.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++++|+|+ ||+|++++..|.+.|++|+++.|+.++.+++.+++
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~   49 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAEC   49 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46789999997 89999999999999999999999998877766554

>PRK06194 hypothetical protein; Provisional

Probab=95.73  E-value=0.026  Score=55.12  Aligned_cols=46  Identities=26%  Similarity=0.451  Sum_probs=40.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++++||.|+ ||+|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (287)
T PRK06194          4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAEL   50 (287)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence            45789999996 79999999999999999999999988877776665

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=95.71  E-value=0.031  Score=56.61  Aligned_cols=110  Identities=16%  Similarity=0.139  Sum_probs=66.0

Q ss_pred             CceEEEEccchhHHHHHHHHHHCC--Ce-EEEEeCCHHHHHHHHHHhcCC-ccccccccccCCCCccEEEECCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRG--AR-VVIFDIDFERAKSLASDVMGA-ARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G--~~-v~i~nRt~~~a~~la~~~~~~-~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+|.|+|+ ++|+.-+.++.+..  ++ +-|++|+.++|++++++++.. +.+++++    +.+.|+++.++|....+.
T Consensus         3 ~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eel----l~d~Di~~V~ipt~~P~~   77 (343)
T TIGR01761         3 VQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEEL----PDDIDIACVVVRSAIVGG   77 (343)
T ss_pred             CcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHH----hcCCCEEEEEeCCCCCCc
Confidence            358999999 78988888888754  64 789999999999999999864 2344443    233444444443210011


Q ss_pred             CCCCCCChhcccCCc-EEEEEecCCC----CCHHHHHHHHCCCceecc
Q 012866          379 TDRVPVSEETLRDYQ-LVFDAVYTPR----KTRLLKDAEAAGAIIVSG  421 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~-~v~D~~y~P~----~T~ll~~A~~~G~~~~~G  421 (454)
                      .. ..+....+..+. ++++   +|.    -..+++.|+++|+...-+
T Consensus        78 ~H-~e~a~~aL~aGkHVL~E---KPla~~Ea~el~~~A~~~g~~l~v~  121 (343)
T TIGR01761        78 QG-SALARALLARGIHVLQE---HPLHPRDIQDLLRLAERQGRRYLVN  121 (343)
T ss_pred             cH-HHHHHHHHhCCCeEEEc---CCCCHHHHHHHHHHHHHcCCEEEEE
Confidence            01 123334454443 2222   333    255677788888876543

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.70  E-value=0.025  Score=55.87  Aligned_cols=73  Identities=22%  Similarity=0.278  Sum_probs=54.8

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccc-------cccccc-----cCCCCccEEE
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARP-------FEDILN-----FQPEKGAILA  368 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~-------~~~l~~-----~~~~~~divI  368 (454)
                      .|.+|||+|||.+|......++..|+ +|.+++-.+.|. ++|++||.....       .+++.+     ..-..+|..|
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl-e~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~~  247 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL-ELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVTF  247 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH-HHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeEE
Confidence            47899999999999999999999999 999999998875 577779875321       111111     0113489999


Q ss_pred             ECCCCCC
Q 012866          369 NATPLGM  375 (454)
Q Consensus       369 nat~~g~  375 (454)
                      +||.+.+
T Consensus       248 dCsG~~~  254 (354)
T KOG0024|consen  248 DCSGAEV  254 (354)
T ss_pred             EccCchH
Confidence            9998754

>PRK14031 glutamate dehydrogenase; Provisional

Probab=95.69  E-value=0.085  Score=55.08  Aligned_cols=53  Identities=21%  Similarity=0.335  Sum_probs=43.2

Q ss_pred             ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEe
Q 012866          272 TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD  333 (454)
Q Consensus       272 TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~n  333 (454)
                      --+.|...+++..+++         .+.+++|++|+|.|.|.+|..++..|.+.|++|+.++
T Consensus       206 aTg~Gv~~~~~~~~~~---------~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVS  258 (444)
T PRK14031        206 ATGYGNIYFLMEMLKT---------KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMS  258 (444)
T ss_pred             ccHHHHHHHHHHHHHh---------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4577788888776652         2357999999999999999999999999999877633

>PRK07326 short chain dehydrogenase; Provisional

Probab=95.69  E-value=0.028  Score=53.08  Aligned_cols=47  Identities=26%  Similarity=0.379  Sum_probs=41.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ..+++++|+|+ |+.|++++..|.+.|++|++++|++++.+++.+.+.
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~   51 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELN   51 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHh
Confidence            34789999996 789999999999999999999999998888877664

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=95.69  E-value=0.028  Score=55.97  Aligned_cols=68  Identities=26%  Similarity=0.384  Sum_probs=51.3

Q ss_pred             EEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCcc-----cc---ccccccCCCCccEEEECCCCCC
Q 012866          306 FVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAAR-----PF---EDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       306 vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~-----~~---~~l~~~~~~~~divInat~~g~  375 (454)
                      +.|||+|++|.++++.|+..|.  ++++++++.++++..+.++.....     .+   .+.+  .+.++|+||.|....-
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~--~l~~aDiVIitag~p~   78 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYA--DAADADIVVITAGAPR   78 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHH--HhCCCCEEEEcCCCCC
Confidence            4689999999999999999985  799999999999988877653211     11   1222  3578999999886543

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PRK07814 short chain dehydrogenase; Provisional

Probab=95.68  E-value=0.031  Score=53.97  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=41.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++++++|+|+ ||+|++++..|.+.|++|.++.|+.++.+++.+.+
T Consensus         7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l   54 (263)
T PRK07814          7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQI   54 (263)
T ss_pred             cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999996 58999999999999999999999998888877665

>PRK06483 dihydromonapterin reductase; Provisional

Probab=95.67  E-value=0.028  Score=53.25  Aligned_cols=71  Identities=17%  Similarity=0.169  Sum_probs=46.9

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEEEEC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAILANA  370 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~divIna  370 (454)
                      +|+++|.|+ ||+|++++..|++.|++|++.+|+.++..+..+..+...  .++.+   +..+      .....|++||+
T Consensus         2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~lv~~   81 (236)
T PRK06483          2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPAIDGLRQAGAQCIQADFSTNAGIMAFIDELKQHTDGLRAIIHN   81 (236)
T ss_pred             CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhHHHHHHHcCCEEEEcCCCCHHHHHHHHHHHHhhCCCccEEEEC
Confidence            478999996 699999999999999999999998765433333333221  12211   1110      12457999998


Q ss_pred             CCC
Q 012866          371 TPL  373 (454)
Q Consensus       371 t~~  373 (454)
                      ...
T Consensus        82 ag~   84 (236)
T PRK06483         82 ASD   84 (236)
T ss_pred             Ccc
Confidence            754

>PRK05876 short chain dehydrogenase; Provisional

Probab=95.67  E-value=0.028  Score=54.98  Aligned_cols=46  Identities=33%  Similarity=0.452  Sum_probs=41.0

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||.|++++..|++.|++|.++.|+.++++++.+++
T Consensus         4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l   50 (275)
T PRK05876          4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHL   50 (275)
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56899999995 69999999999999999999999998888877665

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.67  E-value=0.037  Score=57.99  Aligned_cols=73  Identities=21%  Similarity=0.163  Sum_probs=56.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCc-----cccccccccCCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAA-----RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~~~-----~~~~~l~~~~~~~~divInat~~  373 (454)
                      ...++++|+|+|..|+.++..|.+.|.+|+++++++++.+++.+++. ...     .+.+.+.+..+.++|.+|.+++-
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~  307 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND  307 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence            45789999999999999999999999999999999999888877642 211     12223433346789999988763

>PRK07576 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.03  Score=54.23  Aligned_cols=47  Identities=21%  Similarity=0.343  Sum_probs=40.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|+|+ ||.|++++..|++.|++|++++|+.++.+++.+++
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   53 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQL   53 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            367899999997 79999999999999999999999988877765554

>PRK06138 short chain dehydrogenase; Provisional

Probab=95.66  E-value=0.028  Score=53.50  Aligned_cols=46  Identities=46%  Similarity=0.600  Sum_probs=40.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|+|+ |+.|++++..|.+.|++|+++.|+.++.++..+.+
T Consensus         3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   49 (252)
T PRK06138          3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAI   49 (252)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH
Confidence            56889999996 79999999999999999999999998887776655

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.64  E-value=0.051  Score=57.02  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=30.6

Q ss_pred             CCC-ceEEEEccchhHHHHHHHHHHC--CCeEEEEeCCH
Q 012866          301 LAG-RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  336 (454)
Q Consensus       301 ~~~-k~vlViGaGG~arai~~~L~~~--G~~v~i~nRt~  336 (454)
                      +.+ ++++|+|.|++|++++..|...  |++|++++...
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~   42 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRE   42 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            345 7899999999999999999987  47899999754

>PRK12939 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.032  Score=52.97  Aligned_cols=46  Identities=35%  Similarity=0.403  Sum_probs=40.8

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++++|+|+ |++|++++..|.+.|++|++++|+.++++.+.+++
T Consensus         5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   51 (250)
T PRK12939          5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAAL   51 (250)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            56899999996 79999999999999999999999999888776655

>PRK09072 short chain dehydrogenase; Provisional

Probab=95.63  E-value=0.032  Score=53.80  Aligned_cols=46  Identities=35%  Similarity=0.575  Sum_probs=40.7

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++..++
T Consensus         3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (263)
T PRK09072          3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL   49 (263)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            45789999995 79999999999999999999999999888877664

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=95.63  E-value=0.033  Score=55.77  Aligned_cols=72  Identities=17%  Similarity=0.218  Sum_probs=52.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------ccc-ccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPF-EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~-~~l~~~~~~~~divInat~~  373 (454)
                      .+|.|||+|.+|.++++.|...|.  ++.+++++.++++..+.++....       +.. .+.+  ..+++|+||.|...
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~--~~~~adivvitaG~   81 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS--VTANSKVVIVTAGA   81 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH--HhCCCCEEEECCCC
Confidence            489999999999999999998886  79999999888877776664321       111 1222  25789999987655


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      .-.|
T Consensus        82 ~~k~   85 (312)
T cd05293          82 RQNE   85 (312)
T ss_pred             CCCC
Confidence            3333

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=95.62  E-value=0.029  Score=53.45  Aligned_cols=47  Identities=26%  Similarity=0.477  Sum_probs=41.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++++++|.|+ |++|.+++..|++.|++|++++|+.++++++.+++
T Consensus         9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l   56 (247)
T PRK08945          9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEI   56 (247)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHH
Confidence            467899999996 68999999999999999999999998888876665

>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]

Probab=95.62  E-value=0.021  Score=54.26  Aligned_cols=34  Identities=24%  Similarity=0.420  Sum_probs=30.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI  334 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nR  334 (454)
                      +++.+|+|+|.||.|..++-+|++-|+ +|++++-
T Consensus        28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~   62 (263)
T COG1179          28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM   62 (263)
T ss_pred             HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence            567899999999999999999999998 8887764

>PLN02253 xanthoxin dehydrogenase

Probab=95.61  E-value=0.031  Score=54.44  Aligned_cols=48  Identities=21%  Similarity=0.397  Sum_probs=42.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+++|+++|.|+ ||.|++++..|++.|++|.+++|+.+..++++++++
T Consensus        15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~   63 (280)
T PLN02253         15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG   63 (280)
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc
Confidence            467899999996 699999999999999999999999888888877663

>PRK05875 short chain dehydrogenase; Provisional

Probab=95.61  E-value=0.032  Score=54.16  Aligned_cols=47  Identities=23%  Similarity=0.502  Sum_probs=40.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ |+.|++++..|.+.|++|++++|+.++.+.+.+++
T Consensus         4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (276)
T PRK05875          4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEI   51 (276)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            366899999996 79999999999999999999999988877766554

>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase

Probab=95.59  E-value=0.036  Score=61.42  Aligned_cols=48  Identities=35%  Similarity=0.605  Sum_probs=42.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+.+|+++|.|+ ||+|++++..|.+.|++|.+++|+.++++.+.+++
T Consensus       410 ~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l  458 (676)
T TIGR02632       410 KTLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEI  458 (676)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHH
Confidence            4567899999996 79999999999999999999999998888776654

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=95.59  E-value=0.0029  Score=54.11  Aligned_cols=92  Identities=17%  Similarity=0.104  Sum_probs=60.5

Q ss_pred             eEEEEc-cchhHHHHHHHHHHCCC-e-EEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCC
Q 012866          305 MFVLAG-AGGAGRALAFGAKSRGA-R-VVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       305 ~vlViG-aGG~arai~~~L~~~G~-~-v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ||.|+| +|-+|+.++..|.+.-. + +.++.|+.+..+.+...++.    ....+++.......++|+|+.|+|.+...
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~~~   80 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGASK   80 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHHHH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhHHH
Confidence            589999 78889999999998544 4 77788887566667666541    11222221111246789999999865322


Q ss_pred             CCCCCCCChhcccCCcEEEEEecC
Q 012866          378 NTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                           .+.+..+..+..|+|+...
T Consensus        81 -----~~~~~~~~~g~~ViD~s~~   99 (121)
T PF01118_consen   81 -----ELAPKLLKAGIKVIDLSGD   99 (121)
T ss_dssp             -----HHHHHHHHTTSEEEESSST
T ss_pred             -----HHHHHHhhCCcEEEeCCHH
Confidence                 1334456788899999764

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK05693 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.025  Score=54.91  Aligned_cols=70  Identities=26%  Similarity=0.279  Sum_probs=48.6

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEEEECC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAILANAT  371 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~divInat  371 (454)
                      |+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+.+... +...  .++.+   +.+.      .....|+|||+.
T Consensus         2 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~vi~~a   80 (274)
T PRK05693          2 PVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDVEALAAA-GFTAVQLDVNDGAALARLAEELEAEHGGLDVLINNA   80 (274)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC-CCeEEEeeCCCHHHHHHHHHHHHHhcCCCCEEEECC
Confidence            57999996 7999999999999999999999998887766432 2211  12211   1110      124579999988


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      ..+
T Consensus        81 g~~   83 (274)
T PRK05693         81 GYG   83 (274)
T ss_pred             CCC
Confidence            643

>PRK12829 short chain dehydrogenase; Provisional

Probab=95.56  E-value=0.032  Score=53.55  Aligned_cols=48  Identities=31%  Similarity=0.459  Sum_probs=42.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+++++++|+|+ |+.|++++..|.+.|++|+++.|+.+..+++.+.+.
T Consensus         8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~   56 (264)
T PRK12829          8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP   56 (264)
T ss_pred             ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh
Confidence            367899999996 699999999999999999999999988888776654

>PRK08643 acetoin reductase; Validated

Probab=95.55  E-value=0.031  Score=53.49  Aligned_cols=45  Identities=29%  Similarity=0.386  Sum_probs=39.4

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      +|+++|+|+ ||.|++++..|.+.|++|++++|+.++.+++..++.
T Consensus         2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~   47 (256)
T PRK08643          2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLS   47 (256)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            578999996 699999999999999999999999988888776653

>PRK07109 short chain dehydrogenase; Provisional

Probab=95.55  E-value=0.034  Score=56.12  Aligned_cols=75  Identities=28%  Similarity=0.392  Sum_probs=54.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CCC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QPE  362 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~  362 (454)
                      .+++++++|.|+ ||+|++++..|++.|++|++++|+.++.+++.+++.   ...    .++.+   +...      ...
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~~~~~~~g   84 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAADRAEEELG   84 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence            356889999996 799999999999999999999999998888776552   221    12221   1110      124


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|++||+....
T Consensus        85 ~iD~lInnAg~~   96 (334)
T PRK07109         85 PIDTWVNNAMVT   96 (334)
T ss_pred             CCCEEEECCCcC
Confidence            679999988654

>PRK07454 short chain dehydrogenase; Provisional

Probab=95.52  E-value=0.035  Score=52.67  Aligned_cols=45  Identities=20%  Similarity=0.321  Sum_probs=39.5

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++|+++|+|+ |+.|++++..|.+.|.+|++++|+.++.+++.+.+
T Consensus         5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (241)
T PRK07454          5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAEL   50 (241)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578999996 89999999999999999999999998887776654

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=95.50  E-value=0.069  Score=55.13  Aligned_cols=99  Identities=19%  Similarity=0.200  Sum_probs=61.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC------------Ccccc---ccccccCCCCccEEEE
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG------------AARPF---EDILNFQPEKGAILAN  369 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~------------~~~~~---~~l~~~~~~~~divIn  369 (454)
                      +|.|+|+|-+|..++..++ .|++|+.++++.++.+++.+....            ....+   .+..+ ...++|++|-
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~-~~~~ad~vii   79 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNE-AYRDADYVII   79 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhh-hhcCCCEEEE
Confidence            5889999999999997776 489999999999999888652211            00011   01111 2467899999


Q ss_pred             CCCCCCCCCCCC---CCCCh-----hcccCCcEEEEEecCCCCC
Q 012866          370 ATPLGMHPNTDR---VPVSE-----ETLRDYQLVFDAVYTPRKT  405 (454)
Q Consensus       370 at~~g~~p~~~~---~~i~~-----~~l~~~~~v~D~~y~P~~T  405 (454)
                      |+|-........   ..+..     ..++++.+|++.+--|..|
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgt  123 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGF  123 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCch
Confidence            987542111000   00100     0145678888888776643

>PRK06482 short chain dehydrogenase; Provisional

Probab=95.50  E-value=0.051  Score=52.75  Aligned_cols=71  Identities=17%  Similarity=0.218  Sum_probs=50.8

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEEE
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILAN  369 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divIn  369 (454)
                      |++||+|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+..+...    .++.+   +.+.      .....|+||+
T Consensus         3 k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~vi~   82 (276)
T PRK06482          3 KTWFITGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTDSAAVRAVVDRAFAALGRIDVVVS   82 (276)
T ss_pred             CEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            67999995 799999999999999999999999988887766543221    22221   1110      1245799999


Q ss_pred             CCCCC
Q 012866          370 ATPLG  374 (454)
Q Consensus       370 at~~g  374 (454)
                      +....
T Consensus        83 ~ag~~   87 (276)
T PRK06482         83 NAGYG   87 (276)
T ss_pred             CCCCC
Confidence            87654

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.50  E-value=0.049  Score=56.91  Aligned_cols=32  Identities=31%  Similarity=0.460  Sum_probs=29.2

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +++|+|.||+|++++..|.+.|++|+++++..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~   32 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKP   32 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCC
Confidence            47899999999999999999999999999754

>PRK07677 short chain dehydrogenase; Provisional

Probab=95.50  E-value=0.033  Score=53.30  Aligned_cols=44  Identities=25%  Similarity=0.417  Sum_probs=38.8

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +|+++|.|+ ||.|++++..|.+.|++|++++|+.++++++++++
T Consensus         1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~   45 (252)
T PRK07677          1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEI   45 (252)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            478999996 58999999999999999999999998888877655

>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional

Probab=95.50  E-value=0.033  Score=53.56  Aligned_cols=47  Identities=19%  Similarity=0.322  Sum_probs=38.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|++||+|+ ||.|++++..|.+.|++|.++.|+ ++.+++.+.+
T Consensus        11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~   58 (258)
T PRK06935         11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHG-TNWDETRRLI   58 (258)
T ss_pred             ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHH
Confidence            3477899999997 599999999999999999999998 5555554433

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.49  E-value=0.08  Score=55.44  Aligned_cols=36  Identities=22%  Similarity=0.268  Sum_probs=32.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +.+++++|+|.|+.|++++..|.+.|++|++++...
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            357899999999999999999999999999999653

>PRK14851 hypothetical protein; Provisional

Probab=95.48  E-value=0.023  Score=62.65  Aligned_cols=35  Identities=31%  Similarity=0.444  Sum_probs=31.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||.|..++..|+..|+ +++|++.+
T Consensus        41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D   76 (679)
T PRK14851         41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD   76 (679)
T ss_pred             HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            457899999999999999999999999 99998854

>PLN02989 cinnamyl-alcohol dehydrogenase family protein

Probab=95.48  E-value=0.029  Score=55.93  Aligned_cols=70  Identities=13%  Similarity=0.022  Sum_probs=47.2

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---C--C--c--ccccc---ccccCCCCccEEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---G--A--A--RPFED---ILNFQPEKGAILAN  369 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~--~--~--~~~~~---l~~~~~~~~divIn  369 (454)
                      +|++||.|+ |++|++++..|.+.|++|+++.|+.++.+.......   .  .  .  .++.+   +.+ ...+.|+||+
T Consensus         5 ~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~vih   83 (325)
T PLN02989          5 GKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFEL-AIDGCETVFH   83 (325)
T ss_pred             CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHH-HHcCCCEEEE
Confidence            689999995 899999999999999999988888765544322211   0  1  1  12221   222 2346799999


Q ss_pred             CCCC
Q 012866          370 ATPL  373 (454)
Q Consensus       370 at~~  373 (454)
                      +...
T Consensus        84 ~A~~   87 (325)
T PLN02989         84 TASP   87 (325)
T ss_pred             eCCC
Confidence            8754

>PRK06940 short chain dehydrogenase; Provisional

Probab=95.48  E-value=0.032  Score=54.49  Aligned_cols=43  Identities=30%  Similarity=0.479  Sum_probs=37.5

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +|.++|.|+||.|++++..|. .|++|++++|+.++++++.+++
T Consensus         2 ~k~~lItGa~gIG~~la~~l~-~G~~Vv~~~r~~~~~~~~~~~l   44 (275)
T PRK06940          2 KEVVVVIGAGGIGQAIARRVG-AGKKVLLADYNEENLEAAAKTL   44 (275)
T ss_pred             CCEEEEECCChHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999999999999996 7999999999988887776655

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=95.46  E-value=0.019  Score=60.44  Aligned_cols=101  Identities=17%  Similarity=0.201  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc---cccccccccCCCCccEEEECCCCCCCCCCCCCCCC--h
Q 012866          314 AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA---RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS--E  386 (454)
Q Consensus       314 ~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~---~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~--~  386 (454)
                      ||+.++..|.+.|++|+++|||+++.+++++..+.  ..   .+.+++.+ .++.+|+|+-+.|.|-.  ++. .+.  .
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~-~l~~~~~Ii~mv~~g~~--v~~-Vi~~l~   76 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVA-SLEKPRKILLMVKAGAP--VDA-VIEQLL   76 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHh-hCCCCCEEEEECCCchH--HHH-HHHHHH
Confidence            68899999999999999999999999999875331  11   13333322 23457999988876521  111 111  1


Q ss_pred             hcccCCcEEEEEec-CCCCCH-HHHHHHHCCCce
Q 012866          387 ETLRDYQLVFDAVY-TPRKTR-LLKDAEAAGAII  418 (454)
Q Consensus       387 ~~l~~~~~v~D~~y-~P~~T~-ll~~A~~~G~~~  418 (454)
                      ..+.++.+++|..- .|.+|. ..++++++|+.+
T Consensus        77 ~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~f  110 (459)
T PRK09287         77 PLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHF  110 (459)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeE
Confidence            23577899999974 455553 335555667643

>PRK08263 short chain dehydrogenase; Provisional

Probab=95.45  E-value=0.056  Score=52.55  Aligned_cols=72  Identities=26%  Similarity=0.308  Sum_probs=51.4

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divI  368 (454)
                      +|+++|.|+ |++|++++..|.+.|++|++..|+.++.+++.+.++...    .++.+   +...      .....|.||
T Consensus         3 ~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~d~vi   82 (275)
T PRK08263          3 EKVWFITGASRGFGRAWTEAALERGDRVVATARDTATLADLAEKYGDRLLPLALDVTDRAAVFAAVETAVEHFGRLDIVV   82 (275)
T ss_pred             CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhccCCeeEEEccCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            578999995 799999999999999999999999988887776554321    12211   1110      124579999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      ++....
T Consensus        83 ~~ag~~   88 (275)
T PRK08263         83 NNAGYG   88 (275)
T ss_pred             ECCCCc
Confidence            987653

>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.44  E-value=0.042  Score=52.04  Aligned_cols=46  Identities=33%  Similarity=0.499  Sum_probs=40.0

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++++|+|+ |+.|++++..|.+.|++|.+++|+.++.+++++++
T Consensus         5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~   51 (239)
T PRK07666          5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEV   51 (239)
T ss_pred             CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45788999995 69999999999999999999999998877776655

>PRK08303 short chain dehydrogenase; Provisional

Probab=95.44  E-value=0.032  Score=55.55  Aligned_cols=37  Identities=38%  Similarity=0.587  Sum_probs=33.3

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .+++|.++|.|+ +|+|++++.+|++.|++|++++|+.
T Consensus         5 ~l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~   42 (305)
T PRK08303          5 PLRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRST   42 (305)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccc
Confidence            367899999997 5999999999999999999999973

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.42  E-value=0.032  Score=54.87  Aligned_cols=37  Identities=27%  Similarity=0.326  Sum_probs=34.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK  340 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~  340 (454)
                      +++.|||+|-+|.+++..|+..|.+|+++++++++.+
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~   40 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVD   40 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHH
Confidence            4799999999999999999999999999999998875

>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase

Probab=95.42  E-value=0.039  Score=52.45  Aligned_cols=45  Identities=31%  Similarity=0.571  Sum_probs=39.5

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++++|.|+ |+.|++++..|.+.|++|++++|+.++.+++...+
T Consensus         2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   47 (250)
T TIGR03206         2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADI   47 (250)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence            5789999996 79999999999999999999999998888776554

Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.41  E-value=0.039  Score=55.45  Aligned_cols=74  Identities=14%  Similarity=0.143  Sum_probs=51.7

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC--------ccc-cccccccCCCCccEEEECC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA--------ARP-FEDILNFQPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~--------~~~-~~~l~~~~~~~~divInat  371 (454)
                      +.+++.|||+|.+|..+++.++..|. +|.+++++.++++..+-++...        .+. ..+.+  .+.++|+||.+.
T Consensus         4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~--~l~~ADiVVita   81 (319)
T PTZ00117          4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE--DIKDSDVVVITA   81 (319)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH--HhCCCCEEEECC
Confidence            45789999999999999999999895 9999999987765443322210        011 12333  357899999988


Q ss_pred             CCCCCC
Q 012866          372 PLGMHP  377 (454)
Q Consensus       372 ~~g~~p  377 (454)
                      ..+-.|
T Consensus        82 g~~~~~   87 (319)
T PTZ00117         82 GVQRKE   87 (319)
T ss_pred             CCCCCC
Confidence            554333

>PRK12828 short chain dehydrogenase; Provisional

Probab=95.41  E-value=0.038  Score=51.91  Aligned_cols=46  Identities=33%  Similarity=0.481  Sum_probs=38.9

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|+|+ |+.|++++..|.+.|++|.+++|+.++..+...++
T Consensus         5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   51 (239)
T PRK12828          5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGV   51 (239)
T ss_pred             CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHH
Confidence            56899999996 79999999999999999999999887766554443

>PRK05884 short chain dehydrogenase; Provisional

Probab=95.40  E-value=0.037  Score=52.27  Aligned_cols=69  Identities=17%  Similarity=0.215  Sum_probs=50.1

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc---cccc---CCCCccEEEECCCC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED---ILNF---QPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~~---l~~~---~~~~~divInat~~  373 (454)
                      +++|.|+ ||+|++++..|.+.|++|++++|+.+++++++++++....  ++.+   +.+.   .....|++||+...
T Consensus         2 ~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~id~lv~~ag~   79 (223)
T PRK05884          2 EVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTDPASLEEARGLFPHHLDTIVNVPAP   79 (223)
T ss_pred             eEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCCHHHHHHHHHHHhhcCcEEEECCCc
Confidence            5899986 7999999999999999999999999998888776643321  2221   2110   11257999998653

>PRK07201 short chain dehydrogenase; Provisional

Probab=95.39  E-value=0.036  Score=61.01  Aligned_cols=47  Identities=32%  Similarity=0.569  Sum_probs=42.3

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|.+.|++|+++.|+.++++++++++
T Consensus       368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~  415 (657)
T PRK07201        368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEI  415 (657)
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            567899999996 69999999999999999999999999988887665

>PRK08177 short chain dehydrogenase; Provisional

Probab=95.38  E-value=0.059  Score=50.67  Aligned_cols=71  Identities=17%  Similarity=0.087  Sum_probs=47.7

Q ss_pred             ceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccccc---cc----cCCCCccEEEECCCC
Q 012866          304 RMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFEDI---LN----FQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~l---~~----~~~~~~divInat~~  373 (454)
                      ++++|+| +||.|++++..|++.|++|++++|+.++.+++.+.-+...  +++.+.   .+    ..-.+.|+||++...
T Consensus         2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~id~vi~~ag~   81 (225)
T PRK08177          2 RTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMNDPASLDQLLQRLQGQRFDLLFVNAGI   81 (225)
T ss_pred             CEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCCHHHHHHHHHHhhcCCCCEEEEcCcc
Confidence            5799999 4799999999999999999999999887665533211111  222221   11    011357999998755


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      .
T Consensus        82 ~   82 (225)
T PRK08177         82 S   82 (225)
T ss_pred             c
Confidence            3

>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated

Probab=95.38  E-value=0.05  Score=52.17  Aligned_cols=48  Identities=29%  Similarity=0.549  Sum_probs=41.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+.+|+++|+|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus         7 ~~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l   55 (255)
T PRK06113          7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_pred             cCcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            3567899999996 69999999999999999999999998888776654

>PRK08251 short chain dehydrogenase; Provisional

Probab=95.38  E-value=0.042  Score=52.29  Aligned_cols=44  Identities=18%  Similarity=0.381  Sum_probs=38.6

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++|.|+ ||.|++++..|.+.|++|.+..|+.++.+++...+
T Consensus         2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   46 (248)
T PRK08251          2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAEL   46 (248)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            578999995 79999999999999999999999999888776554

>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional

Probab=95.37  E-value=0.039  Score=53.16  Aligned_cols=47  Identities=23%  Similarity=0.525  Sum_probs=38.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~n-Rt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ +|.|++++..|.+.|++|+++. |+.++++++++++
T Consensus         5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~   53 (260)
T PRK08416          5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDL   53 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            467899999997 6999999999999999988775 5667776665544

>PLN02730 enoyl-[acyl-carrier-protein] reductase

Probab=95.35  E-value=0.03  Score=55.83  Aligned_cols=45  Identities=22%  Similarity=0.325  Sum_probs=38.3

Q ss_pred             CCCCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866          299 SPLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       299 ~~~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~  344 (454)
                      .+++||.+||.|+   .|+|++++..|++.|++|.+ .|+.++.++++.
T Consensus         5 ~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~   52 (303)
T PLN02730          5 IDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFET   52 (303)
T ss_pred             cCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHH
Confidence            4588999999999   79999999999999999988 677666666553

>PRK06101 short chain dehydrogenase; Provisional

Probab=95.34  E-value=0.039  Score=52.51  Aligned_cols=42  Identities=21%  Similarity=0.368  Sum_probs=37.6

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      ++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++.+.
T Consensus         2 ~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   44 (240)
T PRK06101          2 TAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ   44 (240)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh
Confidence            57899995 7999999999999999999999999988887654

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=95.33  E-value=0.038  Score=55.18  Aligned_cols=70  Identities=23%  Similarity=0.226  Sum_probs=52.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCCccc----------cccccccCCCCccEEEECCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAARP----------FEDILNFQPEKGAILANATP  372 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-~~~~~~----------~~~l~~~~~~~~divInat~  372 (454)
                      .++.|||+|.-|.|++..|++.|.+|.+|.|+++-.+++-..- +..+.+          ..|+.+ .+.++|+|+-++|
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~-a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAE-ALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHH-HHhcCCEEEEECC
Confidence            4789999999999999999999999999999999988876541 222211          123433 4566899888887


Q ss_pred             CC
Q 012866          373 LG  374 (454)
Q Consensus       373 ~g  374 (454)
                      ..
T Consensus        81 s~   82 (329)
T COG0240          81 SQ   82 (329)
T ss_pred             hH
Confidence            64

>PRK12862 malic enzyme; Reviewed

Probab=95.32  E-value=0.15  Score=56.96  Aligned_cols=184  Identities=18%  Similarity=0.194  Sum_probs=104.1

Q ss_pred             CCCceEEecccCCHHHHHHhc--CCCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccH-HH
Q 012866          200 NYNGIYVPMFVDDLKKFFSTY--SSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDC-EA  276 (454)
Q Consensus       200 gl~~~y~~~~~~~~~~~~~~l--~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~-~G  276 (454)
                      |+|..=+.++.+|.++|++..  ..++|.|+|.-==-...++..++++-+      ..|.-++.+ |  .+|+-.-. .|
T Consensus       109 gi~~~~i~~~~~d~d~~v~~v~~~~p~f~~i~~ED~~~~~~f~i~~~~~~------~~~ip~f~D-D--~~GTa~v~la~  179 (763)
T PRK12862        109 GIDVFDIELDESDPDKLVEIVAALEPTFGGINLEDIKAPECFYIERELRE------RMKIPVFHD-D--QHGTAIIVAAA  179 (763)
T ss_pred             CCCccccccCCCCHHHHHHHHHHhCCCcceeeeecccCchHHHHHHHHHh------cCCCceEec-C--cccHHHHHHHH
Confidence            466322233334666666655  358899987532122223333433221      123334441 2  34433222 23


Q ss_pred             HHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC---eEEEEeCC--------H--H-HHHHH
Q 012866          277 SITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID--------F--E-RAKSL  342 (454)
Q Consensus       277 ~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~---~v~i~nRt--------~--~-~a~~l  342 (454)
                      ++++++-             .+.++++.++++.|||.+|-+++..|...|.   +|++++|.        .  . .-+.+
T Consensus       180 l~~a~~~-------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~  246 (763)
T PRK12862        180 LLNGLKL-------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARY  246 (763)
T ss_pred             HHHHHHH-------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHH
Confidence            4444431             1356888999999999999999999999998   69999842        1  1 12234


Q ss_pred             HHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcc---cCCcEEEEEecCCC--CCHHHHHHHHC--C
Q 012866          343 ASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL---RDYQLVFDAVYTPR--KTRLLKDAEAA--G  415 (454)
Q Consensus       343 a~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l---~~~~~v~D~~y~P~--~T~ll~~A~~~--G  415 (454)
                      |+..     ...+|.+ .++.+|++|-++..|        .+.++++   .+..++|=+. ||.  -||  ++|.+.  |
T Consensus       247 a~~~-----~~~~l~e-~~~~~~v~iG~s~~g--------~~~~~~v~~M~~~piifals-NP~~E~~p--~~a~~~~~~  309 (763)
T PRK12862        247 AQKT-----DARTLAE-VIEGADVFLGLSAAG--------VLKPEMVKKMAPRPLIFALA-NPTPEILP--EEARAVRPD  309 (763)
T ss_pred             hhhc-----ccCCHHH-HHcCCCEEEEcCCCC--------CCCHHHHHHhccCCEEEeCC-CCcccCCH--HHHHHhcCC
Confidence            4432     2234544 456689999777533        3566654   3578898887 444  365  555554  4


Q ss_pred             CceeccH
Q 012866          416 AIIVSGV  422 (454)
Q Consensus       416 ~~~~~Gl  422 (454)
                      +.+..|.
T Consensus       310 ~i~atGr  316 (763)
T PRK12862        310 AIIATGR  316 (763)
T ss_pred             EEEEECC
Confidence            5555554

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.31  E-value=0.034  Score=54.63  Aligned_cols=119  Identities=8%  Similarity=-0.016  Sum_probs=70.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCC----CeEEEEeCCH-HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDF-ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G----~~v~i~nRt~-~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      ++.|||+|.+|.+++..|.+.|    .+|++++|+. ++++.+...++.... ..+..+ ...++|+||-|+|...... 
T Consensus         3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~-~~~~~e-~~~~aDvVilavpp~~~~~-   79 (277)
T PRK06928          3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVEL-ADNEAE-IFTKCDHSFICVPPLAVLP-   79 (277)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEE-eCCHHH-HHhhCCEEEEecCHHHHHH-
Confidence            5899999999999999999988    4799999864 556666555432111 122222 2456899999998543211 


Q ss_pred             CCCCCCh---hcccCCcEEEEEecCCCCCHHHHHHHHC-CC-ceeccHHHHHHHHHH
Q 012866          380 DRVPVSE---ETLRDYQLVFDAVYTPRKTRLLKDAEAA-GA-IIVSGVEMFLRQAIG  431 (454)
Q Consensus       380 ~~~~i~~---~~l~~~~~v~D~~y~P~~T~ll~~A~~~-G~-~~~~Gl~mlv~Qa~~  431 (454)
                          +-.   ..+.++..++.+.- -....-+++.... .+ ++++-....+.++.-
T Consensus        80 ----vl~~l~~~l~~~~~ivS~~a-Gi~~~~l~~~~~~~~vvR~MPN~~~~~g~g~t  131 (277)
T PRK06928         80 ----LLKDCAPVLTPDRHVVSIAA-GVSLDDLLEITPGLQVSRLIPSLTSAVGVGTS  131 (277)
T ss_pred             ----HHHHHHhhcCCCCEEEEECC-CCCHHHHHHHcCCCCEEEEeCccHHHHhhhcE
Confidence                111   12445556666542 2233334443221 12 467777777776654

>PRK08267 short chain dehydrogenase; Provisional

Probab=95.31  E-value=0.04  Score=52.96  Aligned_cols=44  Identities=32%  Similarity=0.443  Sum_probs=39.5

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      |+++|+|+ ||.|++++..|.+.|++|.+++|+.++.+++...++
T Consensus         2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   46 (260)
T PRK08267          2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG   46 (260)
T ss_pred             cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Confidence            57999996 799999999999999999999999999888877654

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=95.31  E-value=0.047  Score=52.41  Aligned_cols=47  Identities=28%  Similarity=0.388  Sum_probs=41.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+++
T Consensus         9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i   56 (259)
T PRK08213          9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHL   56 (259)
T ss_pred             CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999995 79999999999999999999999998877776554

>PRK07074 short chain dehydrogenase; Provisional

Probab=95.27  E-value=0.046  Score=52.39  Aligned_cols=44  Identities=36%  Similarity=0.523  Sum_probs=39.6

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +|+++|+|+ |+.|++++..|.+.|++|++++|+.++++.+.+.+
T Consensus         2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~   46 (257)
T PRK07074          2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALAAFADAL   46 (257)
T ss_pred             CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh
Confidence            468999997 79999999999999999999999999988887765

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.26  E-value=0.05  Score=51.36  Aligned_cols=46  Identities=28%  Similarity=0.421  Sum_probs=40.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++++|.|+ |+.|.+++..|.+.|++|++++|+.++++.+.+.+
T Consensus         3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (238)
T PRK05786          3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTL   49 (238)
T ss_pred             cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46789999997 68999999999999999999999999888775554

>PRK07024 short chain dehydrogenase; Provisional

Probab=95.25  E-value=0.044  Score=52.69  Aligned_cols=44  Identities=23%  Similarity=0.310  Sum_probs=39.0

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++++|.|+ ||.|++++..|++.|++|++++|+.++++++.+++
T Consensus         2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~   46 (257)
T PRK07024          2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARL   46 (257)
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc
Confidence            368999995 79999999999999999999999999888877765

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.24  E-value=0.055  Score=53.96  Aligned_cols=42  Identities=21%  Similarity=0.230  Sum_probs=37.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      .+++|+|+|++|.-+++.|.+.|.+|+++.|..++.+++.++
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~   44 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQA   44 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhc
Confidence            369999999999999999999999999999988888777653

>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional

Probab=95.24  E-value=0.051  Score=51.85  Aligned_cols=45  Identities=33%  Similarity=0.541  Sum_probs=39.9

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++++|.|+ |++|++++..|.+.|.+|.++.|+.++.+++..++
T Consensus         3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~   48 (258)
T PRK12429          3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEAL   48 (258)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH
Confidence            5689999995 89999999999999999999999999888776655

>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated

Probab=95.23  E-value=0.091  Score=54.39  Aligned_cols=90  Identities=24%  Similarity=0.283  Sum_probs=58.7

Q ss_pred             EeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-----------------chhHHHHHHHHHHCCCeEEE
Q 012866          269 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-----------------GGAGRALAFGAKSRGARVVI  331 (454)
Q Consensus       269 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGa-----------------GG~arai~~~L~~~G~~v~i  331 (454)
                      |---|..-++..+++.+.           ..+++||+++|.|+                 |.+|++++.+|..+|++|++
T Consensus       165 gr~~~~~~I~~~~~~~~~-----------~~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~  233 (399)
T PRK05579        165 GRMAEPEEIVAAAERALS-----------PKDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTL  233 (399)
T ss_pred             CCCCCHHHHHHHHHHHhh-----------hcccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEE
Confidence            445666667676665553           13478999999997                 56999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCCcccccc---c----cccCCCCccEEEECCCCC
Q 012866          332 FDIDFERAKSLASDVMGAARPFED---I----LNFQPEKGAILANATPLG  374 (454)
Q Consensus       332 ~nRt~~~a~~la~~~~~~~~~~~~---l----~~~~~~~~divInat~~g  374 (454)
                      +.++.+ .+   ...+...+++.+   +    .+ .....|++|++..++
T Consensus       234 v~~~~~-~~---~~~~~~~~dv~~~~~~~~~v~~-~~~~~DilI~~Aav~  278 (399)
T PRK05579        234 VSGPVN-LP---TPAGVKRIDVESAQEMLDAVLA-ALPQADIFIMAAAVA  278 (399)
T ss_pred             eCCCcc-cc---CCCCcEEEccCCHHHHHHHHHH-hcCCCCEEEEccccc
Confidence            998752 11   000111122221   1    11 235689999987654

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.22  E-value=0.095  Score=59.37  Aligned_cols=92  Identities=16%  Similarity=0.170  Sum_probs=56.6

Q ss_pred             ceEEEEccchhHHHH-HHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRAL-AFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai-~~~L~~~G~~v~i~nRt~~~-a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      ++++|+|.||+|+++ |..|.++|++|++.+.+... .++|. ..+.... ...-.+ .+.++|+||-.  .|       
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~-~~gi~~~-~g~~~~-~~~~~d~vV~S--pg-------   72 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLK-AKGARFF-LGHQEE-HVPEDAVVVYS--SS-------   72 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHH-HCCCEEe-CCCCHH-HcCCCCEEEEC--CC-------
Confidence            469999999999999 88999999999999975422 22221 1111110 000000 11223333311  11       


Q ss_pred             CCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866          382 VPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                                         -|...|.+++|+++|++++.-.+++-
T Consensus        73 -------------------I~~~~p~~~~a~~~gi~v~~~~el~~   98 (809)
T PRK14573         73 -------------------ISKDNVEYLSAKSRGNRLVHRAELLA   98 (809)
T ss_pred             -------------------cCCCCHHHHHHHHCCCcEEeHHHHHH
Confidence                               13356889999999999999999863

>PLN02896 cinnamyl-alcohol dehydrogenase

Probab=95.21  E-value=0.057  Score=54.70  Aligned_cols=73  Identities=16%  Similarity=0.037  Sum_probs=51.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--C--c--ccccc---ccccCCCCccEEEE
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--A--A--RPFED---ILNFQPEKGAILAN  369 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~--~--~~~~~---l~~~~~~~~divIn  369 (454)
                      ..+++++||+|+ |..|+.++..|.+.|.+|+++.|+.++++.+...+..  .  .  .++.+   +.+ .+.+.|.||+
T Consensus         7 ~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~d~Vih   85 (353)
T PLN02896          7 ESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSLHLLSKWKEGDRLRLFRADLQEEGSFDE-AVKGCDGVFH   85 (353)
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhhccCCeEEEEECCCCCHHHHHH-HHcCCCEEEE
Confidence            346789999995 7899999999999999999999998877766554421  1  1  12211   222 2356899999


Q ss_pred             CCCC
Q 012866          370 ATPL  373 (454)
Q Consensus       370 at~~  373 (454)
                      +...
T Consensus        86 ~A~~   89 (353)
T PLN02896         86 VAAS   89 (353)
T ss_pred             CCcc
Confidence            8754

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.21  E-value=0.13  Score=49.76  Aligned_cols=104  Identities=21%  Similarity=0.272  Sum_probs=61.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCC-----------eEEEEeCCH----H-----HH-HHHHHHhcCCcccccccc
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGA-----------RVVIFDIDF----E-----RA-KSLASDVMGAARPFEDIL  357 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~-----------~v~i~nRt~----~-----~a-~~la~~~~~~~~~~~~l~  357 (454)
                      .++++.+++++|||.+|-+++..|.+.+.           +|++++|.-    +     .. +.++ +|-.......+|.
T Consensus        21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~-~~~~~~~~~~~L~   99 (254)
T cd00762          21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLA-RFANPERESGDLE   99 (254)
T ss_pred             CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHH-HHcCcccccCCHH
Confidence            56888999999999888888888776543           688888741    1     11 1222 1221111223444


Q ss_pred             ccCCC--CccEEEECCCCCCCCCCCCCCCChhccc------CCcEEEEEecCCCC----CHHHHHHHHC
Q 012866          358 NFQPE--KGAILANATPLGMHPNTDRVPVSEETLR------DYQLVFDAVYTPRK----TRLLKDAEAA  414 (454)
Q Consensus       358 ~~~~~--~~divInat~~g~~p~~~~~~i~~~~l~------~~~~v~D~~y~P~~----T~ll~~A~~~  414 (454)
                      + .++  ++|++|-++..+   .    .|.+++++      +..++|=++ ||..    ||  ++|.+.
T Consensus       100 e-av~~~kptvlIG~S~~~---g----~ft~evv~~Ma~~~~~PIIFaLS-NPt~~aE~tp--e~a~~~  157 (254)
T cd00762         100 D-AVEAAKPDFLIGVSRVG---G----AFTPEVIRAXAEINERPVIFALS-NPTSKAECTA--EEAYTA  157 (254)
T ss_pred             H-HHHhhCCCEEEEeCCCC---C----CCCHHHHHHHhhcCCCCEEEECC-CcCCccccCH--HHHHhh
Confidence            3 334  789999877632   1    25555432      567888886 5543    55  455544

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=95.21  E-value=0.023  Score=49.37  Aligned_cols=37  Identities=24%  Similarity=0.488  Sum_probs=31.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERA  339 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a  339 (454)
                      +++|+|+|+|+.|..++..|+..|+ +++|++.+.=..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~   39 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEP   39 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceee
Confidence            5789999999999999999999999 999999875433

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=95.19  E-value=0.05  Score=54.36  Aligned_cols=71  Identities=25%  Similarity=0.250  Sum_probs=52.1

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC-c--------cccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA-A--------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~-~--------~~~~~l~~~~~~~~divInat~~  373 (454)
                      |+.|||+|.+|.++++.|...|.  ++.+++.+.++++..+.++... .        +...+.+  ..+++|+||.|...
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~--~~~~aDivvitaG~   78 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYD--DCADADIIVITAGP   78 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHH--HhCCCCEEEECCCC
Confidence            47899999999999999998886  7999999988888777666431 1        0111222  35789999987765


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      .-.|
T Consensus        79 ~~kp   82 (307)
T cd05290          79 SIDP   82 (307)
T ss_pred             CCCC
Confidence            4444

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08628 short chain dehydrogenase; Provisional

Probab=95.19  E-value=0.045  Score=52.49  Aligned_cols=46  Identities=24%  Similarity=0.419  Sum_probs=38.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      .++++++++|+|+ ||.|++++..|.+.|++|.+..|+.++. ++.++
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-~~~~~   49 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-EFAEE   49 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-HHHHH
Confidence            3577899999996 6999999999999999999999988765 44443

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=95.19  E-value=0.042  Score=48.39  Aligned_cols=66  Identities=15%  Similarity=0.092  Sum_probs=45.4

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--------cccc-cccc--cCCCCccEEEECCCC
Q 012866          306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--------RPFE-DILN--FQPEKGAILANATPL  373 (454)
Q Consensus       306 vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--------~~~~-~l~~--~~~~~~divInat~~  373 (454)
                      ++|+|+|.+|...++.|++.|.+|+++.|.. +++.+.++ +...        .... ....  .....+|+||.|+..
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa   77 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQ-GLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA   77 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHH-CEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhhe-eEEEEecccceecccccccCcchhccCCCcEEEEEecc
Confidence            6899999999999999999999999999998 87776443 2110        0000 0100  023568999999864

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=95.18  E-value=0.047  Score=53.98  Aligned_cols=30  Identities=27%  Similarity=0.454  Sum_probs=27.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDI  334 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nR  334 (454)
                      +|+|+|+||.|..++..|+..|+ +|+|++.
T Consensus         1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~   31 (291)
T cd01488           1 KILVIGAGGLGCELLKNLALSGFRNIHVIDM   31 (291)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECC
Confidence            58999999999999999999999 9998874

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK08017 oxidoreductase; Provisional

Probab=95.10  E-value=0.046  Score=52.19  Aligned_cols=40  Identities=23%  Similarity=0.334  Sum_probs=36.0

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      ++++|+|+ |++|++++..|.+.|++|.++.|+.++.+.+.
T Consensus         3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~~~~~~   43 (256)
T PRK08017          3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDDVARMN   43 (256)
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHhHHHH
Confidence            57999998 89999999999999999999999998876654

>PRK06914 short chain dehydrogenase; Provisional

Probab=95.10  E-value=0.056  Score=52.53  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=37.8

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      ++.++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++.+.
T Consensus         3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~   46 (280)
T PRK06914          3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQ   46 (280)
T ss_pred             CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHH
Confidence            578999996 7999999999999999999999999887777554

>TIGR01289 LPOR light-dependent protochlorophyllide reductase

Probab=95.09  E-value=0.055  Score=54.03  Aligned_cols=45  Identities=24%  Similarity=0.290  Sum_probs=40.3

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhc
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G-~~v~i~nRt~~~a~~la~~~~  347 (454)
                      +|+++|.|+ +|+|++++..|.+.| ++|++++|+.++++++++++.
T Consensus         3 ~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~~~~~~~l~   49 (314)
T TIGR01289         3 KPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKAEQAAKSLG   49 (314)
T ss_pred             CCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhc
Confidence            678999997 599999999999999 799999999999888887764

This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.

>PRK06179 short chain dehydrogenase; Provisional

Probab=95.08  E-value=0.015  Score=56.27  Aligned_cols=39  Identities=31%  Similarity=0.332  Sum_probs=34.1

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKS  341 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~  341 (454)
                      +++++|+|+ ||.|++++..|.+.|++|++..|+.++.+.
T Consensus         4 ~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~~   43 (270)
T PRK06179          4 SKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAAP   43 (270)
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhccc
Confidence            578999995 799999999999999999999999776543

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=95.07  E-value=0.057  Score=51.20  Aligned_cols=46  Identities=39%  Similarity=0.547  Sum_probs=39.2

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +.+++++|+|+ |+.|++++..|.+.|++|+++.|+.++.+++...+
T Consensus         4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l   50 (251)
T PRK12826          4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELV   50 (251)
T ss_pred             CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45789999995 79999999999999999999999987776665544

>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like

Probab=95.04  E-value=0.047  Score=52.35  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=29.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~  336 (454)
                      +|+|+|+||.|..++..|+..|+ +++|++.+.
T Consensus         1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~   33 (234)
T cd01484           1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDT   33 (234)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999999 999998764

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou

>PRK08340 glucose-1-dehydrogenase; Provisional

Probab=95.03  E-value=0.055  Score=52.06  Aligned_cols=42  Identities=24%  Similarity=0.284  Sum_probs=37.4

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+|+ ||.|++++..|.+.|++|++.+|+.++.+++.+++
T Consensus         2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   44 (259)
T PRK08340          2 NVLVTASSRGIGFNVARELLKKGARVVISSRNEENLEKALKEL   44 (259)
T ss_pred             eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH
Confidence            6899996 69999999999999999999999998887777665

>PRK07791 short chain dehydrogenase; Provisional

Probab=95.03  E-value=0.053  Score=53.28  Aligned_cols=46  Identities=41%  Similarity=0.734  Sum_probs=38.9

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH---------HHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF---------ERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~---------~~a~~la~~~  346 (454)
                      +++|+++|.|+ +|+|++++..|++.|++|+++.|+.         ++++++++++
T Consensus         4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l   59 (286)
T PRK07791          4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEI   59 (286)
T ss_pred             cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHH
Confidence            56899999996 5999999999999999999988875         6677776665

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=95.02  E-value=0.074  Score=51.22  Aligned_cols=69  Identities=22%  Similarity=0.302  Sum_probs=46.5

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCC-----------CeEEEEeCCH------------------HHHHHHHHHhcCC-cc
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRG-----------ARVVIFDIDF------------------ERAKSLASDVMGA-AR  351 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G-----------~~v~i~nRt~------------------~~a~~la~~~~~~-~~  351 (454)
                      +..+|+|+|+||.|..++..|++.|           .+|+|++.+.                  .|++.+++++... .+
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~   89 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT   89 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence            4678999999999999999999874           2888888542                  3566666665421 11


Q ss_pred             cccc----c--cccCCCCccEEEECC
Q 012866          352 PFED----I--LNFQPEKGAILANAT  371 (454)
Q Consensus       352 ~~~~----l--~~~~~~~~divInat  371 (454)
                      .++.    +  .. ...++|+||+|+
T Consensus        90 ~i~a~~~~~~~~~-~~~~~DiVi~av  114 (244)
T TIGR03736        90 DWTAHPERVERSS-TLHRPDIVIGCV  114 (244)
T ss_pred             eEEEEEeeeCchh-hhcCCCEEEECC
Confidence            1211    1  11 235689999987

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=95.01  E-value=0.061  Score=50.86  Aligned_cols=46  Identities=43%  Similarity=0.663  Sum_probs=39.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~  346 (454)
                      +.+++++|+|+ |++|+.++..|.+.|++|++. .|+.++.+++...+
T Consensus         3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~   50 (247)
T PRK05565          3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEI   50 (247)
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            56789999996 899999999999999998888 99988877776654

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=94.98  E-value=0.046  Score=53.22  Aligned_cols=72  Identities=29%  Similarity=0.469  Sum_probs=51.6

Q ss_pred             EEEEcc-chhHHHHHHHHHHCC----CeEEEEeCCHHHHHHHHHHhcCCc-----cc---cccccccCCCCccEEEECCC
Q 012866          306 FVLAGA-GGAGRALAFGAKSRG----ARVVIFDIDFERAKSLASDVMGAA-----RP---FEDILNFQPEKGAILANATP  372 (454)
Q Consensus       306 vlViGa-GG~arai~~~L~~~G----~~v~i~nRt~~~a~~la~~~~~~~-----~~---~~~l~~~~~~~~divInat~  372 (454)
                      +.|||+ |.+|..+++.|...|    .+|++++++.++++..+.++....     ..   ..++.+ ...++|+||.+..
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~-~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYE-AFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHH-HhCCCCEEEECCC
Confidence            468999 788999999999888    489999999988877766553211     01   122223 4678999999887


Q ss_pred             CCCCCC
Q 012866          373 LGMHPN  378 (454)
Q Consensus       373 ~g~~p~  378 (454)
                      .+-.|.
T Consensus        80 ~~~~~g   85 (263)
T cd00650          80 VGRKPG   85 (263)
T ss_pred             CCCCcC
Confidence            655443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.96  E-value=0.07  Score=53.03  Aligned_cols=48  Identities=35%  Similarity=0.561  Sum_probs=39.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-~~~a~~la~~~  346 (454)
                      ..+++|+++|+|+ ||.|++++..|.+.|++|++.+|. .++++++++++
T Consensus         8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i   57 (306)
T PRK07792          8 TDLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEI   57 (306)
T ss_pred             cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHH
Confidence            5688999999997 599999999999999999888874 45666666554

>PRK07102 short chain dehydrogenase; Provisional

Probab=94.96  E-value=0.062  Score=51.06  Aligned_cols=43  Identities=33%  Similarity=0.431  Sum_probs=37.8

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++|+|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus         2 ~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~   45 (243)
T PRK07102          2 KKILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDL   45 (243)
T ss_pred             cEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHH
Confidence            57999995 79999999999999999999999998887776554

>PRK06841 short chain dehydrogenase; Provisional

Probab=94.93  E-value=0.065  Score=51.18  Aligned_cols=40  Identities=35%  Similarity=0.532  Sum_probs=35.8

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++++|+++|+|+ ||.|++++..|.+.|++|++++|+.+..
T Consensus        12 ~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~   52 (255)
T PRK06841         12 DLSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA   52 (255)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence            467899999996 7999999999999999999999997653

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=94.91  E-value=0.019  Score=59.62  Aligned_cols=71  Identities=15%  Similarity=0.129  Sum_probs=51.8

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH-----HHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF-----ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~-----~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      .+++|+|+|||.|-.|++-+..|...|++|+|.-|..     +++.+.|..-+.   .+.++.+ .++.+|+|++.+|..
T Consensus        33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF---~v~~~~E-a~~~ADvVviLlPDt  108 (487)
T PRK05225         33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGF---KVGTYEE-LIPQADLVINLTPDK  108 (487)
T ss_pred             HhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCC---ccCCHHH-HHHhCCEEEEcCChH
Confidence            4679999999999999999999999999999877764     233333333233   2234444 457899999999864

>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional

Probab=94.90  E-value=0.066  Score=51.38  Aligned_cols=46  Identities=37%  Similarity=0.615  Sum_probs=37.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.. .+++.+++
T Consensus         5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~-~~~~~~~~   51 (260)
T PRK12823          5 RFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSEL-VHEVAAEL   51 (260)
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchH-HHHHHHHH
Confidence            367899999996 69999999999999999999999853 34454443

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=94.85  E-value=0.034  Score=54.33  Aligned_cols=106  Identities=16%  Similarity=0.125  Sum_probs=59.3

Q ss_pred             eEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSR-GARV-VIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~-G~~v-~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      ++.|+|+|.+|+.++..+.+. +.++ .++.|. ...+...+.++.....+.+++++ ..+.|+||.|||....     .
T Consensus         3 rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~-~~~~~~~~~~~~~~~~~~d~~~l-~~~~DvVve~t~~~~~-----~   75 (265)
T PRK13303          3 KVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPE-HSIDAVRRALGEAVRVVSSVDAL-PQRPDLVVECAGHAAL-----K   75 (265)
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCceEEEEEEcC-CCHHHHhhhhccCCeeeCCHHHh-ccCCCEEEECCCHHHH-----H
Confidence            689999999999999999876 4454 344443 22223333332211122333332 2468999999985422     1


Q ss_pred             CCChhcccCCcEEEEEec----CCC-CCHHHHHHHHCCCc
Q 012866          383 PVSEETLRDYQLVFDAVY----TPR-KTRLLKDAEAAGAI  417 (454)
Q Consensus       383 ~i~~~~l~~~~~v~D~~y----~P~-~T~ll~~A~~~G~~  417 (454)
                      .+-...|..+.-|+-..-    .+. ...+.+.|++.|.+
T Consensus        76 e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~  115 (265)
T PRK13303         76 EHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGAR  115 (265)
T ss_pred             HHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCE
Confidence            133345665544443321    121 24467778888876

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.84  E-value=0.052  Score=55.06  Aligned_cols=69  Identities=16%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-cCCcc--------c---cccccccCCCCccEEEECC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV-MGAAR--------P---FEDILNFQPEKGAILANAT  371 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~-~~~~~--------~---~~~l~~~~~~~~divInat  371 (454)
                      .++.|+|+|.+|.+++..|++.| +++++.|+++..+++.+.- +....        .   ..++.+ .+..+|+||-|+
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~-a~~~aDlVilav   85 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAE-AANCADVVVMGV   85 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHH-HHhcCCEEEEEe
Confidence            57999999999999999999988 7889999999988886531 11100        0   112222 346789999999


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      |..
T Consensus        86 ps~   88 (341)
T PRK12439         86 PSH   88 (341)
T ss_pred             CHH
Confidence            853

>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.84  E-value=0.083  Score=55.44  Aligned_cols=74  Identities=28%  Similarity=0.355  Sum_probs=51.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC--HHHHHHHHHHhcCCcc--cccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID--FERAKSLASDVMGAAR--PFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt--~~~a~~la~~~~~~~~--~~~~---l~~~------~~~~~d  365 (454)
                      .+++++++|+|+ ||+|++++..|.+.|++|++++|.  .++.++++++++...+  ++.+   +..+      .....|
T Consensus       207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id  286 (450)
T PRK08261        207 PLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDITAPDAPARIAEHLAERHGGLD  286 (450)
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhCCCCC
Confidence            457899999997 899999999999999999998884  4556666666553322  2211   1110      123579


Q ss_pred             EEEECCCC
Q 012866          366 ILANATPL  373 (454)
Q Consensus       366 ivInat~~  373 (454)
                      +||++...
T Consensus       287 ~vi~~AG~  294 (450)
T PRK08261        287 IVVHNAGI  294 (450)
T ss_pred             EEEECCCc
Confidence            99998754

>PRK05599 hypothetical protein; Provisional

Probab=94.84  E-value=0.063  Score=51.39  Aligned_cols=42  Identities=26%  Similarity=0.256  Sum_probs=36.8

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++|.|+ +|.|++++..|. .|.+|+++.|+.++++++++++
T Consensus         1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~~~~~~~~l   43 (246)
T PRK05599          1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEAAQGLASDL   43 (246)
T ss_pred             CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHHHHHHHHHH
Confidence            35899997 599999999998 5999999999999999887766

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.83  E-value=0.053  Score=54.13  Aligned_cols=66  Identities=17%  Similarity=0.178  Sum_probs=47.5

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--ccc---cccccCCCCccEEEECCC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFE---DILNFQPEKGAILANATP  372 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~---~l~~~~~~~~divInat~  372 (454)
                      +++|+|+ |-.|+.++.+|.+.|.+|.++.|+.+++..+.. .+.+.+  ++.   .+.. .+.++|.||++.+
T Consensus         2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~-~~v~~v~~Dl~d~~~l~~-al~g~d~Vi~~~~   73 (317)
T CHL00194          2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKE-WGAELVYGDLSLPETLPP-SFKGVTAIIDAST   73 (317)
T ss_pred             EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhh-cCCEEEECCCCCHHHHHH-HHCCCCEEEECCC
Confidence            6899995 889999999999999999999999877654432 222221  222   2333 3567899999865

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=94.81  E-value=0.095  Score=51.71  Aligned_cols=42  Identities=24%  Similarity=0.284  Sum_probs=35.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSL  342 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~l  342 (454)
                      +.+.+|+|+|+||.|..++..|+..|+ +|+|++.+.-....|
T Consensus        17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL   59 (286)
T cd01491          17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDL   59 (286)
T ss_pred             HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhc
Confidence            456899999999999999999999999 999999765443333

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=94.80  E-value=0.049  Score=53.40  Aligned_cols=72  Identities=18%  Similarity=0.167  Sum_probs=58.7

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      .+++|+|.|||.|.=|+|=+..|.+.|.+|.|-.|....+-+.|++-|..+.++++    +.+.+|+|++-+|--.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~e----a~k~ADvim~L~PDe~   86 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEE----AAKRADVVMILLPDEQ   86 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHH----HhhcCCEEEEeCchhh
Confidence            57899999999999999999999999999999999888877777776655545444    3467899999888543

>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional

Probab=94.79  E-value=0.074  Score=50.99  Aligned_cols=44  Identities=30%  Similarity=0.486  Sum_probs=38.1

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +|+++|+|+ |+.|++++..|++.|++|.+++|+.++.+++++.+
T Consensus         2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~   46 (259)
T PRK12384          2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEI   46 (259)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            478999997 58999999999999999999999988877776554

>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.79  E-value=0.083  Score=50.61  Aligned_cols=72  Identities=21%  Similarity=0.271  Sum_probs=46.9

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAIL  367 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~div  367 (454)
                      +++|+++|+|+ ||.|++++..|.+.|++|.+..| +.+.++++... +...  .++.+   +..+      .....|+|
T Consensus         5 l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id~l   83 (255)
T PRK06463          5 FKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAENEAKELREK-GVFTIKCDVGNRDQVKKSKEVVEKEFGRVDVL   83 (255)
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHHHHcCCCCEE
Confidence            56899999996 79999999999999998877655 44455555432 2211  12211   1110      12457999


Q ss_pred             EECCCC
Q 012866          368 ANATPL  373 (454)
Q Consensus       368 Inat~~  373 (454)
                      |++...
T Consensus        84 i~~ag~   89 (255)
T PRK06463         84 VNNAGI   89 (255)
T ss_pred             EECCCc
Confidence            998765

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.78  E-value=0.074  Score=50.58  Aligned_cols=46  Identities=26%  Similarity=0.361  Sum_probs=37.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~  346 (454)
                      +++++++|+|+ ||.|++++..|.+.|++|+++.|+. ++.+.++.++
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l   51 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEI   51 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHH
Confidence            46789999996 8999999999999999999999975 3455555443

>PLN02986 cinnamyl-alcohol dehydrogenase family protein

Probab=94.77  E-value=0.065  Score=53.40  Aligned_cols=41  Identities=22%  Similarity=0.184  Sum_probs=34.8

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      .+++++|.|+ |.+|+.++..|.+.|.+|++..|+.++++.+
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~   45 (322)
T PLN02986          4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRKKT   45 (322)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHH
Confidence            4789999995 8999999999999999999888887655443

>PRK06114 short chain dehydrogenase; Provisional

Probab=94.74  E-value=0.089  Score=50.42  Aligned_cols=47  Identities=30%  Similarity=0.557  Sum_probs=38.3

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~  346 (454)
                      ++++|+++|.|+ ||.|++++..|.+.|++|.+..|+.+ ..+++++++
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l   53 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHI   53 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH
Confidence            467899999996 59999999999999999999998754 445555544

>PRK06181 short chain dehydrogenase; Provisional

Probab=94.72  E-value=0.078  Score=50.95  Aligned_cols=43  Identities=35%  Similarity=0.542  Sum_probs=37.9

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++|+|+ |+.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         2 ~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l   45 (263)
T PRK06181          2 KVVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQEL   45 (263)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            57999997 79999999999999999999999988887776654

>PRK06223 malate dehydrogenase; Reviewed

Probab=94.71  E-value=0.087  Score=52.47  Aligned_cols=72  Identities=22%  Similarity=0.245  Sum_probs=50.9

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC------c--cc-cccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA------A--RP-FEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~------~--~~-~~~l~~~~~~~~divInat~~  373 (454)
                      +++.|||+|-+|..+++.++..|. +|++++++.++++..+.++...      .  +. ..+.+  ...++|+||.|...
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~~--~~~~aDiVii~~~~   80 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDYE--DIAGSDVVVITAGV   80 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCHH--HHCCCCEEEECCCC
Confidence            479999999999999999998876 9999999988776655433211      0  11 11222  35789999998765


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      ...|
T Consensus        81 p~~~   84 (307)
T PRK06223         81 PRKP   84 (307)
T ss_pred             CCCc
Confidence            4444

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=94.68  E-value=0.077  Score=53.52  Aligned_cols=91  Identities=13%  Similarity=0.030  Sum_probs=56.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccc---------------cccccccCCCCccEEE
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP---------------FEDILNFQPEKGAILA  368 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~---------------~~~l~~~~~~~~divI  368 (454)
                      .++.|||+|.+|.+++..|.+.|.+|++++|+.. .+.+.+ .+....+               ..+. + ....+|+||
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~D~vi   78 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARI-GDELRA-HGLTLTDYRGRDVRVPPSAIAFSTDP-A-ALATADLVL   78 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHH-HHHHHh-cCceeecCCCcceecccceeEeccCh-h-hccCCCEEE
Confidence            3699999999999999999999999999999753 344433 2211100               0111 2 245789999


Q ss_pred             ECCCCCCCCCCCCCCCC--hhcccCCcEEEEEecCC
Q 012866          369 NATPLGMHPNTDRVPVS--EETLRDYQLVFDAVYTP  402 (454)
Q Consensus       369 nat~~g~~p~~~~~~i~--~~~l~~~~~v~D~~y~P  402 (454)
                      -|++.....   . .+.  ...+.++.+++++....
T Consensus        79 l~vk~~~~~---~-~~~~l~~~~~~~~iii~~~nG~  110 (341)
T PRK08229         79 VTVKSAATA---D-AAAALAGHARPGAVVVSFQNGV  110 (341)
T ss_pred             EEecCcchH---H-HHHHHHhhCCCCCEEEEeCCCC
Confidence            988753211   0 011  11245667777775443

>PRK06198 short chain dehydrogenase; Provisional

Probab=94.68  E-value=0.079  Score=50.77  Aligned_cols=46  Identities=30%  Similarity=0.515  Sum_probs=39.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGAR-VVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~-v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|+|+ |+.|+.++..|.+.|++ |++++|+.++.+.+.+.+
T Consensus         4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l   51 (260)
T PRK06198          4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAEL   51 (260)
T ss_pred             CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHH
Confidence            56889999996 69999999999999996 999999988777665544

>PLN02602 lactate dehydrogenase

Probab=94.67  E-value=0.1  Score=53.12  Aligned_cols=72  Identities=15%  Similarity=0.204  Sum_probs=52.9

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-----ccc---ccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-----RPF---EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-----~~~---~~l~~~~~~~~divInat~~  373 (454)
                      +++.|||+|.+|.++++.|...|.  ++.+++++.++++..+.++....     ..+   .+.+  ..+++|+||-|...
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy~--~~~daDiVVitAG~  115 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDYA--VTAGSDLCIVTAGA  115 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCHH--HhCCCCEEEECCCC
Confidence            699999999999999999998886  79999999988887776664311     111   1222  25789999987765


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      .-.|
T Consensus       116 ~~k~  119 (350)
T PLN02602        116 RQIP  119 (350)
T ss_pred             CCCc
Confidence            4333

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=94.66  E-value=0.12  Score=50.47  Aligned_cols=92  Identities=25%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccccc----cccc-CCCCccEEEECCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFED----ILNF-QPEKGAILANATPLG  374 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~~----l~~~-~~~~~divInat~~g  374 (454)
                      .+++|+|+|+|++|..++..++.+|+ +|++++++.+|. +++++++... ++.++    +.+. ....+|++++++...
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~-~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~  198 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRR-ELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGAT  198 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH-HHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCCh
Confidence            57899999999999999998899999 588888888775 5677777532 22211    1110 123589999988532


Q ss_pred             CCCCCCCCCCChhcccCCcEEEEEe
Q 012866          375 MHPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       375 ~~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      .     ......+.++++..++.+-
T Consensus       199 ~-----~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       199 A-----AVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             H-----HHHHHHHHhcCCCEEEEec
Confidence            1     0011124566666666655

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=94.66  E-value=0.14  Score=51.41  Aligned_cols=69  Identities=26%  Similarity=0.231  Sum_probs=50.7

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g  374 (454)
                      .+.+++|.|+|++|.+++..++..|++|+.+.++.++ .++++++|... +...+.   .....|+++.+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~-~~~a~~~Ga~~vi~~~~~---~~~~~d~~i~~~~~~  234 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAA-RRLALALGAASAGGAYDT---PPEPLDAAILFAPAG  234 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHH-HHHHHHhCCceecccccc---CcccceEEEECCCcH
Confidence            4789999999999999888888899998889999888 46778888643 221211   113468888777653

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=94.64  E-value=0.073  Score=53.19  Aligned_cols=35  Identities=14%  Similarity=0.006  Sum_probs=32.0

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      ..+++|+|+|.+|..++..|++.|.+|+++.|+..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~   39 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY   39 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            35799999999999999999999999999999864

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=94.64  E-value=0.034  Score=56.48  Aligned_cols=91  Identities=16%  Similarity=0.056  Sum_probs=55.5

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcC-C---ccccccccccCCCCccEEEECCCCCCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMG-A---ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~-G~~v~i~nRt~~~a~~la~~~~~-~---~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      .++.|+|| |.+|+.++..|.+. +++++.+.++.++.+.+++.++. .   ...++++.+....+.|+|+.|||-+...
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~~   82 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVSM   82 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHHH
Confidence            57999997 78899999999877 45765544444455555554431 1   1123333321235689999999875432


Q ss_pred             CCCCCCCChhcccCCcEEEEEe
Q 012866          378 NTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                           .+-...++.+..|+|+.
T Consensus        83 -----~~v~~a~~aG~~VID~S   99 (343)
T PRK00436         83 -----DLAPQLLEAGVKVIDLS   99 (343)
T ss_pred             -----HHHHHHHhCCCEEEECC
Confidence                 12233445567777775

>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase

Probab=94.60  E-value=0.082  Score=50.33  Aligned_cols=44  Identities=32%  Similarity=0.465  Sum_probs=38.6

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +|++||.|+ |+.|++++..|.+.|.+|+++.|+.++.+++.+++
T Consensus         1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~   45 (255)
T TIGR01963         1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVA   45 (255)
T ss_pred             CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            367999995 79999999999999999999999998888877654

This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.

>PRK10637 cysG siroheme synthase; Provisional

Probab=94.59  E-value=0.066  Score=56.51  Aligned_cols=74  Identities=19%  Similarity=0.083  Sum_probs=47.8

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      ..+++|++|||+|+|.+|..=+..|.+.|++|+|++.... ..+++++.-...+.. .+...-.+.++++||.||.
T Consensus         7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~-~~~~~~dl~~~~lv~~at~   81 (457)
T PRK10637          7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVE-GPFDESLLDTCWLAIAATD   81 (457)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEe-CCCChHHhCCCEEEEECCC
Confidence            3568899999999999988878899999999999987653 334444321111100 0111102456778887774

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.58  E-value=0.069  Score=54.58  Aligned_cols=71  Identities=13%  Similarity=0.093  Sum_probs=48.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCHH-----HHHHHHHHh-cCCcc---c-------ccccccc
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRG-------ARVVIFDIDFE-----RAKSLASDV-MGAAR---P-------FEDILNF  359 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G-------~~v~i~nRt~~-----~a~~la~~~-~~~~~---~-------~~~l~~~  359 (454)
                      ..++.|||+|..|.|++..|.+.|       .+|.+|.|+.+     .++.+-+.- +..+.   .       ..++.+ 
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~e-   89 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKE-   89 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHH-
Confidence            468999999999999999999887       58999999976     234333221 11111   1       123333 


Q ss_pred             CCCCccEEEECCCCC
Q 012866          360 QPEKGAILANATPLG  374 (454)
Q Consensus       360 ~~~~~divInat~~g  374 (454)
                      .++++|+||-++|..
T Consensus        90 av~~aDiIvlAVPsq  104 (365)
T PTZ00345         90 AVEDADLLIFVIPHQ  104 (365)
T ss_pred             HHhcCCEEEEEcChH
Confidence            356789999988864

>PRK07904 short chain dehydrogenase; Provisional

Probab=94.57  E-value=0.076  Score=51.15  Aligned_cols=45  Identities=18%  Similarity=0.219  Sum_probs=37.4

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCC-CeEEEEeCCHHH-HHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRG-ARVVIFDIDFER-AKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G-~~v~i~nRt~~~-a~~la~~~  346 (454)
                      .+++++|.|+ ||+|++++..|.+.| ++|+++.|+.++ .+++++++
T Consensus         7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l   54 (253)
T PRK07904          7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQM   54 (253)
T ss_pred             CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHH
Confidence            3578999996 699999999999986 699999999876 66666554

>PRK06523 short chain dehydrogenase; Provisional

Probab=94.51  E-value=0.069  Score=51.22  Aligned_cols=39  Identities=31%  Similarity=0.334  Sum_probs=35.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      .+++|+++|.|+ ||.|++++..|++.|++|+++.|+.+.
T Consensus         6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~   45 (260)
T PRK06523          6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPD   45 (260)
T ss_pred             CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhh
Confidence            577899999996 799999999999999999999998654

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.49  E-value=0.18  Score=52.51  Aligned_cols=36  Identities=25%  Similarity=0.301  Sum_probs=32.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      .++++|+|-|++|++++..|.++|.+|+.++++.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~   38 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEA   38 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            367999999999999999999999999999987654

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=94.49  E-value=0.1  Score=53.17  Aligned_cols=70  Identities=14%  Similarity=0.181  Sum_probs=51.3

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccc---ccccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPF---EDILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~---~~l~~~~~~~~divInat~  372 (454)
                      .+++|+|.|+|+.|.+++..++.+|++|+++.++.++...++++++... +..   +++.+ ....+|++|+++.
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~-~~~~~D~vid~~g  256 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKA-AIGTMDYIIDTVS  256 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHh-hcCCCCEEEECCC
Confidence            4789999999999999999999999988888777777666777777532 111   12222 1235799999886

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=94.46  E-value=0.075  Score=53.87  Aligned_cols=69  Identities=14%  Similarity=0.147  Sum_probs=46.7

Q ss_pred             eEEEEccchhHHHHHHHHHHCC--------CeEEEEeC-----CHHHHHHHHHHhc-CCc---cc-------cccccccC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRG--------ARVVIFDI-----DFERAKSLASDVM-GAA---RP-------FEDILNFQ  360 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G--------~~v~i~nR-----t~~~a~~la~~~~-~~~---~~-------~~~l~~~~  360 (454)
                      ++.|||+|..|.|++..|++.|        .+|++|.|     +.+-.+.+-+... ..+   +.       ..++.+ .
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~e-a   79 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVE-A   79 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHH-H
Confidence            4789999999999999999988        79999999     4444444433221 111   11       123333 3


Q ss_pred             CCCccEEEECCCCC
Q 012866          361 PEKGAILANATPLG  374 (454)
Q Consensus       361 ~~~~divInat~~g  374 (454)
                      +.++|+||-++|..
T Consensus        80 l~~ADiIIlAVPs~   93 (342)
T TIGR03376        80 AKGADILVFVIPHQ   93 (342)
T ss_pred             HhcCCEEEEECChH
Confidence            56789999999864

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase

Probab=94.44  E-value=0.05  Score=55.02  Aligned_cols=41  Identities=24%  Similarity=0.331  Sum_probs=34.9

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      +++++||.|+ |+.|++++..|.+.|.+|++++|+.......
T Consensus         3 ~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~   44 (349)
T TIGR02622         3 QGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPNL   44 (349)
T ss_pred             CCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchhH
Confidence            4789999996 7899999999999999999999987654443

Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.

>PLN02214 cinnamoyl-CoA reductase

Probab=94.43  E-value=0.086  Score=53.31  Aligned_cols=38  Identities=21%  Similarity=0.092  Sum_probs=34.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      +++++++|.|+ |..|+.++..|.+.|.+|+.+.|+.++
T Consensus         8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~   46 (342)
T PLN02214          8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDD   46 (342)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchh
Confidence            56789999997 899999999999999999999998765

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=94.39  E-value=0.1  Score=49.09  Aligned_cols=114  Identities=20%  Similarity=0.184  Sum_probs=72.3

Q ss_pred             eEEEEccchhHHHHHHHHHHC--CC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSR--GA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~--G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      ++.++|.|.+|..++..+.+-  ++ -+.+++|+.++++++.+.++....  .++++ .....|++|-|.+..-.     
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~--s~ide-~~~~~DlvVEaAS~~Av-----   73 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCV--SDIDE-LIAEVDLVVEAASPEAV-----   73 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCcc--ccHHH-HhhccceeeeeCCHHHH-----
Confidence            578999999999998876643  35 689999999999999988876443  34444 33678999998874211     


Q ss_pred             CCCChhcccCCcEEEEEecC----CC-CCHHHHHHHHCCCc------eeccHHHHH
Q 012866          382 VPVSEETLRDYQLVFDAVYT----PR-KTRLLKDAEAAGAI------IVSGVEMFL  426 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~y~----P~-~T~ll~~A~~~G~~------~~~Gl~mlv  426 (454)
                      ..+.+..|..+.-++=++-.    |. ...+...|+..|++      .+.|++.|-
T Consensus        74 ~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~rv~~pSGAiGGlD~l~  129 (255)
T COG1712          74 REYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGARVYLPSGAIGGLDALA  129 (255)
T ss_pred             HHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCcEEEecCccchhHHHHH
Confidence            01222334443322223222    22 23455567777765      467888664

>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.37  E-value=0.098  Score=49.74  Aligned_cols=45  Identities=20%  Similarity=0.482  Sum_probs=37.5

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVI-FDIDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i-~nRt~~~a~~la~~~  346 (454)
                      .+++++|.|+ ||+|++++..|.+.|++|.+ ..|+.++.+++++++
T Consensus         3 ~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~   49 (250)
T PRK08063          3 SGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEI   49 (250)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4689999996 69999999999999997665 688888887776655

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=94.35  E-value=0.1  Score=58.25  Aligned_cols=38  Identities=26%  Similarity=0.432  Sum_probs=34.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS  341 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~  341 (454)
                      ++|.|||+|-||+.|+..++..|++|++++++.+..+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~  351 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDL  351 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            68999999999999999999999999999999886543

>PRK08264 short chain dehydrogenase; Validated

Probab=94.35  E-value=0.079  Score=50.03  Aligned_cols=41  Identities=32%  Similarity=0.472  Sum_probs=36.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHH
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFERAKS  341 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~-~v~i~nRt~~~a~~  341 (454)
                      +.+++++|+|+ |+.|++++..|.+.|+ +|+++.|+.+++++
T Consensus         4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~   46 (238)
T PRK08264          4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESVTD   46 (238)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhhhh
Confidence            45789999995 8999999999999999 99999999887654

>TIGR02415 23BDH acetoin reductases

Probab=94.34  E-value=0.11  Score=49.64  Aligned_cols=43  Identities=26%  Similarity=0.438  Sum_probs=37.6

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      |+++|+|+ |+.|++++..|.+.|++|+++.|+.++++++..++
T Consensus         1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l   44 (254)
T TIGR02415         1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEI   44 (254)
T ss_pred             CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46899995 79999999999999999999999988887776654

One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.33  E-value=0.087  Score=52.26  Aligned_cols=37  Identities=22%  Similarity=0.155  Sum_probs=32.5

Q ss_pred             CceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          303 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       303 ~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ++++||.| +|..|+.++..|.+.|.+|.++.|+.++.
T Consensus         4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~   41 (322)
T PLN02662          4 GKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDP   41 (322)
T ss_pred             CCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCch
Confidence            68999999 48999999999999999999888876543

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=94.33  E-value=0.058  Score=56.36  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=48.5

Q ss_pred             eEEEEccchhHHHHHH--HHH---H-CCCeEEEEeCCHHHHHHHHHHhcC----C--ccc---cccccccCCCCccEEEE
Q 012866          305 MFVLAGAGGAGRALAF--GAK---S-RGARVVIFDIDFERAKSLASDVMG----A--ARP---FEDILNFQPEKGAILAN  369 (454)
Q Consensus       305 ~vlViGaGG~arai~~--~L~---~-~G~~v~i~nRt~~~a~~la~~~~~----~--~~~---~~~l~~~~~~~~divIn  369 (454)
                      ++.|||+|.+|.+.+.  .+.   . .|.+|.++++++++++........    .  ...   ..++.+ .+.++|+||+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~e-al~~AD~Vi~   80 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRRE-ALDGADFVIN   80 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHH-HhcCCCEEEE
Confidence            5899999987776544  454   2 345899999999998877554321    0  011   123333 4678999999


Q ss_pred             CCCCCCCCC
Q 012866          370 ATPLGMHPN  378 (454)
Q Consensus       370 at~~g~~p~  378 (454)
                      +.++|-.+.
T Consensus        81 ai~~~~~~~   89 (423)
T cd05297          81 TIQVGGHEY   89 (423)
T ss_pred             eeEecCccc
Confidence            999765443

linked to 3D####ucture

>PRK08936 glucose-1-dehydrogenase; Provisional

Probab=94.32  E-value=0.13  Score=49.56  Aligned_cols=47  Identities=34%  Similarity=0.487  Sum_probs=37.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-~~~a~~la~~~  346 (454)
                      .+++|+++|+|+ ||.|++++..|.+.|++|++..|+ .+.++.+.+++
T Consensus         4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l   52 (261)
T PRK08936          4 DLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEI   52 (261)
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            467899999996 589999999999999988888884 44555555544

>PRK12747 short chain dehydrogenase; Provisional

Probab=94.31  E-value=0.11  Score=49.58  Aligned_cols=45  Identities=31%  Similarity=0.411  Sum_probs=36.6

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~n-Rt~~~a~~la~~~  346 (454)
                      ++|+++|.|+ ||.|++++..|++.|++|.+.. |+.++.++++.++
T Consensus         3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~   49 (252)
T PRK12747          3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEI   49 (252)
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence            4789999996 6999999999999999988864 6667766665554

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=94.29  E-value=0.96  Score=45.70  Aligned_cols=163  Identities=13%  Similarity=0.079  Sum_probs=100.8

Q ss_pred             ccCHHHHHHHHHhcCCCceEEeccc------CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEE
Q 012866          186 SKGPILHNPTFRHVNYNGIYVPMFV------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTII  259 (454)
Q Consensus       186 S~SP~~hn~~f~~~gl~~~y~~~~~------~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~  259 (454)
                      +|+-.=|..+...||.+..|.....      |.+++..+.|... +.++-+=-|-...+..+.       +... | -|+
T Consensus        57 TRTR~SFE~A~~~LGg~~i~l~~~~s~~~kgEsl~Dtarvls~y-~D~iviR~~~~~~~~~~a-------~~~~-v-PVI  126 (334)
T PRK12562         57 TRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRM-YDGIQYRGHGQEVVETLA-------EYAG-V-PVW  126 (334)
T ss_pred             chhHHHHHHHHHHcCCeEEEeCCccccCCCCcCHHHHHHHHHHh-CCEEEEECCchHHHHHHH-------HhCC-C-CEE
Confidence            4566668899999999988875432      5788888877554 777777765444333232       2221 1 133


Q ss_pred             EeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc--hhHHHHHHHHHHCCCeEEEEeCCH-
Q 012866          260 RRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG--GAGRALAFGAKSRGARVVIFDIDF-  336 (454)
Q Consensus       260 ~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG--G~arai~~~L~~~G~~v~i~nRt~-  336 (454)
                      +-   +.-..+=|-...=+..|++..+           +..++|.++.++|-+  .++++.+..++..|++|+++.... 
T Consensus       127 Na---~~~~~HPtQaLaDl~Ti~e~~g-----------~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~  192 (334)
T PRK12562        127 NG---LTNEFHPTQLLADLLTMQEHLP-----------GKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQAC  192 (334)
T ss_pred             EC---CCCCCChHHHHHHHHHHHHHhC-----------CCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCccc
Confidence            32   1112444554443444433221           124788999999975  789999999999999999988542 


Q ss_pred             -------HHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          337 -------ERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       337 -------~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                             ++++++++..+....-.+++.+ .++++|+|...+=.
T Consensus       193 ~~~~~~~~~~~~~~~~~g~~~~~~~d~~~-a~~~aDvvyt~~w~  235 (334)
T PRK12562        193 WPEASLVAECSALAQKHGGKITLTEDIAA-GVKGADFIYTDVWV  235 (334)
T ss_pred             CCcHHHHHHHHHHHHHcCCeEEEEcCHHH-HhCCCCEEEEcCcc
Confidence                   3444555555544323345555 56789999876533

>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.29  E-value=0.1  Score=49.64  Aligned_cols=47  Identities=28%  Similarity=0.416  Sum_probs=38.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~~  347 (454)
                      +++|+++|+|+ ||+|++++..|.+.|++|.+. .|+.++++.+..+++
T Consensus         3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~~~~~~~~~~   51 (253)
T PRK08642          3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDAAEALADELG   51 (253)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhC
Confidence            45789999995 699999999999999987765 567777777777664

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=94.25  E-value=0.12  Score=51.36  Aligned_cols=38  Identities=29%  Similarity=0.257  Sum_probs=33.0

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK  340 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~  340 (454)
                      -++|.|||||-||+.||+.++..|+.|++++++++.++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~   40 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALE   40 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHH
Confidence            36899999999999999999996689999999966543

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=94.24  E-value=0.095  Score=56.77  Aligned_cols=68  Identities=19%  Similarity=0.116  Sum_probs=52.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~divInat~  372 (454)
                      .+++|+|.|..|+.++..|.+.|.+++++++++++.+++.+ .+...     .+.+.+++..++++|.++-+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~  490 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLLTIP  490 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence            57899999999999999999999999999999999888864 44332     1222233335678998887776

>PRK05086 malate dehydrogenase; Provisional

Probab=94.20  E-value=0.085  Score=52.82  Aligned_cols=72  Identities=25%  Similarity=0.279  Sum_probs=45.9

Q ss_pred             ceEEEEcc-chhHHHHHHHHHH-CCC--eEEEEeCCHHHHHHHHHHhcC-C---ccc---cccccccCCCCccEEEECCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKS-RGA--RVVIFDIDFERAKSLASDVMG-A---ARP---FEDILNFQPEKGAILANATP  372 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~-~G~--~v~i~nRt~~~a~~la~~~~~-~---~~~---~~~l~~~~~~~~divInat~  372 (454)
                      ++++|+|| |++|+++++.|.. .+.  ++++++|+. .++..+-++.. .   .+.   -+++.+ .+.++|+||+|..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~-~~~g~alDl~~~~~~~~i~~~~~~d~~~-~l~~~DiVIitaG   78 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDPTP-ALEGADVVLISAG   78 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCC-CCcceehhhhcCCCCceEEEeCCCCHHH-HcCCCCEEEEcCC
Confidence            37899999 9999999999865 443  789999874 34332222221 1   111   123323 4577999999986


Q ss_pred             CCCCC
Q 012866          373 LGMHP  377 (454)
Q Consensus       373 ~g~~p  377 (454)
                      ....|
T Consensus        79 ~~~~~   83 (312)
T PRK05086         79 VARKP   83 (312)
T ss_pred             CCCCC
Confidence            64444

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.20  E-value=0.21  Score=49.40  Aligned_cols=68  Identities=19%  Similarity=0.121  Sum_probs=50.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~  372 (454)
                      .+.+++|.|+|++|.+++..++.+|++|+++.++.++.+.+. .++... ....+..  ....+|++++++.
T Consensus       155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~-~~g~~~~~~~~~~~--~~~~~d~vid~~g  223 (319)
T cd08242         155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR-RLGVETVLPDEAES--EGGGFDVVVEATG  223 (319)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH-HcCCcEEeCccccc--cCCCCCEEEECCC
Confidence            468899999999999999999999999988988888865554 476543 1222211  2245899999874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK05650 short chain dehydrogenase; Provisional

Probab=94.18  E-value=0.11  Score=50.22  Aligned_cols=43  Identities=26%  Similarity=0.394  Sum_probs=37.6

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++|+|+ ||+|++++..|.+.|.+|+++.|+.++++++..++
T Consensus         1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l   44 (270)
T PRK05650          1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLL   44 (270)
T ss_pred             CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            36899996 79999999999999999999999999888776654

>PRK07832 short chain dehydrogenase; Provisional

Probab=94.17  E-value=0.12  Score=50.20  Aligned_cols=43  Identities=28%  Similarity=0.438  Sum_probs=37.2

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++++|+|+ ||.|++++..|++.|++|++++|+.++.+++.+++
T Consensus         1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~   44 (272)
T PRK07832          1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADA   44 (272)
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            46899996 69999999999999999999999988877776554

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=94.17  E-value=0.19  Score=47.85  Aligned_cols=95  Identities=20%  Similarity=0.140  Sum_probs=59.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccc--c----ccCCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDI--L----NFQPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l--~----~~~~~~~divInat~~  373 (454)
                      ..+++++|.|+|++|++++..++..|.+|+++.++.++.+.+ +.++... ++..+.  .    ......+|+++++++.
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~  211 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELA-KELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGG  211 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHH-HHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCC
Confidence            357899999999999999998889999999999998876655 4454321 111110  0    0012468999998763


Q ss_pred             CCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          374 GMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       374 g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      ...     ..-..+.+.+...++++.-.
T Consensus       212 ~~~-----~~~~~~~l~~~G~~v~~~~~  234 (271)
T cd05188         212 PET-----LAQALRLLRPGGRIVVVGGT  234 (271)
T ss_pred             HHH-----HHHHHHhcccCCEEEEEccC
Confidence            110     00112345566667766543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06924 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.089  Score=50.13  Aligned_cols=43  Identities=23%  Similarity=0.370  Sum_probs=35.5

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDV  346 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~  346 (454)
                      |+++|+|+ ||.|++++..|.+.|++|+++.|+. ++.+++.+..
T Consensus         2 k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~   46 (251)
T PRK06924          2 RYVIITGTSQGLGEAIANQLLEKGTHVISISRTENKELTKLAEQY   46 (251)
T ss_pred             cEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchHHHHHHHhcc
Confidence            57999995 7999999999999999999999987 5555555443

>PRK12746 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.13  Score=49.10  Aligned_cols=46  Identities=30%  Similarity=0.526  Sum_probs=38.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVI-FDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i-~nRt~~~a~~la~~~  346 (454)
                      +++++++|.|+ |++|++++..|.+.|++|.+ ..|+.++.+++.+.+
T Consensus         4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~   51 (254)
T PRK12746          4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREI   51 (254)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            45789999995 79999999999999998766 589888777766554

>PRK07775 short chain dehydrogenase; Provisional

Probab=94.13  E-value=0.15  Score=49.67  Aligned_cols=46  Identities=26%  Similarity=0.322  Sum_probs=39.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+.|.++|.|+ |+.|++++..|.+.|++|++..|+.++.+++..++
T Consensus         8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~   54 (274)
T PRK07775          8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKI   54 (274)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            45689999996 79999999999999999999999988877765544

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.13  E-value=0.17  Score=51.52  Aligned_cols=69  Identities=30%  Similarity=0.297  Sum_probs=49.0

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHH-hcCCcccc--c-c----cccc-CCCCccEEEECCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASD-VMGAARPF--E-D----ILNF-QPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~-~~~~~~~~--~-~----l~~~-~~~~~divInat~  372 (454)
                      +.+|+|+|+|.+|..++..++..|+ +|++++++++|.+ +|++ ++...+..  + +    ..+. .-..+|++|.|+.
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~-~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLE-LAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH-HHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            3389999999999999888889999 8999999999865 5555 54432111  1 1    1010 1135899999997

>COG3268 Uncharacterized conserved protein [Function unknown]

Probab=94.11  E-value=0.081  Score=52.55  Aligned_cols=116  Identities=16%  Similarity=0.072  Sum_probs=84.4

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccccc-----ccccCCCCccEEEECCCCCCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFED-----ILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~-----l~~~~~~~~divInat~~g~~p  377 (454)
                      ...+|.|| |-+|+-++.+|+..|.+-.+..|+..|...+...+|.+...|.-     +.+ .....++|+||...=.. 
T Consensus         7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~kl~~l~~~LG~~~~~~p~~~p~~~~~-~~~~~~VVlncvGPyt~-   84 (382)
T COG3268           7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSAKLDALRASLGPEAAVFPLGVPAALEA-MASRTQVVLNCVGPYTR-   84 (382)
T ss_pred             eeEEEEccccchhHHHHHHHHHcCCchhhccCCHHHHHHHHHhcCccccccCCCCHHHHHH-HHhcceEEEeccccccc-
Confidence            46899997 78899999999999998899999999999999999986644432     222 35678999999853211 


Q ss_pred             CCCCCCCChhcccCCcEEEEEecCCCC-----CHHHHHHHHCCCceeccHH
Q 012866          378 NTDRVPVSEETLRDYQLVFDAVYTPRK-----TRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~y~P~~-----T~ll~~A~~~G~~~~~Gl~  423 (454)
                        ...|+-..++..+.--+|+.=...-     ...-++|++.|+.+++|.+
T Consensus        85 --~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cG  133 (382)
T COG3268          85 --YGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCG  133 (382)
T ss_pred             --cccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCC
Confidence              2345666777777777888643221     1113578888999888754

>PRK05855 short chain dehydrogenase; Validated

Probab=94.10  E-value=0.12  Score=55.61  Aligned_cols=76  Identities=32%  Similarity=0.466  Sum_probs=54.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QP  361 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  361 (454)
                      ...++++++|+|+ ||.|++++..|++.|++|.+++|+.++++++++.+.   ...    +++.+   +.++      ..
T Consensus       311 ~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~  390 (582)
T PRK05855        311 GPFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAEWVRAEH  390 (582)
T ss_pred             ccCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            3466789999996 799999999999999999999999998888876552   111    12222   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus       391 g~id~lv~~Ag~~  403 (582)
T PRK05855        391 GVPDIVVNNAGIG  403 (582)
T ss_pred             CCCcEEEECCccC
Confidence            3579999988654

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=94.09  E-value=0.13  Score=57.39  Aligned_cols=39  Identities=26%  Similarity=0.394  Sum_probs=35.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS  341 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~  341 (454)
                      -++|.|||+|-||..|+..++..|.+|++++++.+..++
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~  351 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDL  351 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHH
Confidence            368999999999999999999999999999999887654

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional

Probab=94.07  E-value=0.096  Score=52.12  Aligned_cols=35  Identities=29%  Similarity=0.489  Sum_probs=31.6

Q ss_pred             CCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeC
Q 012866          300 PLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDI  334 (454)
Q Consensus       300 ~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nR  334 (454)
                      .++||.++|.|+|   |+|++++..|++.|++|++..|
T Consensus         5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~   42 (299)
T PRK06300          5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTW   42 (299)
T ss_pred             CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEec
Confidence            4689999999996   9999999999999999998654

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.06  E-value=0.16  Score=51.25  Aligned_cols=67  Identities=16%  Similarity=0.074  Sum_probs=47.0

Q ss_pred             CCceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      .+.+|+|+|+|++|..++..++. .|. +|++++++++|.+. ++..+... ..+++.+ . ..+|++|+++.
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~-a~~~~~~~-~~~~~~~-~-~g~d~viD~~G  231 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDL-FSFADETY-LIDDIPE-D-LAVDHAFECVG  231 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHH-HhhcCcee-ehhhhhh-c-cCCcEEEECCC
Confidence            47899999999999998887775 565 89999999888654 34443321 1222222 1 24899999996

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=94.03  E-value=0.1  Score=51.96  Aligned_cols=110  Identities=22%  Similarity=0.244  Sum_probs=68.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc------c--cc-ccccccCCCCccEEEECCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA------R--PF-EDILNFQPEKGAILANATP  372 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~------~--~~-~~l~~~~~~~~divInat~  372 (454)
                      ++|.|||||+.|.+.++.|...+.  ++.++++..++++-.+.++....      .  .- .+.+  ..+++|+||-+..
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~--~~~~aDiVvitAG   78 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYE--DLKGADIVVITAG   78 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChh--hhcCCCEEEEeCC
Confidence            378999999999999999987775  89999999888777766664311      0  00 1122  3577999988775


Q ss_pred             CCCCCCCCCCCC-Ch------h----cc--cCCcEEEEEecCCCCCHHHHHHHHCCC
Q 012866          373 LGMHPNTDRVPV-SE------E----TL--RDYQLVFDAVYTPRKTRLLKDAEAAGA  416 (454)
Q Consensus       373 ~g~~p~~~~~~i-~~------~----~l--~~~~~v~D~~y~P~~T~ll~~A~~~G~  416 (454)
                      +.-.|.-+...+ ..      +    ..  .++ ..+=++-||.++--.-..+-.|.
T Consensus        79 ~prKpGmtR~DLl~~Na~I~~~i~~~i~~~~~d-~ivlVvtNPvD~~ty~~~k~sg~  134 (313)
T COG0039          79 VPRKPGMTRLDLLEKNAKIVKDIAKAIAKYAPD-AIVLVVTNPVDILTYIAMKFSGF  134 (313)
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCC-eEEEEecCcHHHHHHHHHHhcCC
Confidence            544454221111 10      0    00  122 34456668987655555555554

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=94.02  E-value=0.07  Score=49.78  Aligned_cols=37  Identities=24%  Similarity=0.347  Sum_probs=33.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE  337 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~  337 (454)
                      +++++|+|+|+||.|..++..|+..|+ +|++++.+.-
T Consensus        17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~v   54 (198)
T cd01485          17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLV   54 (198)
T ss_pred             HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcC
Confidence            457899999999999999999999999 8999987643

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK06398 aldose dehydrogenase; Validated

Probab=94.01  E-value=0.08  Score=51.01  Aligned_cols=39  Identities=28%  Similarity=0.487  Sum_probs=34.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ++++|+++|+|+ ||.|++++..|.+.|++|++.+|+.++
T Consensus         3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~   42 (258)
T PRK06398          3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS   42 (258)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc
Confidence            367899999996 699999999999999999999998654

>PLN02650 dihydroflavonol-4-reductase

Probab=94.01  E-value=0.1  Score=52.71  Aligned_cols=71  Identities=14%  Similarity=0.017  Sum_probs=48.3

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---C--C--c--ccccc---ccccCCCCccEEE
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---G--A--A--RPFED---ILNFQPEKGAILA  368 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~--~--~--~~~~~---l~~~~~~~~divI  368 (454)
                      +.+++||.|+ |.+|+.++..|.+.|.+|+++.|+.+++..+.....   .  .  .  .++.+   +.+ .+.++|.||
T Consensus         4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~-~~~~~d~Vi   82 (351)
T PLN02650          4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDD-AIRGCTGVF   82 (351)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHH-HHhCCCEEE
Confidence            4678999995 899999999999999999999998776655543221   0  0  1  11211   222 245679999


Q ss_pred             ECCCC
Q 012866          369 NATPL  373 (454)
Q Consensus       369 nat~~  373 (454)
                      ++...
T Consensus        83 H~A~~   87 (351)
T PLN02650         83 HVATP   87 (351)
T ss_pred             EeCCC
Confidence            87753

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=94.00  E-value=0.78  Score=43.72  Aligned_cols=98  Identities=21%  Similarity=0.306  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHhCCcEEEEeccCcch-------HHHHhhh-cCCCCeEEEEeeccCCC----CCCHhHHHHHHHHHHhc
Q 012866           20 HKRLEALHLAEDLGADYVDFELKVASN-------ILGKQYS-SHQSGTRFIVSCNLDCE----TPSEEDLGYLVSRMQAT   87 (454)
Q Consensus        20 ~~~~~ll~~~~~~~~~yvDvE~~~~~~-------~~~~l~~-~~~~~~kiI~S~H~f~~----tp~~~~l~~~~~~~~~~   87 (454)
                      +....-++.+++.|++.||+.+.....       ...++.. .++.+.++|+--|....    .-+.+++....+.+.+.
T Consensus        76 ~~~~~~v~~a~~~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~  155 (235)
T cd00958          76 KVLVASVEDAVRLGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAEL  155 (235)
T ss_pred             hhhhcCHHHHHHCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHH
Confidence            555566889999999999999875431       2333332 34578999995543100    01234556557778889


Q ss_pred             CCCEEEEecccCCHhHHHHHHHHhccCCCCEEEE
Q 012866           88 GADIIKLVFSVNDITEIARIFQLLSHCQVPIIAY  121 (454)
Q Consensus        88 gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~  121 (454)
                      |||++|+-.+ .   |...+-++.+..+.|++++
T Consensus       156 GaD~Ik~~~~-~---~~~~~~~i~~~~~~pvv~~  185 (235)
T cd00958         156 GADIVKTKYT-G---DAESFKEVVEGCPVPVVIA  185 (235)
T ss_pred             CCCEEEecCC-C---CHHHHHHHHhcCCCCEEEe
Confidence            9999999532 2   4444555555557787555

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]

Probab=94.00  E-value=0.25  Score=47.69  Aligned_cols=186  Identities=17%  Similarity=0.206  Sum_probs=106.3

Q ss_pred             EEEecCCCCcccCHHHH-HHHHHhcCCCceEEecc--c--CCHHHHHHhc-CCCCCCEEEeccCchHHHHh-hh-hhcCH
Q 012866          176 FGLISKPVGHSKGPILH-NPTFRHVNYNGIYVPMF--V--DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMK-FC-DEVHP  247 (454)
Q Consensus       176 ~~liG~pv~hS~SP~~h-n~~f~~~gl~~~y~~~~--~--~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~-~~-d~~~~  247 (454)
                      -+++|.+-+ |.+-.+. +++.++.|+...-..+.  .  +++.+.+..+ .++...|.-|-.|.++.+-+ ++ .-+++
T Consensus        43 ~~lvg~~pa-s~~Ya~~k~kac~~vGi~s~~~~l~~~~~~~~l~~~i~~~N~d~sV~GilV~~pv~~h~~eq~i~n~Vs~  121 (309)
T KOG0089|consen   43 GFLVGEDPA-SQMYATNKTKACEEVGIKSFQYELPESESEDELESAIAEANNDPSVHGILVQLPVPQHIQEQYILNAVSP  121 (309)
T ss_pred             EEEeCCCcc-hHHHHHHHHHHHHHhhhcccccccccccCHHHHHHHHHHhcCCCceeeEEEEeeccccccHHHHHhhcCc
Confidence            455664432 3333322 67888999654322222  2  3566666555 68889999999999877752 22 11111


Q ss_pred             hHhHccceeEEEEeCCCCeEEEeec-------cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHH
Q 012866          248 LAQAIAAVNTIIRRPSDGKLIGYNT-------DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALA  319 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~G~NT-------D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~  319 (454)
                      . +..- -|-.++-   |++.=+++       --.|+++-|++ +            +..+.||+++|+|=. -.|+.++
T Consensus       122 e-KDVD-gfh~~Ni---grl~ld~~~~~~lPcTP~gv~eiL~r-~------------gI~~~GKn~VVigRS~iVg~P~A  183 (309)
T KOG0089|consen  122 E-KDVD-GFHPLNI---GRLALDGREPLFLPCTPLGVVEILER-T------------GIETYGKNAVVIGRSKIVGMPLA  183 (309)
T ss_pred             c-cccc-cccccch---hhhccccccccccCCchHHHHHHHHH-h------------CCeecCceEEEEcccccccchHH
Confidence            1 1100 1111111   33332333       25677777654 2            467889999999955 7799999


Q ss_pred             HHHHHCCC--------eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccC
Q 012866          320 FGAKSRGA--------RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRD  391 (454)
Q Consensus       320 ~~L~~~G~--------~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~  391 (454)
                      .-|+..|+        .|+++-|-..+               +.++. +...+|++|.+...   |    ..+..+++.+
T Consensus       184 ~LL~~dG~~~~~~~datVti~hr~t~~---------------~~lk~-ht~~adivi~a~g~---p----~li~~d~Ik~  240 (309)
T KOG0089|consen  184 LLLHNDGAHVYSVDDATVTIFHRYTSK---------------PQLKH-HTRDADIVISAVGI---P----NLITSDMIKP  240 (309)
T ss_pred             HHHhhcCCcccccCcceEEEEEcCCCc---------------hhHHH-HHHhcceeehhcCC---C----cccccceeec
Confidence            99988863        56777664322               11122 33457888865532   2    2456677777


Q ss_pred             CcEEEEEecCCC
Q 012866          392 YQLVFDAVYTPR  403 (454)
Q Consensus       392 ~~~v~D~~y~P~  403 (454)
                      +..+.|+-.++.
T Consensus       241 Ga~vidvgin~v  252 (309)
T KOG0089|consen  241 GAAVIDVGINRV  252 (309)
T ss_pred             CceeEecCCCcc
Confidence            777777766544

>PRK08226 short chain dehydrogenase; Provisional

Probab=93.97  E-value=0.13  Score=49.38  Aligned_cols=37  Identities=32%  Similarity=0.558  Sum_probs=33.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      +++++++|+|+ ||.|++++..|.+.|++|++++|+.+
T Consensus         4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~   41 (263)
T PRK08226          4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPE   41 (263)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHH
Confidence            56789999995 69999999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	454
2gpt_A	523	Crystal Structure Of Arabidopsis Dehydroquinate Deh		1e-119
2o7q_A	523	Crystal Structure Of The A. Thaliana Dhq-Dehydroshi		1e-118
1nvt_A	287	Crystal Structure Of Shikimate Dehydrogenase (Aroe		1e-33
3don_A	277	Crystal Structure Of Shikimate Dehydrogenase From S		5e-25
2egg_A	297	Crystal Structure Of Shikimate 5-Dehydrogenase (Aro		9e-25
3toz_A	315	2.2 Angstrom Crystal Structure Of Shikimate 5-Dehyd		1e-24
2hk7_A	269	Crystal Structure Of Shikimate Dehydrogenase From A		2e-23
2hk9_A	275	Crystal Structure Of Shikimate Dehydrogenase From A		2e-23
3t4e_A	312	1.95 Angstrom Crystal Structure Of Shikimate 5-Dehy		9e-21
2nlo_A	302	Crystal Structure Of The Quinate Dehydrogenase From		7e-18
3jyo_A	283	Quinate Dehydrogenase From Corynebacterium Glutamic		7e-18
1wxd_A	263	Crystal Structure Of Shikimate 5-dehydrogenase (aro		8e-18
1npy_A	271	Structure Of Shikimate 5-Dehydrogenase-Like Protein		2e-17
1vi2_A	300	Crystal Structure Of Shikimate-5-Dehydrogenase With		3e-17
3fbt_A	282	Crystal Structure Of A Chorismate MutaseSHIKIMATE 5		3e-17
1npd_A	288	X-Ray Structure Of Shikimate Dehydrogenase Complexe		3e-17
3phg_A	269	Crystal Structure Of The Shikimate 5-Dehydrogenase		1e-13
4foo_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		1e-13
4fr5_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-13
4fpx_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		2e-13
4fos_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-13
4fq8_A	271	Crystal Structure Of Shikimate Dehydrogenase (Aroe)		3e-13
3tum_B	269	2.15 Angstrom Resolution Crystal Structure Of A Shi		4e-13
4fsh_A	271	Crystal Structure Of Shikimate Dehydrogenase (aroe)		6e-12
3pgj_A	302	2.49 Angstrom Resolution Crystal Structure Of Shiki		6e-09
3o8q_A	281	1.45 Angstrom Resolution Crystal Structure Of Shiki		6e-09
3o8q_B	275	1.45 Angstrom Resolution Crystal Structure Of Shiki		6e-09
3u62_A	253	Crystal Structure Of Shikimate Dehydrogenase From T		2e-08
1nyt_A	271	Shikimate Dehydrogenase Aroe Complexed With Nadp+ L		4e-08
1qfe_A	252	The Structure Of Type I 3-Dehydroquinate Dehydratas		1e-06
3pwz_A	272	Crystal Structure Of An Ael1 Enzyme From Pseudomona		3e-06
3m7w_A	255	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		3e-05
3o1n_A	276	1.03 Angstrom Crystal Structure Of Q236a Mutant Typ		3e-05
3l2i_A	276	1.85 Angstrom Crystal Structure Of The 3-Dehydroqui		4e-05
4guf_A	276	1.5 Angstrom Crystal Structure Of The Salmonella En		4e-05
3js3_A	258	Crystal Structure Of Type I 3-Dehydroquinate Dehydr		5e-05
3nnt_A	276	Crystal Structure Of K170m Mutant Of Type I 3-Dehyd		2e-04

>pdb|2GPT|A Chain A, Crystal Structure Of Arabidopsis Dehydroquinate Dehydratase- Shikimate Dehydrogenase In Complex With Tartrate And Shikimate Length = 523

Iteration: 1
 Score =  426 bits (1094), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 221/446 (49%), Positives = 291/446 (65%), Gaps = 2/446 (0%)
Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
           RPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + IVS +
Sbjct: 66  RPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSH 125
Query: 67  LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
               TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   +GER
Sbjct: 126 NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGER 185
Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           GL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I KPV 
Sbjct: 186 GLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPVS 245
Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++ CDE
Sbjct: 246 HSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDE 305
Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           V PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +   S  SPLA +
Sbjct: 306 VDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASK 365
Query: 305 MFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
             V+              K +GA+VVI +  +ERA  LA  + G A    D+ N+ PE G
Sbjct: 366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDG 425
Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
            +LAN T +GM PN +  P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VSG EM
Sbjct: 426 MVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEM 485
Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIV 450
           F+RQA  QF +FTG  APKE   +I+
Sbjct: 486 FVRQAYEQFEIFTGLPAPKELYWQIM 511

>pdb|2O7Q|A Chain A, Crystal Structure Of The A. Thaliana Dhq-Dehydroshikimate-Sdh- Shikimate-Nadp(H) Length = 523

Iteration: 1
 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 220/446 (49%), Positives = 290/446 (65%), Gaps = 2/446 (0%)
Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
           RPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + IVS +
Sbjct: 66  RPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSH 125
Query: 67  LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
               TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   +GER
Sbjct: 126 NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGER 185
Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           GL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I KPV 
Sbjct: 186 GLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPVS 245
Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++ CDE
Sbjct: 246 HSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQXCDE 305
Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           V PLA++I AVNTI+RR SDGKL+GYNTD   SI+AIED ++  G  +   S  SPLA +
Sbjct: 306 VDPLAKSIGAVNTILRRKSDGKLLGYNTDXIGSISAIEDGLRSSGDPSSVPSSSSPLASK 365
Query: 305 MFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
             V+              K +GA+VVI +  +ERA  LA  + G A    D+ N+ PE G
Sbjct: 366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDG 425
Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
            +LAN T +GM PN +  P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VSG EM
Sbjct: 426 MVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEM 485
Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIV 450
           F+RQA  QF +FTG  APKE   +I+
Sbjct: 486 FVRQAYEQFEIFTGLPAPKELYWQIM 511

>pdb|1NVT|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe Or Mj1084) In Complex With Nadp+ Length = 287

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 145/296 (48%), Gaps = 27/296 (9%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   V  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           GF+V  P+K  +MK+ DE+   AQ I AVNTI  +  DGK IGYNTD   +  A+E+ I 
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTI--KIEDGKAIGYNTDGIGARMALEEEIG 124
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
               KN              ++               ++   ++I +   E+A++LA ++
Sbjct: 125 RVKDKN--------------IVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEI 170
Query: 347 -------MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDYQLVFDA 398
                   G    F   L+   +   I+ NATP+GM+PN D  P V  E LR+  +V D 
Sbjct: 171 AEKLNKKFGEEVKFSG-LDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229
Query: 399 VYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           +Y P +T LLK+A+   A  ++G+ M + Q    F ++TG E   E M+  ++ K 
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDKI 285

>pdb|3DON|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Staphylococcus Epidermidis Length = 277

Iteration: 1
 Score =  112 bits (279), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 138/290 (47%), Gaps = 38/290 (13%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPMF-VDDLKKFFSTYSSPDFAGFSV 230
           F +I  P+ HS  P++H+  F+ +N    Y  I VP+    D+KK  S  S     GF+V
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKS---IDGFNV 59
Query: 231 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK--ER 288
             P+KE ++ + D+++  A+++ AVNT++ +  DGK IGYNTD    +  ++   +  E 
Sbjct: 60  TIPHKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQIYEGIED 117
Query: 289 GY----KNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLAS 344
            Y      G AS G  +A  ++ +              +     + I  I+   A+S   
Sbjct: 118 AYILILGAGGASKG--IANELYKI-VRPTLTVANRTMSRFNNWSLNINKINLSHAES--- 171
Query: 345 DVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK 404
                            ++  I+ N TP GM+ NTD V +S   L  + LV D VY P K
Sbjct: 172 ---------------HLDEFDIIINTTPAGMNGNTDSV-ISLNRLASHTLVSDIVYNPYK 215
Query: 405 TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           T +L +AE  G  I +G++MF+ Q    F ++T  E   + M+ IV+ K 
Sbjct: 216 TPILIEAEQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQKL 265

>pdb|2EGG|A Chain A, Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Geobacillus Kaustophilus Length = 297

Iteration: 1
 Score =  111 bits (277), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 134/282 (47%), Gaps = 17/282 (6%)
Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 231
           KV+GLI  PV HS  P++HN  F  +     Y    V+   +    +   +   AG +V 
Sbjct: 24  KVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVT 83
Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K AV+ F DEV   A+ I AVNTII   +DG+L+GYNTD    + A+E+ +      
Sbjct: 84  IPHKLAVIPFLDEVDEHARRIGAVNTIIN--NDGRLVGYNTDGLGYVQALEEEM------ 135
Query: 292 NGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGAAR 351
           N T         R+ V+               +   R+ + +   E+A+ L  +      
Sbjct: 136 NITLD-----GKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRS 190
Query: 352 PFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLK 409
            +  +   +       I+ N T +GMHP  +  P+S E LR   +V D +Y P +T+ LK
Sbjct: 191 AYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPLETKWLK 250
Query: 410 DAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 451
           +A+A GA + +GV M + Q    F  +TG+      M+++V+
Sbjct: 251 EAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVI 292

>pdb|3TOZ|A Chain A, 2.2 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase From Listeria Monocytogenes In Complex With Nad. Length = 315

Iteration: 1
 Score =  110 bits (276), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 138/302 (45%), Gaps = 32/302 (10%)
Query: 166 VEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSP 223
            E I   T++ GLI+ P+ HS  P +HN  F  +  + +Y+   V D  LK     + + 
Sbjct: 30  TERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAM 89
Query: 224 DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIED 283
           +  G++V  P K  + K+ D++ P A+ + AVNT++    DG L G+ TD    + A+++
Sbjct: 90  NLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVN--DDGVLTGHITDGTGYMRALKE 147
Query: 284 AIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGAR-VVIFDI--DF---- 336
           A             G  + G+   +                 G + + IF+   DF    
Sbjct: 148 A-------------GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANA 194
Query: 337 ----ERAKSLASDVMGAARPFEDILNFQPE--KGAILANATPLGMHP-NTDRVPVSEETL 389
               E+  S  +D        ED    + E  +  I  NAT +GM P   + +  S + L
Sbjct: 195 EKTVEKINS-KTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADML 253
Query: 390 RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
           R   +V D VY P KTRLL+ AE  G   ++G+ M L Q    F ++T KE P ++++EI
Sbjct: 254 RPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEI 313
Query: 450 VL 451
           + 
Sbjct: 314 LF 315

>pdb|2HK7|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Mercury At 2.5 Angstrom Resolution Length = 269

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 31/280 (11%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + +    
Sbjct: 2   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 61
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P+KE ++   D V   A+ I AVNT+  +  +GK  GYNTD    + +++  I 
Sbjct: 62  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 119
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
           E   K+     G+  A R  +                  GA+V +++   E+A  LA   
Sbjct: 120 EVKEKS-ILVLGAGGASRAVIYALV------------KEGAKVFLWNRTKEKAIKLAQKF 166
Query: 347 MGAARPFEDILNFQPE----KGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
                P E ++N  PE    K  ++ N T +G+  + D    + + ++   +V D +Y  
Sbjct: 167 -----PLE-VVN-SPEEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY-- 216
Query: 403 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAP 442
           ++T+LLK A+  GA ++ G+ M L Q I  F ++ G E P
Sbjct: 217 KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 256

>pdb|2HK9|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Aquifex Aeolicus In Complex With Shikimate And Nadp+ At 2.2 Angstrom Resolution Length = 275

Iteration: 1
 Score =  106 bits (265), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 136/280 (48%), Gaps = 31/280 (11%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + +    
Sbjct: 8   INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVK 67
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P+KE ++   D V   A+ I AVNT+  +  +GK  GYNTD    + +++  I 
Sbjct: 68  GINVTVPFKEEIIPLLDYVEDTAKEIGAVNTV--KFENGKAYGYNTDWIGFLKSLKSLIP 125
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
           E   K+     G+  A R  +                  GA+V +++   E+A  LA   
Sbjct: 126 EVKEKS-ILVLGAGGASRAVIYALV------------KEGAKVFLWNRTKEKAIKLAQKF 172
Query: 347 MGAARPFEDILNFQPE----KGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
                P E ++N  PE    K  ++ N T +G+  + D    + + ++   +V D +Y  
Sbjct: 173 -----PLE-VVN-SPEEVIDKVQVIVNTTSVGLK-DEDPEIFNYDLIKKDHVVVDIIY-- 222
Query: 403 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAP 442
           ++T+LLK A+  GA ++ G+ M L Q I  F ++ G E P
Sbjct: 223 KETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVP 262

>pdb|3T4E|A Chain A, 1.95 Angstrom Crystal Structure Of Shikimate 5-Dehydrogenase (Aroe) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium In Complex With Nad Length = 312

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 82/302 (27%), Positives = 130/302 (43%), Gaps = 40/302 (13%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSP----- 223
           + A  ++ GL++ P+ HS  P + N           Y+   VD+     +T++S      
Sbjct: 27  VTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN-----TTFASAIEGLK 81
Query: 224 --DFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 281
                G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I AI
Sbjct: 82  ALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI 139
Query: 282 EDAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFE 337
               KE G+          + G+  VL                 G + +      D  FE
Sbjct: 140 ----KESGFD---------MRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFE 186
Query: 338 RAKSLA------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETL 389
           +A + A      +D +       D   F     +  IL N T +GM P  +   + + +L
Sbjct: 187 KAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIGDVSL 246
Query: 390 -RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 448
            R   LV + VY P  T+LL+ A+ AG   + G  M L Q   QF L+TGK  P +++++
Sbjct: 247 LRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQ 306
Query: 449 IV 450
           ++
Sbjct: 307 VM 308

>pdb|2NLO|A Chain A, Crystal Structure Of The Quinate Dehydrogenase From Corynebacterium Glutamicum Length = 302

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 122/302 (40%), Gaps = 43/302 (14%)
Query: 172 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 222
           D+ + GLI + +  S+ P +H            +R ++  G        DLK        
Sbjct: 22  DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 79
Query: 223 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 282
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 80  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 138
Query: 283 DAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSL 342
           + +         A   S +      +              K +     + D+D  RA++L
Sbjct: 139 EGLPN-------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQ-----VADLDTSRAQAL 186
Query: 343 ASDVMGA----------ARPFEDILNFQPEKGAILANATPLGM--HPNTDRVPVSEETLR 390
           A  +  A          AR  ED++      G +  NATP+GM  HP T         L 
Sbjct: 187 ADVINNAVGREAVVGVDARGIEDVI--AAADGVV--NATPMGMPAHPGT---AFDVSCLT 239
Query: 391 DYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
               V D VY P +T LLK A A G   + G  M + QA+  F LFTG E     MRE  
Sbjct: 240 KDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETF 299
Query: 451 LA 452
           L+
Sbjct: 300 LS 301

>pdb|3JYO|A Chain A, Quinate Dehydrogenase From Corynebacterium Glutamicum In Complex With Nad Length = 283

Iteration: 1
 Score = 88.6 bits (218), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 84/302 (27%), Positives = 122/302 (40%), Gaps = 43/302 (14%)
Query: 172 DTKVFGLISKPVGHSKGPILHNP---------TFRHVNYNGIYVPMFVDDLKKFFSTYSS 222
           D+ + GLI + +  S+ P +H            +R ++  G        DLK        
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASG--QDLKTLLDAALY 60
Query: 223 PDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 282
             F G ++  PYK+AV+   DEV   A  + AVNT++   + G   G+NTD       +E
Sbjct: 61  LGFNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDAT-GHTTGHNTDVSGFGRGME 119
Query: 283 DAIKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSL 342
           + +         A   S +      +              K +     + D+D  RA++L
Sbjct: 120 EGLPN-------AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQ-----VADLDTSRAQAL 167
Query: 343 ASDVMGA----------ARPFEDILNFQPEKGAILANATPLGM--HPNTDRVPVSEETLR 390
           A  +  A          AR  ED++      G +  NATP+GM  HP T         L 
Sbjct: 168 ADVINNAVGREAVVGVDARGIEDVI--AAADGVV--NATPMGMPAHPGT---AFDVSCLT 220
Query: 391 DYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
               V D VY P +T LLK A A G   + G  M + QA+  F LFTG E     MRE  
Sbjct: 221 KDHWVGDVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETF 280
Query: 451 LA 452
           L+
Sbjct: 281 LS 282

>pdb|1WXD|A Chain A, Crystal Structure Of Shikimate 5-dehydrogenase (aroe) From Thermus Thermophilus Hb8 Length = 263

Iteration: 1
 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 117/272 (43%), Gaps = 39/272 (14%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY---------VPMFVDDLKKFFSTYSSPDFA 226
           F ++  PV HS  P +H      +   G Y         +P  + ++++ F         
Sbjct: 4   FAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRAFR-------- 55
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G ++  P KEA +   D V P AQ I AVNT+++   +G+L G+NTD    + A++    
Sbjct: 56  GVNLTLPLKEAALAHLDWVSPEAQRIGAVNTVLQ--VEGRLFGFNTDAPGFLEALKAG-- 111
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV 346
                      G PL G   VL              ++ G  V +++   +RA +LA + 
Sbjct: 112 -----------GIPLKGPALVLGAGGAGRAVAFALREA-GLEVWVWNRTPQRALALAEEF 159
Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR 406
              A P E     +  +  +L NAT +G+  +    P+  E   +     D VY P  TR
Sbjct: 160 GLRAVPLE-----KAREARLLVNATRVGLE-DPSASPLPAELFPEEGAAVDLVYRPLWTR 213
Query: 407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG 438
            L++A+A G  + +G+ M   Q    F L+TG
Sbjct: 214 FLREAKAKGLKVQTGLPMLAWQGALAFRLWTG 245

>pdb|1NPY|A Chain A, Structure Of Shikimate 5-Dehydrogenase-Like Protein Hi0607 Length = 271

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/288 (26%), Positives = 125/288 (43%), Gaps = 35/288 (12%)
Query: 169 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 227
           IN DT++   L  +P     G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRPSNF--GTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59
Query: 228 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 287
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNTD  A +  I     E
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVN--DNGFLRAYNTDYIAIVKLI-----E 112
Query: 288 RGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDV- 346
           + + N  A      +G M                  ++       +  FE+ K  A +V 
Sbjct: 113 KYHLNKNAKVIVHGSGGM------------------AKAVVAAFKNSGFEKLKIYARNVK 154
Query: 347 ----MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS--EETLRDYQLVFDAVY 400
               + A   +  I + + ++  IL N T +GM    + + ++  +  + +  + FD V 
Sbjct: 155 TGQYLAALYGYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVA 214
Query: 401 TPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 448
            P +T  ++ A+A G   +SG  + + QA+ QF L+T +    E + E
Sbjct: 215 MPVETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAE 262

>pdb|1VI2|A Chain A, Crystal Structure Of Shikimate-5-Dehydrogenase With Nad Length = 300

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 30/296 (10%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 226
           + A  ++ GL + P+ HS  P   N           Y    VD+           +    
Sbjct: 5   VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 64
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I AI    K
Sbjct: 65  GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI----K 118
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFERAKSL 342
           E G+          + G+  VL                 G + +      D  F++A + 
Sbjct: 119 ESGFD---------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 169
Query: 343 A------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSE-ETLRDYQ 393
           A      +D +       D   F     +  IL N T +G  P  +   V++   L    
Sbjct: 170 AQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGL 229
Query: 394 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
           LV + VY P  T+LL+ A+ AG   + G    L Q   QF L+TGK+ P E+++++
Sbjct: 230 LVTECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 285

>pdb|3FBT|A Chain A, Crystal Structure Of A Chorismate MutaseSHIKIMATE 5- Dehydrogenase Fusion Protein From Clostridium Acetobutylicum Length = 282

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 115/267 (43%), Gaps = 29/267 (10%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPMFVDDLKKFFSTYSSPD 224
           ++ +T ++GLI + +GHS    +H   F  V   GIY    VP   + LK+   T+    
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPK--EKLKESVDTFKIIK 58
Query: 225 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDA 284
             G +V  PYK  VMK   E+   A+ I AVNT+  + S   + G+NTD           
Sbjct: 59  CGGLNVTIPYKVEVMKELYEISEKARKIGAVNTL--KFSREGISGFNTDY---------- 106
Query: 285 IKERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLAS 344
               G+    + F   +   + V+              K   A+ +       R     S
Sbjct: 107 ---IGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYV---VTRNPEKTS 160
Query: 345 DVMGAAR--PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
           ++ G  +   ++++ N    KG ++ N TP GM+P     PV +E +  +    D +Y P
Sbjct: 161 EIYGEFKVISYDELSNL---KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNP 217
Query: 403 RKTRLLKDAEAAGAIIVSGVEMFLRQA 429
            +T  LK A  +G   V+G+ M + QA
Sbjct: 218 VETLFLKYARESGVKAVNGLYMLVSQA 244

>pdb|1NPD|A Chain A, X-Ray Structure Of Shikimate Dehydrogenase Complexed With Nad+ From E.Coli (Ydib) Northeast Structural Genomics Research Consortium (Nesg) Target Er24 Length = 288

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/296 (26%), Positives = 120/296 (40%), Gaps = 30/296 (10%)
Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDD--LKKFFSTYSSPDFA 226
           + A  ++ GL + P+ HS  P   N           Y    VD+           +    
Sbjct: 3   VTAKYELIGLXAYPIRHSLSPEXQNKALEKAGLPFTYXAFEVDNDSFPGAIEGLKALKXR 62
Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNTD    I AI    K
Sbjct: 63  GTGVSXPNKQLACEYVDELTPAAKLVGAINTIVN--DDGYLRGYNTDGTGHIRAI----K 116
Query: 287 ERGYKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIF----DIDFERAKSL 342
           E G+          + G+  VL                 G + +      D  F++A + 
Sbjct: 117 ESGFD---------IKGKTXVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAF 167
Query: 343 A------SDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSE-ETLRDYQ 393
           A      +D +       D   F     +  IL N T +G  P  +   V++   L    
Sbjct: 168 AQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGXKPLENESLVNDISLLHPGL 227
Query: 394 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
           LV + VY P  T+LL+ A+ AG   + G    L Q   QF L+TGK+ P E+++++
Sbjct: 228 LVTECVYNPHXTKLLQQAQQAGCKTIDGYGXLLWQGAEQFTLWTGKDFPLEYVKQV 283

>pdb|3PHG|A Chain A, Crystal Structure Of The Shikimate 5-Dehydrogenase (Aroe) From Helicobacter Pylori Length = 269

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/290 (24%), Positives = 121/290 (41%), Gaps = 45/290 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
           Y+N     G+  + +                   SRG       +DF   + L  D    
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
                     +P K A  ++ NAT   +H   + +P+++E L+ Y    +L +D  Y   
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREI 449
            T  L  A+        G +M + QA   F  F+  + P     E MR +
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSV 262

>pdb|4FOO|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237k Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
           Y+N     G+  + +                   SRG       +DF   + L  D    
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
                     +P K A  ++ NAT   +H   + +P+++E L+ Y    +L +D  Y   
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
            T  L  A+        G +M + +A   F  F+  + P     E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYKAALSFEKFSASQIPYSKAFEVMRSVFL 264

>pdb|4FR5|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210s Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 123/292 (42%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
           Y+N     G+  + +                   SRG       +DF   + L  D    
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
                     +P K A  ++ NAT   +H   + +P+++E L+ Y    +L +D + +  
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LASGF 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
            T  L  A+        G +M + QA   F  F+  + P     E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFL 264

>pdb|4FPX|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237n Mutant From Helicobacter Pylori Length = 271

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 121/292 (41%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
           Y+N     G+  + +                   SRG       +DF   + L  D    
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
                     +P K A  ++ NAT   +H   + +P+++E L+ Y    +L +D  Y   
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
            T  L  A+        G +M +  A   F  F+  + P     E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYNAALSFEKFSASQIPYSKAFEVMRSVFL 264

>pdb|4FOS|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Q237a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 121/292 (41%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
           Y+N     G+  + +                   SRG       +DF   + L  D    
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
                     +P K A  ++ NAT   +H   + +P+++E L+ Y    +L +D  Y   
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYDLAYG-F 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
            T  L  A+        G +M +  A   F  F+  + P     E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYAAALSFEKFSASQIPYSKAFEVMRSVFL 264

>pdb|4FQ8|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (Aroe) Y210a Mutant From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 122/292 (41%), Gaps = 45/292 (15%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       S +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD          ++K++ 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDA----LGFYLSLKQKN 117
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMGA 349
           Y+N     G+  + +                   SRG       +DF   + L  D    
Sbjct: 118 YQNALI-LGAGGSAKALACELKKQGLQVSVLNRSSRG-------LDF--FQRLGCDCF-- 165
Query: 350 ARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QLVFDAVYTPR 403
                     +P K A  ++ NAT   +H   + +P+++E L+ Y    +L +D +    
Sbjct: 166 ---------MEPPKSAFDLIINATSASLH---NELPLNKEVLKGYFKEGKLAYD-LAAGF 212
Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIVL 451
            T  L  A+        G +M + QA   F  F+  + P     E MR + L
Sbjct: 213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVFL 264

>pdb|4FSH|A Chain A, Crystal Structure Of Shikimate Dehydrogenase (aroe) Clinical Variant V2356 From Helicobacter Pylori In Complex With Shikimate Length = 271

Iteration: 1
 Score = 68.6 bits (166), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 71/301 (23%), Positives = 127/301 (42%), Gaps = 63/301 (20%)
Query: 174 KVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFS 229
           K FG+   P+ HSK P++HN  F    + + + G Y P+ +       + +     +G +
Sbjct: 4   KSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYRPILLPLESHIKNEFLHLGLSGAN 63
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   + CD++  +A   A++NT++    + +L+GYNTD          ++K + 
Sbjct: 64  VTLPFKERAFQVCDKIKGIALECASINTLVLE--NDELVGYNTDA----LGFYLSLKHQN 117
Query: 290 YKN----GTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFD-----IDFERAK 340
           Y+N    G+      LA  +                 K +G +V + +     +DF   +
Sbjct: 118 YQNALILGSGGSAKALACGL-----------------KKQGLKVSVLNRSPRGLDF--FQ 158
Query: 341 SLASDVMGAARPFEDILNFQPEKGA--ILANATPLGMHPNTDRVPVSEETLRDY----QL 394
            L  D              +P K A  ++ NAT   ++   + +P+++E L+ Y    +L
Sbjct: 159 RLGCDCF-----------MEPPKSAFDLIINATSASLN---NELPLNKEVLKGYFKEAKL 204
Query: 395 VFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPK----EFMREIV 450
            +D  Y    T  L  A+        G +M + QA   F  F+  + P     E MR + 
Sbjct: 205 AYDLAYG-FLTPFLALAKELKIPFQDGKDMLIYQASLSFEKFSASQIPYSKAFEVMRSVF 263
Query: 451 L 451
           L
Sbjct: 264 L 264

>pdb|3PGJ|A Chain A, 2.49 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae O1 Biovar Eltor Str. N16961 In Complex With Shikimate Length = 302

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 229
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 32  YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 87
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E     ++D + ++ 
Sbjct: 88  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 143
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 348
              G           + ++                + A + + +  F +A+ LA  V   
Sbjct: 144 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 194
Query: 349 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
               A+ FE +     +   ++ N+T     G  P  D V  S  +     + +D +Y  
Sbjct: 195 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 245
Query: 403 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 449
             T   + A   G A  + G+ M + QA   F L+ G +   K+ +RE+
Sbjct: 246 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 294

>pdb|3O8Q|A Chain A, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 281

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 229
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 11  YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 66
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E     ++D + ++ 
Sbjct: 67  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 122
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 348
              G           + ++                + A + + +  F +A+ LA  V   
Sbjct: 123 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 173
Query: 349 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
               A+ FE +     +   ++ N+T     G  P  D V  S  +     + +D +Y  
Sbjct: 174 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 224
Query: 403 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 449
             T   + A   G A  + G+ M + QA   F L+ G +   K+ +RE+
Sbjct: 225 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 273

>pdb|3O8Q|B Chain B, 1.45 Angstrom Resolution Crystal Structure Of Shikimate 5- Dehydrogenase (Aroe) From Vibrio Cholerae Length = 275

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 68/289 (23%), Positives = 120/289 (41%), Gaps = 41/289 (14%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VPM--FVDDLKKFFSTYSSPDFAGFS 229
           + +   P+ HSK P +H    R    + IY    VP+  F +  K FF+        G +
Sbjct: 5   YAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR----GCN 60
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
           V  P+KE   +F D +   A+   AVNT +++  DG+++G NTD E     ++D + ++ 
Sbjct: 61  VTVPFKEEAYRFADRLTERARLAGAVNT-LKKLDDGEILGDNTDGEG---LVQDLLAQQV 116
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGARVVIFDIDFERAKSLASDVMG- 348
              G           + ++                + A + + +  F +A+ LA  V   
Sbjct: 117 LLKGAT---------ILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAY 167
Query: 349 ---AARPFEDILNFQPEKGAILANATPL---GMHPNTDRVPVSEETLRDYQLVFDAVYTP 402
               A+ FE +     +   ++ N+T     G  P  D V  S  +     + +D +Y  
Sbjct: 168 GEVKAQAFEQL----KQSYDVIINSTSASLDGELPAIDPVIFSSRS-----VCYDMMYGK 218
Query: 403 RKTRLLKDAEAAG-AIIVSGVEMFLRQAIGQFNLFTG-KEAPKEFMREI 449
             T   + A   G A  + G+ M + QA   F L+ G +   K+ +RE+
Sbjct: 219 GYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILREL 267

>pdb|3U62|A Chain A, Crystal Structure Of Shikimate Dehydrogenase From Thermotoga Maritima Length = 253

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 77/286 (26%), Positives = 123/286 (43%), Gaps = 47/286 (16%)
Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIY----VP--MFVDDLKKFFSTYSSPDFAGFS 229
           F +I  PV HS  P L+N  F+    N  Y    +P   F  ++++    Y      GF+
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILEEYD-----GFN 57
Query: 230 VGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERG 289
              P+KE VM++ +     AQ I AVN + R    GK  GYNTD    + ++E    +  
Sbjct: 58  ATIPHKERVMRYVEPSED-AQRIKAVNCVFR----GK--GYNTDWVGVVKSLEGVEVKE- 109
Query: 290 YKNGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRGAR-VVIFDIDFERAKSLASDVMG 348
                   G      ++ L                 G + + + +   ERAK+L   V  
Sbjct: 110 -PVVVVGAGGAARAVIYALL--------------QMGVKDIWVVNRTIERAKALDFPV-- 152
Query: 349 AARPFE-DILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL 407
             + F  D L+   +K   L N T +GM    + +PVS+++L++  LV+D +Y    T L
Sbjct: 153 --KIFSLDQLDEVVKKAKSLFNTTSVGM--KGEELPVSDDSLKNLSLVYDVIYF--DTPL 206
Query: 408 LKDAEAAGAI-IVSGVEMFLRQAIGQFNLF--TGKEAPKEFMREIV 450
           +  A   G   I+ G  MF  QA+    ++    +E  KE   E++
Sbjct: 207 VVKARKLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVFKEVFGEVL 252

>pdb|1NYT|A Chain A, Shikimate Dehydrogenase Aroe Complexed With Nadp+ Length = 271

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVN----YNGIYVPM--FVDDLKKFFSTYSSPDFAG 227
           + + +   P+ HSK P +H    + +N    Y  +  P+  F++ L  FFS        G
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGK----G 57
Query: 228 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIE 282
            +V  P+KE      DE+   A    AVNT++R   DG+L+G NTD    ++ +E
Sbjct: 58  ANVTVPFKEEAFARADELTERAALAGAVNTLMRL-EDGRLLGDNTDGVGLLSDLE 111

>pdb|1QFE|A Chain A, The Structure Of Type I 3-Dehydroquinate Dehydratase From Salmonella Typhi Length = 252

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 6/140 (4%)
Query: 35  DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDC-ETPSEEDLGYLVSRMQATGADIIK 93
           D +D EL      +        +   ++V  N D  +TPS E++   + +MQA GADI K
Sbjct: 111 DMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADIPK 170
Query: 94  LVF---SVNDI-TEIARIFQLLSH-CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
           +     S +D+ T +    ++  H    P+I  S+ + G++S+L    F  A  +G++K 
Sbjct: 171 IAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQ 230
Query: 149 TPVLGLPTVESLRQTYKVEH 168
               G   V  LR    + H
Sbjct: 231 ASAPGQIAVNDLRSVLMILH 250

>pdb|3PWZ|A Chain A, Crystal Structure Of An Ael1 Enzyme From Pseudomonas Putida Length = 272

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/269 (21%), Positives = 105/269 (39%), Gaps = 24/269 (8%)
Query: 176 FGLISKPVGHSKGPILH----NPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVG 231
           + +I +P+ H+K P++H      + + + Y  I   +  DD +     + S    G ++ 
Sbjct: 5   YAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSL--DDFEAQVLQFRSEGGKGMNIT 62
Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+K    +  D     AQ   A N +  +  DG+++  N D    +  IE+        
Sbjct: 63  APFKLRAFELADRRSERAQLARAANAL--KFEDGRIVAENFDGIGLLRDIEE-------- 112
Query: 292 NGTASFGSPLAGRMFVLXXXXXXXXXXXXXXKSRG-ARVVIFDIDFERAKSLASDVMGAA 350
               + G PL  R  +L                 G + +VI + D  +A +L +++  + 
Sbjct: 113 ----NLGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSR 168
Query: 351 RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD 410
                    + +   I+ NAT   +    D  P+  + L +  L ++  Y    T  L+ 
Sbjct: 169 LRISRYEALEGQSFDIVVNATSASL--TADLPPLPADVLGEAALAYELAYGKGLTPFLRL 226
Query: 411 AEAAG-AIIVSGVEMFLRQAIGQFNLFTG 438
           A   G A +  GV M + QA   F  + G
Sbjct: 227 AREQGQARLADGVGMLVEQAAEAFAWWRG 255

>pdb|3M7W|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Covalent Complex With Dehydroquinate Length = 255

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 35  DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
           D +D EL    + +      +HQ     I+S +   +TP+ E++   + +MQ  GADI K
Sbjct: 114 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK 173
Query: 94  LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
           +        ++  +       Q      PII  S+ + G++S+L    F  A  +G++K 
Sbjct: 174 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 233
Query: 149 TPVLGLPTVESLRQTYKVEH 168
               G  +V  LR    + H
Sbjct: 234 ASAPGQISVADLRTVLTILH 253

>pdb|3O1N|A Chain A, 1.03 Angstrom Crystal Structure Of Q236a Mutant Type I Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Length = 276

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 35  DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
           D +D EL    + +      +HQ     I+S +   +TP+ E++   + +MQ  GADI K
Sbjct: 135 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK 194
Query: 94  LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
           +        ++  +       Q      PII  S+ + G++S+L    F  A  +G++K 
Sbjct: 195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 254
Query: 149 TPVLGLPTVESLRQTYKVEH 168
               G  +V  LR    + H
Sbjct: 255 ASAPGAISVADLRTVLTILH 274

>pdb|3L2I|A Chain A, 1.85 Angstrom Crystal Structure Of The 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2. Length = 276

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 35  DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
           D +D EL    + +      +HQ     I+S +   +TP+ E++   + +MQ  GADI K
Sbjct: 135 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK 194
Query: 94  LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
           +        ++  +       Q      PII  S+ + G++S+L    F  A  +G++K 
Sbjct: 195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 254
Query: 149 TPVLGLPTVESLRQTYKVEH 168
               G  +V  LR    + H
Sbjct: 255 ASAPGQISVADLRTVLTILH 274

>pdb|4GUF|A Chain A, 1.5 Angstrom Crystal Structure Of The Salmonella Enterica 3- Dehydroquinate Dehydratase (arod) E86a Mutant Length = 276

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Query: 35  DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
           D +D EL    + +      +HQ     I+S +   +TP+ E++   + +MQ  GADI K
Sbjct: 135 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPK 194
Query: 94  LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
           +        ++  +       Q      PII  S+ + G++S+L    F  A  +G++K 
Sbjct: 195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 254
Query: 149 TPVLGLPTVESLRQTYKVEH 168
               G  +V  LR    + H
Sbjct: 255 ASAPGQISVADLRTVLTILH 274

>pdb|3JS3|A Chain A, Crystal Structure Of Type I 3-Dehydroquinate Dehydratase (Arod) From Clostridium Difficile With Covalent Reaction Intermediate Length = 258

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 6/141 (4%)
Query: 34  ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADII 92
            D +D EL +   ++ +  + +H+   + I+S +   +TP +E++   + RMQ  GAD+ 
Sbjct: 114 VDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSRLCRMQELGADLP 173
Query: 93  KLVFSVNDITEIARIFQLLS-----HCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLK 147
           K+     +  ++  + +  +     +   PII  S+   G++S+L    F  AL +G+ K
Sbjct: 174 KIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAK 233
Query: 148 GTPVLGLPTVESLRQTYKVEH 168
                G  + + L     + H
Sbjct: 234 SVSAPGQISFKELNSVLNLLH 254

>pdb|3NNT|A Chain A, Crystal Structure Of K170m Mutant Of Type I 3-Dehydroquinate Dehydratase (Arod) From Salmonella Typhimurium Lt2 In Non-Covalent Complex With Dehydroquinate. Length = 276

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/140 (24%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 35  DYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGYLVSRMQATGADIIK 93
           D +D EL    + +      +HQ     I+S +   +TP+ E++   + +MQ  GADI  
Sbjct: 135 DMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRKMQELGADIPM 194
Query: 94  LVFSVNDITEIARIFQLLSHCQV-----PIIAYSVGERGLVSQLLSPKFNGALVYGSLKG 148
           +        ++  +       Q      PII  S+ + G++S+L    F  A  +G++K 
Sbjct: 195 IAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKK 254
Query: 149 TPVLGLPTVESLRQTYKVEH 168
               G  +V  LR    + H
Sbjct: 255 ASAPGQISVADLRTVLTILH 274

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	454
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	0.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	1e-108
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	1e-105
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	1e-105
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	1e-103
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	7e-98
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	1e-96
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	4e-95
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	4e-94
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	1e-93
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	1e-84
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	3e-74
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	1e-68
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	3e-61
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	7e-61
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	3e-59
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	2e-55
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	2e-34
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	5e-33
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	6e-33
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	5e-31
3js3_A	258	3-dehydroquinate dehydratase; AROD, covalent react	1e-29
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	2e-29
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	6e-29
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	5e-26
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	2e-04
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	3e-04
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	5e-04
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	8e-04

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* Length = 523

 Score =  527 bits (1360), Expect = 0.0
 Identities = 232/447 (51%), Positives = 304/447 (68%), Gaps = 2/447 (0%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
           RPKW GG YEGDE++R + L LA +LGADY+D EL+VAS  +           + IVS +
Sbjct: 66  RPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSH 125

Query: 67  LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
               TPS EDL  LV+R+Q TGADI+K+  +  DI ++AR+F + S  QVP I   +GER
Sbjct: 126 NYQNTPSVEDLDGLVARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGER 185

Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVL--GLPTVESLRQTYKVEHINADTKVFGLISKPVG 184
           GL+S++L  KF G L +G+L  + V   G PT++ L   Y    I  DTKV+G+I KPV 
Sbjct: 186 GLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIKDLLDLYNFRRIGPDTKVYGIIGKPVS 245

Query: 185 HSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE 244
           HSK PI+HN  F+ V++NG+YV + VD+L  F   YSS DFAGFS   P+KEA ++ CDE
Sbjct: 246 HSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAALQCCDE 305

Query: 245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGR 304
           V PLA++I AVNTI+RR SDGKL+GYNTDC  SI+AIED ++  G  +   S  SPLA +
Sbjct: 306 VDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASK 365

Query: 305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKG 364
             V+ GAGGAG+ALA+GAK +GA+VVI +  +ERA  LA  + G A    D+ N+ PE G
Sbjct: 366 TVVVIGAGGAGKALAYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDG 425

Query: 365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM 424
            +LAN T +GM PN +  P+S++ L+ Y LVFDAVYTPR TRLL++AE +GAI VSG EM
Sbjct: 426 MVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESGAITVSGSEM 485

Query: 425 FLRQAIGQFNLFTGKEAPKEFMREIVL 451
           F+RQA  QF +FTG  APKE   +I+ 
Sbjct: 486 FVRQAYEQFEIFTGLPAPKELYWQIMS 512

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* Length = 312

 Score =  321 bits (824), Expect = e-108
 Identities = 85/313 (27%), Positives = 130/313 (41%), Gaps = 30/313 (9%)

Query: 153 GLPTVESLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-- 210
                E+L        + A  ++ GL++ P+ HS  P + N           Y+   V  
Sbjct: 11  VDLGTENLYFQSNAMDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDN 70

Query: 211 DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGY 270
                      +    G  V  P K+   ++ DE+ P A+ + A+NTI+    DG L GY
Sbjct: 71  TTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGY 128

Query: 271 NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RV 329
           NTD    I AI+++             G  + G+  VL GAGGA  A+   A   G   +
Sbjct: 129 NTDGTGHIRAIKES-------------GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEI 175

Query: 330 VIF---DIDFERAKSLASDVMGAARPF--------EDILNFQPEKGAILANATPLGMHPN 378
            +F   D  FE+A + A  V               +           IL N T +GM P 
Sbjct: 176 KLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPL 235

Query: 379 TDRVPV-SEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFT 437
            +   +     LR   LV + VY P  T+LL+ A+ AG   + G  M L Q   QF L+T
Sbjct: 236 ENESLIGDVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWT 295

Query: 438 GKEAPKEFMREIV 450
           GK  P +++++++
Sbjct: 296 GKAFPLDYVKQVM 308

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 Length = 287

 Score =  312 bits (803), Expect = e-105
 Identities = 105/295 (35%), Positives = 152/295 (51%), Gaps = 27/295 (9%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   V  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           GF+V  P+K  +MK+ DE+   AQ I AVNTI     DGK IGYNTD   +  A+E+   
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEE-- 122

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
                         +  +  V+ GAGGA RA+AF    +   ++I +   E+A++LA ++
Sbjct: 123 -----------IGRVKDKNIVIYGAGGAARAVAFELA-KDNNIIIANRTVEKAEALAKEI 170

Query: 347 -------MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP-VSEETLRDYQLVFDA 398
                   G    F   L+   +   I+ NATP+GM+PN D  P V  E LR+  +V D 
Sbjct: 171 AEKLNKKFGEEVKFSG-LDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDL 229

Query: 399 VYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
           +Y P +T LLK+A+   A  ++G+ M + Q    F ++TG E   E M+  ++ K
Sbjct: 230 IYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDK 284

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  311 bits (800), Expect = e-105
 Identities = 76/286 (26%), Positives = 131/286 (45%), Gaps = 27/286 (9%)

Query: 169 INADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 227
           IN DT++   L  +P   + G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 228 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKE 287
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNTD  A +  IE     
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKYHLN 117

Query: 288 RGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDV 346
           +               ++ V  G+GG  +A+    K+ G  ++ I+  + +  + LA+  
Sbjct: 118 KN-------------AKVIVH-GSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALY 163

Query: 347 MGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVS--EETLRDYQLVFDAVYTPRK 404
                 +  I + + ++  IL N T +GM    + + ++  +  + +  + FD V  P +
Sbjct: 164 -----GYAYINSLENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVE 218

Query: 405 TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
           T  ++ A+A G   +SG  + + QA+ QF L+T +    E + E  
Sbjct: 219 TPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAA 264

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* Length = 315

 Score =  308 bits (791), Expect = e-103
 Identities = 87/298 (29%), Positives = 140/298 (46%), Gaps = 30/298 (10%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           I   T++ GLI+ P+ HS  P +HN  F  +  + +Y+   V   +LK     + + +  
Sbjct: 33  ITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLR 92

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G++V  P K  + K+ D++ P A+ + AVNT++    DG L G+ TD    + A+++A  
Sbjct: 93  GWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-- 148

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF---DIDFERAKSL 342
                      G  + G+   + GAGGA  A+   A   G   + IF   D  +  A+  
Sbjct: 149 -----------GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKT 197

Query: 343 ASDV------MGAARPFEDILNFQPE--KGAILANATPLGMHPNTDRVPV-SEETLRDYQ 393
              +             ED    + E  +  I  NAT +GM P      + S + LR   
Sbjct: 198 VEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFEGETLLPSADMLRPEL 257

Query: 394 LVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL 451
           +V D VY P KTRLL+ AE  G   ++G+ M L Q    F ++T KE P ++++EI+ 
Sbjct: 258 IVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEILF 315

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} Length = 297

 Score =  294 bits (756), Expect = 7e-98
 Identities = 90/290 (31%), Positives = 139/290 (47%), Gaps = 19/290 (6%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
                KV+GLI  PV HS  P++HN  F  +     Y    V    +    +   +   A
Sbjct: 19  QGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIA 78

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P+K AV+ F DEV   A+ I AVNTII    DG+L+GYNTD    + A+E+   
Sbjct: 79  GVNVTIPHKLAVIPFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEE-- 134

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASD 345
                         L G+  ++ GAGG  R + F   S  A R+ + +   E+A+ L  +
Sbjct: 135 ----------MNITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVRE 184

Query: 346 VMGAARPFEDI--LNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR 403
                  +  +     +  +  I+ N T +GMHP  +  P+S E LR   +V D +Y P 
Sbjct: 185 GDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIVSDIIYNPL 244

Query: 404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
           +T+ LK+A+A GA + +GV M + Q    F  +TG+      M+++V+  
Sbjct: 245 ETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIEA 294

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A Length = 283

 Score =  291 bits (746), Expect = 1e-96
 Identities = 81/295 (27%), Positives = 118/295 (40%), Gaps = 29/295 (9%)

Query: 172 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPD 224
           D+ + GLI + +  S+ P +H           +Y  +          DLK          
Sbjct: 3   DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLG 62

Query: 225 FAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDA 284
           F G ++  PYK+AV+   DEV   A  + AVNT++     G   G+NTD       +E+ 
Sbjct: 63  FNGLNITHPYKQAVLPLLDEVSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG 121

Query: 285 IKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLA 343
                                 V  GAGG G A+A+   + G  ++ + D+D  RA++LA
Sbjct: 122 -------------LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALA 168

Query: 344 SDVMGAARPF------EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFD 397
             +  A             +         + NATP+GM  +          L     V D
Sbjct: 169 DVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVGD 227

Query: 398 AVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452
            VY P +T LLK A A G   + G  M + QA+  F LFTG E     MRE  L+
Sbjct: 228 VVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS 282

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A Length = 275

 Score =  286 bits (735), Expect = 4e-95
 Identities = 78/293 (26%), Positives = 133/293 (45%), Gaps = 23/293 (7%)

Query: 164 YKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYS 221
           +    INA T+++G+I  PV HS  P+  N   R+   N +Y+   +  ++LKK F  + 
Sbjct: 3   HHHHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFK 62

Query: 222 SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAI 281
           +    G +V  P+KE ++   D V   A+ I AVNT+     +GK  GYNTD    + ++
Sbjct: 63  ALKVKGINVTVPFKEEIIPLLDYVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSL 120

Query: 282 EDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS 341
           +                  +  +  ++ GAGGA RA+ +     GA+V +++   E+A  
Sbjct: 121 KSL-------------IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIK 167

Query: 342 LASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401
           LA           +      +K  ++ N T +G+    D    + + ++   +V D +Y 
Sbjct: 168 LAQKFPLEV---VNSPEEVIDKVQVIVNTTSVGLKDE-DPEIFNYDLIKKDHVVVDIIYK 223

Query: 402 PRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
              T+LLK A+  GA ++ G+ M L Q I  F ++ G E P       V    
Sbjct: 224 E--TKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRDLR 274

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} Length = 282

 Score =  284 bits (729), Expect = 4e-94
 Identities = 73/284 (25%), Positives = 119/284 (41%), Gaps = 23/284 (8%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           ++ +T ++GLI + +GHS    +H   F  V   GIY    V  + LK+   T+      
Sbjct: 1   MSLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCG 60

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  PYK  VMK   E+   A+ I AVNT+        + G+NTD       +     
Sbjct: 61  GLNVTIPYKVEVMKELYEISEKARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSK--- 115

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFERAKSLASD 345
                     F   +   + V+ G+GGA RA+    K   A+ + +   + E+   +  +
Sbjct: 116 ----------FRVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGE 165

Query: 346 VMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKT 405
                            KG ++ N TP GM+P     PV +E +  +    D +Y P +T
Sbjct: 166 F-----KVISYDELSNLKGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVET 220

Query: 406 RLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREI 449
             LK A  +G   V+G+ M + QA     ++      +  + EI
Sbjct: 221 LFLKYARESGVKAVNGLYMLVSQAAASEEIWNDISIDEIIVDEI 264

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* Length = 263

 Score =  282 bits (725), Expect = 1e-93
 Identities = 84/281 (29%), Positives = 121/281 (43%), Gaps = 25/281 (8%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 231
             F ++  PV HS  P +H      +   G Y       + L           F G ++ 
Sbjct: 2   LRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRR-AFRGVNLT 60

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P KEA +   D V P AQ I AVNT+++   +G+L G+NTD    + A++         
Sbjct: 61  LPLKEAALAHLDWVSPEAQRIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG------- 111

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
                 G PL G   VL GAGGAGRA+AF  +  G  V +++   +RA +LA +    A 
Sbjct: 112 ------GIPLKGPALVL-GAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAV 164

Query: 352 PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDA 411
           P E           +L NAT +G+       P+  E   +     D VY P  TR L++A
Sbjct: 165 PLEKAREA-----RLLVNATRVGLEDP-SASPLPAELFPEEGAAVDLVYRPLWTRFLREA 218

Query: 412 EAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA 452
           +A G  + +G+ M   Q    F L+TG       M E    
Sbjct: 219 KAKGLKVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARR 259

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* Length = 277

 Score =  260 bits (666), Expect = 1e-84
 Identities = 76/281 (27%), Positives = 131/281 (46%), Gaps = 22/281 (7%)

Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFP 233
           F +I  P+ HS  P++H+  F+ +N    Y  + V  +  +      S     GF+V  P
Sbjct: 3   FAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIP 62

Query: 234 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 293
           +KE ++ + D+++  A+++ AVNT++ +  DGK IGYNTD    +  ++           
Sbjct: 63  HKERIIPYLDDINEQAKSVGAVNTVLVK--DGKWIGYNTDGIGYVNGLKQI--------- 111

Query: 294 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARP 352
                  +     ++ GAGGA + +A          + + +    R  + + ++      
Sbjct: 112 ----YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNI--NKIN 165

Query: 353 FEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE 412
                +   E   I+ N TP GM+ NTD   +S   L  + LV D VY P KT +L +AE
Sbjct: 166 LSHAESHLDE-FDIIINTTPAGMNGNTD-SVISLNRLASHTLVSDIVYNPYKTPILIEAE 223

Query: 413 AAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
             G  I +G++MF+ Q    F ++T  E   + M+ IV+ K
Sbjct: 224 QRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQK 264

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* Length = 269

 Score =  233 bits (596), Expect = 3e-74
 Identities = 64/287 (22%), Positives = 114/287 (39%), Gaps = 31/287 (10%)

Query: 173 TKVFGLISKPVGHSKGPILHNPTFR----HVNYNGIYVPMFVDDLKKFFSTYSSPDFAGF 228
            K FG+   P+ HSK P++HN  F      + + G Y P+ +       S +     +G 
Sbjct: 3   LKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGA 62

Query: 229 SVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKER 288
           +V  P+KE   + CD++  +A    AVNT++    + +L+GYNTD      +++      
Sbjct: 63  NVTLPFKERAFQVCDKIKGIALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ----- 115

Query: 289 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 348
                          +  ++ GAGG+ +ALA   K +G +V + +            +  
Sbjct: 116 ------------KNYQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLD-FFQRLGC 162

Query: 349 AARPFEDILNFQPEKGAILANATPLGMHPNTD-RVPVSEETLRDYQLVFDAVYTPRKTRL 407
                     F      ++ NAT   +H        V +   ++ +L +D  Y    T  
Sbjct: 163 DCFMEPPKSAFD-----LIINATSASLHNELPLNKEVLKGYFKEGKLAYDLAYGF-LTPF 216

Query: 408 LKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           L  A+        G +M + QA   F  F+  + P     E++ + F
Sbjct: 217 LSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF 263

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} Length = 253

 Score =  218 bits (557), Expect = 1e-68
 Identities = 74/280 (26%), Positives = 119/280 (42%), Gaps = 37/280 (13%)

Query: 176 FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFP 233
           F +I  PV HS  P L+N  F+    N  Y    +  +            ++ GF+   P
Sbjct: 3   FCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRILE-EYDGFNATIP 61

Query: 234 YKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNG 293
           +KE VM++ +     AQ I AVN + R        GYNTD    + ++E           
Sbjct: 62  HKERVMRYVEPS-EDAQRIKAVNCVFR------GKGYNTDWVGVVKSLE----------- 103

Query: 294 TASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARP 352
               G  +   + V+ GAGGA RA+ +     G   + + +   ERAK+L   V      
Sbjct: 104 ----GVEVKEPVVVV-GAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPV--KIFS 156

Query: 353 FEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAE 412
            + +     +    L N T +GM    + +PVS+++L++  LV+D +Y    T L+  A 
Sbjct: 157 LDQLDEVVKK-AKSLFNTTSVGMKG--EELPVSDDSLKNLSLVYDVIYFD--TPLVVKAR 211

Query: 413 AAGA-IIVSGVEMFLRQAIGQFNLFTGKEAP--KEFMREI 449
             G   I+ G  MF  QA+    ++   +    KE   E+
Sbjct: 212 KLGVKHIIKGNLMFYYQAMENLKIWGIYDEEVFKEVFGEV 251

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 Length = 271

 Score =  199 bits (509), Expect = 3e-61
 Identities = 66/284 (23%), Positives = 108/284 (38%), Gaps = 20/284 (7%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 231
           + + +   P+ HSK P +H    + +N    Y  +    +D     + + S    G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+KE      DE+   A    AVNT++R   DG+L+G NTD    ++ +E         
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERL------- 113

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
                      G   +L GAGGA R +     S    V I +    RA+ LA        
Sbjct: 114 ------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGS 167

Query: 352 PFEDILNFQPEKGA-ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD 410
                ++        ++ NAT  G+    D   +    +      +D  Y   KT  L  
Sbjct: 168 IQALSMDELEGHEFDLIINATSSGISG--DIPAIPSSLIHPGIYCYDMFYQKGKTPFLAW 225

Query: 411 AEAAGAIIVS-GVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
            E  G+   + G+ M + QA   F L+ G     E + + +  +
Sbjct: 226 CEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE 269

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* Length = 281

 Score =  198 bits (507), Expect = 7e-61
 Identities = 62/293 (21%), Positives = 112/293 (38%), Gaps = 28/293 (9%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFA 226
           + +    + +   P+ HSK P +H    R    + IY    V  D   +    + +    
Sbjct: 4   MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGR 63

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIK 286
           G +V  P+KE   +F D +   A+   AVNT+ +   DG+++G NTD E  +  +     
Sbjct: 64  GCNVTVPFKEEAYRFADRLTERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-- 120

Query: 287 ERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASD 345
                         L G   +L GAGGA R +      +  A + + +  F +A+ LA  
Sbjct: 121 -----------QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAEL 169

Query: 346 VMGA----ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT 401
           V       A+ FE +     +   ++ N+T   +    +   +         + +D +Y 
Sbjct: 170 VAAYGEVKAQAFEQLK----QSYDVIINSTSASLDG--ELPAIDPVIFSSRSVCYDMMYG 223

Query: 402 PRKTRLLKDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
              T   + A   G    + G+ M + QA   F L+ G     + +   +   
Sbjct: 224 KGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRKN 276

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} Length = 272

 Score =  194 bits (496), Expect = 3e-59
 Identities = 62/285 (21%), Positives = 110/285 (38%), Gaps = 20/285 (7%)

Query: 173 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSV 230
           +  + +I +P+ H+K P++H    +  N    Y  +    DD +     + S    G ++
Sbjct: 2   SDRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNI 61

Query: 231 GFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGY 290
             P+K    +  D     AQ   A N +     DG+++  N D    +  IE+ +     
Sbjct: 62  TAPFKLRAFELADRRSERAQLARAANALKFE--DGRIVAENFDGIGLLRDIEENL----- 114

Query: 291 KNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGA 349
                  G PL  R  +L GAGGA R         G + +VI + D  +A +L +++  +
Sbjct: 115 -------GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHS 167

Query: 350 ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLK 409
                     + +   I+ NAT   +    D  P+  + L +  L ++  Y    T  L+
Sbjct: 168 RLRISRYEALEGQSFDIVVNATSASLTA--DLPPLPADVLGEAALAYELAYGKGLTPFLR 225

Query: 410 DAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
            A   G   +  GV M + QA   F  + G       +   +   
Sbjct: 226 LAREQGQARLADGVGMLVEQAAEAFAWWRGVRPDTRAVINQLTIP 270

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* Length = 272

 Score =  184 bits (469), Expect = 2e-55
 Identities = 58/287 (20%), Positives = 106/287 (36%), Gaps = 25/287 (8%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVG 231
            ++ +   P+  SK P++ N      +    Y+      D  ++    +      G ++ 
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYK 291
            P+KE   +  DE    A+   A NT+ +   DGKL   NTD    +T ++         
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNTDGIGLVTDLQRL------- 113

Query: 292 NGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
                       +  ++ GAGGA + +          +V+ +  F + K LA        
Sbjct: 114 ------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGN 167

Query: 352 PFEDILNFQPEKGA-ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT-PRKTRLLK 409
                ++  P +   ++ NAT  G+        V  E L+     +D  Y     T  + 
Sbjct: 168 IQAVSMDSIPLQTYDLVINATSAGLSG--GTASVDAEILKLGSAFYDMQYAKGTDTPFIA 225

Query: 410 DAEAAGAIIVS-GVEMFLRQAIGQFNLFTGKEAP----KEFMREIVL 451
             ++ G   VS G  M + QA   F+L+ G         E +++ +L
Sbjct: 226 LCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYEQLKKAML 272

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A Length = 219

 Score =  127 bits (320), Expect = 2e-34
 Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 5/162 (3%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCN 66
           R    GG    +  +  E L       +DY D EL     ++     + ++G + I+S +
Sbjct: 61  RSPEEGGREVKNREELFEELSP----LSDYTDIELSSRGLLVKLYNITKEAGKKLIISYH 116

Query: 67  LDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGER 126
               TP    +  ++      G  I K+    N   ++AR+  +    +   I  S+G+ 
Sbjct: 117 NFELTPPNWIIREVLREGYRYG-GIPKIAVKANSYEDVARLLCISRQVEGEKILISMGDY 175

Query: 127 GLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 168
           G +S+L    F   + Y SL+     G   +E + +  K  +
Sbjct: 176 GKISRLAGYVFGSVITYCSLEKAFAPGQIPLEEMVELRKKFY 217

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* Length = 238

 Score =  123 bits (311), Expect = 5e-33
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 8/168 (4%)

Query: 7   RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQY---SSHQSGTRFI 62
           R K  GG  +      L  +  LA   G D +D E +   +I   Q       Q     I
Sbjct: 70  RTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVI 129

Query: 63  VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPI 118
           +S +    TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S         +
Sbjct: 130 ISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV 189

Query: 119 IAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 166
           +  S+ + GL+S+     F GAL YG +      G   V  L+    +
Sbjct: 190 VGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 237

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} Length = 257

 Score =  124 bits (312), Expect = 6e-33
 Identities = 31/168 (18%), Positives = 63/168 (37%), Gaps = 6/168 (3%)

Query: 7   RPKWAGGLYEGDEHKRLEAL--HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVS 64
           R +  GG         +  L   +      D VD+EL     I   +  + +     +VS
Sbjct: 86  RSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGERIADVRRMTEECSVWLVVS 145

Query: 65  CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQ----VPIIA 120
            +    TP +E L   + + +  GADI K+        ++  + Q     +    +P+I 
Sbjct: 146 RHYFDGTPRKETLLADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARRELAIPLIT 205

Query: 121 YSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 168
            ++G  G +++L    F  A+ +     +   G   ++ +R    +  
Sbjct: 206 MAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPGQIPIDDVRTVLSILQ 253

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} Length = 196

 Score =  117 bits (294), Expect = 5e-31
 Identities = 33/161 (20%), Positives = 67/161 (41%), Gaps = 12/161 (7%)

Query: 7   RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 65
           R    GG +EGDE +R+E +    + L  DYVD E  +  +             R I S 
Sbjct: 45  RRVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSA-------FDFNCRIIESY 97

Query: 66  NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGE 125
           +    TP   +L      ++    D++K+        ++  I ++L++    ++A+ +GE
Sbjct: 98  HNFIRTPDYSEL---KGIVEGRRGDLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGE 153

Query: 126 RGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 166
           R   +++L+       +Y  +      G  +++  R+    
Sbjct: 154 RFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDDAREIISR 194

>3js3_A 3-dehydroquinate dehydratase; AROD, covalent reaction intermediate, amino-acid biosynthesis, aromatic amino acid biosynthesis, lyase; HET: DHS; 2.20A {Clostridium difficile} Length = 258

 Score =  115 bits (289), Expect = 1e-29
 Identities = 35/175 (20%), Positives = 72/175 (41%), Gaps = 7/175 (4%)

Query: 5   VSRPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGK-QYSSHQSGTRFI 62
             R    GG               ++     D +D EL +   ++ +    +H+   + I
Sbjct: 84  TFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVI 143

Query: 63  VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQVP 117
           +S +   +TP +E++   + RMQ  GAD+ K+     +  ++  + +  +     +   P
Sbjct: 144 ISNHDFNKTPKKEEIVSRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRP 203

Query: 118 IIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHINAD 172
           II  S+   G++S+L    F  AL +G+ K     G  + + L     + H + +
Sbjct: 204 IITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPGQISFKELNSVLNLLHKSIN 258

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 3nnt_A* 3oex_A 3m7w_A 1gqn_A 1l9w_A* 1qfe_A* Length = 276

 Score =  115 bits (288), Expect = 2e-29
 Identities = 40/169 (23%), Positives = 70/169 (41%), Gaps = 7/169 (4%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGK-QYSSHQSGTRFIVS 64
           R    GG       + ++    A D G  D +D EL    + +      +HQ     I+S
Sbjct: 106 RSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMS 165

Query: 65  CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQVPII 119
            +   +TP+ E++   + +MQ  GADI K+        ++  +          +   PII
Sbjct: 166 NHDFHKTPAAEEIVQRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPII 225

Query: 120 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 168
             S+ + G++S+L    F  A  +G++K     G  +V  LR    + H
Sbjct: 226 TMSMSKTGVISRLAGEVFGSAATFGAVKKASAPGAISVADLRTVLTILH 274

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1} Length = 231

 Score =  112 bits (282), Expect = 6e-29
 Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 12/170 (7%)

Query: 7   RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 65
           R    GG       + ++ +  +      DY+DFE     ++  +           I+S 
Sbjct: 65  RTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEMLDFP----NLILSY 120

Query: 66  NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQVPIIA 120
           +   ETP  E+L    S M      ++K+        ++  +          + +     
Sbjct: 121 HNFEETP--ENLMEAFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQEFAT 178

Query: 121 YSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 170
            S+G+ G +S+        +  Y SL      G  T+  +++  +V  ++
Sbjct: 179 ISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQVTLNDMKRIIEVLEMD 228

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans} Length = 259

 Score =  105 bits (263), Expect = 5e-26
 Identities = 32/170 (18%), Positives = 67/170 (39%), Gaps = 12/170 (7%)

Query: 7   RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSC 65
           R +  GG         L  +  +A     DY+DFE     ++L + Y      +  I+S 
Sbjct: 96  RTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMYDF----SNLILSY 151

Query: 66  NLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLS-----HCQVPIIA 120
           +   ETP  E+L  + S + A    ++K+     +  ++  +          +     + 
Sbjct: 152 HNFEETP--ENLMEVFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLNPNQEYVT 209

Query: 121 YSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEHIN 170
            S+ + G +S+L +     +  + SL+     G  ++  +R+  +V   N
Sbjct: 210 MSMSKLGRISRLAADLIGSSWTFASLEQESAPGQISLADMRKIKEVLDAN 259

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 81/517 (15%), Positives = 148/517 (28%), Gaps = 185/517 (35%)

Query: 4   NVSRPKWAGGLYEGDEHKRL-EALHLAEDLGADYVDFELKVASNIL-------GKQ---- 51
           NVSR +          + +L +AL             EL+ A N+L       GK     
Sbjct: 130 NVSRLQ---------PYLKLRQAL------------LELRPAKNVLIDGVLGSGKTWVAL 168

Query: 52  --YSSHQSGTRF---IVSCNL-DCETPSE-----EDLGYLVSRMQATGADIIK-LVFSVN 99
               S++   +    I   NL +C +P       + L Y +     + +D    +   ++
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 100 DI-TEIARIFQLLSHCQVPII-----------AYSVGERGLV---SQLLSPKFNGALVYG 144
            I  E+ R+ +   +    ++           A+++  + L+    + ++   + A    
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 145 SLKGTPVLGLPTVESLRQTYKVEHINADTKVFGL------ISKPVGHS------KGPILH 192
                  + L   E      K      D +   L       + P   S      +  +  
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLTTN-PRRLSIIAESIRDGLAT 343

Query: 193 NPTFRHVNYNGI--YVPMFVDDL-----KKFFSTYSSPDFAGF--SVGFPYK-------- 235
              ++HVN + +   +   ++ L     +K F        + F  S   P          
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-----RLSVFPPSAHIPTILLSLIWFD 398

Query: 236 ---EAVMKFCDEVHP--LAQAIAAVNTI--------IRRPSDG------KLIG-YNT--- 272
                VM   +++H   L +     +TI        ++   +        ++  YN    
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 273 -DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI 331
            D +  I    D      Y      F S +      L       R   F       R+V 
Sbjct: 459 FDSDDLIPPYLD-----QY------FYSHIG---HHLKNIEHPERMTLF-------RMVF 497

Query: 332 FDIDFERAK----SLASDVMGAA----------------------RPFEDILNFQPEKGA 365
            D  F   K    S A +  G+                       R    IL+F P+   
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557

Query: 366 ILANATPLGMHPNTDRV---------PVSEETLRDYQ 393
            L           TD +          + EE  +  Q
Sbjct: 558 NLIC------SKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 2e-05
 Identities = 51/333 (15%), Positives = 86/333 (25%), Gaps = 113/333 (33%)

Query: 198 HVNYNGIYVPMFVDDLKKFFSTYSSPDF--AGFS-------VGFPY-------------- 234
              Y  I + +F D     F      D   +  S       +                  
Sbjct: 15  QYQYKDI-LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73

Query: 235 --KEAVMKFCDEVHP-----LAQAIAAVNTIIRRPS---------------DGKLIG-YN 271
             +E V KF +EV       L   I       R+PS               D ++   YN
Sbjct: 74  KQEEMVQKFVEEVLRINYKFLMSPIKTEQ---RQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 272 TDCEASITAIEDAIKE-RGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV 330
                    +  A+ E R  KN              ++ G  G+G       K+  A  V
Sbjct: 131 VSRLQPYLKLRQALLELRPAKN-------------VLIDGVLGSG-------KTWVALDV 170

Query: 331 IFDIDFERAKSLASDV----MGAARPFEDIL-NFQPEKGAILANATPLGMHPNTDRVPVS 385
                 +    +   +    +      E +L   Q     I  N T    H +  ++ + 
Sbjct: 171 CLSYKVQCK--MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 386 EE--------TLRDYQ---LVFDAVYTPR---------K----TRLLKDAEAAGAIIVSG 421
                       + Y+   LV   V   +         K    TR  +  +   A   + 
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 422 VEMFLRQAIGQFNLFTGKEAPKEFMREIVLAKF 454
           + +            T  E       + +L K+
Sbjct: 289 ISL-----DHHSMTLTPDEV------KSLLLKY 310

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} Length = 319

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
            AGR   + G   G G  L     ++G +V I DI  +      + +
Sbjct: 6   FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL 52

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} Length = 301

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
             GR  V+ G   G G A A     RGAR+V+ D+D    +   + + G 
Sbjct: 29  FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQ 78

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 Length = 272

 Score = 40.7 bits (96), Expect = 5e-04
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
           + G + ++ GAG G GR  A+      +++V++DI+    +  A+  
Sbjct: 29  VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKC 75

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} Length = 281

 Score = 40.3 bits (95), Expect = 8e-04
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 301 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR 351
             G   +++G AGG G A      + G  VVI D+  E+ K+LA ++   A 
Sbjct: 28  FEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGNRAE 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	454
2o7s_A	523	DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat	100.0
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	100.0
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	100.0
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	100.0
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	100.0
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	100.0
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	100.0
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	100.0
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	100.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	100.0
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	100.0
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	100.0
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	100.0
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	100.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	100.0
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	100.0
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	100.0
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	100.0
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	100.0
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	100.0
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	100.0
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	100.0
2ox1_A	196	3-dehydroquinate dehydratase; (beta-alpha)8 barrel	100.0
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	100.0
3l9c_A	259	3-dehydroquinate dehydratase; AROD, amino-acid bio	100.0
2egz_A	219	3-dehydroquinate dehydratase; aquifex aeolicus VF5	100.0
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	100.0
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	100.0
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	99.75
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.53
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	99.52
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	99.52
3l07_A	285	Bifunctional protein fold; structural genomics, ID	99.51
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	99.49
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	99.46
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.35
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	99.28
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	99.26
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	99.24
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	99.23
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.2
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	99.08
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	99.04
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.85
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.73
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.7
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.63
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.52
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	98.48
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.47
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	98.45
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.33
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	98.29
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.28
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.26
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	98.1
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.09
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.08
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.05
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	97.98
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.94
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.93
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.89
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.88
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	97.87
4fgs_A	273	Probable dehydrogenase protein; PSI-biology, nysgr	97.87
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	97.86
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.84
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	97.83
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.82
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.82
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.82
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.81
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	97.8
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.8
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	97.78
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.77
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.76
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	97.76
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.76
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.76
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.75
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	97.75
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.75
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.72
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.72
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.72
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	97.71
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.71
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.7
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.66
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.66
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.66
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.65
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	97.65
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.64
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.63
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.63
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	97.62
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	97.62
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.62
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.62
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	97.62
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.61
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	97.61
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	97.6
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.59
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.59
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.58
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.58
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.57
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.57
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.57
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	97.56
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	97.56
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.56
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.55
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.54
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.54
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	97.54
4ezb_A	317	Uncharacterized conserved protein; structural geno	97.53
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	97.53
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.53
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.53
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.52
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	97.52
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	97.52
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.51
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.5
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.49
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.49
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	97.49
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.49
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.48
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	97.47
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.47
3n74_A	261	3-ketoacyl-(acyl-carrier-protein) reductase; seatt	97.47
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	97.46
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.46
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	97.45
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	97.45
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.44
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.44
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	97.42
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.42
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	97.41
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.4
4eso_A	255	Putative oxidoreductase; NADP, structural genomics	97.39
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	97.39
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.39
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	97.38
3rwb_A	247	TPLDH, pyridoxal 4-dehydrogenase; short chain dehy	97.38
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	97.38
4e6p_A	259	Probable sorbitol dehydrogenase (L-iditol 2-dehyd;	97.37
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.36
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.36
3ged_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	97.36
3f9i_A	249	3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto	97.35
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.35
4dqx_A	277	Probable oxidoreductase protein; structural genomi	97.34
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	97.34
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	97.32
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.32
3rd5_A	291	Mypaa.01249.C; ssgcid, structural genomics, seattl	97.32
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	97.32
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	97.31
3gvc_A	277	Oxidoreductase, probable short-chain type dehydrog	97.31
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	97.3
3zv4_A	281	CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox	97.29
3grp_A	266	3-oxoacyl-(acyl carrierprotein) reductase; structu	97.28
3op4_A	248	3-oxoacyl-[acyl-carrier protein] reductase; 3-keto	97.28
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	97.27
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	97.27
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.27
3d3w_A	244	L-xylulose reductase; uronate cycle, short-chain d	97.26
1hdc_A	254	3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi	97.25
3ak4_A	263	NADH-dependent quinuclidinone reductase; SDR, (R)-	97.24
4dyv_A	272	Short-chain dehydrogenase/reductase SDR; structura	97.22
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	97.22
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	97.21
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	97.21
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	97.21
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.2
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	97.2
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.2
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	97.19
2wsb_A	254	Galactitol dehydrogenase; oxidoreductase, SDR, ros	97.19
3ppi_A	281	3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de	97.19
3tzq_B	271	Short-chain type dehydrogenase/reductase; ssgcid,	97.18
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.18
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	97.17
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	97.17
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.16
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	97.16
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.16
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.15
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.15
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	97.15
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.15
1cyd_A	244	Carbonyl reductase; short-chain dehydrogenase, oxi	97.15
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	97.14
3l6e_A	235	Oxidoreductase, short-chain dehydrogenase/reducta;	97.13
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	97.13
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.12
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.12
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.12
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	97.12
1nff_A	260	Putative oxidoreductase RV2002; directed evolution	97.12
3guy_A	230	Short-chain dehydrogenase/reductase SDR; structura	97.11
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	97.11
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	97.11
1hxh_A	253	3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b	97.1
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.1
1uls_A	245	Putative 3-oxoacyl-acyl carrier protein reductase;	97.1
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	97.09
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	97.07
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	97.06
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.06
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.06
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.06
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.06
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.05
4h15_A	261	Short chain alcohol dehydrogenase-related dehydro;	97.05
2bgk_A	278	Rhizome secoisolariciresinol dehydrogenase; oxidor	97.05
1spx_A	278	Short-chain reductase family member (5L265); paral	97.05
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	97.04
1zk4_A	251	R-specific alcohol dehydrogenase; short chain redu	97.04
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.04
2cfc_A	250	2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor	97.03
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	97.03
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	96.09
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	97.02
1zmo_A	244	Halohydrin dehalogenase; haloalcohol dehalogenase,	97.02
1yde_A	270	Retinal dehydrogenase/reductase 3; oxidoreductase,	97.02
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	97.01
2pnf_A	248	3-oxoacyl-[acyl-carrier-protein] reductase; short	97.01
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	97.0
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.99
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	96.98
2d1y_A	256	Hypothetical protein TT0321; strucrtural genomics,	96.97
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.97
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	96.97
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	96.95
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.95
1gee_A	261	Glucose 1-dehydrogenase; short-chain dehydrogenase	96.94
1mxh_A	276	Pteridine reductase 2; SDR topology, protein-subst	96.94
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	96.93
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.93
3dii_A	247	Short-chain dehydrogenase/reductase SDR; SCOR, ros	96.92
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.92
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.92
3asu_A	248	Short-chain dehydrogenase/reductase SDR; SDR famil	96.91
1e7w_A	291	Pteridine reductase; dihydrofolate reductase, shor	96.89
3gem_A	260	Short chain dehydrogenase; structural genomics, AP	96.88
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	96.88
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	96.88
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.87
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.87
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.86
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.86
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	96.86
2x9g_A	288	PTR1, pteridine reductase; short chain dehydrogena	96.85
3v2h_A	281	D-beta-hydroxybutyrate dehydrogenase; structural g	96.85
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.85
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	96.85
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	96.84
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	96.84
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.84
3afn_B	258	Carbonyl reductase; alpha/beta/alpha, rossmann-fol	96.84
2gn4_A	344	FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann	96.83
2ehd_A	234	Oxidoreductase, oxidoreductase, short-chain dehydr	96.83
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.83
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	96.82
4had_A	350	Probable oxidoreductase protein; structural genomi	96.82
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	96.82
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	96.82
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	96.82
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.82
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	96.81
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	96.8
2ew8_A	249	(S)-1-phenylethanol dehydrogenase; transferase; 2.	96.8
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	96.79
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.79
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.79
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.78
3rku_A	287	Oxidoreductase YMR226C; substrate fingerprint, sho	96.78
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.78
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	96.78
3m1a_A	281	Putative dehydrogenase; short, PSI, MCSG, structur	96.78
1ja9_A	274	4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p	96.78
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.77
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.76
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	96.76
2ag5_A	246	DHRS6, dehydrogenase/reductase (SDR family) member	96.76
1wma_A	276	Carbonyl reductase [NADPH] 1; oxidoreductase; HET:	96.76
2qhx_A	328	Pteridine reductase 1; oxidoreductase, short-chain	96.75
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	96.75
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	96.74
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	96.74
3vtz_A	269	Glucose 1-dehydrogenase; rossmann fold, oxidoreduc	96.73
2nwq_A	272	Probable short-chain dehydrogenase; oxidoreductase	96.73
3imf_A	257	Short chain dehydrogenase; structural genomics, in	96.72
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	96.72
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	96.72
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	96.71
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	96.71
3p19_A	266	BFPVVD8, putative blue fluorescent protein; rossma	96.7
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	96.7
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	96.69
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	96.68
2z1n_A	260	Dehydrogenase; reductase, SDR, oxidoreductase; 1.8	96.68
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	96.68
1xq6_A	253	Unknown protein; structural genomics, protein stru	96.68
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.67
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	96.67
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.66
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	96.66
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	96.66
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.65
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	96.65
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	96.65
3sc4_A	285	Short chain dehydrogenase (A0QTM2 homolog); ssgcid	96.64
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.64
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.63
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	96.63
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	96.63
3t4x_A	267	Oxidoreductase, short chain dehydrogenase/reducta;	96.63
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	96.62
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.62
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.61
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.61
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	96.61
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	96.61
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	96.61
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	96.6
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.6
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.59
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	96.59
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	96.59
2ph3_A	245	3-oxoacyl-[acyl carrier protein] reductase; TTHA04	96.58
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.58
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	96.58
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	96.57
4gkb_A	258	3-oxoacyl-[acyl-carrier protein] reductase; putati	96.57
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.56
1edo_A	244	Beta-keto acyl carrier protein reductase; nucleoti	96.56
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	96.56
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.56
3a28_C	258	L-2.3-butanediol dehydrogenase; chiral substrate r	96.56
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.56
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	96.55
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.55
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.54
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	96.54
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.53
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	96.53
1sby_A	254	Alcohol dehydrogenase; ternary complex, NAD, trifl	96.53
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.53
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.53
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.52
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.51
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.5
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.5
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	96.5
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	96.49
3rih_A	293	Short chain dehydrogenase or reductase; structural	96.48
2a4k_A	263	3-oxoacyl-[acyl carrier protein] reductase; reduct	96.48
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.48
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.48
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	96.47
3osu_A	246	3-oxoacyl-[acyl-carrier-protein] reductase; struct	96.47
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	96.47
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.47
1sny_A	267	Sniffer CG10964-PA; alpha and beta protein, rossma	96.47
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.46
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	96.46
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	96.46
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	96.45
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	96.45
2gdz_A	267	NAD+-dependent 15-hydroxyprostaglandin dehydrogen;	96.44
3ek2_A	271	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.44
1w6u_A	302	2,4-dienoyl-COA reductase, mitochondrial precursor	96.44
3gdg_A	267	Probable NADP-dependent mannitol dehydrogenase; ro	96.44
1yxm_A	303	Pecra, peroxisomal trans 2-enoyl COA reductase; pe	96.44
2pd6_A	264	Estradiol 17-beta-dehydrogenase 8; short-chain deh	96.43
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	96.43
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.43
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.42
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	96.42
1xq1_A	266	Putative tropinone reducatse; structural genomics,	96.42
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	96.41
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	96.41
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	96.4
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.39
3kvo_A	346	Hydroxysteroid dehydrogenase-like protein 2; HSDL2	96.39
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	96.38
1yo6_A	250	Putative carbonyl reductase sniffer; tyrosine-depe	96.37
1xkq_A	280	Short-chain reductase family member (5D234); parra	96.37
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	96.36
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	96.36
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.36
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.35
3e9n_A	245	Putative short-chain dehydrogenase/reductase; stru	96.34
3cxt_A	291	Dehydrogenase with different specificities; rossma	96.32
4b79_A	242	PA4098, probable short-chain dehydrogenase; oxidor	96.32
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	96.32
1gz6_A	319	Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF	96.31
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	96.3
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.3
1xhl_A	297	Short-chain dehydrogenase/reductase family member	96.3
1oaa_A	259	Sepiapterin reductase; tetrahydrobiopterin, oxidor	96.29
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.29
3kzv_A	254	Uncharacterized oxidoreductase YIR035C; cytoplasmi	96.29
2uvd_A	246	3-oxoacyl-(acyl-carrier-protein) reductase; beta-k	96.29
2ekp_A	239	2-deoxy-D-gluconate 3-dehydrogenase; structural ge	96.28
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.27
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	96.26
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.25
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.25
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.22
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.22
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	96.21
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	96.2
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.19
1o5i_A	249	3-oxoacyl-(acyl carrier protein) reductase; TM1169	96.19
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.17
1zmt_A	254	Haloalcohol dehalogenase HHEC; halohydrin dehaloge	96.17
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.17
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.16
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	96.15
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.15
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	96.14
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.11
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.09
2c07_A	285	3-oxoacyl-(acyl-carrier protein) reductase; oxidor	96.09
3uxy_A	266	Short-chain dehydrogenase/reductase SDR; structura	96.09
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.09
1x1t_A	260	D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S	96.07
3oid_A	258	Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa	96.06
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.06
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	96.05
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	96.04
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	96.03
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.03
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	96.02
4dmm_A	269	3-oxoacyl-[acyl-carrier-protein] reductase; rossma	96.01
2nm0_A	253	Probable 3-oxacyl-(acyl-carrier-protein) reductas;	96.01
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.0
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.99
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.99
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.99
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.99
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	95.98
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.98
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	95.97
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.95
1h5q_A	265	NADP-dependent mannitol dehydrogenase; oxidoreduct	95.94
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.94
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.94
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.93
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.93
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	95.93
3oml_A	613	GH14720P, peroxisomal multifunctional enzyme type	95.92
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.9
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.89
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	95.89
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	95.88
3i4f_A	264	3-oxoacyl-[acyl-carrier protein] reductase; struct	95.88
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.87
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.86
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	95.86
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.85
3e03_A	274	Short chain dehydrogenase; structural genomics, PS	95.85
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.85
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.83
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.83
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.83
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.82
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	95.81
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.8
2yut_A	207	Putative short-chain oxidoreductase; alpha and bet	95.79
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	95.79
3uf0_A	273	Short-chain dehydrogenase/reductase SDR; gluconate	95.79
2hq1_A	247	Glucose/ribitol dehydrogenase; CTH-1438, structura	95.79
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.78
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	95.77
3u9l_A	324	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.77
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.76
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.74
2bd0_A	244	Sepiapterin reductase; oxidoreductase; HET: NAP BI	95.73
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.72
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	95.7
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	95.69
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.69
3qlj_A	322	Short chain dehydrogenase; structural genomics, se	95.68
1sb8_A	352	WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN	95.67
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.64
3ksu_A	262	3-oxoacyl-acyl carrier protein reductase; structur	95.64
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	95.62
3ctm_A	279	Carbonyl reductase; alcohol dehydrogenase, short-c	95.61

>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*

Probab=100.00  E-value=2e-103  Score=834.12  Aligned_cols=452  Identities=51%  Similarity=0.850  Sum_probs=399.3

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGYL   80 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~~   80 (454)
                      |+|||+|+++|||+|++++++|+++|+.++++|++|||||++.+++.++.+...+..++|||+|||||++||++++|.++
T Consensus        60 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yiDvEl~~~~~~~~~~~~~~~~~~kiI~S~H~f~~tp~~~~~~~~  139 (523)
T 2o7s_A           60 PTLFTYRPKWEGGQYEGDENERRDVLRLAMELGADYIDVELQVASEFIKSIDGKKPGKFKVIVSSHNYQNTPSVEDLDGL  139 (523)
T ss_dssp             CEEEECCBGGGTSSBCSCHHHHHHHHHHHHHHTCSEEEEEHHHHHHHHHHTTTCCCTTCEEEEEEECSSCCCCHHHHHHH
T ss_pred             cEEEEecccccCCCCCCCHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHhccCCCEEEEEcccCCCCcCHHHHHHH
Confidence            89999999999999999999999999999999999999999999888877766555699999999999999999999999


Q ss_pred             HHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCCC--CCCCCCChH
Q 012866           81 VSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGT--PVLGLPTVE  158 (454)
Q Consensus        81 ~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~--~ApGQ~~~~  158 (454)
                      +++|.++||||+|||+||++.+|+++|++++++.+.|+|+||||+.|++||+++++|||.+||++++.+  +||||++++
T Consensus       140 ~~~~~~~gaDivKia~~a~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~SRil~~~~gs~lt~~~l~~~~~sApGQ~~~~  219 (523)
T 2o7s_A          140 VARIQQTGADIVKIATTAVDIADVARMFHITSKAQVPTIGLVMGERGLMSRILCSKFGGYLTFGTLDSSKVSAPGQPTIK  219 (523)
T ss_dssp             HHHHHTTTCSEEEEEEECSSGGGHHHHHHHHHHCSSCEEEEEESGGGTHHHHCTTTTTCSEEECBSSTTCCSSTTCCBHH
T ss_pred             HHHHHHhCCCEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEcCCCCchhhhhhhhcCCceeecCCCccccCCCCCCcHH
Confidence            999999999999999999999999999999988899999999999999999999999999999999876  999999999


Q ss_pred             hhhhhccccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHH
Q 012866          159 SLRQTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAV  238 (454)
Q Consensus       159 ~l~~~~~~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v  238 (454)
                      +++++|++.+++++|++|||||+||+||+||.|||++|+++|+|+.|.++++++++++++.++.++|.|+|||||||++|
T Consensus       220 ~l~~~~~~~~~~~~~~~~~viG~pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i  299 (523)
T 2o7s_A          220 DLLDLYNFRRIGPDTKVYGIIGKPVSHSKSPIVHNQAFKSVDFNGVYVHLLVDNLVSFLQAYSSSDFAGFSCTIPHKEAA  299 (523)
T ss_dssp             HHHHTSCGGGCCTTCEEEEEEESSCTTCCHHHHHHHHHHHTTCSEEEEEEECSCHHHHHHHTCSTTEEEEEECTTCHHHH
T ss_pred             HHHHHHhhhhccccceEEEEECCCccCCccHHHHHHHHHHcCCCcEEEeEEcchHHHHHHHHhcCCCCEEEECCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHH
Q 012866          239 MKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRAL  318 (454)
Q Consensus       239 ~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai  318 (454)
                      +++||++++.|+.+||||||+++..+|+|+|+||||.|++.+|+..+...+...........+++++++|+|+||+|+++
T Consensus       300 ~~~ld~~~~~A~~iGAvNti~~~~~~gk~~g~nTD~~G~~~~l~~~~~~~~~~~~~~~~~~~l~~k~vlV~GaGGig~ai  379 (523)
T 2o7s_A          300 LQCCDEVDPLAKSIGAVNTILRRKSDGKLLGYNTDCIGSISAIEDGLRSSGDPSSVPSSSSPLASKTVVVIGAGGAGKAL  379 (523)
T ss_dssp             HHHCSEECHHHHHHTCCSEEEECTTTCCEEEECCHHHHHHHHHHHHC-------------------CEEEECCSHHHHHH
T ss_pred             HHHhcccCHHHHHhCCCeEEEEecCCCeEEEEcCCHHHHHHHHHHhhhhccccccccccccccCCCEEEEECCcHHHHHH
Confidence            99999999999999999999986226899999999999999997653210000000000124678999999999999999


Q ss_pred             HHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE
Q 012866          319 AFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA  398 (454)
Q Consensus       319 ~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~  398 (454)
                      +++|++.|++|+++||+.+++++++++++.....++++.++.....|++||+|++||.|..+..+++...+.....++|+
T Consensus       380 a~~L~~~G~~V~i~~R~~~~a~~la~~~~~~~~~~~dl~~~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dv  459 (523)
T 2o7s_A          380 AYGAKEKGAKVVIANRTYERALELAEAIGGKALSLTDLDNYHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDA  459 (523)
T ss_dssp             HHHHHHHCC-CEEEESSHHHHHHHHHHTTC-CEETTTTTTC--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEEC
T ss_pred             HHHHHHCCCEEEEEECCHHHHHHHHHHcCCceeeHHHhhhccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEE
Confidence            99999999999999999999999999986554455555432234589999999999977544445665666677899999


Q ss_pred             ecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          399 VYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       399 ~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      +|.|..|+|+++|+++||.+++|++||++||+.||++|||.++|.+.|++++.+
T Consensus       460 ny~p~~T~ll~~a~~~G~~~i~Gl~mlv~Qa~~~f~lwtg~~~~~~~~~~~~~~  513 (523)
T 2o7s_A          460 VYTPRITRLLREAEESGAITVSGSEMFVRQAYEQFEIFTGLPAPKELYWQIMSK  513 (523)
T ss_dssp             CCSSSSCHHHHHHHTTTCEEECHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             eeCCccCHHHHHHHHCCCEEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999997654

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=1.7e-72  Score=549.61  Aligned_cols=263  Identities=28%  Similarity=0.432  Sum_probs=243.1

Q ss_pred             CCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCH
Q 012866          170 NADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  247 (454)
Q Consensus       170 ~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  247 (454)
                      +++|++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||||||++++++||++|+
T Consensus         2 s~~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~v~~l~~~~~~G~nVTiP~K~~v~~~ld~ls~   81 (282)
T 3fbt_A            2 SLNTSIYGLIGEKLGHSHSSYIHKLIFEKVGIKGIYNLFEVPKEKLKESVDTFKIIKCGGLNVTIPYKVEVMKELYEISE   81 (282)
T ss_dssp             -CCCEEEEEEESSCCCCHHHHHHHHHHHHHTCCEEEEEEECCGGGHHHHHHHHHHTTCCEEEECTTCTTGGGGGCSEECH
T ss_pred             CCcceEEEEECCCccccchHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHhcCCCCEEEEcCCCHHHHHHHHHhcCH
Confidence            56899999999999999999999999999999999999998  4799999999888999999999999999999999999


Q ss_pred             hHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC
Q 012866          248 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  327 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~  327 (454)
                      .|+.+||||||+++  +|+|+||||||.||+++|++.             +.++++++++|+|+||+||+++++|.+.|+
T Consensus        82 ~A~~iGAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-------------~~~~~~k~vlvlGaGGaaraia~~L~~~G~  146 (282)
T 3fbt_A           82 KARKIGAVNTLKFS--REGISGFNTDYIGFGKMLSKF-------------RVEIKNNICVVLGSGGAARAVLQYLKDNFA  146 (282)
T ss_dssp             HHHHHTCCCEEEEC--SSCEEEECCHHHHHHHHHHHT-------------TCCCTTSEEEEECSSTTHHHHHHHHHHTTC
T ss_pred             HHHHcCCcceEEee--CCEEEeeCCcHHHHHHHHHHc-------------CCCccCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            99999999999988  899999999999999998642             356789999999999999999999999999


Q ss_pred             -eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCH
Q 012866          328 -RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR  406 (454)
Q Consensus       328 -~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~  406 (454)
                       +|+|+|||.++|+++++.+.  ..+++++.+  + ++|+||||||+||.|..++.|++.+++++..+|+|++|+|.+|+
T Consensus       147 ~~v~v~nRt~~ka~~La~~~~--~~~~~~l~~--l-~~DivInaTp~Gm~~~~~~~pi~~~~l~~~~~v~DlvY~P~~T~  221 (282)
T 3fbt_A          147 KDIYVVTRNPEKTSEIYGEFK--VISYDELSN--L-KGDVIINCTPKGMYPKEGESPVDKEVVAKFSSAVDLIYNPVETL  221 (282)
T ss_dssp             SEEEEEESCHHHHHHHCTTSE--EEEHHHHTT--C-CCSEEEECSSTTSTTSTTCCSSCHHHHTTCSEEEESCCSSSSCH
T ss_pred             CEEEEEeCCHHHHHHHHHhcC--cccHHHHHh--c-cCCEEEECCccCccCCCccCCCCHHHcCCCCEEEEEeeCCCCCH
Confidence             99999999999999988764  345566654  3 79999999999999876667888899999999999999999999


Q ss_pred             HHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          407 LLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       407 ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      |+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus       222 ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~~~~  267 (282)
T 3fbt_A          222 FLKYARESGVKAVNGLYMLVSQAAASEEIWNDISIDEIIVDEIFEV  267 (282)
T ss_dssp             HHHHHHHTTCEEECSHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHCcCeEeCcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=100.00  E-value=3.9e-72  Score=554.45  Aligned_cols=266  Identities=31%  Similarity=0.529  Sum_probs=237.8

Q ss_pred             ccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhc
Q 012866          168 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV  245 (454)
Q Consensus       168 ~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~  245 (454)
                      .++++|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||++|+++||++
T Consensus        26 ~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~l  105 (312)
T 3t4e_A           26 DVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEVDNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDEL  105 (312)
T ss_dssp             ----CCEEEEEEESCCTTCSHHHHHHHHHHHHTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSHHHHGGGCSEE
T ss_pred             ccCCCceEEEEECCCccccccHHHHHHHHHHcCCCcEEEeEecCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHhhhc
Confidence            5778899999999999999999999999999999999999998  48999999999899999999999999999999999


Q ss_pred             CHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHC
Q 012866          246 HPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR  325 (454)
Q Consensus       246 ~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~  325 (454)
                      |+.|+.+||||||+++  +|+|+||||||.||+++|++.             +..+++++++|+|+||+||+++++|.+.
T Consensus       106 s~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~l~gk~~lVlGAGGaaraia~~L~~~  170 (312)
T 3t4e_A          106 TPAAKLVGAINTIVND--DGYLRGYNTDGTGHIRAIKES-------------GFDMRGKTMVLLGAGGAATAIGAQAAIE  170 (312)
T ss_dssp             CHHHHHHTCCSEEEEE--TTEEEEECHHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CHHHHHhCceeEEEec--CCEEEEeCCcHHHHHHHHHhc-------------CCCcCCCEEEEECcCHHHHHHHHHHHHc
Confidence            9999999999999987  899999999999999998642             3567899999999999999999999999


Q ss_pred             CC-eEEEEeCC---HHHHHHHHHHhcCC------ccccccc---cccCCCCccEEEECCCCCCCCCCCCCCC--Chhccc
Q 012866          326 GA-RVVIFDID---FERAKSLASDVMGA------ARPFEDI---LNFQPEKGAILANATPLGMHPNTDRVPV--SEETLR  390 (454)
Q Consensus       326 G~-~v~i~nRt---~~~a~~la~~~~~~------~~~~~~l---~~~~~~~~divInat~~g~~p~~~~~~i--~~~~l~  390 (454)
                      |+ +|+|+||+   .+++++++++++..      ..+++++   .+ .+.++|+||||||+||.|.. ..|+  +.+.++
T Consensus       171 G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~-~l~~~DiIINaTp~Gm~~~~-~~~~~~~~~~l~  248 (312)
T 3t4e_A          171 GIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTE-ALASADILTNGTKVGMKPLE-NESLIGDVSLLR  248 (312)
T ss_dssp             TCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-HHHHCSEEEECSSTTSTTST-TCCSCCCGGGSC
T ss_pred             CCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHh-hccCceEEEECCcCCCCCCC-CCcccCCHHHcC
Confidence            99 99999999   99999999887531      2233333   22 23568999999999998753 3344  668899


Q ss_pred             CCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012866          391 DYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV  450 (454)
Q Consensus       391 ~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~  450 (454)
                      +..+|+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++
T Consensus       249 ~~~~v~D~vY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~af~lwtg~~~~~~~~~~~l  308 (312)
T 3t4e_A          249 PELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFPLDYVKQVM  308 (312)
T ss_dssp             TTCEEEECCCSSSSCHHHHHHHHTTCEEECHHHHHHHHHHHHHHHHHSSCCCHHHHHHHT
T ss_pred             CCCEEEEeccCCCCCHHHHHHHHCCCeEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999875

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=100.00  E-value=5.3e-72  Score=548.08  Aligned_cols=265  Identities=31%  Similarity=0.433  Sum_probs=240.8

Q ss_pred             CccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc-------CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhh
Q 012866          172 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV-------DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  244 (454)
Q Consensus       172 ~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~-------~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  244 (454)
                      +|++|||||+||+||+||.|||++|+++|+|+.|.++++       ++++++++.++.++|.|+|||||||++++++||+
T Consensus         3 ~t~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~~~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~lD~   82 (283)
T 3jyo_A            3 DSILLGLIGQGLDLSRTPAMHEAEGLAQGRATVYRRIDTLGSRASGQDLKTLLDAALYLGFNGLNITHPYKQAVLPLLDE   82 (283)
T ss_dssp             CCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEETTSTTTTTCCHHHHHHHHHHTTCCEEEECTTCTTTTGGGSSE
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHcCCCeEEEEEEccccCCCHHHHHHHHHHHhhCCCCEEEECcccHHHHHHHhhh
Confidence            689999999999999999999999999999999999952       5899999999889999999999999999999999


Q ss_pred             cCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH
Q 012866          245 VHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS  324 (454)
Q Consensus       245 ~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~  324 (454)
                      +|+.|+.+||||||++++ +|+|+||||||.||+++|++.             ...+++++++|+|+||+||+++++|.+
T Consensus        83 l~~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~l~~~-------------~~~l~~k~vlVlGaGG~g~aia~~L~~  148 (283)
T 3jyo_A           83 VSEQATQLGAVNTVVIDA-TGHTTGHNTDVSGFGRGMEEG-------------LPNAKLDSVVQVGAGGVGNAVAYALVT  148 (283)
T ss_dssp             ECHHHHHHTCCCEEEECT-TSCEEEECHHHHHHHHHHHHH-------------CTTCCCSEEEEECCSHHHHHHHHHHHH
T ss_pred             CCHHHHHhCcceEEEECC-CCeEEEecCCHHHHHHHHHHh-------------CcCcCCCEEEEECCcHHHHHHHHHHHH
Confidence            999999999999999874 789999999999999998753             245789999999999999999999999


Q ss_pred             CCC-eEEEEeCCHHHHHHHHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEE
Q 012866          325 RGA-RVVIFDIDFERAKSLASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF  396 (454)
Q Consensus       325 ~G~-~v~i~nRt~~~a~~la~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~  396 (454)
                      .|+ +|+|+||+.+++++++++++..       ..+++++.+ .+.++|+||||||+||.|. +..|++.++++++.+|+
T Consensus       149 ~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~-~l~~~DiVInaTp~Gm~~~-~~~pi~~~~l~~~~~v~  226 (283)
T 3jyo_A          149 HGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIED-VIAAADGVVNATPMGMPAH-PGTAFDVSCLTKDHWVG  226 (283)
T ss_dssp             TTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHH-HHHHSSEEEECSSTTSTTS-CSCSSCGGGCCTTCEEE
T ss_pred             CCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHH-HHhcCCEEEECCCCCCCCC-CCCCCCHHHhCCCCEEE
Confidence            999 8999999999999999887532       123335543 3457899999999999986 45678888999999999


Q ss_pred             EEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          397 DAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       397 D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      |++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.+
T Consensus       227 DlvY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~~~~  282 (283)
T 3jyo_A          227 DVVYMPIETELLKAARALGCETLDGTRMAIHQAVDAFRLFTGLEPDVSRMRETFLS  282 (283)
T ss_dssp             ECCCSSSSCHHHHHHHHHTCCEECTHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHT
T ss_pred             EecCCCCCCHHHHHHHHCcCeEeCcHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999998864

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=100.00  E-value=1.5e-71  Score=551.02  Aligned_cols=267  Identities=32%  Similarity=0.571  Sum_probs=243.2

Q ss_pred             ccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhc
Q 012866          168 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV  245 (454)
Q Consensus       168 ~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~  245 (454)
                      +++++|++|||||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++.++|.|+|||||||++++++||++
T Consensus        32 ~i~~~t~~~gviG~Pi~hS~SP~ihn~~f~~~Gl~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVTiP~K~~v~~~lD~l  111 (315)
T 3tnl_A           32 RITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYVYLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKL  111 (315)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCCEEEEEEECCHHHHHHHHHHHHHTTCCEEEECTTSTTTGGGGCSEE
T ss_pred             hcCCcccEEEEECCCccccccHHHHHHHHHHcCCCcEEEEEecCHHHHHHHHHHHhcCCCCEEEEcCCChHHHHHHHHhc
Confidence            57888999999999999999999999999999999999999984  8999999999899999999999999999999999


Q ss_pred             CHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHC
Q 012866          246 HPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR  325 (454)
Q Consensus       246 ~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~  325 (454)
                      |+.|+.+||||||+++  +|+|+||||||.||+++|++.             +..+++|+++|+|+||+||+++++|++.
T Consensus       112 s~~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~~-------------~~~l~gk~~lVlGaGG~g~aia~~L~~~  176 (315)
T 3tnl_A          112 SPAAELVGAVNTVVND--DGVLTGHITDGTGYMRALKEA-------------GHDIIGKKMTICGAGGAATAICIQAALD  176 (315)
T ss_dssp             CHHHHHHTCCSEEEEE--TTEEEEECCHHHHHHHHHHHT-------------TCCCTTSEEEEECCSHHHHHHHHHHHHT
T ss_pred             CHHHHHhCccceEEec--CCEEEEeCCCHHHHHHHHHHc-------------CCCccCCEEEEECCChHHHHHHHHHHHC
Confidence            9999999999999987  899999999999999998641             3568899999999999999999999999


Q ss_pred             CC-eEEEEeCC---HHHHHHHHHHhcC------Ccccccc---ccccCCCCccEEEECCCCCCCCCCCCCCC-ChhcccC
Q 012866          326 GA-RVVIFDID---FERAKSLASDVMG------AARPFED---ILNFQPEKGAILANATPLGMHPNTDRVPV-SEETLRD  391 (454)
Q Consensus       326 G~-~v~i~nRt---~~~a~~la~~~~~------~~~~~~~---l~~~~~~~~divInat~~g~~p~~~~~~i-~~~~l~~  391 (454)
                      |+ +|+|+||+   .+++++++++++.      ...++++   +.+ .+.++|+||||||+||.|..+..|+ +.+++++
T Consensus       177 Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~-~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~l~~  255 (315)
T 3tnl_A          177 GVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRK-EIAESVIFTNATGVGMKPFEGETLLPSADMLRP  255 (315)
T ss_dssp             TCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHH-HHHTCSEEEECSSTTSTTSTTCCSCCCGGGCCT
T ss_pred             CCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHh-hhcCCCEEEECccCCCCCCCCCCCCCcHHHcCC
Confidence            99 99999999   9999999988753      1233433   222 2457899999999999987555667 6788999


Q ss_pred             CcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012866          392 YQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV  450 (454)
Q Consensus       392 ~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~  450 (454)
                      ..+|+|++|+|.+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++
T Consensus       256 ~~~V~DlvY~P~~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~af~lwtG~~~p~~~~~~~l  314 (315)
T 3tnl_A          256 ELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIWTHKEMPVDYIKEIL  314 (315)
T ss_dssp             TCEEEESCCSSSSCHHHHHHHHTTCEEECSHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred             CCEEEEeccCCCCCHHHHHHHHCCCeEeCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999976

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=100.00  E-value=6.9e-70  Score=529.90  Aligned_cols=260  Identities=23%  Similarity=0.363  Sum_probs=237.4

Q ss_pred             cEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhH
Q 012866          174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  251 (454)
Q Consensus       174 ~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  251 (454)
                      .+|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||++++++||++|+.|+.
T Consensus         3 ~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~   82 (272)
T 3pwz_A            3 DRYAVIGRPINHTKSPLIHGLFAQASNQQLEYGAIEGSLDDFEAQVLQFRSEGGKGMNITAPFKLRAFELADRRSERAQL   82 (272)
T ss_dssp             EEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcCCcccHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECchhHHHHHHHHhhCCHHHHH
Confidence            4899999999999999999999999999999999998  58999999998899999999999999999999999999999


Q ss_pred             ccceeEEEEeCCCCeEEEeeccHHHHHHH-HHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eE
Q 012866          252 IAAVNTIIRRPSDGKLIGYNTDCEASITA-IEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RV  329 (454)
Q Consensus       252 igavNTi~~~~~~g~l~G~NTD~~G~~~~-l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v  329 (454)
                      +||||||+++  +|+|+||||||.||+++ |++             .+.++++|+++|+|+||+||+++++|.+.|+ +|
T Consensus        83 iGAvNTv~~~--~g~l~G~NTD~~G~~~~lL~~-------------~~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v  147 (272)
T 3pwz_A           83 ARAANALKFE--DGRIVAENFDGIGLLRDIEEN-------------LGEPLRNRRVLLLGAGGAVRGALLPFLQAGPSEL  147 (272)
T ss_dssp             HTCCSEEEEE--TTEEEEECCHHHHHHHHHHTT-------------SCCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEE
T ss_pred             hCccceEEcc--CCeEEEecCCHHHHHHHHHHH-------------cCCCccCCEEEEECccHHHHHHHHHHHHcCCCEE
Confidence            9999999887  89999999999999998 642             1356789999999999999999999999998 99


Q ss_pred             EEEeCCHHHHHHHHHHhcC---CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCH
Q 012866          330 VIFDIDFERAKSLASDVMG---AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR  406 (454)
Q Consensus       330 ~i~nRt~~~a~~la~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~  406 (454)
                      +|+||+.+++++++++++.   ...+++++..   .++|+||||||+||.+.  ..+++.++++++.+|+|++|+|.+|+
T Consensus       148 ~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~---~~~DivInaTp~gm~~~--~~~i~~~~l~~~~~V~DlvY~P~~T~  222 (272)
T 3pwz_A          148 VIANRDMAKALALRNELDHSRLRISRYEALEG---QSFDIVVNATSASLTAD--LPPLPADVLGEAALAYELAYGKGLTP  222 (272)
T ss_dssp             EEECSCHHHHHHHHHHHCCTTEEEECSGGGTT---CCCSEEEECSSGGGGTC--CCCCCGGGGTTCSEEEESSCSCCSCH
T ss_pred             EEEeCCHHHHHHHHHHhccCCeeEeeHHHhcc---cCCCEEEECCCCCCCCC--CCCCCHHHhCcCCEEEEeecCCCCCH
Confidence            9999999999999999864   2345555532   57899999999999864  23678889999999999999999999


Q ss_pred             HHHHHHHCCCc-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866          407 LLKDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK  453 (454)
Q Consensus       407 ll~~A~~~G~~-~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~~  453 (454)
                      |+++|+++||+ +++|++||++||+.||++|||+++|.+.|++.+.+.
T Consensus       223 ll~~A~~~G~~~~~~Gl~ML~~Qa~~~f~lwtg~~~~~~~~~~~l~~~  270 (272)
T 3pwz_A          223 FLRLAREQGQARLADGVGMLVEQAAEAFAWWRGVRPDTRAVINQLTIP  270 (272)
T ss_dssp             HHHHHHHHSCCEEECTHHHHHHHHHHHHHHHHSCCCCCHHHHHHHCCC
T ss_pred             HHHHHHHCCCCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            99999999998 999999999999999999999999999999987653

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=100.00  E-value=1.8e-69  Score=529.34  Aligned_cols=264  Identities=23%  Similarity=0.369  Sum_probs=234.7

Q ss_pred             cCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866          169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  246 (454)
Q Consensus       169 ~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  246 (454)
                      +..+|++|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||++++++||++|
T Consensus         4 ~~~~m~~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~ld~l~   83 (281)
T 3o8q_A            4 MASQIDQYAVFGNPINHSKSPFIHTLFARQTQQSMIYTAQCVPVDGFTEAAKHFFAQGGRGCNVTVPFKEEAYRFADRLT   83 (281)
T ss_dssp             ----CEEEEEECCSSSCCCHHHHHHHHHHHTTCCEEEEEECCCTTCHHHHHHHHHHTTCCEEEECTTSHHHHHHHCSEEC
T ss_pred             ccccccEEEEECCCCCccCcHHHHHHHHHHcCCCcEEEEeecCHHHHHHHHHHHHhCCCCEEEECCccHHHHHHHHhhcC
Confidence            445688999999999999999999999999999999999998  589999999988899999999999999999999999


Q ss_pred             HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866          247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  326 (454)
Q Consensus       247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G  326 (454)
                      +.|+.+||||||++.+ +|+|+||||||.||+++|++.             +.++++++++|+|+||+|++++++|.+.|
T Consensus        84 ~~A~~iGAVNTv~~~~-~g~l~G~NTD~~G~~~~L~~~-------------~~~l~~k~vlvlGaGg~g~aia~~L~~~G  149 (281)
T 3o8q_A           84 ERARLAGAVNTLKKLD-DGEILGDNTDGEGLVQDLLAQ-------------QVLLKGATILLIGAGGAARGVLKPLLDQQ  149 (281)
T ss_dssp             HHHHHHTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHHHHHHHHTTC
T ss_pred             HHHHhhCeeeEEEEcC-CCcEEEEecHHHHHHHHHHHh-------------CCCccCCEEEEECchHHHHHHHHHHHhcC
Confidence            9999999999999753 899999999999999998641             35678999999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          327 A-RVVIFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       327 ~-~v~i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      + +|+|+||+.+++++++++++.    ...+++++.    .++|+||||||+||.+.  ..+++.++++++.+|+|++|+
T Consensus       150 ~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~----~~aDiIInaTp~gm~~~--~~~l~~~~l~~~~~V~DlvY~  223 (281)
T 3o8q_A          150 PASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLK----QSYDVIINSTSASLDGE--LPAIDPVIFSSRSVCYDMMYG  223 (281)
T ss_dssp             CSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCC----SCEEEEEECSCCCC------CSCCGGGEEEEEEEEESCCC
T ss_pred             CCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhc----CCCCEEEEcCcCCCCCC--CCCCCHHHhCcCCEEEEecCC
Confidence            8 999999999999999998864    223444432    57999999999999764  235778889999999999999


Q ss_pred             CCCCHHHHHHHHCCCc-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          402 PRKTRLLKDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       402 P~~T~ll~~A~~~G~~-~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      |.+|+|+++|+++||+ +++|++||++||+.||++|||+++|.+.|++.+.+
T Consensus       224 P~~T~ll~~A~~~G~~~~~~Gl~Mlv~Qa~~~f~lwtg~~~~~~~~~~~l~~  275 (281)
T 3o8q_A          224 KGYTVFNQWARQHGCAQAIDGLGMLVGQAAESFMLWRGLRPGTKQILRELRK  275 (281)
T ss_dssp             SSCCHHHHHHHHTTCSEEECTHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             CccCHHHHHHHHCCCCEEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999998 99999999999999999999999999998887754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=100.00  E-value=4e-70  Score=528.61  Aligned_cols=252  Identities=25%  Similarity=0.421  Sum_probs=230.9

Q ss_pred             CccEEEEecCCCCcccCHHHHHHHH----HhcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCH
Q 012866          172 DTKVFGLISKPVGHSKGPILHNPTF----RHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHP  247 (454)
Q Consensus       172 ~t~~~~liG~pv~hS~SP~~hn~~f----~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~  247 (454)
                      +|++|||||+||+||+||.|||++|    +++|+|+.|.++++++++++++.++.++|.|+|||||||++++++||++|+
T Consensus         2 k~~~~~viG~Pi~hS~SP~~hn~~f~~~~~~~gl~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~   81 (269)
T 3phh_A            2 KLKSFGVFGNPIKHSKSPLIHNACFLTFQKELRFLGHYHPILLPLESHIKSEFLHLGLSGANVTLPFKERAFQVCDKIKG   81 (269)
T ss_dssp             CEEEEEEEESSCTTCCHHHHHHHHHHHHHHHHSSEEEEEEEECCSSSCHHHHHHHTTEEEEEECTTCHHHHHHHSSEECG
T ss_pred             CceEEEEECCCccccccHHHHHHHHHHHHHHcCCCCEEeeEEhhhHHHHHHHHhhCCCCEEEEccccHHHHHHHHhhcCH
Confidence            5889999999999999999999999    999999999999999999999999889999999999999999999999999


Q ss_pred             hHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC
Q 012866          248 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  327 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~  327 (454)
                      .|+.+||||||+++  +|+|+||||||.||+.+|++ .                .+++++|||+||+||+++++|.+.|.
T Consensus        82 ~A~~iGAVNTi~~~--~g~l~G~NTD~~Gf~~~L~~-~----------------~~k~vlvlGaGGaaraia~~L~~~G~  142 (269)
T 3phh_A           82 IALECGAVNTLVLE--NDELVGYNTDALGFYLSLKQ-K----------------NYQNALILGAGGSAKALACELKKQGL  142 (269)
T ss_dssp             GGGGTTCCCEEEEE--TTEEEEECCHHHHHHHHCC--------------------CCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHhCceeEEEee--CCEEEEecChHHHHHHHHHH-c----------------CCCEEEEECCCHHHHHHHHHHHHCCC
Confidence            99999999999987  89999999999999999753 1                17899999999999999999999999


Q ss_pred             eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh----cccCCcEEEEEecCCC
Q 012866          328 RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE----TLRDYQLVFDAVYTPR  403 (454)
Q Consensus       328 ~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~----~l~~~~~v~D~~y~P~  403 (454)
                      +|+|+||+.+++++++ +++....+++++     .++|+||||||+||.|.   .+++.+    .++++.+|+|++|+| 
T Consensus       143 ~v~V~nRt~~ka~~la-~~~~~~~~~~~l-----~~~DiVInaTp~Gm~~~---~~l~~~~l~~~l~~~~~v~D~vY~P-  212 (269)
T 3phh_A          143 QVSVLNRSSRGLDFFQ-RLGCDCFMEPPK-----SAFDLIINATSASLHNE---LPLNKEVLKGYFKEGKLAYDLAYGF-  212 (269)
T ss_dssp             EEEEECSSCTTHHHHH-HHTCEEESSCCS-----SCCSEEEECCTTCCCCS---CSSCHHHHHHHHHHCSEEEESCCSS-
T ss_pred             EEEEEeCCHHHHHHHH-HCCCeEecHHHh-----ccCCEEEEcccCCCCCC---CCCChHHHHhhCCCCCEEEEeCCCC-
Confidence            9999999999999999 887555555544     26899999999999874   357777    678899999999999 


Q ss_pred             CCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       404 ~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      +|+|+++|+++||++++|++||++||+.||++|||+++|.+.+.+.+..
T Consensus       213 ~T~ll~~A~~~G~~~~~Gl~MLv~Qa~~~f~lw~g~~~~~~~~~~~~~~  261 (269)
T 3phh_A          213 LTPFLSLAKELKTPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRS  261 (269)
T ss_dssp             CCHHHHHHHHTTCCEECSHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHH
T ss_pred             chHHHHHHHHCcCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999966655543

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=100.00  E-value=1.2e-70  Score=535.90  Aligned_cols=260  Identities=29%  Similarity=0.492  Sum_probs=230.8

Q ss_pred             EEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhHc
Q 012866          175 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAI  252 (454)
Q Consensus       175 ~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~i  252 (454)
                      .|||||+||+||+||.|||++|+++|+|+.|.++++  ++++++++.++.++|.|+|||||||++++++||++|+.|+.+
T Consensus         2 ~~~viG~Pi~hS~SP~~hn~~f~~~gl~~~Y~~~~v~~~~l~~~~~~~~~~~~~G~nVTiP~K~~v~~~~d~l~~~A~~i   81 (277)
T 3don_A            2 KFAVIGNPISHSLSPLMHHANFQSLNLENTYEAINVPVNQFQDIKKIISEKSIDGFNVTIPHKERIIPYLDDINEQAKSV   81 (277)
T ss_dssp             EEEEEESSCTTCCHHHHHHHHHHHTTCCCEEEEEECCGGGGGGHHHHHHHTTCSEEEECTTCTTTTGGGCSEECHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCEEEECcCCHHHHHHHhhhCCHHHHHh
Confidence            499999999999999999999999999999999998  489999999998999999999999999999999999999999


Q ss_pred             cceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEE
Q 012866          253 AAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI  331 (454)
Q Consensus       253 gavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i  331 (454)
                      ||||||+++  +|+|+||||||.||+++|++.             +.++++++++|+|+||+|++++++|.+.|+ +|+|
T Consensus        82 GAVNTv~~~--~g~l~G~NTD~~G~~~~L~~~-------------~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v  146 (277)
T 3don_A           82 GAVNTVLVK--DGKWIGYNTDGIGYVNGLKQI-------------YEGIEDAYILILGAGGASKGIANELYKIVRPTLTV  146 (277)
T ss_dssp             TCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-------------STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEE
T ss_pred             CceeEEEec--CCEEEEECChHHHHHHHHHHh-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence            999999998  899999999999999998753             245789999999999999999999999999 9999


Q ss_pred             EeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHH
Q 012866          332 FDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDA  411 (454)
Q Consensus       332 ~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A  411 (454)
                      +||+.++++++++.+.  ...++++.+ .+.++|+||||||+||.|..+. +++.+.++++.+|+|++|+|.+|+|+++|
T Consensus       147 ~~R~~~~a~~la~~~~--~~~~~~~~~-~~~~aDiVInaTp~Gm~~~~~~-~l~~~~l~~~~~V~D~vY~P~~T~ll~~A  222 (277)
T 3don_A          147 ANRTMSRFNNWSLNIN--KINLSHAES-HLDEFDIIINTTPAGMNGNTDS-VISLNRLASHTLVSDIVYNPYKTPILIEA  222 (277)
T ss_dssp             ECSCGGGGTTCCSCCE--EECHHHHHH-TGGGCSEEEECCC-------CC-SSCCTTCCSSCEEEESCCSSSSCHHHHHH
T ss_pred             EeCCHHHHHHHHHhcc--cccHhhHHH-HhcCCCEEEECccCCCCCCCcC-CCCHHHcCCCCEEEEecCCCCCCHHHHHH
Confidence            9999999988875432  234455544 3567999999999999886443 46778899999999999999999999999


Q ss_pred             HHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866          412 EAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK  453 (454)
Q Consensus       412 ~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~~  453 (454)
                      +++||++++|++||++||+.||++|||+++|.+.|++++.++
T Consensus       223 ~~~G~~~~~Gl~MLv~Qa~~~f~lwtg~~~~~~~~~~~l~~~  264 (277)
T 3don_A          223 EQRGNPIYNGLDMFVHQGAESFKIWTNLEPDIKAMKNIVIQK  264 (277)
T ss_dssp             HHTTCCEECTHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHCcCEEeCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988764

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=2.8e-67  Score=511.51  Aligned_cols=260  Identities=28%  Similarity=0.460  Sum_probs=235.5

Q ss_pred             ccCCCccE-EEEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866          168 HINADTKV-FGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  246 (454)
Q Consensus       168 ~~~~~t~~-~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  246 (454)
                      +++++|++ |||||+|  ||+||.|||++|+++|+|+.|.+++.++++++++.++..+|.|+|||||||++|++++|++|
T Consensus         1 ~i~~~t~~~~~viG~P--hS~SP~~hn~~~~~~gl~~~Y~~~~~~~l~~~~~~~~~~~~~G~nVTiP~K~~i~~~~d~~~   78 (271)
T 1npy_A            1 MINKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIH   78 (271)
T ss_dssp             CCCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEEC
T ss_pred             CcCCCceEEEEEECCC--CcccHHHHHHHHHHcCCCcEEEeechhhHHHHHHHhccCCCCeEEECcCCHHHHHHHHHHhh
Confidence            36788999 9999999  99999999999999999999999998899999999988899999999999999999999999


Q ss_pred             HhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCC
Q 012866          247 PLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG  326 (454)
Q Consensus       247 ~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G  326 (454)
                      +.|+.+||||||+++  +|+|+||||||.||..+|++.             +.. .+++++|||+||+||+++++|.+.|
T Consensus        79 ~~A~~iGAvNTi~~~--~g~l~g~NTD~~G~~~~l~~~-------------~~~-~~~~vlvlGaGgaarav~~~L~~~G  142 (271)
T 1npy_A           79 PSAQAIESVNTIVND--NGFLRAYNTDYIAIVKLIEKY-------------HLN-KNAKVIVHGSGGMAKAVVAAFKNSG  142 (271)
T ss_dssp             HHHHTTTCCCEEEEE--TTEEEEECHHHHHHHHHHHHT-------------TCC-TTSCEEEECSSTTHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCceECc--CCEEEeecCCHHHHHHHHHHh-------------CCC-CCCEEEEECCcHHHHHHHHHHHHCC
Confidence            999999999999987  899999999999999998641             122 4689999999999999999999999


Q ss_pred             C-eEEEEeCCHHHHHHHHHHhcCCccccc-cccccCCCCccEEEECCCCCCCCC--CCCCCCChhcccCCcEEEEEecCC
Q 012866          327 A-RVVIFDIDFERAKSLASDVMGAARPFE-DILNFQPEKGAILANATPLGMHPN--TDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       327 ~-~v~i~nRt~~~a~~la~~~~~~~~~~~-~l~~~~~~~~divInat~~g~~p~--~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                      + +|+|+|||.+++++++++++.   .+. ++   ...++|+||||||+||.|.  .+..+++.++++++.+|+|++|+|
T Consensus       143 ~~~i~v~nRt~~ka~~la~~~~~---~~~~~~---~~~~~DivInaTp~gm~~~~~~~~~~~~~~~l~~~~~v~DlvY~P  216 (271)
T 1npy_A          143 FEKLKIYARNVKTGQYLAALYGY---AYINSL---ENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMP  216 (271)
T ss_dssp             CCCEEEECSCHHHHHHHHHHHTC---EEESCC---TTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSS
T ss_pred             CCEEEEEeCCHHHHHHHHHHcCC---ccchhh---hcccCCEEEECCCCCccCccccCCCCCCHHHcCCCCEEEEeecCC
Confidence            9 899999999999999999864   222 12   1356899999999999874  233457777888889999999999


Q ss_pred             CCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 012866          403 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVL  451 (454)
Q Consensus       403 ~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~  451 (454)
                      .+|+|+++|+++||++++|++||++||+.||++|||+++|.+.|++++.
T Consensus       217 ~~T~ll~~A~~~G~~~i~Gl~MLv~Qa~~~f~lw~g~~~~~~~~~~~~~  265 (271)
T 1npy_A          217 VETPFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAEAAA  265 (271)
T ss_dssp             SSCHHHHHHHHTTCEEECHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998874

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=100.00  E-value=3.5e-64  Score=496.94  Aligned_cols=276  Identities=33%  Similarity=0.488  Sum_probs=244.4

Q ss_pred             hhccccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHH
Q 012866          162 QTYKVEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVM  239 (454)
Q Consensus       162 ~~~~~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~  239 (454)
                      .-|++.+++..|++|||||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.+++.++.|+|||||||++|+
T Consensus        12 ~~~~~~~~~~~t~~~~viG~pi~hS~Sp~~hn~~~~~~Gl~~~Y~~~~~~~~~l~~~v~~l~~~~~~G~nVTiP~K~~i~   91 (297)
T 2egg_A           12 SGENLYFQGHMEKVYGLIGFPVEHSLSPLMHNDAFARLGIPARYHLFSVEPGQVGAAIAGVRALGIAGVNVTIPHKLAVI   91 (297)
T ss_dssp             --------CCCCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCTTCHHHHHHHHHHHTCCEEEECTTCTTTTG
T ss_pred             ccccceecCCceeEEEEECCCcccccCHHHHHHHHHHcCcCcEEEEEEcCHHHHHHHHHHHhhCCCCeEEECCcCHHHHH
Confidence            3578889999999999999999999999999999999999999999998  58999999998889999999999999999


Q ss_pred             hhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHH
Q 012866          240 KFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALA  319 (454)
Q Consensus       240 ~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~  319 (454)
                      +++|++++.|+.+||||||+++  +|+|+|+|||+.||..+|++..            ...+++++++|+|+||+|++++
T Consensus        92 ~~ld~~~~~A~~iGavNti~~~--~g~l~g~nTd~~G~~~~l~~~~------------~~~l~~~~vlVlGaGg~g~aia  157 (297)
T 2egg_A           92 PFLDEVDEHARRIGAVNTIINN--DGRLVGYNTDGLGYVQALEEEM------------NITLDGKRILVIGAGGGARGIY  157 (297)
T ss_dssp             GGCSEECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHHT------------TCCCTTCEEEEECCSHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCCeEECc--CCeEeeccCCHHHHHHHHHHhC------------CCCCCCCEEEEECcHHHHHHHH
Confidence            9999999999999999999987  8999999999999999987520            1357789999999999999999


Q ss_pred             HHHHHCCC-eEEEEeCCHHHHHHHHHHhcC---CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEE
Q 012866          320 FGAKSRGA-RVVIFDIDFERAKSLASDVMG---AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLV  395 (454)
Q Consensus       320 ~~L~~~G~-~v~i~nRt~~~a~~la~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v  395 (454)
                      ++|.+.|+ +|+|+||+.+++++++++++.   ...+++++.+ ...++|+||||||.||.|..+..+++.++++++.+|
T Consensus       158 ~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~-~~~~aDivIn~t~~~~~~~~~~~~i~~~~l~~~~~v  236 (297)
T 2egg_A          158 FSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAET-RLAEYDIIINTTSVGMHPRVEVQPLSLERLRPGVIV  236 (297)
T ss_dssp             HHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHH-TGGGCSEEEECSCTTCSSCCSCCSSCCTTCCTTCEE
T ss_pred             HHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHh-hhccCCEEEECCCCCCCCCCCCCCCCHHHcCCCCEE
Confidence            99999999 999999999999999999865   3334444444 456799999999999987644456777789899999


Q ss_pred             EEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          396 FDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       396 ~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      +|++|+|.+|+|+++|+++||++++|++||++||+.||++|||.++|.+.|++++.+
T Consensus       237 ~D~~y~P~~T~ll~~A~~~G~~~v~Gl~MLv~Qa~~af~~w~g~~~~~~~~~~~~~~  293 (297)
T 2egg_A          237 SDIIYNPLETKWLKEAKARGARVQNGVGMLVYQGALAFEKWTGQWPDVNRMKQLVIE  293 (297)
T ss_dssp             EECCCSSSSCHHHHHHHHTTCEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             EEcCCCCCCCHHHHHHHHCcCEEECCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998865

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=100.00  E-value=8.8e-63  Score=481.39  Aligned_cols=262  Identities=21%  Similarity=0.310  Sum_probs=229.1

Q ss_pred             cEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhH
Q 012866          174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  251 (454)
Q Consensus       174 ~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  251 (454)
                      ++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.+++++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~SP~~hn~~~~~~gl~~~y~~~~~~~~~l~~~i~~~~~~~~~G~nVT~P~K~~v~~~ld~~~~~A~~   81 (272)
T 1p77_A            2 DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAKL   81 (272)
T ss_dssp             EEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             cEEEEECCCcccccCHHHHHHHHHHCCcCeEEEEEEcCHHHHHHHHHHHHhCCCCEEEECcCCHHHHHHHHhhcCHHHHH
Confidence            6899999999999999999999999999999999998  58999999998899999999999999999999999999999


Q ss_pred             ccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEE
Q 012866          252 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  331 (454)
Q Consensus       252 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i  331 (454)
                      +||||||++.. +|+|+||||||.||+.+|++.             +..+++++++|+|+||+|++++++|.+.|.+|+|
T Consensus        82 igavNti~~~~-~g~l~g~NTD~~G~~~~L~~~-------------~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v  147 (272)
T 1p77_A           82 AEACNTLKKLD-DGKLYADNTDGIGLVTDLQRL-------------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVL  147 (272)
T ss_dssp             HTCCSEEEECT-TSCEEEECCHHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEE
T ss_pred             hCCceEEEEcc-CCEEEEecCCHHHHHHHHHHh-------------CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence            99999999832 899999999999999998651             2457889999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCC-ccccccccccCC-CCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC-CHHH
Q 012866          332 FDIDFERAKSLASDVMGA-ARPFEDILNFQP-EKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLL  408 (454)
Q Consensus       332 ~nRt~~~a~~la~~~~~~-~~~~~~l~~~~~-~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~-T~ll  408 (454)
                      +||+.++++++++.++.. .+...++++ .. .++|+||||||.||.|..  .+++.+.+.++.+|+|++|+|.+ |+|+
T Consensus       148 ~~R~~~~a~~l~~~~~~~~~~~~~~~~~-~~~~~~DivIn~t~~~~~~~~--~~i~~~~l~~~~~v~D~~y~p~~~t~ll  224 (272)
T 1p77_A          148 ANRTFSKTKELAERFQPYGNIQAVSMDS-IPLQTYDLVINATSAGLSGGT--ASVDAEILKLGSAFYDMQYAKGTDTPFI  224 (272)
T ss_dssp             EESSHHHHHHHHHHHGGGSCEEEEEGGG-CCCSCCSEEEECCCC---------CCCHHHHHHCSCEEESCCCTTSCCHHH
T ss_pred             EECCHHHHHHHHHHccccCCeEEeeHHH-hccCCCCEEEECCCCCCCCCC--CCCCHHHcCCCCEEEEeeCCCCcCCHHH
Confidence            999999999999887541 111112222 11 378999999999997642  24677778888999999999998 9999


Q ss_pred             HHHHHCCCc-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          409 KDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       409 ~~A~~~G~~-~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      ++|+++||+ +++|++||++|++.||++|+|.++|.+.|++++.+
T Consensus       225 ~~a~~~G~~~~v~G~~mLv~Qa~~af~~w~g~~~~~~~~~~~l~~  269 (272)
T 1p77_A          225 ALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYEQLKK  269 (272)
T ss_dssp             HHHHHTTCCCEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCEeeCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            999999999 99999999999999999999999999999998865

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=100.00  E-value=5.6e-64  Score=483.61  Aligned_cols=245  Identities=30%  Similarity=0.456  Sum_probs=219.8

Q ss_pred             EEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhHc
Q 012866          175 VFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQAI  252 (454)
Q Consensus       175 ~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~i  252 (454)
                      +|||||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++ ++|+|+|||||||+++++|||+ |+.|+.+
T Consensus         2 ~~~viG~pi~hS~SP~~hn~~~~~~gl~~~Y~~~~v~~~~l~~~~~~~~-~~~~G~nVT~P~K~~v~~~~d~-~~~A~~i   79 (253)
T 3u62_A            2 KFCIIGYPVRHSISPRLYNEYFKRAGMNHSYGMEEIPPESFDTEIRRIL-EEYDGFNATIPHKERVMRYVEP-SEDAQRI   79 (253)
T ss_dssp             EEEEEESSCTTCSHHHHHHHHHHHHTCCCEEEEEECCGGGHHHHHHHHH-HHCSEEEECTTCTTGGGGGSEE-CHHHHHH
T ss_pred             EEEEECCCccccccHHHHHHHHHHcCCCCEEEeEecCHHHHHHHHHHHh-hCCCceeecCChHHHHHHHhCC-CHHHHHc
Confidence            5999999999999999999999999999999999994  8999999999 9999999999999999999999 9999999


Q ss_pred             cceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEE
Q 012866          253 AAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVI  331 (454)
Q Consensus       253 gavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i  331 (454)
                      ||||||++   +   +||||||.||+++|++               ..+++ +++|||+||+||+++++|.+.|+ +|+|
T Consensus        80 GAvNTi~~---~---~G~NTD~~G~~~~l~~---------------~~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v  137 (253)
T 3u62_A           80 KAVNCVFR---G---KGYNTDWVGVVKSLEG---------------VEVKE-PVVVVGAGGAARAVIYALLQMGVKDIWV  137 (253)
T ss_dssp             TCCCEEET---T---EEECCHHHHHHHHTTT---------------CCCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEE
T ss_pred             CcceEeec---C---EEEcchHHHHHHHHHh---------------cCCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence            99999985   3   9999999999999742               13567 99999999999999999999999 9999


Q ss_pred             EeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHH
Q 012866          332 FDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDA  411 (454)
Q Consensus       332 ~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A  411 (454)
                      +||+.+++++++++++.  ..++++.+ .+.++|+||||||+||.|.  ..+++.++++++.+|+|++|+  .|+|+++|
T Consensus       138 ~nR~~~ka~~la~~~~~--~~~~~~~~-~~~~aDiVInatp~gm~p~--~~~i~~~~l~~~~~V~Divy~--~T~ll~~A  210 (253)
T 3u62_A          138 VNRTIERAKALDFPVKI--FSLDQLDE-VVKKAKSLFNTTSVGMKGE--ELPVSDDSLKNLSLVYDVIYF--DTPLVVKA  210 (253)
T ss_dssp             EESCHHHHHTCCSSCEE--EEGGGHHH-HHHTCSEEEECSSTTTTSC--CCSCCHHHHTTCSEEEECSSS--CCHHHHHH
T ss_pred             EeCCHHHHHHHHHHccc--CCHHHHHh-hhcCCCEEEECCCCCCCCC--CCCCCHHHhCcCCEEEEeeCC--CcHHHHHH
Confidence            99999999999877653  23444443 3457899999999999986  346777889999999999999  89999999


Q ss_pred             HHCCCc-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          412 EAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       412 ~~~G~~-~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      +++||+ +++|++||++||+.||++|||  .+.+.|+++..+
T Consensus       211 ~~~G~~~~~~Gl~MLv~Qa~~af~~wtg--~~~~~~~~~~~~  250 (253)
T 3u62_A          211 RKLGVKHIIKGNLMFYYQAMENLKIWGI--YDEEVFKEVFGE  250 (253)
T ss_dssp             HHHTCSEEECTHHHHHHHHHHHHHHTTC--CCHHHHHHHHGG
T ss_pred             HHCCCcEEECCHHHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence            999999 999999999999999999999  466888886543

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=1.7e-61  Score=472.01  Aligned_cols=261  Identities=25%  Similarity=0.360  Sum_probs=234.2

Q ss_pred             cEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHhH
Q 012866          174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQA  251 (454)
Q Consensus       174 ~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~  251 (454)
                      ++|||||+||+||+||.|||++|+++|+|+.|.++++  +++.++++.+++++|.|+|||||||+++++++|++|+.|+.
T Consensus         2 ~~~~viG~pi~hS~Sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVT~P~K~~~~~~ld~~~~~A~~   81 (271)
T 1nyt_A            2 ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAAL   81 (271)
T ss_dssp             CSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHHH
T ss_pred             CEEEEECCCcccccCHHHHHHHHHHCCCCcEEEEEEcCHHHHHHHHHHHHhCCCCeEEEccCCHHHHHHHHhhcCHHHHH
Confidence            5799999999999999999999999999999999998  58999999998899999999999999999999999999999


Q ss_pred             ccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEE
Q 012866          252 IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVI  331 (454)
Q Consensus       252 igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i  331 (454)
                      +||||||+++. +|+|+|||||+.||+.+|++.             +..+++++++|+|+||+|++++.+|.+.|++|+|
T Consensus        82 igavNti~~~~-~g~l~G~ntD~~G~~~~L~~~-------------~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v  147 (271)
T 1nyt_A           82 AGAVNTLMRLE-DGRLLGDNTDGVGLLSDLERL-------------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTI  147 (271)
T ss_dssp             HTCCSEEEECT-TSCEEEECCHHHHHHHHHHHH-------------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             hCCceEEEEcC-CCeEEEeCCCHHHHHHHHHhc-------------CcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence            99999999832 899999999999999998752             2457889999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHH
Q 012866          332 FDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL  407 (454)
Q Consensus       332 ~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~l  407 (454)
                      +||+.+++++++++++..    ..+++++.  . .++|+||||||.++.+..  .+++.++++++.+|+|++|+|.+|+|
T Consensus       148 ~~R~~~~~~~la~~~~~~~~~~~~~~~~~~--~-~~~DivVn~t~~~~~~~~--~~i~~~~l~~~~~v~D~~y~p~~t~~  222 (271)
T 1nyt_A          148 TNRTVSRAEELAKLFAHTGSIQALSMDELE--G-HEFDLIINATSSGISGDI--PAIPSSLIHPGIYCYDMFYQKGKTPF  222 (271)
T ss_dssp             ECSSHHHHHHHHHHTGGGSSEEECCSGGGT--T-CCCSEEEECCSCGGGTCC--CCCCGGGCCTTCEEEESCCCSSCCHH
T ss_pred             EECCHHHHHHHHHHhhccCCeeEecHHHhc--c-CCCCEEEECCCCCCCCCC--CCCCHHHcCCCCEEEEeccCCcCCHH
Confidence            999999999999887541    11222222  1 478999999999987643  24777788889999999999999999


Q ss_pred             HHHHHHCCCc-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866          408 LKDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK  453 (454)
Q Consensus       408 l~~A~~~G~~-~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~~  453 (454)
                      +++|+++||+ +++|++||++|++.||++|+|.++|.+.|++++.+.
T Consensus       223 ~~~a~~~G~~~~~~G~~mLv~Q~~~af~~w~g~~~~~~~~~~~l~~~  269 (271)
T 1nyt_A          223 LAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE  269 (271)
T ss_dssp             HHHHHHTTCCEEECTHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCeecCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            9999999999 999999999999999999999999999999988653

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=100.00  E-value=2.2e-60  Score=467.92  Aligned_cols=268  Identities=38%  Similarity=0.579  Sum_probs=240.7

Q ss_pred             ccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhc
Q 012866          168 HINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEV  245 (454)
Q Consensus       168 ~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~  245 (454)
                      +++++|++|||||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||++++++||++
T Consensus         6 m~~~~~~~~~viG~pi~hS~Sp~~h~~~~~~~gi~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nVtiP~k~~i~~~~d~~   85 (287)
T 1nvt_A            6 MINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDEI   85 (287)
T ss_dssp             CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSEE
T ss_pred             hhcCCccEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEEcCHHHHHHHHHHHHhCCCCEEEEccCCHHHHHHHHHhc
Confidence            3677899999999999999999999999999999999999998  58999999998779999999999999999999999


Q ss_pred             CHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHC
Q 012866          246 HPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR  325 (454)
Q Consensus       246 ~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~  325 (454)
                      ++.|+.+|||||++++  +|+|+|+|||+.||+.+|++. .            .++++++++|+|+||+|++++.+|.+.
T Consensus        86 ~~~a~~igavnt~~~~--~g~l~g~nTd~~G~~~~L~~~-~------------~~l~~k~vlV~GaGgiG~aia~~L~~~  150 (287)
T 1nvt_A           86 DKDAQLIGAVNTIKIE--DGKAIGYNTDGIGARMALEEE-I------------GRVKDKNIVIYGAGGAARAVAFELAKD  150 (287)
T ss_dssp             CHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-H------------CCCCSCEEEEECCSHHHHHHHHHHTSS
T ss_pred             CHHHHHhCceeeEEee--CCEEEEecCCHHHHHHHHHHh-C------------CCcCCCEEEEECchHHHHHHHHHHHHC
Confidence            9999999999999987  899999999999999998752 1            357889999999999999999999999


Q ss_pred             CCeEEEEeCCHHHHHHHHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCC-ChhcccCCcEEEE
Q 012866          326 GARVVIFDIDFERAKSLASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV-SEETLRDYQLVFD  397 (454)
Q Consensus       326 G~~v~i~nRt~~~a~~la~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i-~~~~l~~~~~v~D  397 (454)
                      | +|+++||+.+++++++++++..       .++..++.+ ...++|+|||+|+.++.|..+..++ +.++++++.+|+|
T Consensus       151 G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~-~~~~~DilVn~ag~~~~~~~~~~~~~~~~~l~~~~~v~D  228 (287)
T 1nvt_A          151 N-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDV-DLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMD  228 (287)
T ss_dssp             S-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTC-CCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEE
T ss_pred             C-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHH-hhCCCCEEEECCCCCCCCCCCCCCCCCHHHcCCCCEEEE
Confidence            9 9999999999999998877431       112223333 4567999999999999876444556 6678888999999


Q ss_pred             EecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          398 AVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       398 ~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      ++|+|..|+|+++|+++||.+++|++||++|++.+|++|+|.++|.+.|++++.+
T Consensus       229 v~y~p~~t~ll~~a~~~G~~~~~Gl~mL~~Qa~~af~~w~g~~~~~~~~~~~~~~  283 (287)
T 1nvt_A          229 LIYNPLETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIID  283 (287)
T ss_dssp             CCCSSSSCHHHHHHHTTTCEEECTHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred             eeeCCccCHHHHHHHHCCCEEeCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999998865

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=100.00  E-value=6.4e-57  Score=440.64  Aligned_cols=266  Identities=29%  Similarity=0.491  Sum_probs=238.1

Q ss_pred             ccccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhh
Q 012866          166 VEHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCD  243 (454)
Q Consensus       166 ~~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d  243 (454)
                      ..+++.+|++||+||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++.++|.|+|||+|||+++++++|
T Consensus         5 ~~~~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~~~~G~nvtiP~k~~i~~~ld   84 (275)
T 2hk9_A            5 HHMINAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFEINPEELKKAFEGFKALKVKGINVTVPFKEEIIPLLD   84 (275)
T ss_dssp             --CCCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEECCGGGHHHHHHHHHHHTCCEEEECTTSTTTTGGGCS
T ss_pred             cccccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEECCHHHHHHHHHHHHhCCCCEEEECccCHHHHHHHHH
Confidence            457899999999999999999999999999999999999999998  489999999988899999999999999999999


Q ss_pred             hcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHH
Q 012866          244 EVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK  323 (454)
Q Consensus       244 ~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~  323 (454)
                      ++++.|+.+||||||+++  +|+|.|+|||+.||+.+|++.             +..+++++++|||+|++|++++..|.
T Consensus        85 ~l~~~A~~~gavnti~~~--~g~~~g~nTd~~G~~~~l~~~-------------~~~~~~~~v~iiGaG~~g~aia~~L~  149 (275)
T 2hk9_A           85 YVEDTAKEIGAVNTVKFE--NGKAYGYNTDWIGFLKSLKSL-------------IPEVKEKSILVLGAGGASRAVIYALV  149 (275)
T ss_dssp             EECHHHHHHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHH-------------CTTGGGSEEEEECCSHHHHHHHHHHH
T ss_pred             HhhHHHHHhCCcceEEee--CCEEEeecCCHHHHHHHHHHh-------------CCCcCCCEEEEECchHHHHHHHHHHH
Confidence            999999999999999987  899999999999999998752             24577899999999999999999999


Q ss_pred             HCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCC
Q 012866          324 SRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPR  403 (454)
Q Consensus       324 ~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~  403 (454)
                      +.|++|+++||+.+++++++++++....  +++.+ .+.++|+||+|||.++.|.... +++.++++++.+|+|++|  .
T Consensus       150 ~~g~~V~v~~r~~~~~~~l~~~~g~~~~--~~~~~-~~~~aDiVi~atp~~~~~~~~~-~i~~~~l~~g~~viDv~~--~  223 (275)
T 2hk9_A          150 KEGAKVFLWNRTKEKAIKLAQKFPLEVV--NSPEE-VIDKVQVIVNTTSVGLKDEDPE-IFNYDLIKKDHVVVDIIY--K  223 (275)
T ss_dssp             HHTCEEEEECSSHHHHHHHTTTSCEEEC--SCGGG-TGGGCSEEEECSSTTSSTTCCC-SSCGGGCCTTSEEEESSS--S
T ss_pred             HcCCEEEEEECCHHHHHHHHHHcCCeee--hhHHh-hhcCCCEEEEeCCCCCCCCCCC-CCCHHHcCCCCEEEEcCC--C
Confidence            9999999999999999999887754322  13333 3467999999999999775333 466677889999999999  6


Q ss_pred             CCHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHh
Q 012866          404 KTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLA  452 (454)
Q Consensus       404 ~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~  452 (454)
                      .|+++++|+++|+++++|++||++|++.+|++|+|.++|.+.|++++.+
T Consensus       224 ~t~ll~~a~~~g~~~v~g~~mlv~q~~~a~~~w~g~~~~~~~~~~~~~~  272 (275)
T 2hk9_A          224 ETKLLKKAKEKGAKLLDGLPMLLWQGIEAFKIWNGCEVPYSVAERSVRD  272 (275)
T ss_dssp             CCHHHHHHHHTTCEEECSHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHCcCEEECCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999998754

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=100.00  E-value=3.6e-53  Score=411.42  Aligned_cols=258  Identities=31%  Similarity=0.471  Sum_probs=232.8

Q ss_pred             ccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHh
Q 012866          173 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  250 (454)
Q Consensus       173 t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  250 (454)
                      +++|||||+|++||+||.|||++|+++|+|+.|.++++  +++.++++.++.. +.|+|||+|||+++++++|++++.|+
T Consensus         1 ~~~~~~~G~pi~hs~sp~~h~~~~~~~g~~~~y~~~~~~~~~l~~~i~~l~~~-~~G~~vt~P~k~~i~~~~~~l~~~a~   79 (263)
T 2d5c_A            1 MLRFAVLGHPVAHSLSPAMHAFALESLGLEGSYEAWDTPLEALPGRLKEVRRA-FRGVNLTLPLKEAALAHLDWVSPEAQ   79 (263)
T ss_dssp             CEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGHHHHHHHHHHH-CSEEEECTTCTTGGGGGCSEECHHHH
T ss_pred             CeEEEEECCCcccccCHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHhcccc-CceEEEcccCHHHHHHHHHHHhHHHH
Confidence            36899999999999999999999999999999999987  4799999988766 99999999999999999999999999


Q ss_pred             HccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE
Q 012866          251 AIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV  330 (454)
Q Consensus       251 ~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~  330 (454)
                      .+|+|||++++  +|++.|+|||+.|++.+|++.             +.++++ +++|||+|++|++++..|.+.|++|+
T Consensus        80 ~~gavn~i~~~--~g~~~g~ntd~~g~~~~l~~~-------------~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~  143 (263)
T 2d5c_A           80 RIGAVNTVLQV--EGRLFGFNTDAPGFLEALKAG-------------GIPLKG-PALVLGAGGAGRAVAFALREAGLEVW  143 (263)
T ss_dssp             HHTCCCEEEEE--TTEEEEECCHHHHHHHHHHHT-------------TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEE
T ss_pred             HhCCCCcEEcc--CCeEEEeCCCHHHHHHHHHHh-------------CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEE
Confidence            99999999986  899999999999999997642             245788 99999999999999999999999999


Q ss_pred             EEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHH
Q 012866          331 IFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKD  410 (454)
Q Consensus       331 i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~  410 (454)
                      ++||+.+++++++++++..   ++++.+ . .++|+||+|||.++.|... .+++.++++++.+|+|++|+|.+|+|+++
T Consensus       144 v~~r~~~~~~~l~~~~~~~---~~~~~~-~-~~~Divi~~tp~~~~~~~~-~~l~~~~l~~g~~viD~~~~p~~t~l~~~  217 (263)
T 2d5c_A          144 VWNRTPQRALALAEEFGLR---AVPLEK-A-REARLLVNATRVGLEDPSA-SPLPAELFPEEGAAVDLVYRPLWTRFLRE  217 (263)
T ss_dssp             EECSSHHHHHHHHHHHTCE---ECCGGG-G-GGCSEEEECSSTTTTCTTC-CSSCGGGSCSSSEEEESCCSSSSCHHHHH
T ss_pred             EEECCHHHHHHHHHHhccc---hhhHhh-c-cCCCEEEEccCCCCCCCCC-CCCCHHHcCCCCEEEEeecCCcccHHHHH
Confidence            9999999999999988754   344444 3 6799999999999876533 34556778889999999999999999999


Q ss_pred             HHHCCCceeccHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866          411 AEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK  453 (454)
Q Consensus       411 A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~~~~  453 (454)
                      ++++|+++++|+.||++|++.+|++|+|.++|.+.|++++.+.
T Consensus       218 a~~~g~~~v~g~~mlv~q~~~a~~~w~g~~~~~~~~~~~~~~~  260 (263)
T 2d5c_A          218 AKAKGLKVQTGLPMLAWQGALAFRLWTGLLPDPSGMEEAARRA  260 (263)
T ss_dssp             HHHTTCEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHCcCEEECcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988664

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=100.00  E-value=2.8e-45  Score=353.40  Aligned_cols=169  Identities=22%  Similarity=0.303  Sum_probs=156.5

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLG   78 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~   78 (454)
                      |+|||+|+++|||+|++++++|.++++.+++.+ +||||||+..+++.++++.. ++++++|||+|||||++||++++|.
T Consensus        80 PiI~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~  159 (258)
T 4h3d_A           80 PLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIV  159 (258)
T ss_dssp             CEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHH
T ss_pred             CEEEEEechhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHH
Confidence            899999999999999999999999999999988 99999999999988888774 5678999999999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc-----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCC
Q 012866           79 YLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLG  153 (454)
Q Consensus        79 ~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApG  153 (454)
                      +++.+|.+.||||+|||+||++.+|+++|++++.+     .+.|+|+||||+.|++||+++++|||++||+++++++|||
T Consensus       160 ~~~~~~~~~gaDIvKia~~~~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~fGS~lTf~~~~~~sAPG  239 (258)
T 4h3d_A          160 SRLCRMQELGADLPKIAVMPQNEKDVLVLLEATNEMFKIYADRPIITMSMSGMGVISRLCGEIFGSALTFGAAKSVSAPG  239 (258)
T ss_dssp             HHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGGGGGGGTCHHHHCBCEEECBCC---CTT
T ss_pred             HHHHHHHHhCCCEEEEEEccCCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCCChHHHHHHHHhCCceEeccCCCCCCCC
Confidence            99999999999999999999999999999998643     4789999999999999999999999999999999999999


Q ss_pred             CCChHhhhhhcccccc
Q 012866          154 LPTVESLRQTYKVEHI  169 (454)
Q Consensus       154 Q~~~~~l~~~~~~~~~  169 (454)
                      |+++++|+++|+..+.
T Consensus       240 Ql~~~el~~~l~lL~~  255 (258)
T 4h3d_A          240 QISFKELNSVLNLLHK  255 (258)
T ss_dssp             CCBHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999986543

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=100.00  E-value=4.2e-45  Score=348.53  Aligned_cols=166  Identities=21%  Similarity=0.318  Sum_probs=156.6

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh-CCcEEEEeccC--cchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDL-GADYVDFELKV--ASNILGKQYS-SHQSGTRFIVSCNLDCETPSEED   76 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~-~~~yvDvE~~~--~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~   76 (454)
                      |+|||+|+++|||+|++++++|+++++.++++ +++|||||++.  +++..+++.. ++++++|||+|||||++||+.++
T Consensus        64 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp~~~e  143 (238)
T 1sfl_A           64 KLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDE  143 (238)
T ss_dssp             EEEEECCBGGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHH
T ss_pred             CEEEEeeccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCcCHHH
Confidence            89999999999999999999999999999998 59999999999  8877777763 56689999999999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCC
Q 012866           77 LGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL  152 (454)
Q Consensus        77 l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~Ap  152 (454)
                      |.+++++|.++||||+|||+||++.+|+++|++++.+    .+.|+|+||||+.|++||+++++|||++||+++++++||
T Consensus       144 l~~~~~~~~~~gaDivKia~~a~~~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~sAP  223 (238)
T 1sfl_A          144 LQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAP  223 (238)
T ss_dssp             HHHHHHHHHTTCCSEEEEEECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCCSST
T ss_pred             HHHHHHHHHHcCCCEEEEEecCCCHHHHHHHHHHHHHHhhcCCCCEEEEECCCCchHHHHHHHHhCCCeeecCCCCCCCC
Confidence            9999999999999999999999999999999999755    578999999999999999999999999999999999999


Q ss_pred             CCCChHhhhhhccc
Q 012866          153 GLPTVESLRQTYKV  166 (454)
Q Consensus       153 GQ~~~~~l~~~~~~  166 (454)
                      ||+++++|+++|+.
T Consensus       224 GQl~~~el~~~l~~  237 (238)
T 1sfl_A          224 GQIDVTDLKAQVTL  237 (238)
T ss_dssp             TCCBHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHh
Confidence            99999999998864

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=100.00  E-value=3.6e-45  Score=355.17  Aligned_cols=167  Identities=24%  Similarity=0.321  Sum_probs=158.7

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLG   78 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~   78 (454)
                      |+|||+|+++|||+|++++++|+++++.++++| +||||||++.+++.++++.. ++++++|||+|||||++||+.++|.
T Consensus       100 PiI~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~~~~~~l~~~a~~~~~kvI~S~Hdf~~tP~~~el~  179 (276)
T 3o1n_A          100 PLLFTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIV  179 (276)
T ss_dssp             CEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHH
T ss_pred             CEEEEEEEhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCHHHHHHHHHHHHhCCCEEEEEeecCCCCcCHHHHH
Confidence            899999999999999999999999999999999 99999999999888888874 4678999999999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc-----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCC
Q 012866           79 YLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLG  153 (454)
Q Consensus        79 ~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApG  153 (454)
                      +++++|.++||||+|||+||++.+|+++|++++.+     .++|+|+||||+.|++||+++++|||++||+++++++|||
T Consensus       180 ~~~~~~~~~GaDIvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~vTf~~l~~~sAPG  259 (276)
T 3o1n_A          180 QRLRKMQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEVFGSAATFGAVKKASAPG  259 (276)
T ss_dssp             HHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGGGTHHHHCHHHHTCCEEECBSSCCSSTT
T ss_pred             HHHHHHHHcCCCEEEEEecCCChHHHHHHHHHHHHHHhcCCCCCEEEEECCCchhhHHHHHHHhCCceEecCCCCCCCCC
Confidence            99999999999999999999999999999999754     5789999999999999999999999999999999999999


Q ss_pred             CCChHhhhhhcccc
Q 012866          154 LPTVESLRQTYKVE  167 (454)
Q Consensus       154 Q~~~~~l~~~~~~~  167 (454)
                      |+++++|+++++..
T Consensus       260 Ql~~~~l~~~l~~l  273 (276)
T 3o1n_A          260 AISVADLRTVLTIL  273 (276)
T ss_dssp             CCBHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHh
Confidence            99999999998754

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=100.00  E-value=1.5e-44  Score=348.16  Aligned_cols=166  Identities=19%  Similarity=0.251  Sum_probs=155.9

Q ss_pred             CEEEEeccCCCCCCC-CCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHH
Q 012866            1 MLCNVSRPKWAGGLY-EGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDL   77 (454)
Q Consensus         1 p~l~T~R~~~eGG~~-~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l   77 (454)
                      |+|||+|+++|||+| ++++++|+++++.++++| +||||||++.++ .++++.. ++++++|||+|||||++||+.++|
T Consensus        80 PiI~T~Rt~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP~~~el  158 (257)
T 2yr1_A           80 PILFTIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE-RIADVRRMTEECSVWLVVSRHYFDGTPRKETL  158 (257)
T ss_dssp             CEEEECCCTTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHH
T ss_pred             CEEEEEeecccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh-hHHHHHHHHHhCCCEEEEEecCCCCCcCHHHH
Confidence            899999999999999 999999999999999999 999999999887 6666653 567899999999999999999999


Q ss_pred             HHHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCC
Q 012866           78 GYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLG  153 (454)
Q Consensus        78 ~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApG  153 (454)
                      .+++++|.++||||+|||+||++.+|+++|++++.+    .++|+|+||||+.|++||+++++|||++||+++++++|||
T Consensus       159 ~~~~~~~~~~gaDivKia~~a~s~~D~l~ll~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~sAPG  238 (257)
T 2yr1_A          159 LADMRQAERYGADIAKVAVMPKSPEDVLVLLQATEEARRELAIPLITMAMGGLGAITRLAGWLFGSAVTFAVGNQSSAPG  238 (257)
T ss_dssp             HHHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHCSSCEEEEECTTTTHHHHHHGGGGTBCEEECBSSSCSSTT
T ss_pred             HHHHHHHHhcCCCEEEEEeccCCHHHHHHHHHHHHHHhccCCCCEEEEECCCCcchHHHHHHHhCCceEecCCCCCCCCC
Confidence            999999999999999999999999999999999754    3789999999999999999999999999999999999999


Q ss_pred             CCChHhhhhhcccc
Q 012866          154 LPTVESLRQTYKVE  167 (454)
Q Consensus       154 Q~~~~~l~~~~~~~  167 (454)
                      |+++++|+++|+..
T Consensus       239 Ql~~~el~~~l~~l  252 (257)
T 2yr1_A          239 QIPIDDVRTVLSIL  252 (257)
T ss_dssp             CCBHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999998754

>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus}

Probab=100.00  E-value=8.6e-44  Score=328.99  Aligned_cols=155  Identities=23%  Similarity=0.357  Sum_probs=147.2

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCC-cEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGA-DYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY   79 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~-~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~   79 (454)
                      |+|||+|+++|||+|++++++|+++++.++++|+ ||||||++.+++.+       ++++|||+|||||++||+++++.+
T Consensus        39 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~~~i-------~~~~kvI~S~Hdf~~tp~~~~l~~  111 (196)
T 2ox1_A           39 EKILTCRRVSDGGKFEGDERERIEKMKRAFDSLNPDYVDLESDLPDSAF-------DFNCRIIESYHNFIRTPDYSELKG  111 (196)
T ss_dssp             EEEEECCBGGGTSSBCSCHHHHHHHHHHHHHHHCCSEEEEETTSCGGGC-------CCSSEEEEEEEESSCCCCHHHHHH
T ss_pred             cEEEEEeecccCCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCCCHhHH-------hCCCEEEEEecCCCCCcCHHHHHH
Confidence            8999999999999999999999999999999997 99999999987652       178999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCChHh
Q 012866           80 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVES  159 (454)
Q Consensus        80 ~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~~~~  159 (454)
                      +++  .++| ||+|||+||++.+|+++|++++.+.+ |+|+||||+.|++||+++++|||++||+++++++||||+++++
T Consensus       112 ~~~--~~~g-DivKia~~a~~~~D~l~ll~~~~~~~-p~I~~~MG~~G~~SRi~~~~~gs~~t~~~~~~~sAPGQl~~~e  187 (196)
T 2ox1_A          112 IVE--GRRG-DLVKIATMGKSKRDVETIVRILTNYD-DVVAFLMGERFSFTRVLAAYLGSPFIYCYVGSPKAPGQISLDD  187 (196)
T ss_dssp             HHH--TCCS-SEEEEEEECCSHHHHHHHHHHHHHCS-SEEEEEESGGGTHHHHHHHHTTCSEEEEESSSCSSTTCCBHHH
T ss_pred             HHH--HHcC-CEEEEEEcCCCHHHHHHHHHHHhhCC-CeEEEEcCCCchhHHHhHhhhCCceEeccCCCCCCCCCCCHHH
Confidence            999  7899 99999999999999999999998775 9999999999999999999999999999998899999999999


Q ss_pred             hhhhccc
Q 012866          160 LRQTYKV  166 (454)
Q Consensus       160 l~~~~~~  166 (454)
                      ++++++.
T Consensus       188 l~~~l~~  194 (196)
T 2ox1_A          188 AREIISR  194 (196)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998875

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=100.00  E-value=6.4e-44  Score=338.46  Aligned_cols=163  Identities=17%  Similarity=0.222  Sum_probs=144.7

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY   79 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~   79 (454)
                      |+|||+|+++|||+|++++++|+++++.++++| ++|||||++.++++++.+   + +.+|||+|||||++||  ++|.+
T Consensus        59 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~~~i~~~---~-~~~kvI~S~Hdf~~tp--~el~~  132 (231)
T 2ocz_A           59 EIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFTHKSVFQEM---L-DFPNLILSYHNFEETP--ENLME  132 (231)
T ss_dssp             EEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEEETTTTGGGGGGG---T-TCSSEEEEEEESSCCC--TTHHH
T ss_pred             cEEEEEeecccCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCHHHHHHh---h-cCCeEEEEecCCCCCH--HHHHH
Confidence            899999999999999999999999999999998 999999999987654333   3 3499999999999999  89999


Q ss_pred             HHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc-----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCC
Q 012866           80 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGL  154 (454)
Q Consensus        80 ~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ  154 (454)
                      ++++|.++||||+|||+||++.+|+++|++++.+     .++|+|+|+||+.|++||+++++|||++||+++++++||||
T Consensus       133 ~~~~~~~~gaDivKia~~a~~~~D~l~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~Tf~~l~~~sAPGQ  212 (231)
T 2ocz_A          133 AFSEMTKLAPRVVKIAVMPQSEQDVLDLMNYTRGFKTLNPEQEFATISMGKLGRLSRFAGDVIGSSWTYVSLDHVSGPGQ  212 (231)
T ss_dssp             HHHHHHHTCCSEEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECHHHHGGGGGCHHHHTCCEEECBC------CC
T ss_pred             HHHHHHHcCCCEEEEEeecCCHHHHHHHHHHHHHHhhccCCCCEEEEEcCCCchhHHHHHHHhCCceEeccCCCCCCCCC
Confidence            9999999999999999999999999999999753     46799999999999999999999999999999999999999


Q ss_pred             CChHhhhhhcccccc
Q 012866          155 PTVESLRQTYKVEHI  169 (454)
Q Consensus       155 ~~~~~l~~~~~~~~~  169 (454)
                      +++++|+++++..+.
T Consensus       213 l~~~el~~~l~~l~~  227 (231)
T 2ocz_A          213 VTLNDMKRIIEVLEM  227 (231)
T ss_dssp             CBHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHhhh
Confidence            999999999886543

>3l9c_A 3-dehydroquinate dehydratase; AROD, amino-acid biosynthesis, aromatic amino acid biosynthe schiff base, lyase; 1.60A {Streptococcus mutans}

Probab=100.00  E-value=2.6e-43  Score=338.23  Aligned_cols=161  Identities=18%  Similarity=0.250  Sum_probs=144.0

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHH-hCCcEEEEeccCcchHHHHhhhcCCCCeEEEEeeccCCCCCCHhHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAED-LGADYVDFELKVASNILGKQYSSHQSGTRFIVSCNLDCETPSEEDLGY   79 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~-~~~~yvDvE~~~~~~~~~~l~~~~~~~~kiI~S~H~f~~tp~~~~l~~   79 (454)
                      |+|||+|+++|||+|++++++|+++|+.+++ +++||||||++.+++.++++.    +.+|||+|||||++||+  +|.+
T Consensus        90 PiI~T~Rt~~EGG~~~~~~~~y~~ll~~~~~~~~~dyIDVEl~~~~~~~~~l~----~~~kiI~S~Hdf~~tp~--el~~  163 (259)
T 3l9c_A           90 EVIFTLRTEKEGGNISLSNEDYLAIIRDIAALYQPDYIDFEYFSYRDVLEEMY----DFSNLILSYHNFEETPE--NLME  163 (259)
T ss_dssp             EEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEEEHHHHGGGGGGGT----TCSSEEEEEEESSCCCT--THHH
T ss_pred             cEEEEEeehhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECcCCHHHHHHHH----hcCeEEEEeccCCCCHH--HHHH
Confidence            8999999999999999999999999999998 789999999999887776663    45699999999999998  8999


Q ss_pred             HHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc-----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCC
Q 012866           80 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGL  154 (454)
Q Consensus        80 ~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ  154 (454)
                      +|++|.++||||+|||+||++.+|+++|++++.+     .+.|+|+||||+.|++||+++++|||++||+++++++||||
T Consensus       164 ~~~~~~~~GaDIvKia~~a~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~G~~SRi~~~~~GS~lTf~~l~~~sAPGQ  243 (259)
T 3l9c_A          164 VFSELTALAPRVVKIAVMPKNEQDVLDLMNYTRGFKTLNPNQEYVTMSMSKLGRISRLAADLIGSSWTFASLEQESAPGQ  243 (259)
T ss_dssp             HHHHHHHTCCSEEEEEECCSSHHHHHHHHHHHHHHHHHCTTSEEEEEECTGGGHHHHHTHHHHTBSEEECBC-------C
T ss_pred             HHHHHHHcCCCEEEEEecCCCHHHHHHHHHHHHHHHhccCCCCEEEEECCCCcccHHHHHHHhCCccccccCCCCCCCCC
Confidence            9999999999999999999999999999999753     46899999999999999999999999999999999999999


Q ss_pred             CChHhhhhhcccc
Q 012866          155 PTVESLRQTYKVE  167 (454)
Q Consensus       155 ~~~~~l~~~~~~~  167 (454)
                      +++++|+++|+..
T Consensus       244 l~~~el~~~l~~l  256 (259)
T 3l9c_A          244 ISLADMRKIKEVL  256 (259)
T ss_dssp             CBHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999998754

>2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A

Probab=100.00  E-value=1.1e-42  Score=327.48  Aligned_cols=161  Identities=24%  Similarity=0.289  Sum_probs=144.5

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhCCcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLGADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLGY   79 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~~   79 (454)
                      |+|||+|+++|||+   ++++|+++++.++++ ++|||||++.++ ..+.+.. .+..++|||+|||||++||+.++|.+
T Consensus        55 PiI~T~R~~~eGG~---~~~~~~~ll~~~~~~-~d~iDvEl~~~~-~~~~l~~~~~~~g~kvI~S~Hdf~~tp~~~el~~  129 (219)
T 2egz_A           55 KTILTIRSPEEGGR---EVKNREELFEELSPL-SDYTDIELSSRG-LLVKLYNITKEAGKKLIISYHNFELTPPNWIIRE  129 (219)
T ss_dssp             EEEEECCCGGGTCC---CCTTHHHHHHHHTTT-SSEEEEETTCHH-HHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHH
T ss_pred             cEEEEEeehhccCC---CHHHHHHHHHHHHhc-CCEEEEEccCCc-cHHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHH
Confidence            89999999999999   778999999999999 999999999851 1222221 23467999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEecccCCHhHHHHHHHHhccCCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCCCCChHh
Q 012866           80 LVSRMQATGADIIKLVFSVNDITEIARIFQLLSHCQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVES  159 (454)
Q Consensus        80 ~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApGQ~~~~~  159 (454)
                      ++++|.++|| |+|||+||++.+|+++|++++++.+.|+|+||||+.|++||+++++|||++||+++++++||||+++++
T Consensus       130 ~~~~~~~~ga-ivKia~~a~~~~D~l~ll~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tf~~l~~~sAPGQl~~~e  208 (219)
T 2egz_A          130 VLREGYRYGG-IPKIAVKANSYEDVARLLCISRQVEGEKILISMGDYGKISRLAGYVFGSVITYCSLEKAFAPGQIPLEE  208 (219)
T ss_dssp             HHHHHHHTTS-EEEEEEECSSHHHHHHHHHHHTTSCSCBEEEEESSGGGGHHHHGGGGTBCEEECBCC---CTTCCBHHH
T ss_pred             HHHHHHHcCC-EEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCcchhHHHHHHHhCCceEecCCCCCCCCCCCCHHH
Confidence            9999999998 999999999999999999999888899999999999999999999999999999999889999999999


Q ss_pred             hhhhcccc
Q 012866          160 LRQTYKVE  167 (454)
Q Consensus       160 l~~~~~~~  167 (454)
                      ++++|+..
T Consensus       209 l~~~l~~l  216 (219)
T 2egz_A          209 MVELRKKF  216 (219)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998754

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=100.00  E-value=1.9e-39  Score=318.69  Aligned_cols=239  Identities=17%  Similarity=0.145  Sum_probs=196.3

Q ss_pred             CCCCcccCHHHHHHHHH-----hcCCCceEEeccc--CCHHHHHHhc-CCCCCCEEEeccCchH-HHHhhhhhcCHhHhH
Q 012866          181 KPVGHSKGPILHNPTFR-----HVNYNGIYVPMFV--DDLKKFFSTY-SSPDFAGFSVGFPYKE-AVMKFCDEVHPLAQA  251 (454)
Q Consensus       181 ~pv~hS~SP~~hn~~f~-----~~gl~~~y~~~~~--~~~~~~~~~l-~~~~~~G~~VT~P~K~-~v~~~~d~~~~~A~~  251 (454)
                      .||.||+||.|||.+|+     ++|+++.|.++++  ++++++++.+ ...+..|+|||.|||. ..+..++++.+.++.
T Consensus         2 ~~i~hs~sp~~h~~~~~~~~~~~~g~~~~y~~~~v~~~~~~~~~~~~~~~~~~~g~~~t~~~~~G~~~~~~~~~~~~~~~   81 (287)
T 1lu9_A            2 KKLLFQFDTDATPSVFDVVVGYDGGADHITGYGNVTPDNVGAYVDGTIYTRGGKEKQSTAIFVGGGDMAAGERVFEAVKK   81 (287)
T ss_dssp             CCEEEEEESSSSCCHHHHHHHHHTTCSEEEEESSCCTTTHHHHHHHHHSSCCGGGGGGEEEEEECSCHHHHHHHHHHHHH
T ss_pred             CceEEEccCCCCCCchhhheeeccCcceEeccCCcCHHHHHhhhcceEEecCccccccceEEEccchHHHHHHHHHHHHH
Confidence            69999999999999999     5999999999998  5899999985 6778999999999966 445555555555554


Q ss_pred             --ccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEc-cchhHHHHHHHHHHCCCe
Q 012866          252 --IAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAG-AGGAGRALAFGAKSRGAR  328 (454)
Q Consensus       252 --igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViG-aGG~arai~~~L~~~G~~  328 (454)
                        +|++||++..  +  +.|+|||+.||+.+|++.+            +..+++|+++|+| +||+|++++..|.+.|++
T Consensus        82 ~~~gavnt~~~~--~--~~G~nTd~~g~~~~l~~~~------------~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~  145 (287)
T 1lu9_A           82 RFFGPFRVSCML--D--SNGSNTTAAAGVALVVKAA------------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAE  145 (287)
T ss_dssp             HCBTTBCCEEEE--C--STTHHHHHHHHHHHHHHHT------------TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCE
T ss_pred             hcCCCeEEEEec--C--CCcCCchHHHHHHHHHHhh------------ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCE
Confidence              5999999876  4  4799999999999987521            1346789999999 899999999999999999


Q ss_pred             EEEEeCCHHHHHHHHHHhcC----Cc--ccc---ccccccCCCCccEEEECCCCCCCCCCCCCCC-ChhcccCCcEEEEE
Q 012866          329 VVIFDIDFERAKSLASDVMG----AA--RPF---EDILNFQPEKGAILANATPLGMHPNTDRVPV-SEETLRDYQLVFDA  398 (454)
Q Consensus       329 v~i~nRt~~~a~~la~~~~~----~~--~~~---~~l~~~~~~~~divInat~~g~~p~~~~~~i-~~~~l~~~~~v~D~  398 (454)
                      |++++|+.++++++++++..    ..  .++   +++.+ .....|+|||++++|+.+.    ++ +.+.+.+...++|+
T Consensus       146 V~i~~R~~~~~~~l~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~DvlVn~ag~g~~~~----~~~~~~~~~~~~~~~dv  220 (287)
T 1lu9_A          146 VVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAE-AVKGAHFVFTAGAIGLELL----PQAAWQNESSIEIVADY  220 (287)
T ss_dssp             EEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHH-HTTTCSEEEECCCTTCCSB----CHHHHTTCTTCCEEEEC
T ss_pred             EEEEECCHHHHHHHHHHHHhcCCcEEEEecCCCHHHHHH-HHHhCCEEEECCCccccCC----ChhHcCchHHHHHHHHh
Confidence            99999999999999877632    11  122   12223 3456899999999987542    22 22234667899999


Q ss_pred             ecCCCC----CHHHHHH------HHCCCceeccHHHHHHHHHHHHHHhcCCCC
Q 012866          399 VYTPRK----TRLLKDA------EAAGAIIVSGVEMFLRQAIGQFNLFTGKEA  441 (454)
Q Consensus       399 ~y~P~~----T~ll~~A------~~~G~~~~~Gl~mlv~Qa~~~f~lw~g~~~  441 (454)
                      +|.|..    |+|+++|      +++|+.+++|++||++||+.+ ++|+|.++
T Consensus       221 n~~~~~~i~~t~ll~~a~~~~~~~~~G~~~v~gl~ml~~qa~~a-~~~~~~~~  272 (287)
T 1lu9_A          221 NAQPPLGIGGIDATDKGKEYGGKRAFGALGIGGLKLKLHRACIA-KLFESSEG  272 (287)
T ss_dssp             CCSSSCSBTTSCTTCEEEEETTEEEECHHHHHHHHHHHHHHHHH-HHTSCSCC
T ss_pred             hhhhhHHhhcchHHhhccccCCCccccceeECchHHHHHHHHHH-HHhhCCCc
Confidence            999999    9999999      999999999999999999999 99999876

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=100.00  E-value=1.7e-38  Score=325.50  Aligned_cols=237  Identities=17%  Similarity=0.218  Sum_probs=190.0

Q ss_pred             ccccCCCccEEE--EecCCCCcccCHHHHHHH--HHhc-CCCceEEecccC---CHHHHHHhcCCCCCCEEEe---ccCc
Q 012866          166 VEHINADTKVFG--LISKPVGHSKGPILHNPT--FRHV-NYNGIYVPMFVD---DLKKFFSTYSSPDFAGFSV---GFPY  234 (454)
Q Consensus       166 ~~~~~~~t~~~~--liG~pv~hS~SP~~hn~~--f~~~-gl~~~y~~~~~~---~~~~~~~~l~~~~~~G~~V---T~P~  234 (454)
                      ..-++..|+++|  ++|.   ||.||.|||++  |+++ |+|+.|++++++   +|.++++.++ ++|.|+||   |+||
T Consensus        66 v~vvtdgt~ilGlG~iG~---hS~sPvmh~ka~lf~~~gGid~~yi~ldv~d~de~~~~v~~l~-~~f~GinvED~T~P~  141 (439)
T 2dvm_A           66 VAVVSDGSRILGLGNIGP---LAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVKAIA-PTFGGINLEDIASPK  141 (439)
T ss_dssp             EEEEECSTTBTTTBCCCH---HHHHHHHHHHHHHHHHHHCCEEEEEECSCCSHHHHHHHHHHTG-GGCSEEEECSCCTTH
T ss_pred             EEEEECCCeEecccceec---cccCHHHHHHHHHHHHhCCCCCeeeeeecCCHHHHHHHHHHhC-ccCcEEEEEeCCCch
Confidence            334566678877  8998   99999999966  9999 899999999994   5666666666 89999999   9999


Q ss_pred             hHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchh
Q 012866          235 KEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA  314 (454)
Q Consensus       235 K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~  314 (454)
                      |+++++++|+         +|||+++.+ |++++| |||+.||+++|+..             +..+++++++|+||||+
T Consensus       142 k~~il~~l~~---------avNt~vf~d-D~~gtg-ntd~aG~~~AL~~~-------------g~~l~~~rvlvlGAGgA  197 (439)
T 2dvm_A          142 CFYILERLRE---------ELDIPVFHD-DQQGTA-AVVLAGLLNALKVV-------------GKKISEITLALFGAGAA  197 (439)
T ss_dssp             HHHHHHHHHH---------HCSSCEEEH-HHHHHH-HHHHHHHHHHHHHH-------------TCCTTTCCEEEECCSHH
T ss_pred             HHHHHHHHHH---------hcCEEEEeC-CCcEEe-ehHHHHHHHHHHHh-------------CCCccCCEEEEECccHH
Confidence            9999999986         899999853 788999 99999999998752             24578899999999999


Q ss_pred             HHHHHHHHHHCCC---eEEEEe----CC--HHHHHH---HH---HHhcCCc---cccccccccCCCCccEEEECCCC--C
Q 012866          315 GRALAFGAKSRGA---RVVIFD----ID--FERAKS---LA---SDVMGAA---RPFEDILNFQPEKGAILANATPL--G  374 (454)
Q Consensus       315 arai~~~L~~~G~---~v~i~n----Rt--~~~a~~---la---~~~~~~~---~~~~~l~~~~~~~~divInat~~--g  374 (454)
                      |+++++.|.+.|+   +|+|+|    |+  .+++++   +.   ..+....   ..+.++.+ .+.++|++||+||+  |
T Consensus       198 g~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e-~l~~aDVlInaT~~~~G  276 (439)
T 2dvm_A          198 GFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQE-ALKDADVLISFTRPGPG  276 (439)
T ss_dssp             HHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHH-HHTTCSEEEECSCCCSS
T ss_pred             HHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHH-HhccCCEEEEcCCCccC
Confidence            9999999999998   799999    98  444333   32   2222111   12334443 34678999999999  8


Q ss_pred             CCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCcee-ccHHHHHHHHHHHHHHhcC
Q 012866          375 MHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV-SGVEMFLRQAIGQFNLFTG  438 (454)
Q Consensus       375 ~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~-~Gl~mlv~Qa~~~f~lw~g  438 (454)
                      |.+.   .  ..+.+.+..+|||+ |+|..|+++++|++.|+.++ +|++|+++|+..+| .|.|
T Consensus       277 ~~~~---e--~v~~m~~~~iVfDL-ynP~~t~~~~~A~~~G~~ivatG~~ml~~Q~nn~~-~FPG  334 (439)
T 2dvm_A          277 VIKP---Q--WIEKMNEDAIVFPL-ANPVPEILPEEAKKAGARIVATGRSDYPNQINNLL-GFPG  334 (439)
T ss_dssp             SSCH---H--HHTTSCTTCEEEEC-CSSSCSSCHHHHHHHTCSEECBSCSSSSSBCCGGG-THHH
T ss_pred             CCCh---H--HHHhcCCCCEEEEC-CCCCCcchHHHHHHcCCeEEcCCCchhHHHHHHHh-cccC
Confidence            8652   1  12346677899999 99999999999999999988 99999999998765 4544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=99.75  E-value=8.1e-20  Score=184.66  Aligned_cols=187  Identities=16%  Similarity=0.167  Sum_probs=143.8

Q ss_pred             cccCHHHHHHHHHhcCC-CceEEecccCCHHHHHHhcCCCCCCEEEe-ccCchHHHHhhhhhcCHhHhHc----cceeEE
Q 012866          185 HSKGPILHNPTFRHVNY-NGIYVPMFVDDLKKFFSTYSSPDFAGFSV-GFPYKEAVMKFCDEVHPLAQAI----AAVNTI  258 (454)
Q Consensus       185 hS~SP~~hn~~f~~~gl-~~~y~~~~~~~~~~~~~~l~~~~~~G~~V-T~P~K~~v~~~~d~~~~~A~~i----gavNTi  258 (454)
                      +++||.+||..|.+.|+ ++.|..+.++  .++++.++..++.|+|+ |+|||+.+++++|.+++.|..+    ||+||+
T Consensus        72 ~vksP~~~~~~~~~~g~~~~~y~~~~~~--~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~nt~  149 (361)
T 1pjc_A           72 KVKEPLPAEYDLMQKDQLLFTYLHLAAA--RELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARFLE  149 (361)
T ss_dssp             CSSCCCGGGGGGCCTTCEEEECCCGGGC--HHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHHTS
T ss_pred             EECCCCHHHHHhhcCCCEEEEEeccccC--HHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHHHh
Confidence            78899999999999997 8999988875  24566666679999999 9999999999999999999999    999999


Q ss_pred             EEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          259 IRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       259 ~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      .+.  +|+  |+..      ..    +             ..+++++|+|+|+|++|++++..++.+|++|++++|+.++
T Consensus       150 ~~~--~g~--G~~l------~~----l-------------~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r  202 (361)
T 1pjc_A          150 RQQ--GGR--GVLL------GG----V-------------PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVER  202 (361)
T ss_dssp             GGG--TSC--CCCT------TC----B-------------TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             hcc--CCC--ceec------cC----C-------------CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence            776  564  3331      11    1             1255689999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCc--c--ccccccccCCCCccEEEECCCCCCCCCCCCCCCCh---hcccCCcEEEEEecCCC
Q 012866          339 AKSLASDVMGAA--R--PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSE---ETLRDYQLVFDAVYTPR  403 (454)
Q Consensus       339 a~~la~~~~~~~--~--~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~---~~l~~~~~v~D~~y~P~  403 (454)
                      ++.+.+.++...  .  +.+++.+ .+.++|+||||++.++.+.  +..+..   +.++++.+++|+.|.|.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DvVI~~~~~~~~~~--~~li~~~~~~~~~~g~~ivdv~~~~g  271 (361)
T 1pjc_A          203 LSYLETLFGSRVELLYSNSAEIET-AVAEADLLIGAVLVPGRRA--PILVPASLVEQMRTGSVIVDVAVDQG  271 (361)
T ss_dssp             HHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEEEECCCCTTSSC--CCCBCHHHHTTSCTTCEEEETTCTTC
T ss_pred             HHHHHHhhCceeEeeeCCHHHHHH-HHcCCCEEEECCCcCCCCC--CeecCHHHHhhCCCCCEEEEEecCCC
Confidence            988876654321  1  1123322 2346899999998765321  112232   34678899999999864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.53  E-value=7e-15  Score=150.62  Aligned_cols=140  Identities=20%  Similarity=0.339  Sum_probs=112.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      +.+++++|+|+|++|++++..|...|+ +|+++||+.+++++++++++...++++++.+ .+.++|+||+||+.++..  
T Consensus       165 l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~-~l~~aDvVi~at~~~~~~--  241 (404)
T 1gpj_A          165 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVD-HLARSDVVVSATAAPHPV--  241 (404)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHH-HHHTCSEEEECCSSSSCC--
T ss_pred             ccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHH-HhcCCCEEEEccCCCCce--
Confidence            578999999999999999999999999 9999999999999999999875545555544 345789999999875421  


Q ss_pred             CCCCCChh---c--c----cCCcEEEEEecCCCC-C------------------HHHHHHHHCCCceeccHHHHHHHHHH
Q 012866          380 DRVPVSEE---T--L----RDYQLVFDAVYTPRK-T------------------RLLKDAEAAGAIIVSGVEMFLRQAIG  431 (454)
Q Consensus       380 ~~~~i~~~---~--l----~~~~~v~D~~y~P~~-T------------------~ll~~A~~~G~~~~~Gl~mlv~Qa~~  431 (454)
                          +..+   .  +    .+..+++|+.+ |.+ +                  .+.+++++.|+...+|++|+++|++.
T Consensus       242 ----~~~~~l~~~~lk~r~~~~~v~vdia~-P~~i~~~l~~l~~v~l~d~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~  316 (404)
T 1gpj_A          242 ----IHVDDVREALRKRDRRSPILIIDIAN-PRDVEEGVENIEDVEVRTIDDLRVIARENLERRRKEIPKVEKLIEEELS  316 (404)
T ss_dssp             ----BCHHHHHHHHHHCSSCCCEEEEECCS-SCSBCTTGGGSTTEEEEEHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             ----ecHHHHHHHHHhccCCCCEEEEEccC-CCCCCccccccCCeEEEeHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2222   2  2    24578999988 764 4                  46677778899999999999999999


Q ss_pred             HHHHhcCCCCCHHHHHH
Q 012866          432 QFNLFTGKEAPKEFMRE  448 (454)
Q Consensus       432 ~f~lw~g~~~p~~~~~~  448 (454)
                      +|+.|++...+...|+.
T Consensus       317 ~f~~w~~~~~~~~~I~~  333 (404)
T 1gpj_A          317 TVEEELEKLKERRLVAD  333 (404)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccHHHHHH
Confidence            99999988766665543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.52  E-value=1.7e-16  Score=165.08  Aligned_cols=141  Identities=16%  Similarity=0.237  Sum_probs=109.6

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCCc--ccc---ccccccCCCCccEEEECC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMGAA--RPF---EDILNFQPEKGAILANAT  371 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~-G~~v~i~nRt~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~divInat  371 (454)
                      +..+.+++|+|+|+|++|++++.+|.+. |++|+|++|+.++++++++..+...  .++   +++.+ .+.++|+||||+
T Consensus        18 ~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~-~l~~~DvVIn~t   96 (467)
T 2axq_A           18 EGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDK-VLADNDVVISLI   96 (467)
T ss_dssp             -----CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHH-HHHTSSEEEECS
T ss_pred             ccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHH-HHcCCCEEEECC
Confidence            3557789999999999999999999998 5599999999999999987633221  122   22332 245789999999


Q ss_pred             CCCCCCCCCCCCCChhcccCCcEEEEEec-CCCCCHHHHHHHHCCCceeccHHH-----------HHHHH------HHHH
Q 012866          372 PLGMHPNTDRVPVSEETLRDYQLVFDAVY-TPRKTRLLKDAEAAGAIIVSGVEM-----------FLRQA------IGQF  433 (454)
Q Consensus       372 ~~g~~p~~~~~~i~~~~l~~~~~v~D~~y-~P~~T~ll~~A~~~G~~~~~Gl~m-----------lv~Qa------~~~f  433 (454)
                      |.++.+     .+...++..+..++|++| .|..|+|+++|+++|+.+++|++|           +++|+      +.+|
T Consensus        97 p~~~~~-----~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv~~i~g~G~~PG~~~~~a~~li~q~~~~g~~~~s~  171 (467)
T 2axq_A           97 PYTFHP-----NVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGITVMNEIGLDPGIDHLYAVKTIDEVHRAGGKLKSF  171 (467)
T ss_dssp             CGGGHH-----HHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTCEEECSCBBTTBHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             chhhhH-----HHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCCEEEecCCcCccchHHHHHHHHHHHHhccCcceEE
Confidence            987643     244566777888999999 677899999999999999999999           99999      6689


Q ss_pred             HHhcCCCCCHH
Q 012866          434 NLFTGKEAPKE  444 (454)
Q Consensus       434 ~lw~g~~~p~~  444 (454)
                      ++|+|..+|.+
T Consensus       172 ~~wtG~~p~~~  182 (467)
T 2axq_A          172 LSYCGGLPAPE  182 (467)
T ss_dssp             EEEEEEEECGG
T ss_pred             EEEecccCCcc
Confidence            99999866554

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=99.52  E-value=6.5e-14  Score=134.89  Aligned_cols=221  Identities=16%  Similarity=0.179  Sum_probs=157.8

Q ss_pred             EEEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchH-----HHHhhhh
Q 012866          175 VFGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKE-----AVMKFCD  243 (454)
Q Consensus       175 ~~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~-----~v~~~~d  243 (454)
                      -.-++| +|-+++.- ..-.++++++|++..+..++-    +++.+.++.| .++++.|+.|.+|++.     .++..+|
T Consensus        39 avilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~  117 (286)
T 4a5o_A           39 AVILVGTDPASQVYV-AHKRKDCEEVGFLSQAYDLPAETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIH  117 (286)
T ss_dssp             EEEEESCCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSC
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCC
Confidence            355667 45554421 233568899999999998854    3677777777 5789999999999876     6666664


Q ss_pred             hcCHhHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHHH
Q 012866          244 EVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFGA  322 (454)
Q Consensus       244 ~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~L  322 (454)
                      - +..+.-+..+|+-..-  .|.-...+++..|++..|++.             +.+++||+++|+|.|+ +|+.++..|
T Consensus       118 p-~KDVDG~~~~N~g~l~--~g~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVvGrs~iVG~plA~lL  181 (286)
T 4a5o_A          118 P-DKDVDGFHPYNIGRLA--QRMPLLRPCTPKGIMTLLAST-------------GADLYGMDAVVVGASNIVGRPMALEL  181 (286)
T ss_dssp             G-GGCTTCCSHHHHHHHH--TTCCSSCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECTTSTTHHHHHHHH
T ss_pred             c-ccccccCChhhhHHHh--cCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHHH
Confidence            3 4555666777764322  233345789999999987752             3678999999999988 799999999


Q ss_pred             HHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          323 KSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       323 ~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                      ...|+.|++++|....                 +.+ ...++|+||+|++.   |.    .+..++++++.+|+|+.++|
T Consensus       182 ~~~gAtVtv~hs~T~~-----------------L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDvgi~~  236 (286)
T 4a5o_A          182 LLGGCTVTVTHRFTRD-----------------LAD-HVSRADLVVVAAGK---PG----LVKGEWIKEGAIVIDVGINR  236 (286)
T ss_dssp             HHTTCEEEEECTTCSC-----------------HHH-HHHTCSEEEECCCC---TT----CBCGGGSCTTCEEEECCSCS
T ss_pred             HHCCCeEEEEeCCCcC-----------------HHH-HhccCCEEEECCCC---CC----CCCHHHcCCCeEEEEecccc
Confidence            9999999999874221                 222 23568999999974   32    47889999999999999998


Q ss_pred             C-------CCHHHHHHHHCCCc--eeccHH-----HHHHHHHHHHHHhc
Q 012866          403 R-------KTRLLKDAEAAGAI--IVSGVE-----MFLRQAIGQFNLFT  437 (454)
Q Consensus       403 ~-------~T~ll~~A~~~G~~--~~~Gl~-----mlv~Qa~~~f~lw~  437 (454)
                      .       +..|-...+..++.  +-.|.+     ||+.+.+.+.+.|.
T Consensus       237 ~~~gkl~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~aa~~~~  285 (286)
T 4a5o_A          237 QADGRLVGDVEYEVAAQRASWITPVPGGVGPMTRACLLENTLHAAEHLH  285 (286)
T ss_dssp             SCCCCSSCSBCHHHHHHHCSEECCSSCSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccCCcccCccHHHHHhhceEeCCCCCcchHHHHHHHHHHHHHHHHHhc
Confidence            3       34454444445543  234554     88888887777664

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=99.51  E-value=1.6e-14  Score=139.20  Aligned_cols=220  Identities=14%  Similarity=0.136  Sum_probs=157.7

Q ss_pred             EEEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCch-----HHHHhhhh
Q 012866          175 VFGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCD  243 (454)
Q Consensus       175 ~~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d  243 (454)
                      ..-++| +|-+++.- ..-.++++++|++..+..++-    +++.+.++.| .++++.|+.|.+|+.     +.++..+|
T Consensus        38 avilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~  116 (285)
T 3l07_A           38 VAIIVGNDPASKTYV-ASKEKACAQVGIDSQVITLPEHTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIK  116 (285)
T ss_dssp             EEEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSC
T ss_pred             EEEEECCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCC
Confidence            345567 44444322 233568899999999998854    3677777777 578999999999987     67777775


Q ss_pred             hcCHhHhHccceeEEEEeCCCCe-EEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866          244 EVHPLAQAIAAVNTIIRRPSDGK-LIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG  321 (454)
Q Consensus       244 ~~~~~A~~igavNTi~~~~~~g~-l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~  321 (454)
                      - +..+.-+..+|+-...  .|. -...+++..|++..|++.             +.+++||+++|+|+|+ +|+.++..
T Consensus       117 p-~KDVDG~~~~N~G~l~--~g~~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVIG~s~iVG~p~A~l  180 (285)
T 3l07_A          117 P-EKDVDGFHPTNVGRLQ--LRDKKCLESCTPKGIMTMLREY-------------GIKTEGAYAVVVGASNVVGKPVSQL  180 (285)
T ss_dssp             G-GGBTTCCSHHHHHHHH--HTCTTCCCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             c-ccccccCChhheeehh--cCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchhHHHHHHH
Confidence            4 5566667778875322  122 345789999999987652             3678999999999998 69999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      |..+|+.|++++|+..                 ++.+ ...++|+||+|++.   |.    .+..++++++.+|+|+.++
T Consensus       181 L~~~gAtVtv~hs~t~-----------------~L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDvgi~  235 (285)
T 3l07_A          181 LLNAKATVTTCHRFTT-----------------DLKS-HTTKADILIVAVGK---PN----FITADMVKEGAVVIDVGIN  235 (285)
T ss_dssp             HHHTTCEEEEECTTCS-----------------SHHH-HHTTCSEEEECCCC---TT----CBCGGGSCTTCEEEECCCE
T ss_pred             HHHCCCeEEEEeCCch-----------------hHHH-hcccCCEEEECCCC---CC----CCCHHHcCCCcEEEEeccc
Confidence            9999999999997522                 2222 34678999999974   32    4788999999999999998


Q ss_pred             C------CCCHHHHHHHHCCCc--eeccHH-----HHHHHHHHHHHHh
Q 012866          402 P------RKTRLLKDAEAAGAI--IVSGVE-----MFLRQAIGQFNLF  436 (454)
Q Consensus       402 P------~~T~ll~~A~~~G~~--~~~Gl~-----mlv~Qa~~~f~lw  436 (454)
                      |      .+..|-...+..++.  +-.|.+     ||+.+.+.+.+.|
T Consensus       236 ~~~g~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~  283 (285)
T 3l07_A          236 HVDGKIVGDVDFAAVKDKVAAITPVPGGVGPMTITELLYNTFQCAQEL  283 (285)
T ss_dssp             EETTEEECSBCHHHHTTTCSEECCSSSSSHHHHHHHHHHHHHHHHHHT
T ss_pred             CcCCceecCccHHHHHhhheEeCCCCCcChHHHHHHHHHHHHHHHHHh
Confidence            8      345553333334432  223444     8888877776654

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=99.49  E-value=2.6e-14  Score=137.77  Aligned_cols=220  Identities=14%  Similarity=0.168  Sum_probs=154.9

Q ss_pred             EEEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCch-----HHHHhhhh
Q 012866          175 VFGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCD  243 (454)
Q Consensus       175 ~~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d  243 (454)
                      -.-++| +|-+++.- ..-.++++++|++..+..++-    +++.+.++.| .++++.|+.|.+|++     +.++..+|
T Consensus        37 avilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~  115 (285)
T 3p2o_A           37 AVILVGDNPASQTYV-KSKAKACEECGIKSLVYHLNENITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESII  115 (285)
T ss_dssp             EEEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSC
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCC
Confidence            345667 44444322 233568899999999998874    3677777777 578999999999997     56666664


Q ss_pred             hcCHhHhHccceeEEEEeCCCCeEEE-eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866          244 EVHPLAQAIAAVNTIIRRPSDGKLIG-YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG  321 (454)
Q Consensus       244 ~~~~~A~~igavNTi~~~~~~g~l~G-~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~  321 (454)
                      - +..+.-+..+|+-..-  .|.-.| .+++..|++..|++.             +.+++||+++|+|+|+ +|+.++..
T Consensus       116 p-~KDVDg~~~~N~g~l~--~g~~~g~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVvGrs~iVG~p~A~l  179 (285)
T 3p2o_A          116 S-SKDVDGFHPINVGYLN--LGLESGFLPCTPLGVMKLLKAY-------------EIDLEGKDAVIIGASNIVGRPMATM  179 (285)
T ss_dssp             G-GGCTTCCSHHHHHHHH--TTCCSSCCCHHHHHHHHHHHHT-------------TCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             c-ccccccCCHhhhhhhh--cCCCCCCCCCCHHHHHHHHHHh-------------CCCCCCCEEEEECCCchHHHHHHHH
Confidence            3 4445556667764322  222333 789999999987752             3678999999999998 69999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      |...|+.|++++|+...                 +.+ ...++|+||+|++.   |.    .+..++++++.+|+|+.++
T Consensus       180 L~~~gAtVtv~h~~t~~-----------------L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDVgi~  234 (285)
T 3p2o_A          180 LLNAGATVSVCHIKTKD-----------------LSL-YTRQADLIIVAAGC---VN----LLRSDMVKEGVIVVDVGIN  234 (285)
T ss_dssp             HHHTTCEEEEECTTCSC-----------------HHH-HHTTCSEEEECSSC---TT----CBCGGGSCTTEEEEECCCE
T ss_pred             HHHCCCeEEEEeCCchh-----------------HHH-HhhcCCEEEECCCC---CC----cCCHHHcCCCeEEEEeccC
Confidence            99999999999986322                 222 34578999999974   32    4788999999999999998


Q ss_pred             CC-------CCHHHHHHHH-CCCc--eeccHH-----HHHHHHHHHHHHhc
Q 012866          402 PR-------KTRLLKDAEA-AGAI--IVSGVE-----MFLRQAIGQFNLFT  437 (454)
Q Consensus       402 P~-------~T~ll~~A~~-~G~~--~~~Gl~-----mlv~Qa~~~f~lw~  437 (454)
                      |.       +..| ..+++ .++.  +-.|.+     ||+.+.+.+.+.|.
T Consensus       235 ~~~~gkl~GDVdf-~~v~~~a~~iTPVPGGVGpmT~a~Ll~ntv~a~~~~~  284 (285)
T 3p2o_A          235 RLESGKIVGDVDF-EEVSKKSSYITPVPGGVGPMTIAMLLENTVKSAKNRL  284 (285)
T ss_dssp             ECTTSCEECSBCH-HHHTTTEEEECCSSSSHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccCCCEeccccH-HHHHhhheEeCCCCCcCcHHHHHHHHHHHHHHHHHhh
Confidence            73       3444 33333 3432  334554     88888777766553

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=99.46  E-value=1.9e-13  Score=132.60  Aligned_cols=225  Identities=20%  Similarity=0.215  Sum_probs=157.5

Q ss_pred             EEEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCch-----HHHHhhhh
Q 012866          175 VFGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCD  243 (454)
Q Consensus       175 ~~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d  243 (454)
                      ..-++| +|-+++.- ..-.++++++|++..+..++-    +++.+.++.| .++++.|+.|.+|+.     +.++..+|
T Consensus        41 avilvg~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~  119 (300)
T 4a26_A           41 ASIIVGQRMDSKKYV-QLKHKAAAEVGMASFNVELPEDISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIH  119 (300)
T ss_dssp             EEEEESCCHHHHHHH-HHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSC
T ss_pred             EEEEeCCCHHHHHHH-HHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCC
Confidence            355667 44444422 233468899999999998854    3677777777 578999999999998     67777765


Q ss_pred             hcCHhHhHccceeEEEEeCCCC-eEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHHHHHH
Q 012866          244 EVHPLAQAIAAVNTIIRRPSDG-KLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRALAFG  321 (454)
Q Consensus       244 ~~~~~A~~igavNTi~~~~~~g-~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~arai~~~  321 (454)
                      - +..+.-+..+|+-.... ++ .-.-.+++..|++..|++.             +.+++||+++|||+|+ +|+.++..
T Consensus       120 p-~KDVDG~~~~N~G~l~~-g~~~~~~~PcTp~gv~~lL~~~-------------~i~l~Gk~vvVIG~s~iVG~p~A~l  184 (300)
T 4a26_A          120 P-HKDADALLPVNVGLLHY-KGREPPFTPCTAKGVIVLLKRC-------------GIEMAGKRAVVLGRSNIVGAPVAAL  184 (300)
T ss_dssp             G-GGCTTCCSHHHHHHHHC-TTCCCSCCCHHHHHHHHHHHHH-------------TCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             c-ccccccCCcceEEEeec-CCCcCCCCCCCHHHHHHHHHHc-------------CCCCCCCEEEEECCCchHHHHHHHH
Confidence            4 55556667777653220 11 1112688999999988753             3678999999999998 79999999


Q ss_pred             HHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecC
Q 012866          322 AKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       322 L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      |...|+.|++++|.....+ +              .+ ...++|+||+|++.   |.    .+..++++++.+|+|+.++
T Consensus       185 L~~~gAtVtv~~~~T~~l~-l--------------~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVIDvgi~  241 (300)
T 4a26_A          185 LMKENATVTIVHSGTSTED-M--------------ID-YLRTADIVIAAMGQ---PG----YVKGEWIKEGAAVVDVGTT  241 (300)
T ss_dssp             HHHTTCEEEEECTTSCHHH-H--------------HH-HHHTCSEEEECSCC---TT----CBCGGGSCTTCEEEECCCE
T ss_pred             HHHCCCeEEEEeCCCCCch-h--------------hh-hhccCCEEEECCCC---CC----CCcHHhcCCCcEEEEEecc
Confidence            9999999999998322211 0              01 23468999999985   32    4788999999999999987


Q ss_pred             CC-------------CCHHHHHHHHC-CCce-ec-cH-----HHHHHHHHHHHHHhcCC
Q 012866          402 PR-------------KTRLLKDAEAA-GAII-VS-GV-----EMFLRQAIGQFNLFTGK  439 (454)
Q Consensus       402 P~-------------~T~ll~~A~~~-G~~~-~~-Gl-----~mlv~Qa~~~f~lw~g~  439 (454)
                      +.             +..| ..+++. ++.+ ++ |.     -||+.+.+.+.+.|.+.
T Consensus       242 ~~~~~~~~~g~kl~GDVdf-~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~  299 (300)
T 4a26_A          242 PVPDPSRKDGYRLVGDVCF-EEAAARAAWISPVPGGVGPMTIAMLLENTLEAFKAALGV  299 (300)
T ss_dssp             EESCSCSTTSCEEECSBCH-HHHTTTCSEEECTTTSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCcCCcccCCceeecCccH-HHHHhhceEeCCCCCcChHHHHHHHHHHHHHHHHHHhcC
Confidence            52             2334 344443 3321 22 43     48999998888887653

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.35  E-value=2.8e-12  Score=125.97  Aligned_cols=132  Identities=16%  Similarity=0.136  Sum_probs=106.3

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.+++++|||+|++|++++..|...|++|++++|+.++++.+.+ ++......+++.+ .+.++|+||+++|.++...
T Consensus       153 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~-~g~~~~~~~~l~~-~l~~aDvVi~~~p~~~i~~  230 (300)
T 2rir_A          153 YTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITE-MGLVPFHTDELKE-HVKDIDICINTIPSMILNQ  230 (300)
T ss_dssp             SCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-TTCEEEEGGGHHH-HSTTCSEEEECCSSCCBCH
T ss_pred             CCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH-CCCeEEchhhHHH-HhhCCCEEEECCChhhhCH
Confidence            4688999999999999999999999999999999999988776544 4443323344544 4568999999999865321


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCcee--ccHHHHHHHHHHHHHHhcC
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV--SGVEMFLRQAIGQFNLFTG  438 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~--~Gl~mlv~Qa~~~f~lw~g  438 (454)
                         .  ..+.++++.+++|+.+.|..|.+ +.++++|+.++  +|+.|.+.|+...+.+|..
T Consensus       231 ---~--~~~~mk~g~~lin~a~g~~~~~~-~~a~~~G~~~i~~pg~~g~v~~a~a~~l~~~~  286 (300)
T 2rir_A          231 ---T--VLSSMTPKTLILDLASRPGGTDF-KYAEKQGIKALLAPGLPGIVAPKTAGQILANV  286 (300)
T ss_dssp             ---H--HHTTSCTTCEEEECSSTTCSBCH-HHHHHHTCEEEECCCHHHHHCHHHHHHHHHHH
T ss_pred             ---H--HHHhCCCCCEEEEEeCCCCCcCH-HHHHHCCCEEEECCCCCCcHHHHHHHHHHHHH
Confidence               0  12346788999999999998987 89999999865  9999999999999999864

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=99.28  E-value=9.3e-14  Score=144.07  Aligned_cols=134  Identities=18%  Similarity=0.257  Sum_probs=103.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccc---ccccccCCCCccEEEECCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPF---EDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~---~~l~~~~~~~~divInat~~g~~  376 (454)
                      +++++|+|+|++|++++.+|.+.|++|++++|+.++++++++.++. ..  .++   +++.+ .+.++|+|||++|.++.
T Consensus         3 ~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~-~l~~~DvVIn~a~~~~~   81 (450)
T 1ff9_A            3 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA-EVAKHDLVISLIPYTFH   81 (450)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHH-HHTTSSEEEECCC--CH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHH-HHcCCcEEEECCccccc
Confidence            5789999999999999999999999999999999999988876542 11  122   23333 24578999999998764


Q ss_pred             CCCCCCCCChhcccCCcEEEEEe-cCCCCCHHHHHHHHCCCceeccHHH-----------HHHHH------HHHHHHhcC
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAV-YTPRKTRLLKDAEAAGAIIVSGVEM-----------FLRQA------IGQFNLFTG  438 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~-y~P~~T~ll~~A~~~G~~~~~Gl~m-----------lv~Qa------~~~f~lw~g  438 (454)
                      +.     +..+++..+..++|.+ |.|..++++++|+++|+.+++|.+|           +++|+      +.+|++|+|
T Consensus        82 ~~-----i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~~i~g~g~~pg~~~~~a~~li~q~~~~gg~i~~~~~~~G  156 (450)
T 1ff9_A           82 AT-----VIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVMNEIGLDPGIDHLYAIKTIEEVHAAGGKIKTFLSYCG  156 (450)
T ss_dssp             HH-----HHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCEEECSCBBTTBHHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             hH-----HHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCeEEeCCCCcCchHHHHHHHHHHHhcccCCeeeEEEEEEc
Confidence            32     3445666666666665 4677899999999999999999999           89998      778899998


Q ss_pred             CCCC
Q 012866          439 KEAP  442 (454)
Q Consensus       439 ~~~p  442 (454)
                      ..++
T Consensus       157 ~~p~  160 (450)
T 1ff9_A          157 GLPA  160 (450)
T ss_dssp             EEEC
T ss_pred             ccCc
Confidence            7654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=99.26  E-value=6.6e-12  Score=124.09  Aligned_cols=140  Identities=16%  Similarity=0.148  Sum_probs=109.7

Q ss_pred             CCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHHHHHH
Q 012866          264 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFERAKS  341 (454)
Q Consensus       264 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~-G~-~v~i~nRt~~~a~~  341 (454)
                      .+.|.|+|||..|++.+.  .+.             ..+.+++.|||+|.+|++++.+|.+. |. +|+++||+.+++++
T Consensus       111 ~~~lt~~rT~a~~~la~~--~la-------------~~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~  175 (312)
T 2i99_A          111 GNVITAKRTAAVSAIATK--FLK-------------PPSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEK  175 (312)
T ss_dssp             CHHHHHHHHHHHHHHHHH--HHS-------------CTTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHH--HhC-------------CCCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHH
Confidence            456899999999998872  232             23467899999999999999999875 88 99999999999999


Q ss_pred             HHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE-ecCCCCCHHHHHHHHCCCceec
Q 012866          342 LASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA-VYTPRKTRLLKDAEAAGAIIVS  420 (454)
Q Consensus       342 la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~-~y~P~~T~ll~~A~~~G~~~~~  420 (454)
                      ++++++......+++.+ .+.++|+||+|||.. .|     .+..++++++.+++|+ .|.|..+++.++++++|+.+++
T Consensus       176 l~~~~~~~~~~~~~~~e-~v~~aDiVi~atp~~-~~-----v~~~~~l~~g~~vi~~g~~~p~~~el~~~~~~~g~~~vD  248 (312)
T 2i99_A          176 FADTVQGEVRVCSSVQE-AVAGADVIITVTLAT-EP-----ILFGEWVKPGAHINAVGASRPDWRELDDELMKEAVLYVD  248 (312)
T ss_dssp             HHHHSSSCCEECSSHHH-HHTTCSEEEECCCCS-SC-----CBCGGGSCTTCEEEECCCCSTTCCSBCHHHHHHSEEEES
T ss_pred             HHHHhhCCeEEeCCHHH-HHhcCCEEEEEeCCC-Cc-----ccCHHHcCCCcEEEeCCCCCCCceeccHHHHhcCEEEEC
Confidence            99987621112233333 345689999999852 11     2445788999999998 7889889999999999999999


Q ss_pred             cHHHH
Q 012866          421 GVEMF  425 (454)
Q Consensus       421 Gl~ml  425 (454)
                      +.++-
T Consensus       249 ~~~~a  253 (312)
T 2i99_A          249 SQEAA  253 (312)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            98753

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=99.23  E-value=1.4e-11  Score=122.26  Aligned_cols=135  Identities=17%  Similarity=0.157  Sum_probs=105.1

Q ss_pred             CCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHH
Q 012866          264 DGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKS  341 (454)
Q Consensus       264 ~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~  341 (454)
                      .+.+.|+||++.|++.+..  +.             ..+.++++|||+|++|++.+.+|.+ .+. +|.|+||+.+++++
T Consensus       101 ~~~lt~~RTaa~s~laa~~--la-------------~~~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~  165 (322)
T 1omo_A          101 ATYTTSLRTGAAGGIAAKY--LA-------------RKNSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKK  165 (322)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--HS-------------CTTCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHh--cc-------------CCCCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHH
Confidence            4568899999999888742  32             1246799999999999999999987 466 89999999999999


Q ss_pred             HHHHhcC---CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEE-ecCCCCCHHHHHHHHCCCc
Q 012866          342 LASDVMG---AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDA-VYTPRKTRLLKDAEAAGAI  417 (454)
Q Consensus       342 la~~~~~---~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~-~y~P~~T~ll~~A~~~G~~  417 (454)
                      ++++++.   ... .+++++ .+ ++|+||+|||.+. |     .+..++++++..|+|+ .|.|..+.+-.+..+++..
T Consensus       166 la~~~~~~~~~~~-~~~~~e-~v-~aDvVi~aTp~~~-p-----v~~~~~l~~G~~V~~ig~~~p~~~el~~~~~~~a~v  236 (322)
T 1omo_A          166 FVSYCEDRGISAS-VQPAEE-AS-RCDVLVTTTPSRK-P-----VVKAEWVEEGTHINAIGADGPGKQELDVEILKKAKI  236 (322)
T ss_dssp             HHHHHHHTTCCEE-ECCHHH-HT-SSSEEEECCCCSS-C-----CBCGGGCCTTCEEEECSCCSTTCCCBCHHHHHTEEE
T ss_pred             HHHHHHhcCceEE-ECCHHH-Hh-CCCEEEEeeCCCC-c-----eecHHHcCCCeEEEECCCCCCCccccCHHHHhcCeE
Confidence            9998763   222 445555 45 7999999999753 2     3556789999999999 8999877766666666667


Q ss_pred             eeccH
Q 012866          418 IVSGV  422 (454)
Q Consensus       418 ~~~Gl  422 (454)
                      +++-.
T Consensus       237 ~vD~~  241 (322)
T 1omo_A          237 VVDDL  241 (322)
T ss_dssp             EESCH
T ss_pred             EECCH
Confidence            77743

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.20  E-value=5.3e-11  Score=116.48  Aligned_cols=120  Identities=16%  Similarity=0.155  Sum_probs=96.1

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.+++++|+|+|++|++++..|...|++|++++|+.++.+.+. +++....+++++.+ .+.++|+||+++|.++...
T Consensus       151 ~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~-~~g~~~~~~~~l~~-~l~~aDvVi~~~p~~~i~~  228 (293)
T 3d4o_A          151 FTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA-EMGMEPFHISKAAQ-ELRDVDVCINTIPALVVTA  228 (293)
T ss_dssp             SCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-HTTSEEEEGGGHHH-HTTTCSEEEECCSSCCBCH
T ss_pred             CCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH-HCCCeecChhhHHH-HhcCCCEEEECCChHHhCH
Confidence            467899999999999999999999999999999999998876554 45544333344544 4578999999999765321


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCcee--ccHHHHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV--SGVEMFL  426 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~--~Gl~mlv  426 (454)
                         .  ..+.++++.+++|+.+.|..|.+ +.+++.|+.++  +|+.+.+
T Consensus       229 ---~--~l~~mk~~~~lin~ar~~~~~~~-~~a~~~Gv~~~~~~~l~~~v  272 (293)
T 3d4o_A          229 ---N--VLAEMPSHTFVIDLASKPGGTDF-RYAEKRGIKALLVPGLPGIV  272 (293)
T ss_dssp             ---H--HHHHSCTTCEEEECSSTTCSBCH-HHHHHHTCEEEECCCHHHHH
T ss_pred             ---H--HHHhcCCCCEEEEecCCCCCCCH-HHHHHCCCEEEECCCCCccc
Confidence               0  12346788999999999999987 89999999875  9999999

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=99.08  E-value=6.5e-11  Score=118.69  Aligned_cols=148  Identities=15%  Similarity=0.104  Sum_probs=106.5

Q ss_pred             cceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHH-HCCC-eEE
Q 012866          253 AAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGA-RVV  330 (454)
Q Consensus       253 gavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~-~~G~-~v~  330 (454)
                      |..-.++ +  ++.|+|+|||+.|++.+..  +.             ..+.++++|||+|++|++++.+|. ..+. +|+
T Consensus        97 G~p~a~~-d--~~~lT~~RTaa~s~laa~~--la-------------~~~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~  158 (350)
T 1x7d_A           97 GYPVLLS-E--LTIATALRTAATSLMAAQA--LA-------------RPNARKMALIGNGAQSEFQALAFHKHLGIEEIV  158 (350)
T ss_dssp             CCEEEEE-E--CHHHHHHHHHHHHHHHHHH--HS-------------CTTCCEEEEECCSTTHHHHHHHHHHHSCCCEEE
T ss_pred             CCEEEEE-c--CCEEEeehhhHHHHHHHHH--hc-------------cccCCeEEEECCcHHHHHHHHHHHHhCCCcEEE
Confidence            4444444 2  5679999999999998853  32             134689999999999999999876 4566 899


Q ss_pred             EEeCCHHHHHHHHHHhcC----CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe-cCCCCC
Q 012866          331 IFDIDFERAKSLASDVMG----AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV-YTPRKT  405 (454)
Q Consensus       331 i~nRt~~~a~~la~~~~~----~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~-y~P~~T  405 (454)
                      |+||+.++++++++++..    .....+++.+ .+.++|+||+|||.++.    ...+..++++++..+.++. |.|...
T Consensus       159 V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~e-av~~aDiVi~aTps~~~----~pvl~~~~l~~G~~V~~vgs~~p~~~  233 (350)
T 1x7d_A          159 AYDTDPLATAKLIANLKEYSGLTIRRASSVAE-AVKGVDIITTVTADKAY----ATIITPDMLEPGMHLNAVGGDCPGKT  233 (350)
T ss_dssp             EECSSHHHHHHHHHHHTTCTTCEEEECSSHHH-HHTTCSEEEECCCCSSE----EEEECGGGCCTTCEEEECSCCBTTBE
T ss_pred             EEcCCHHHHHHHHHHHHhccCceEEEeCCHHH-HHhcCCEEEEeccCCCC----CceecHHHcCCCCEEEECCCCCCCce
Confidence            999999999999998842    1222334433 34678999999998641    1235667899999999986 456544


Q ss_pred             HHHHHHHHCCCceeccHH
Q 012866          406 RLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       406 ~ll~~A~~~G~~~~~Gl~  423 (454)
                      .+-.+..+++..+++-.+
T Consensus       234 El~~~~~~~a~v~vD~~~  251 (350)
T 1x7d_A          234 ELHADVLRNARVFVEYEP  251 (350)
T ss_dssp             EECHHHHHTSEEEESSHH
T ss_pred             eeCHHHHhcCcEEECCHH
Confidence            444556667777887654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=99.04  E-value=1.9e-10  Score=100.26  Aligned_cols=91  Identities=19%  Similarity=0.171  Sum_probs=75.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      +++++|+|+|++|++++..|...|++|++++|+.+++++++++++......+++.+ .+.++|+||+|||.+. +     
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~Divi~at~~~~-~-----   93 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDS-LIKNNDVIITATSSKT-P-----   93 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHH-HHHTCSEEEECSCCSS-C-----
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHH-HhcCCCEEEEeCCCCC-c-----
Confidence            78999999999999999999999999999999999999999998754434445444 3457899999998752 1     


Q ss_pred             CCChhcccCCcEEEEEec
Q 012866          383 PVSEETLRDYQLVFDAVY  400 (454)
Q Consensus       383 ~i~~~~l~~~~~v~D~~y  400 (454)
                      .+..++++++.+++|+..
T Consensus        94 ~~~~~~l~~g~~vid~~~  111 (144)
T 3oj0_A           94 IVEERSLMPGKLFIDLGN  111 (144)
T ss_dssp             SBCGGGCCTTCEEEECCS
T ss_pred             EeeHHHcCCCCEEEEccC
Confidence            355678899999999975

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.85  E-value=2.2e-08  Score=95.90  Aligned_cols=205  Identities=16%  Similarity=0.181  Sum_probs=129.2

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCchHHHHhhhhhcCHhH
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYKEAVMKFCDEVHPLA  249 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  249 (454)
                      .-++| +|-+++.- ..-.++.++.|+ .....++-    +++.+.++.| .++++.|+-|-.|.-..+       ++. 
T Consensus        32 vilvg~dpaS~~Yv-~~k~k~~~~~Gi-~~~~~lp~~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~i-------d~~-  101 (276)
T 3ngx_A           32 LIQIGDNEAASIYA-RAKIRRGKKIGI-AVDLEKYDDISMKDLLKRIDDLAKDPQINGIMIENPLPKGF-------DYY-  101 (276)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTC-EEEEEEESSCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTC-------CHH-
T ss_pred             EEEeCCCHHHHHHH-HHHHHHHHHCCe-EEEEECCCCCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCC-------CHH-
Confidence            44566 44444422 233467889999 76666553    2566666666 688999999999964211       111 


Q ss_pred             hHccceeEEEEeCCCCeEEEee-------------ccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hH
Q 012866          250 QAIAAVNTIIRRPSDGKLIGYN-------------TDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AG  315 (454)
Q Consensus       250 ~~igavNTi~~~~~~g~l~G~N-------------TD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~a  315 (454)
                      +.+.+++--. + -|| ++-+|             .--.|++..|++.             +  ++||+++|+|+|+ +|
T Consensus       102 ~v~~~I~p~K-D-VDG-~~p~n~G~l~~g~~~~~PcTp~gv~~lL~~~-------------~--l~Gk~vvVvG~s~iVG  163 (276)
T 3ngx_A          102 EIVRNIPYYK-D-VDA-LSPYNQGLIALNREFLVPATPRAVIDIMDYY-------------G--YHENTVTIVNRSPVVG  163 (276)
T ss_dssp             HHHTTSCGGG-B-TTC-CSHHHHHHHHTTCCSSCCHHHHHHHHHHHHH-------------T--CCSCEEEEECCCTTTH
T ss_pred             HHHhhCCCCC-c-ccC-CCccchhhhhcCCCCCCCCcHHHHHHHHHHh-------------C--cCCCEEEEEcCChHHH
Confidence            1111121100 0 011 11111             1235777776642             2  8899999999997 79


Q ss_pred             HHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEE
Q 012866          316 RALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLV  395 (454)
Q Consensus       316 rai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v  395 (454)
                      +.++..|..+|+.|++++|+...                 +.+ ...++|+||+|++.   |.    .+..++++++.+|
T Consensus       164 ~plA~lL~~~gAtVtv~~~~t~~-----------------L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavV  218 (276)
T 3ngx_A          164 RPLSMMLLNRNYTVSVCHSKTKD-----------------IGS-MTRSSKIVVVAVGR---PG----FLNREMVTPGSVV  218 (276)
T ss_dssp             HHHHHHHHHTTCEEEEECTTCSC-----------------HHH-HHHHSSEEEECSSC---TT----CBCGGGCCTTCEE
T ss_pred             HHHHHHHHHCCCeEEEEeCCccc-----------------HHH-hhccCCEEEECCCC---Cc----cccHhhccCCcEE
Confidence            99999999999999999985322                 222 23468999999975   32    4788999999999


Q ss_pred             EEEecCC------CCCHHHHHHHH-CCCc--eeccHH-----HHHHHHHHHHH
Q 012866          396 FDAVYTP------RKTRLLKDAEA-AGAI--IVSGVE-----MFLRQAIGQFN  434 (454)
Q Consensus       396 ~D~~y~P------~~T~ll~~A~~-~G~~--~~~Gl~-----mlv~Qa~~~f~  434 (454)
                      +|+.++|      .+..| ..+++ .++.  +-.|.+     ||+.+.+.+.+
T Consensus       219 IDvgi~~~~gkl~GDVdf-~~v~~~a~~iTPVPGGVGpmT~a~Ll~n~v~a~~  270 (276)
T 3ngx_A          219 IDVGINYVNDKVVGDANF-EDLSEYVEAITPVPGGVGPITATNILENVVKAAE  270 (276)
T ss_dssp             EECCCEEETTEEECSBCH-HHHHTTSSEECCTTTSSHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCccCCceeccccH-HHHhhhceEeCCCCCcChHHHHHHHHHHHHHHHH
Confidence            9999987      35555 34444 3432  123554     77777666554

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.73  E-value=3.8e-09  Score=103.86  Aligned_cols=225  Identities=14%  Similarity=0.127  Sum_probs=129.0

Q ss_pred             HHHHHhcCCCceEEecccC-CHHHHHHhc-CCCCCCEEEeccCchHHH--HhhhhhcCHhHhHccceeEE------EE--
Q 012866          193 NPTFRHVNYNGIYVPMFVD-DLKKFFSTY-SSPDFAGFSVGFPYKEAV--MKFCDEVHPLAQAIAAVNTI------IR--  260 (454)
Q Consensus       193 n~~f~~~gl~~~y~~~~~~-~~~~~~~~l-~~~~~~G~~VT~P~K~~v--~~~~d~~~~~A~~igavNTi------~~--  260 (454)
                      .++.++.|++.....++-+ ++.+.++.| .++++.|+-|-.|.-..+  -..++.++|. |.+-..+.+      ..  
T Consensus        58 ~k~~~~~Gi~~~~~~l~~~~~l~~~i~~lN~d~~v~GIlvqlPlp~~~~~~~i~~~I~p~-KDVDG~~~~n~g~l~~~~~  136 (320)
T 1edz_A           58 QKTSESMGFRYDLRVIEDKDFLEEAIIQANGDDSVNGIMVYFPVFGNAQDQYLQQVVCKE-KDVEGLNHVYYQNLYHNVR  136 (320)
T ss_dssp             HHHHHHHTCEEEEEECSSGGGHHHHHHHHHHCTTCCEEEECSCSSSSHHHHHHTTTSCTT-TBTTCCSHHHHHHHHTTCC
T ss_pred             HHHHHHcCCEEEEEECCChHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc-cccCcCChhhhHHHhcCCc
Confidence            4678999999877777654 477788777 689999999999963221  1112211111 111000000      00  


Q ss_pred             --eCCCCeEEEe-eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchh-HHHHHHHHHHCCCeEEEEeCCH
Q 012866          261 --RPSDGKLIGY-NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       261 --~~~~g~l~G~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~-arai~~~L~~~G~~v~i~nRt~  336 (454)
                        .+ .+.--++ -.-..|.+..|++.    +..+.-=+.+.++++++++|||+|.+ |+.++..|...|++|+++||+.
T Consensus       137 ~l~~-~~~~~~~~PcTp~a~v~ll~~~----~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~  211 (320)
T 1edz_A          137 YLDK-ENRLKSILPCTPLAIVKILEFL----KIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNN  211 (320)
T ss_dssp             BSSS-SSCSBCCCCHHHHHHHHHHHHT----TCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSE
T ss_pred             cccc-cccCCCcCCCcHHHHHHHHHhh----cccccccccCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCch
Confidence              00 0000000 01235666665541    00000000235789999999999986 9999999999999999999984


Q ss_pred             HHHHHHHHHhcCCccc------c--ccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHH
Q 012866          337 ERAKSLASDVMGAARP------F--EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLL  408 (454)
Q Consensus       337 ~~a~~la~~~~~~~~~------~--~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll  408 (454)
                      .+..+.+..+......      .  +++.+ .+.++|+||+||+.   |.   ..+..++++++.+++|+...+ +-.  
T Consensus       212 ~~l~~ra~~la~~~~~~t~~~~t~~~~L~e-~l~~ADIVIsAtg~---p~---~vI~~e~vk~GavVIDVgi~r-D~d--  281 (320)
T 1edz_A          212 IQKFTRGESLKLNKHHVEDLGEYSEDLLKK-CSLDSDVVITGVPS---EN---YKFPTEYIKEGAVCINFACTK-NFS--  281 (320)
T ss_dssp             EEEEESCCCSSCCCCEEEEEEECCHHHHHH-HHHHCSEEEECCCC---TT---CCBCTTTSCTTEEEEECSSSC-CBC--
T ss_pred             HHHHhHHHHHhhhcccccccccccHhHHHH-HhccCCEEEECCCC---Cc---ceeCHHHcCCCeEEEEcCCCc-ccc--
Confidence            3322222222221111      1  45555 45679999999975   22   127888999999999998754 220  


Q ss_pred             HHHHHC-CCceeccH-----HHHHHHHHHHHH
Q 012866          409 KDAEAA-GAIIVSGV-----EMFLRQAIGQFN  434 (454)
Q Consensus       409 ~~A~~~-G~~~~~Gl-----~mlv~Qa~~~f~  434 (454)
                      ..++++ ++ +.++.     -||+...+.+.+
T Consensus       282 ~~v~~~a~~-itPvVGpmT~a~Ll~n~~~a~~  312 (320)
T 1edz_A          282 DDVKEKASL-YVPMTGKVTIAMLLRNMLRLVR  312 (320)
T ss_dssp             GGGGTTEEE-EESCCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHhhCCe-eCCCccHHHHHHHHHHHHHHHH
Confidence            122222 32 22333     477777776655

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.70  E-value=2.5e-07  Score=89.16  Aligned_cols=218  Identities=16%  Similarity=0.208  Sum_probs=137.1

Q ss_pred             EEEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCch-----HHHHhhhh
Q 012866          175 VFGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCD  243 (454)
Q Consensus       175 ~~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d  243 (454)
                      ..-++| +|-+++.- ..-.++.++.|+......++-    +++.+.++.| .++++.|+-|-.|.-     +.++..+ 
T Consensus        37 avilvG~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I-  114 (288)
T 1b0a_A           37 AVVLVGSNPASQIYV-ASKRKACEEVGFVSRSYDLPETTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERI-  114 (288)
T ss_dssp             EEEEESCCHHHHHHH-HHHHHHHHHHTCEECCEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTS-
T ss_pred             EEEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhcc-
Confidence            344566 44444322 223457889999876665543    3566777777 688999999999963     2222222 


Q ss_pred             hcCHhHhHccceeEEEEeCCCCeEE-E----eeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-hHHH
Q 012866          244 EVHPLAQAIAAVNTIIRRPSDGKLI-G----YNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-AGRA  317 (454)
Q Consensus       244 ~~~~~A~~igavNTi~~~~~~g~l~-G----~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~ara  317 (454)
                        +|. |.+-..+.+ +   -|+++ |    .-.--.|++..|++             .+.+++|++|+|||+|+ .|+.
T Consensus       115 --~p~-KDVDG~~p~-n---~g~l~~g~~~~~PcTp~gi~~ll~~-------------~~i~l~gk~vvVIG~s~iVG~p  174 (288)
T 1b0a_A          115 --HPD-KDVDGFHPY-N---VGRLCQRAPRLRPCTPRGIVTLLER-------------YNIDTFGLNAVVIGASNIVGRP  174 (288)
T ss_dssp             --CTT-TCTTCCSHH-H---HHHHHTTCCSSCCHHHHHHHHHHHH-------------TTCCCTTCEEEEECCCTTTHHH
T ss_pred             --CCc-cCcccCCcc-c---hhHHhCCCCCCCCCcHHHHHHHHHH-------------cCCCCCCCEEEEECCChHHHHH
Confidence              110 000000000 0   00110 0    01234566666554             23678999999999997 5999


Q ss_pred             HHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEE
Q 012866          318 LAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFD  397 (454)
Q Consensus       318 i~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D  397 (454)
                      ++..|...|+.|++++++...                 +.+ ...++|+||+|++.   |.    .+..++++++.+|+|
T Consensus       175 ~A~lL~~~gAtVtv~hs~t~~-----------------L~~-~~~~ADIVI~Avg~---p~----lI~~~~vk~GavVID  229 (288)
T 1b0a_A          175 MSMELLLAGCTTTVTHRFTKN-----------------LRH-HVENADLLIVAVGK---PG----FIPGDWIKEGAIVID  229 (288)
T ss_dssp             HHHHHHTTTCEEEEECSSCSC-----------------HHH-HHHHCSEEEECSCC---TT----CBCTTTSCTTCEEEE
T ss_pred             HHHHHHHCCCeEEEEeCCchh-----------------HHH-HhccCCEEEECCCC---cC----cCCHHHcCCCcEEEE
Confidence            999999999999999876422                 222 23468999999984   32    478889999999999


Q ss_pred             EecCC-------CCCHHHHHHHHCCCce-e-ccH-----HHHHHHHHHHHHHhcCC
Q 012866          398 AVYTP-------RKTRLLKDAEAAGAII-V-SGV-----EMFLRQAIGQFNLFTGK  439 (454)
Q Consensus       398 ~~y~P-------~~T~ll~~A~~~G~~~-~-~Gl-----~mlv~Qa~~~f~lw~g~  439 (454)
                      +..++       .+..|-...+..++.+ + .|.     -||+.+.+.+.+.|...
T Consensus       230 Vgi~r~~~g~l~GDVdf~~v~~~a~~iTPVPGGVGpmT~a~Ll~Ntv~aa~~~~~~  285 (288)
T 1b0a_A          230 VGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDP  285 (288)
T ss_dssp             CCCEECTTSCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             ccCCccCCCCccCCcCHHHHhhhccEecCCCCCccHHHHHHHHHHHHHHHHHhhcc
Confidence            98765       2455544445556532 2 344     49999999988877654

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.63  E-value=1.8e-07  Score=90.66  Aligned_cols=218  Identities=19%  Similarity=0.250  Sum_probs=134.6

Q ss_pred             EEEEec-CCCCcccCHHHHHHHHHhcCCCceEEecccC----CHHHHHHhc-CCCCCCEEEeccCch-------HHHHhh
Q 012866          175 VFGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFVD----DLKKFFSTY-SSPDFAGFSVGFPYK-------EAVMKF  241 (454)
Q Consensus       175 ~~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~----~~~~~~~~l-~~~~~~G~~VT~P~K-------~~v~~~  241 (454)
                      ..-++| +|-+++.- ..-.++.++.|++.....++-+    ++.+.++.| .++++.|+-|-.|.-       +.++..
T Consensus        39 avilvG~dpaS~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~  117 (301)
T 1a4i_A           39 AILQVGNRDDSNLYI-NVKLKAAEEIGIKATHIKLPRTTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINA  117 (301)
T ss_dssp             EEEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHT
T ss_pred             EEEEeCCChhHHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhc
Confidence            344666 44444322 1234578899999877666542    577777777 689999999999962       223222


Q ss_pred             hhhcCHhHhHcc---ceeE--EEEeCCCCeEEEe-eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccch-h
Q 012866          242 CDEVHPLAQAIA---AVNT--IIRRPSDGKLIGY-NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGG-A  314 (454)
Q Consensus       242 ~d~~~~~A~~ig---avNT--i~~~~~~g~l~G~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG-~  314 (454)
                      +   +|. |.+-   -.|.  +...  +.. -++ -.--.|++..|++             .+.+++|++|+|||+|. .
T Consensus       118 I---~p~-KDVDG~hp~N~G~l~~g--~~~-~~~~PcTp~gi~~ll~~-------------~~i~l~gk~vvVIG~s~iV  177 (301)
T 1a4i_A          118 I---APE-KDVDGLTSINAGRLARG--DLN-DCFIPCTPKGCLELIKE-------------TGVPIAGRHAVVVGRSKIV  177 (301)
T ss_dssp             S---CGG-GBTTCCSHHHHHHHHTT--CCS-SCCCCHHHHHHHHHHHT-------------TTCCCTTCEEEEECCCTTT
T ss_pred             c---CCC-CCccCCChhhHHHHhcC--CCC-CCccCchHHHHHHHHHH-------------cCCCCCCCEEEEECCCchH
Confidence            2   111 1100   0111  0000  000 001 1235566666543             24678999999999996 6


Q ss_pred             HHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcE
Q 012866          315 GRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQL  394 (454)
Q Consensus       315 arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~  394 (454)
                      |+.++..|..+|+.|++++++..                 ++.+ ...++|+||+|++.   |.    .+..++++++.+
T Consensus       178 G~p~A~lL~~~gAtVtv~hs~t~-----------------~L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~Gav  232 (301)
T 1a4i_A          178 GAPMHDLLLWNNATVTTCHSKTA-----------------HLDE-EVNKGDILVVATGQ---PE----MVKGEWIKPGAI  232 (301)
T ss_dssp             HHHHHHHHHHTTCEEEEECTTCS-----------------SHHH-HHTTCSEEEECCCC---TT----CBCGGGSCTTCE
T ss_pred             HHHHHHHHHhCCCeEEEEECCcc-----------------cHHH-HhccCCEEEECCCC---cc----cCCHHHcCCCcE
Confidence            99999999999999999986522                 2322 34678999999975   32    488899999999


Q ss_pred             EEEEecCCCC-------------CHHHHHHHH-CCCc--eeccHH-----HHHHHHHHHHHHhcCC
Q 012866          395 VFDAVYTPRK-------------TRLLKDAEA-AGAI--IVSGVE-----MFLRQAIGQFNLFTGK  439 (454)
Q Consensus       395 v~D~~y~P~~-------------T~ll~~A~~-~G~~--~~~Gl~-----mlv~Qa~~~f~lw~g~  439 (454)
                      |+|+..++.+             ..| ..+++ .++.  +-.|.+     ||+...+.+.+.|..+
T Consensus       233 VIDVgi~~~~d~~~~~g~klvGDVdf-~~v~~~a~~iTPVPGGVGpmTiamLl~Ntv~aa~~~~~~  297 (301)
T 1a4i_A          233 VIDCGINYVPDDKKPNGRKVVGDVAY-DEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRFLEK  297 (301)
T ss_dssp             EEECCCBC----------CCBCSBCH-HHHTTTCSEECCSSSSHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEccCCCcccccccCCCeeeccccH-HHhhhhceEeCCCCCCccHHHHHHHHHHHHHHHHHHhhc
Confidence            9999987532             123 23333 3432  223554     8888888888776643

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.52  E-value=4.6e-07  Score=87.03  Aligned_cols=180  Identities=18%  Similarity=0.270  Sum_probs=114.8

Q ss_pred             EEEec-CCCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCch-----HHHHhhhhh
Q 012866          176 FGLIS-KPVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDE  244 (454)
Q Consensus       176 ~~liG-~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~  244 (454)
                      .-++| +|-+++.- ..-.++.++.|+......++-    +++.+.++.| .++++.|+-|-.|.-     +.++..+  
T Consensus        37 vilvg~dpas~~Yv-~~k~k~~~~~Gi~~~~~~lp~~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I--  113 (281)
T 2c2x_A           37 TILVGDDPGSQAYV-RGKHADCAKVGITSIRRDLPADISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERV--  113 (281)
T ss_dssp             EEEESCCHHHHHHH-HHHHHHHHHHTCEEEEEEECTTCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHS--
T ss_pred             EEEeCCChhhHHHH-HHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhc--
Confidence            44566 44443322 223457889999987766653    2566667666 688999999999963     2222221  


Q ss_pred             cCHhHhHccceeEEEEeCCCCeE-EE---e-eccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchh-HHHH
Q 012866          245 VHPLAQAIAAVNTIIRRPSDGKL-IG---Y-NTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGA-GRAL  318 (454)
Q Consensus       245 ~~~~A~~igavNTi~~~~~~g~l-~G---~-NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~-arai  318 (454)
                       +|. |.+-..+.+ +   -|++ .|   + -.--.|++..|++             .+.+++||+++|+|+|.+ |+.+
T Consensus       114 -~p~-KDVDG~~p~-n---~g~l~~g~~~~~PcTp~gi~~ll~~-------------~~i~l~gk~vvVvG~s~iVG~p~  174 (281)
T 2c2x_A          114 -DPA-KDADGLHPT-N---LGRLVLGTPAPLPCTPRGIVHLLRR-------------YDISIAGAHVVVIGRGVTVGRPL  174 (281)
T ss_dssp             -CGG-GBTTSCCHH-H---HHHHHHTCCCCCCHHHHHHHHHHHH-------------TTCCCTTCEEEEECCCTTTHHHH
T ss_pred             -Ccc-CCccCCChh-h---HHHHhCCCCCCCCChHHHHHHHHHH-------------cCCCCCCCEEEEECCCcHHHHHH
Confidence             111 000000000 0   0000 00   0 1234566666553             135789999999999986 9999


Q ss_pred             HHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEE
Q 012866          319 AFGAKSR--GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVF  396 (454)
Q Consensus       319 ~~~L~~~--G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~  396 (454)
                      +..|...  |+.|++++|+..                 ++.+ ...++|+||+|++.   |.    .+..++++++.+|+
T Consensus       175 A~lL~~~g~~atVtv~h~~t~-----------------~L~~-~~~~ADIVI~Avg~---p~----~I~~~~vk~GavVI  229 (281)
T 2c2x_A          175 GLLLTRRSENATVTLCHTGTR-----------------DLPA-LTRQADIVVAAVGV---AH----LLTADMVRPGAAVI  229 (281)
T ss_dssp             HHHHTSTTTCCEEEEECTTCS-----------------CHHH-HHTTCSEEEECSCC---TT----CBCGGGSCTTCEEE
T ss_pred             HHHHhcCCCCCEEEEEECchh-----------------HHHH-HHhhCCEEEECCCC---Cc----ccCHHHcCCCcEEE
Confidence            9999999  789999987742                 2222 34678999999984   32    48889999999999


Q ss_pred             EEecCC
Q 012866          397 DAVYTP  402 (454)
Q Consensus       397 D~~y~P  402 (454)
                      |+..++
T Consensus       230 DVgi~r  235 (281)
T 2c2x_A          230 DVGVSR  235 (281)
T ss_dssp             ECCEEE
T ss_pred             EccCCC
Confidence            998765

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=98.48  E-value=1.8e-08  Score=102.88  Aligned_cols=113  Identities=15%  Similarity=0.213  Sum_probs=81.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHhcC----Cc----ccc---ccccccCCCC--ccEE
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG---ARVVIFDIDFERAKSLASDVMG----AA----RPF---EDILNFQPEK--GAIL  367 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G---~~v~i~nRt~~~a~~la~~~~~----~~----~~~---~~l~~~~~~~--~div  367 (454)
                      ++++|+|+|++|++++..|.+.|   .+|++++|+.++++++++.++.    ..    .++   +++.+ .+.+  .|+|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~-~l~~~~~DvV   80 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVA-LINEVKPQIV   80 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHH-HHHHHCCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHH-HHHhhCCCEE
Confidence            47999999999999999999998   3899999999999999988753    11    122   22222 1223  7999


Q ss_pred             EECCCCCCCCCCCCCCCChhcccCCcEEEEE-ecCCC-CC--------HHHHHHHHCCCceeccH
Q 012866          368 ANATPLGMHPNTDRVPVSEETLRDYQLVFDA-VYTPR-KT--------RLLKDAEAAGAIIVSGV  422 (454)
Q Consensus       368 Inat~~g~~p~~~~~~i~~~~l~~~~~v~D~-~y~P~-~T--------~ll~~A~~~G~~~~~Gl  422 (454)
                      ||+++....     .++...++..+.-++|+ .|.|. .+        .+.+.|+++|+.++.|.
T Consensus        81 in~ag~~~~-----~~v~~a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g~  140 (405)
T 4ina_A           81 LNIALPYQD-----LTIMEACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLGS  140 (405)
T ss_dssp             EECSCGGGH-----HHHHHHHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEECC
T ss_pred             EECCCcccC-----hHHHHHHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEcC
Confidence            999974321     23445567777779997 46554 23        78899999998876554

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.47  E-value=1.4e-07  Score=93.06  Aligned_cols=112  Identities=20%  Similarity=0.158  Sum_probs=78.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHh----cCCccccccccccCCCCccEEEECCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDV----MGAARPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~----~~~~~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ..++++|||+|.+|+..+.+|.. .+. +|+|+||+  +++++++++    +...... ++++ .+.++|+||+|||.+.
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~e-av~~aDIVi~aT~s~~  195 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APAD-IAAQADIVVTATRSTT  195 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHH-HHHHCSEEEECCCCSS
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHH-HHhhCCEEEEccCCCC
Confidence            46899999999999999999986 466 89999999  888888765    3322222 4444 3467999999999742


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEec-CCCCCHHHHHHHHCC-CceeccHH
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAVY-TPRKTRLLKDAEAAG-AIIVSGVE  423 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~y-~P~~T~ll~~A~~~G-~~~~~Gl~  423 (454)
                       |     .+..++++++..|.|+-. .|....+-.+..+++ ..+++=.+
T Consensus       196 -p-----vl~~~~l~~G~~V~~vGs~~p~~~El~~~~~~~a~~v~vD~~~  239 (313)
T 3hdj_A          196 -P-----LFAGQALRAGAFVGAIGSSLPHTRELDDEALRRARAVVVEWRE  239 (313)
T ss_dssp             -C-----SSCGGGCCTTCEEEECCCSSTTCCCCCHHHHHHCSEEEESCHH
T ss_pred             -c-----ccCHHHcCCCcEEEECCCCCCchhhcCHHHHhcCCEEEECCHH
Confidence             2     356788999999999954 464333323333343 34566444

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=98.45  E-value=5.2e-08  Score=98.04  Aligned_cols=126  Identities=18%  Similarity=0.257  Sum_probs=90.8

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccc---cccccccCCCCccEEEECCCCCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP---FEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~---~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      +..||+|+|||.+|+.++..|++ ..+|++++|+.++++++.+......++   .+.+.+ .++++|+||||+|.-+.  
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~-~~~~~DvVi~~~p~~~~--   90 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVE-VMKEFELVIGALPGFLG--   90 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHH-HHTTCSEEEECCCGGGH--
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHH-HHhCCCEEEEecCCccc--
Confidence            34579999999999999999865 469999999999988775432211122   233444 35678999999985332  


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCC-CHHHHHHHHCCCceeccH-------HHHHHHHHHHHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIVSGV-------EMFLRQAIGQFN  434 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~-T~ll~~A~~~G~~~~~Gl-------~mlv~Qa~~~f~  434 (454)
                         .++...++..+.-++|+.|.+.. -.+-++|+++|+.+++|.       .|+..+++.+|.
T Consensus        91 ---~~v~~~~~~~g~~yvD~s~~~~~~~~l~~~a~~~g~~~i~~~G~~PG~~~~~a~~~~~~~~  151 (365)
T 3abi_A           91 ---FKSIKAAIKSKVDMVDVSFMPENPLELRDEAEKAQVTIVFDAGFAPGLSNILMGRIFQELD  151 (365)
T ss_dssp             ---HHHHHHHHHHTCEEEECCCCSSCGGGGHHHHHHTTCEEECCCBTTTBHHHHHHHHHHHHSC
T ss_pred             ---chHHHHHHhcCcceEeeeccchhhhhhhhhhccCCceeeecCCCCCchHHHHHHHHHHhcc
Confidence               13556678888899999998764 456688999998877543       377777777763

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.33  E-value=5.1e-06  Score=83.24  Aligned_cols=185  Identities=16%  Similarity=0.174  Sum_probs=113.5

Q ss_pred             cCCCceEEecccCCHHHHHHhcC--CCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEeeccHHH
Q 012866          199 VNYNGIYVPMFVDDLKKFFSTYS--SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNTDCEA  276 (454)
Q Consensus       199 ~gl~~~y~~~~~~~~~~~~~~l~--~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~NTD~~G  276 (454)
                      -|+|..=+.+++.+.++|++.++  .+.|.|++.--=-..++++.++++-..    ...            -=+|-|-.|
T Consensus       107 agid~~pi~ldv~~~dE~v~~vk~~~p~f~~i~lED~~~p~af~il~r~r~~----~~I------------pvf~DDiqG  170 (388)
T 1vl6_A          107 ADIDAFPICLSESEEEKIISIVKSLEPSFGGINLEDIGAPKCFRILQRLSEE----MNI------------PVFHDDQQG  170 (388)
T ss_dssp             HCCEEEEEECSCCCHHHHHHHHHHTGGGCSEEEECSCCTTHHHHHHHHHHHH----CSS------------CEEEHHHHH
T ss_pred             cCCceEeEEeCCCCHHHHHHHHHHcCCcceEeCHhhcCCHHHHHHHHHhhhh----cCc------------ceecccccc
Confidence            47885545556668888876663  467899876431123344444433222    111            123344443


Q ss_pred             H----HHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC----HHHH--------
Q 012866          277 S----ITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID----FERA--------  339 (454)
Q Consensus       277 ~----~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt----~~~a--------  339 (454)
                      -    ..++...++.         .+..+++.+++|+|||-+|.+++..|..+|+ +|+++||+    .+|+        
T Consensus       171 TasV~lAal~~A~~i---------~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k  241 (388)
T 1vl6_A          171 TAVVVSAAFLNALKL---------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYH  241 (388)
T ss_dssp             HHHHHHHHHHHHHHH---------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHH
T ss_pred             HHHHHHHHHHHHHHH---------hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHH
Confidence            2    1222222220         1246788999999999999999999999999 99999999    6664        


Q ss_pred             HHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcc---cCCcEEEEEecCCC--CCHHHHHHHHC
Q 012866          340 KSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL---RDYQLVFDAVYTPR--KTRLLKDAEAA  414 (454)
Q Consensus       340 ~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l---~~~~~v~D~~y~P~--~T~ll~~A~~~  414 (454)
                      +.++++.+. .....+|.+ .+.++|++|-+|..+        .+.++++   .++.++||+. +|.  -||  ++|.+.
T Consensus       242 ~~~A~~~~~-~~~~~~L~e-av~~ADVlIG~Sap~--------l~t~emVk~Ma~~pIIfalS-NPt~E~~p--~~a~~~  308 (388)
T 1vl6_A          242 LEIARITNP-ERLSGDLET-ALEGADFFIGVSRGN--------ILKPEWIKKMSRKPVIFALA-NPVPEIDP--ELAREA  308 (388)
T ss_dssp             HHHHHTSCT-TCCCSCHHH-HHTTCSEEEECSCSS--------CSCHHHHTTSCSSCEEEECC-SSSCSSCH--HHHHHT
T ss_pred             HHHHHhhhc-cCchhhHHH-HHccCCEEEEeCCCC--------ccCHHHHHhcCCCCEEEEcC-CCCCCCCH--HHHHHh
Confidence            455555332 123345555 567799999887522        3556554   3567999998 454  466  667776


Q ss_pred             C-Cceecc
Q 012866          415 G-AIIVSG  421 (454)
Q Consensus       415 G-~~~~~G  421 (454)
                      | +.+..|
T Consensus       309 g~~i~atG  316 (388)
T 1vl6_A          309 GAFIVATG  316 (388)
T ss_dssp             TCSEEEES
T ss_pred             cCeEEEeC
Confidence            6 344455

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=98.29  E-value=1.5e-07  Score=99.31  Aligned_cols=81  Identities=17%  Similarity=0.206  Sum_probs=59.3

Q ss_pred             CCeEEEeeccHHHHHHHHHHH-------HH--hcCCCCCCCCCC-CCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEE
Q 012866          264 DGKLIGYNTDCEASITAIEDA-------IK--ERGYKNGTASFG-SPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF  332 (454)
Q Consensus       264 ~g~l~G~NTD~~G~~~~l~~~-------l~--~~~~~~~~~~~~-~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~  332 (454)
                      +|++.|+|||+.|++..++-.       ++  +-+.-+   ..+ ..+++++|+|+|+||.|..++.+|+..|+ +|+|+
T Consensus       281 ~Gkl~g~~tD~~g~l~~~~la~~~~~lnL~lmrwrll~---~~gq~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLv  357 (598)
T 3vh1_A          281 QGKLAPRVVDLSSLLDPLKIADQSVDLNLKLMKWRILP---DLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFV  357 (598)
T ss_dssp             TSSSSCEEEECHHHHCHHHHHHHHHHHHHHHHHHHHCT---TCCHHHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CCCCcceeecchhccCHHHHHHHHHhhhhhhhhhhccc---hhhHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence            799999999999999987510       00  000000   001 24668999999999999999999999999 99999


Q ss_pred             ----------eCCH---------HHHHHHHHHhc
Q 012866          333 ----------DIDF---------ERAKSLASDVM  347 (454)
Q Consensus       333 ----------nRt~---------~~a~~la~~~~  347 (454)
                                +|..         .||+.+++.+.
T Consensus       358 D~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~  391 (598)
T 3vh1_A          358 DNGTVSYSNPVRQALYNFEDCGKPKAELAAASLK  391 (598)
T ss_dssp             CCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHH
T ss_pred             CCCcccccccccccccchhhcCcHHHHHHHHHHH
Confidence                      4543         58888777664

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.28  E-value=1e-05  Score=81.14  Aligned_cols=112  Identities=17%  Similarity=0.184  Sum_probs=83.6

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      +++||+|+|+|+|.+|+.++..|.+.|++|+++||+.+++++++++++...++.+++-   ..++|++|.|..-+.    
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll---~~~~DIvip~a~~~~----  242 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIY---GVTCDIFAPCALGAV----  242 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTT---TCCCSEEEECSCSCC----
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHh---ccCCcEeeccchHHH----
Confidence            5889999999999999999999999999999999999999999999876555444432   246899998753221    


Q ss_pred             CCCCCChh---cccCCcEEEEEecCCCCC-HHHHHHHHCCCceeccHH
Q 012866          380 DRVPVSEE---TLRDYQLVFDAVYTPRKT-RLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       380 ~~~~i~~~---~l~~~~~v~D~~y~P~~T-~ll~~A~~~G~~~~~Gl~  423 (454)
                          +..+   .+ +..+|.+..-.|..+ ...+..+++|+.++++.-
T Consensus       243 ----I~~~~~~~l-g~~iV~e~An~p~t~~ea~~~L~~~Gi~~~Pd~~  285 (364)
T 1leh_A          243 ----LNDFTIPQL-KAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYV  285 (364)
T ss_dssp             ----BSTTHHHHC-CCSEECCSCSCCBSSHHHHHHHHHHTCEECCHHH
T ss_pred             ----hCHHHHHhC-CCcEEEeCCCCCcccHHHHHHHHhCCCEEeccee
Confidence                2222   23 345677777667644 566777888987776554

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.26  E-value=3e-07  Score=75.99  Aligned_cols=94  Identities=16%  Similarity=0.093  Sum_probs=62.0

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhcCCc--ccc---ccccccCCCCccEEEECCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAA--RPF---EDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G-~~v~i~nRt~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~divInat~~g~  375 (454)
                      .+++++|+|+|++|++++..|.+.| .+|++++|+.++++.+. ..+...  .++   +++.+ .+.++|+||+++|...
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-~~~~~~~~~d~~~~~~~~~-~~~~~d~vi~~~~~~~   81 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-RMGVATKQVDAKDEAGLAK-ALGGFDAVISAAPFFL   81 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-TTTCEEEECCTTCHHHHHH-HTTTCSEEEECSCGGG
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-hCCCcEEEecCCCHHHHHH-HHcCCCEEEECCCchh
Confidence            3578999999999999999999999 59999999999988776 222221  122   22333 3467899999986321


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEecCC
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAVYTP  402 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~y~P  402 (454)
                      .     .++.......+.-++|+...+
T Consensus        82 ~-----~~~~~~~~~~g~~~~~~~~~~  103 (118)
T 3ic5_A           82 T-----PIIAKAAKAAGAHYFDLTEDV  103 (118)
T ss_dssp             H-----HHHHHHHHHTTCEEECCCSCH
T ss_pred             h-----HHHHHHHHHhCCCEEEecCcH
Confidence            0     112222344455566655443

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=98.10  E-value=6.5e-05  Score=72.66  Aligned_cols=214  Identities=15%  Similarity=0.211  Sum_probs=129.5

Q ss_pred             EEEecC-CCCcccCHHHHHHHHHhcCCCceEEeccc----CCHHHHHHhc-CCCCCCEEEeccCch-----HHHHhhhhh
Q 012866          176 FGLISK-PVGHSKGPILHNPTFRHVNYNGIYVPMFV----DDLKKFFSTY-SSPDFAGFSVGFPYK-----EAVMKFCDE  244 (454)
Q Consensus       176 ~~liG~-pv~hS~SP~~hn~~f~~~gl~~~y~~~~~----~~~~~~~~~l-~~~~~~G~~VT~P~K-----~~v~~~~d~  244 (454)
                      .-++|+ |-+++. =..-.+..+++|+......++-    +++.+.++.| .++.+.|+-|-.|.-     +.++..+  
T Consensus        58 vIlVG~dpaS~~Y-v~~K~k~c~~vGi~s~~~~lp~~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I--  134 (303)
T 4b4u_A           58 TILVGDDGASATY-VRMKGNACRRVGMDSLKIELPQETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAI--  134 (303)
T ss_dssp             EEEESCCHHHHHH-HHHHHHHHHHTTCEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHS--
T ss_pred             EEEeCCCHHHHHH-HHHHHHHHHHcCCeEEEEecCccCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhcc--
Confidence            456663 433331 1233567899999977666654    2566667666 688999999999963     2233222  


Q ss_pred             cCHh--HhHccceeE--EEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccc-hhHHHHH
Q 012866          245 VHPL--AQAIAAVNT--IIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAG-GAGRALA  319 (454)
Q Consensus       245 ~~~~--A~~igavNT--i~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaG-G~arai~  319 (454)
                       +|.  +.-....|.  +.... .+ +  .-.--.|++..|++             .+.++.||+++|||-+ -.||.++
T Consensus       135 -~p~KDVDG~hp~N~G~L~~g~-~~-~--~PcTp~gv~~lL~~-------------~~i~l~Gk~vvViGRS~iVGkPla  196 (303)
T 4b4u_A          135 -SLAKDVDGVTCLGFGRMAMGE-AA-Y--GSATPAGIMTILKE-------------NNIEIAGKHAVVVGRSAILGKPMA  196 (303)
T ss_dssp             -CGGGCTTCCCHHHHHHHHTTC-CC-C--CCHHHHHHHHHHHH-------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             -CcccccCccCcchHHHhcCCC-Cc-c--cCccHHHHHHHHHH-------------HCCCCCCCEEEEEeccccccchHH
Confidence             211  000000110  00000 00 0  01223567776653             2478999999999977 5599999


Q ss_pred             HHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866          320 FGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       320 ~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      .-|.+.|+.|+++.......+                 + ...++||||.|+..   |.    .+..+|++++.+|+|+-
T Consensus       197 ~LL~~~~ATVTi~Hs~T~dl~-----------------~-~~~~ADIvV~A~G~---p~----~i~~d~vk~GavVIDVG  251 (303)
T 4b4u_A          197 MMLLQANATVTICHSRTQNLP-----------------E-LVKQADIIVGAVGK---AE----LIQKDWIKQGAVVVDAG  251 (303)
T ss_dssp             HHHHHTTCEEEEECTTCSSHH-----------------H-HHHTCSEEEECSCS---TT----CBCGGGSCTTCEEEECC
T ss_pred             HHHHhcCCEEEEecCCCCCHH-----------------H-HhhcCCeEEeccCC---CC----ccccccccCCCEEEEec
Confidence            999999999999875432222                 1 23468999988753   22    47889999999999998


Q ss_pred             cCCCCCHHH-----HHH-HHCCCc--eeccH-----HHHHHHHHHHHHH
Q 012866          400 YTPRKTRLL-----KDA-EAAGAI--IVSGV-----EMFLRQAIGQFNL  435 (454)
Q Consensus       400 y~P~~T~ll-----~~A-~~~G~~--~~~Gl-----~mlv~Qa~~~f~l  435 (454)
                      .++.+-.+.     ..+ +..++.  +-.|.     -||+...+.+.+.
T Consensus       252 in~~~~~~vGDVdf~~v~~~a~~iTPVPGGVGPmTiamLl~Ntv~aa~r  300 (303)
T 4b4u_A          252 FHPRDGGGVGDIQLQGIEEIASAYTPVPGGVGPMTITTLIRQTVEAAEK  300 (303)
T ss_dssp             CBCCTTSCBCSBCCTTGGGTCSEECCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             eecCCCCeECCcCHHHHhhhCcEECCCCCCchHHHHHHHHHHHHHHHHH
Confidence            887543221     122 233442  22344     5888887777664

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.09  E-value=5.8e-06  Score=83.49  Aligned_cols=99  Identities=19%  Similarity=0.253  Sum_probs=71.9

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-c---ccccccccCCCCccEEEECCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-R---PFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~---~~~~l~~~~~~~~divInat~~g~  375 (454)
                      .+.+++|+|+|+|++|++++..++.+|++|++++|+.++.+.+.+.++... .   ..+++.+ .+.++|+||+|++...
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~-~l~~aDvVi~~~~~p~  243 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEG-AVKRADLVIGAVLVPG  243 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHH-HHHHCSEEEECCCCTT
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHH-HHcCCCEEEECCCcCC
Confidence            367899999999999999999999999999999999999888777666532 1   1223333 2356899999987543


Q ss_pred             CCCCCCCCCChh---cccCCcEEEEEecC
Q 012866          376 HPNTDRVPVSEE---TLRDYQLVFDAVYT  401 (454)
Q Consensus       376 ~p~~~~~~i~~~---~l~~~~~v~D~~y~  401 (454)
                      . . ....+..+   .++++.+++|+...
T Consensus       244 ~-~-t~~li~~~~l~~mk~g~~iV~va~~  270 (377)
T 2vhw_A          244 A-K-APKLVSNSLVAHMKPGAVLVDIAID  270 (377)
T ss_dssp             S-C-CCCCBCHHHHTTSCTTCEEEEGGGG
T ss_pred             C-C-CcceecHHHHhcCCCCcEEEEEecC
Confidence            2 1 11223433   35678899999853

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.08  E-value=4.5e-06  Score=84.46  Aligned_cols=98  Identities=21%  Similarity=0.228  Sum_probs=69.7

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc----------------------
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED----------------------  355 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~~----------------------  355 (454)
                      .+.+++|+|+|+|++|++++..+..+|++|++++|+.++.+.+.+ ++....  +.++                      
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~-~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES-LGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH-TTCEECCC-----------------------CCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            357899999999999999999999999999999999988776644 665332  1110                      


Q ss_pred             ---ccccCCCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecC
Q 012866          356 ---ILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYT  401 (454)
Q Consensus       356 ---l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~  401 (454)
                         +.+ ...++|+||+|+.....+.  +..+..+   .++++.+++|+.+.
T Consensus       248 ~~~l~~-~~~~aDvVi~~~~~pg~~~--~~li~~~~l~~mk~g~vivdva~~  296 (384)
T 1l7d_A          248 AEAVLK-ELVKTDIAITTALIPGKPA--PVLITEEMVTKMKPGSVIIDLAVE  296 (384)
T ss_dssp             HHHHHH-HHTTCSEEEECCCCTTSCC--CCCSCHHHHTTSCTTCEEEETTGG
T ss_pred             HHHHHH-HhCCCCEEEECCccCCCCC--CeeeCHHHHhcCCCCCEEEEEecC
Confidence               333 3457999999995522221  1234433   35788999999974

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.05  E-value=5.5e-06  Score=83.24  Aligned_cols=98  Identities=19%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc-----------------------cccc
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF-----------------------EDIL  357 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~-----------------------~~l~  357 (454)
                      +.+++|+|+|+|.+|+.++..+..+|++|++++|+.++.+.+.+ +|.....+                       +.+.
T Consensus       182 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          182 VKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS-VGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             ECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH-TTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             cCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-cCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            56789999999999999999999999999999999998887755 55433221                       1233


Q ss_pred             ccCCCCccEEEECCCCCCCCCCCCCCCChhc---ccCCcEEEEEecCC
Q 012866          358 NFQPEKGAILANATPLGMHPNTDRVPVSEET---LRDYQLVFDAVYTP  402 (454)
Q Consensus       358 ~~~~~~~divInat~~g~~p~~~~~~i~~~~---l~~~~~v~D~~y~P  402 (454)
                      + .+.++|+||+|....-.+  .+..+..+.   ++++.+++|+.-.+
T Consensus       261 e-~l~~aDIVI~tv~iPg~~--ap~Lvt~emv~~MkpGsVIVDvA~d~  305 (381)
T 3p2y_A          261 D-AITKFDIVITTALVPGRP--APRLVTAAAATGMQPGSVVVDLAGET  305 (381)
T ss_dssp             H-HHTTCSEEEECCCCTTSC--CCCCBCHHHHHTSCTTCEEEETTGGG
T ss_pred             H-HHhcCCEEEECCCCCCcc--cceeecHHHHhcCCCCcEEEEEeCCC
Confidence            3 457899999986331111  122355554   56889999997543

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=97.98  E-value=4.2e-06  Score=81.95  Aligned_cols=114  Identities=16%  Similarity=0.091  Sum_probs=77.9

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ...+++.|||.|.+|++++..|.+.|++|+++||++++++++++. +...  ..++.+ ...++|+||.++|....  ..
T Consensus         7 ~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~e-~~~~aDvVi~~vp~~~~--~~   80 (306)
T 3l6d_A            7 SFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAA-GAHL--CESVKA-ALSASPATIFVLLDNHA--TH   80 (306)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHH-TCEE--CSSHHH-HHHHSSEEEECCSSHHH--HH
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHC-CCee--cCCHHH-HHhcCCEEEEEeCCHHH--HH
Confidence            345789999999999999999999999999999999999988765 3321  122222 23468999999985320  00


Q ss_pred             CCCCC---hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCceecc
Q 012866          381 RVPVS---EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIVSG  421 (454)
Q Consensus       381 ~~~i~---~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~~G  421 (454)
                      . .+.   ...+.++.+++|+.-.+..+  .+.+..++.|+.++++
T Consensus        81 ~-v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda  125 (306)
T 3l6d_A           81 E-VLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG  125 (306)
T ss_dssp             H-HHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             H-HhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec
Confidence            0 011   12245788999998765433  3445566778776553

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.94  E-value=1.2e-05  Score=80.79  Aligned_cols=100  Identities=20%  Similarity=0.237  Sum_probs=68.0

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----cccccccccCCCCccEEEECCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      .+++++|+|+|+|++|++++..++.+|++|++++|+.++.+.+.+.++...    .+.+++.+ .+.++|+||+|++...
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~-~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKK-SVQHADLLIGAVLVPG  241 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHH-HHHHCSEEEECCC---
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHH-HHhCCCEEEECCCCCc
Confidence            367899999999999999999999999999999999999888776665431    01223333 2356899999997542


Q ss_pred             CCCCCCCCCChh---cccCCcEEEEEecCC
Q 012866          376 HPNTDRVPVSEE---TLRDYQLVFDAVYTP  402 (454)
Q Consensus       376 ~p~~~~~~i~~~---~l~~~~~v~D~~y~P  402 (454)
                      ..  ....+..+   .++++.+++|+...+
T Consensus       242 ~~--~~~li~~~~l~~mk~gg~iV~v~~~~  269 (369)
T 2eez_A          242 AK--APKLVTRDMLSLMKEGAVIVDVAVDQ  269 (369)
T ss_dssp             ------CCSCHHHHTTSCTTCEEEECC---
T ss_pred             cc--cchhHHHHHHHhhcCCCEEEEEecCC
Confidence            11  11123333   356778899998754

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.93  E-value=4e-06  Score=82.05  Aligned_cols=109  Identities=16%  Similarity=0.261  Sum_probs=74.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      ++|-+||-|-||.+++..|.+.|++|++|||++++++++.+. +... .+..+    ....+|+||.+.|-+-  .....
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~-Ga~~a~s~~e----~~~~~dvv~~~l~~~~--~v~~V   76 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAA-GASAARSARD----AVQGADVVISMLPASQ--HVEGL   76 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT-TCEECSSHHH----HHTTCSEEEECCSCHH--HHHHH
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHc-CCEEcCCHHH----HHhcCCceeecCCchH--HHHHH
Confidence            589999999999999999999999999999999999999765 3322 12222    2356899998876421  11110


Q ss_pred             CCC----hhcccCCcEEEEEecC-CCCC-HHHHHHHHCCCcee
Q 012866          383 PVS----EETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       383 ~i~----~~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~  419 (454)
                      ...    .+.++++.+++|+.-. |..+ .+-++++++|+.++
T Consensus        77 ~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~l  119 (300)
T 3obb_A           77 YLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  119 (300)
T ss_dssp             HHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            001    1235678999999876 4433 34455666787654

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.89  E-value=1.6e-05  Score=77.57  Aligned_cols=112  Identities=10%  Similarity=0.013  Sum_probs=75.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      ..++.|||+|.+|.+++..|.+.|.+|+++||++++++++.+. +... ...++.+ ...++|+||.|+|....  ....
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~-~~~~~~e-~~~~aDvvi~~vp~~~~--~~~v   81 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAE-GACG-AAASARE-FAGVVDALVILVVNAAQ--VRQV   81 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCSE-EESSSTT-TTTTCSEEEECCSSHHH--HHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc-CCcc-ccCCHHH-HHhcCCEEEEECCCHHH--HHHH
Confidence            4689999999999999999999999999999999999988764 3221 0233434 45678999999985311  0000


Q ss_pred             CC--C--hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCcee
Q 012866          383 PV--S--EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIV  419 (454)
Q Consensus       383 ~i--~--~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~  419 (454)
                      .+  .  ...++++.+++|..-.+..+  .+.+..++.|+.++
T Consensus        82 ~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~  124 (303)
T 3g0o_A           82 LFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNML  124 (303)
T ss_dssp             HC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEE
Confidence            00  0  13466788999998654432  23344555676543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.88  E-value=1.1e-05  Score=79.55  Aligned_cols=112  Identities=17%  Similarity=0.167  Sum_probs=76.2

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      ...++.|||+|.+|++++..|.+.|++|+++||++++++++++. +...  ..++.+ ...++|+||.|+|....  ...
T Consensus        30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~~~~e-~~~~aDvVi~~vp~~~~--~~~  103 (320)
T 4dll_A           30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAAL-GATI--HEQARA-AARDADIVVSMLENGAV--VQD  103 (320)
T ss_dssp             CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-TCEE--ESSHHH-HHTTCSEEEECCSSHHH--HHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHC-CCEe--eCCHHH-HHhcCCEEEEECCCHHH--HHH
Confidence            45689999999999999999999999999999999999988764 3221  123333 34568999999984210  000


Q ss_pred             CCC--C-hhcccCCcEEEEEecCCCC-C-HHHHHHHHCCCcee
Q 012866          382 VPV--S-EETLRDYQLVFDAVYTPRK-T-RLLKDAEAAGAIIV  419 (454)
Q Consensus       382 ~~i--~-~~~l~~~~~v~D~~y~P~~-T-~ll~~A~~~G~~~~  419 (454)
                      ...  . ...+.++.+++|+...+.. + .+.+..+++|..++
T Consensus       104 v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~  146 (320)
T 4dll_A          104 VLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHL  146 (320)
T ss_dssp             HHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEE
Confidence            000  1 1235678899999876543 3 33345566777655

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=97.87  E-value=1.8e-05  Score=80.08  Aligned_cols=97  Identities=19%  Similarity=0.152  Sum_probs=69.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc---------------------------
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF---------------------------  353 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~---------------------------  353 (454)
                      +.+.+|+|+|+|.+|+.++..+..+|++|++++|+.++.+.+.+ ++...+..                           
T Consensus       188 v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~-~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          188 VPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS-LGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH-TTCEECCCCC-----------------CHHHHHHH
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH-cCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            46789999999999999999999999999999999998776654 55532221                           


Q ss_pred             ccccccCCCCccEEEECCCCCCCCCCCCCCCChhc---ccCCcEEEEEecC
Q 012866          354 EDILNFQPEKGAILANATPLGMHPNTDRVPVSEET---LRDYQLVFDAVYT  401 (454)
Q Consensus       354 ~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~---l~~~~~v~D~~y~  401 (454)
                      +.+.+ .+.++|+||+|....-.  ..+..+..+.   ++++.+++|+.-.
T Consensus       267 ~~l~e-~l~~aDVVI~tvlipg~--~ap~Lvt~emv~~Mk~GsVIVDvA~d  314 (405)
T 4dio_A          267 ALVAE-HIAKQDIVITTALIPGR--PAPRLVTREMLDSMKPGSVVVDLAVE  314 (405)
T ss_dssp             HHHHH-HHHTCSEEEECCCCSSS--CCCCCBCHHHHTTSCTTCEEEETTGG
T ss_pred             hHHHH-HhcCCCEEEECCcCCCC--CCCEEecHHHHhcCCCCCEEEEEeCC
Confidence            11222 34679999998632111  1122356554   5688999999853

>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}

Probab=97.87  E-value=2.7e-05  Score=75.00  Aligned_cols=75  Identities=23%  Similarity=0.239  Sum_probs=58.4

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc----cccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR----PFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~----~~~~---l~~~------~~~~~d  365 (454)
                      .++||.+||.|++ |+|++++..|++.|++|.+++|+.+++++++++++....    ++.+   ++.+      ...+.|
T Consensus        26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD  105 (273)
T 4fgs_A           26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGGGAVGIQADSANLAELDRLYEKVKAEAGRID  105 (273)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred             hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            3789999999975 999999999999999999999999999999999976432    2211   1110      124679


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||....+
T Consensus       106 iLVNNAG~~  114 (273)
T 4fgs_A          106 VLFVNAGGG  114 (273)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987643

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=97.86  E-value=1.3e-06  Score=89.70  Aligned_cols=104  Identities=16%  Similarity=0.152  Sum_probs=70.0

Q ss_pred             hHhHccceeEEEEeCCCCeEEEeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC
Q 012866          248 LAQAIAAVNTIIRRPSDGKLIGYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA  327 (454)
Q Consensus       248 ~A~~igavNTi~~~~~~g~l~G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~  327 (454)
                      ..+++|+||||+.+  +|++.|     .||...++.. .            ..+++++|+|+|+||.|..++..|+..|+
T Consensus         5 ~~~r~~~vntl~~~--~g~~~g-----~gf~~g~e~~-~------------~~L~~~~VlvvG~GGlGs~va~~La~aGv   64 (434)
T 1tt5_B            5 WEGRWNHVKKFLER--SGPFTH-----PDFEPSTESL-Q------------FLLDTCKVLVIGAGGLGCELLKNLALSGF   64 (434)
T ss_dssp             CTTTTHHHHHHHHS--CCSSCC-----TTCCCCSSHH-H------------HHHHTCCEEEECSSTHHHHHHHHHHHTTC
T ss_pred             hhhhhccceEEEcC--CCcccc-----cccccCHHHH-H------------HHhcCCEEEEECcCHHHHHHHHHHHHcCC
Confidence            45688999999987  788776     5554433221 0            11346899999999999999999999999


Q ss_pred             -eEEEE----------eCCH---------HHHHHHHHHhcC--Ccccc----ccccc---cCCCCccEEEECC
Q 012866          328 -RVVIF----------DIDF---------ERAKSLASDVMG--AARPF----EDILN---FQPEKGAILANAT  371 (454)
Q Consensus       328 -~v~i~----------nRt~---------~~a~~la~~~~~--~~~~~----~~l~~---~~~~~~divInat  371 (454)
                       +|+|+          ||..         .||+.+++.+..  ..+.+    ..+.+   ....++|+||+|+
T Consensus        65 g~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~~~~i~~~~~~~~~~~DlVi~~~  137 (434)
T 1tt5_B           65 RQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVCGL  137 (434)
T ss_dssp             CCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEEESCGGGBCHHHHTTCSEEEECC
T ss_pred             CEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEEecccchhhHHHhcCCCEEEECC
Confidence             99999          4542         477777665532  01111    11111   0246789999986

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.82  E-value=1.7e-05  Score=79.12  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=79.7

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+....+. +...+....  +++++ .+.++|+|+.++|..  |.
T Consensus       160 ~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~-~~~~g~~~~--~~l~e-ll~~aDvV~l~~Plt--~~  233 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPEL-EKETGAKFV--EDLNE-MLPKCDVIVINMPLT--EK  233 (351)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHH-HHHHCCEEC--SCHHH-HGGGCSEEEECSCCC--TT
T ss_pred             ccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHH-HHhCCCeEc--CCHHH-HHhcCCEEEECCCCC--HH
Confidence            5688999999999999999999999999999999998644333 334444322  23333 346789999999974  22


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHH
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~  423 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|...--|++
T Consensus       234 t~-~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lD  281 (351)
T 3jtm_A          234 TR-GMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGD  281 (351)
T ss_dssp             TT-TCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEES
T ss_pred             HH-HhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeC
Confidence            22 235544   3567888888876543 55555666655543333444

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.82  E-value=6.9e-06  Score=78.12  Aligned_cols=71  Identities=18%  Similarity=0.320  Sum_probs=54.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH-------------------HHHHHHHHHhcC---C--ccc---
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF-------------------ERAKSLASDVMG---A--ARP---  352 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~-------------------~~a~~la~~~~~---~--~~~---  352 (454)
                      +++++|+|+|+||+|..++..|+..|+ +|+|++++.                   .|++.+++.+..   .  ...   
T Consensus        29 l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  108 (249)
T 1jw9_B           29 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPVNA  108 (249)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEEec
Confidence            456899999999999999999999999 999999998                   899888877642   1  101   


Q ss_pred             -cc--cccccCCCCccEEEECCC
Q 012866          353 -FE--DILNFQPEKGAILANATP  372 (454)
Q Consensus       353 -~~--~l~~~~~~~~divInat~  372 (454)
                       ++  ++.+ .+.++|+||+||.
T Consensus       109 ~~~~~~~~~-~~~~~DvVi~~~d  130 (249)
T 1jw9_B          109 LLDDAELAA-LIAEHDLVLDCTD  130 (249)
T ss_dssp             CCCHHHHHH-HHHTSSEEEECCS
T ss_pred             cCCHhHHHH-HHhCCCEEEEeCC
Confidence             11  1222 2357899999985

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.82  E-value=2.1e-05  Score=80.07  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=69.1

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccc-------------------------c
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE-------------------------D  355 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~-------------------------~  355 (454)
                      +.+++|+|+|+|++|++++..+..+|++|++++|+.++.+.+ +.++...+.++                         .
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          170 VPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQV-QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHH-HHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHH-HHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            568999999999999999999999999999999999988776 55665433211                         1


Q ss_pred             ccccCCCCccEEEECCCC-CCCCCCCCCCCChh---cccCCcEEEEEecC
Q 012866          356 ILNFQPEKGAILANATPL-GMHPNTDRVPVSEE---TLRDYQLVFDAVYT  401 (454)
Q Consensus       356 l~~~~~~~~divInat~~-g~~p~~~~~~i~~~---~l~~~~~v~D~~y~  401 (454)
                      +.+ ...++|+||+++.. |..   .+..+..+   .++++.+++|+.+.
T Consensus       249 l~e-~~~~aDvVI~~~~~pg~~---ap~li~~~~l~~mk~g~vIVdva~~  294 (401)
T 1x13_A          249 FAA-QAKEVDIIVTTALIPGKP---APKLITREMVDSMKAGSVIVDLAAQ  294 (401)
T ss_dssp             HHH-HHHHCSEEEECCCCTTSC---CCCCBCHHHHHTSCTTCEEEETTGG
T ss_pred             HHH-HhCCCCEEEECCccCCCC---CCeeeCHHHHhcCCCCcEEEEEcCC
Confidence            322 23468999999644 421   11234433   35788999999864

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.81  E-value=4.3e-05  Score=64.72  Aligned_cols=118  Identities=17%  Similarity=0.204  Sum_probs=73.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--c---cccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--P---FEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~---~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +.+++|+|+|.+|+.++..|.+.|.+|++++|++++++.+.+.++....  +   .+.+......++|+||.+++.... 
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~-   82 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV-   82 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchH-
Confidence            4689999999999999999999999999999999999888766543221  1   112222135679999999874210 


Q ss_pred             CCCCCCCC--hhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHH
Q 012866          378 NTDRVPVS--EETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQ  428 (454)
Q Consensus       378 ~~~~~~i~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Q  428 (454)
                        + ..+.  ...+.+..++. ...+|...   +..++.|...+---+.+..+
T Consensus        83 --~-~~~~~~~~~~~~~~ii~-~~~~~~~~---~~l~~~g~~~v~~p~~~~~~  128 (140)
T 1lss_A           83 --N-LMSSLLAKSYGINKTIA-RISEIEYK---DVFERLGVDVVVSPELIAAN  128 (140)
T ss_dssp             --H-HHHHHHHHHTTCCCEEE-ECSSTTHH---HHHHHTTCSEEECHHHHHHH
T ss_pred             --H-HHHHHHHHHcCCCEEEE-EecCHhHH---HHHHHcCCCEEECHHHHHHH
Confidence              0 0000  01134455554 44455443   45567887644434444433

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=97.80  E-value=1.1e-05  Score=79.73  Aligned_cols=109  Identities=15%  Similarity=0.176  Sum_probs=70.6

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ...+.|+++.|||.|.+|++++..|...|++|+.++|+.+..+.+    . ......++++ .+.++|+|+.++|..  +
T Consensus       135 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~----~-~~~~~~~l~e-ll~~aDvV~l~lPlt--~  206 (324)
T 3hg7_A          135 YQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGF----D-QVYQLPALNK-MLAQADVIVSVLPAT--R  206 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTC----S-EEECGGGHHH-HHHTCSEEEECCCCC--S
T ss_pred             CcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhh----h-cccccCCHHH-HHhhCCEEEEeCCCC--H
Confidence            356889999999999999999999999999999999986432211    0 0112233433 345789999999864  2


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       207 ~T~-~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  247 (324)
T 3hg7_A          207 ETH-HLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTG  247 (324)
T ss_dssp             SST-TSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             HHH-HHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcC
Confidence            211 123332   3456777777765533 455455555544

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.80  E-value=1.1e-05  Score=78.12  Aligned_cols=109  Identities=19%  Similarity=0.113  Sum_probs=72.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      +++.|||+|.+|++++..|.+.|++|++++|++++++++.+. +...  ..++.+ ...++|+||.|+|....  .....
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~~aDvvi~~vp~~~~--~~~v~   75 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAAL-GAER--AATPCE-VVESCPVTFAMLADPAA--AEEVC   75 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT-TCEE--CSSHHH-HHHHCSEEEECCSSHHH--HHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCee--cCCHHH-HHhcCCEEEEEcCCHHH--HHHHH
Confidence            579999999999999999999999999999999999888764 2221  122222 23458999999984210  00000


Q ss_pred             C--C--hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCce
Q 012866          384 V--S--EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAII  418 (454)
Q Consensus       384 i--~--~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~  418 (454)
                      +  .  ...++++.+++|....+..+  .+.+..+++|+.+
T Consensus        76 ~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~  116 (287)
T 3pef_A           76 FGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRF  116 (287)
T ss_dssp             HSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             cCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEE
Confidence            0  1  12356788999997654432  2334556667654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=97.78  E-value=0.00066  Score=67.60  Aligned_cols=130  Identities=24%  Similarity=0.292  Sum_probs=90.6

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCC-CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGS-PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR  351 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~-~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~  351 (454)
                      -+.|.+..++..+.+.         +. +++||++.|+|.|.+|+.++..|.++|++|++++++.++ ++.+++++...+
T Consensus       153 Tg~Gv~~~~~~~~~~~---------G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~-~~~a~~~ga~~v  222 (355)
T 1c1d_A          153 TAVGVFEAMKATVAHR---------GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER-VAHAVALGHTAV  222 (355)
T ss_dssp             HHHHHHHHHHHHHHHT---------TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH-HHHHHHTTCEEC
T ss_pred             HHHHHHHHHHHHHHhc---------CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH-HHHHHhcCCEEe
Confidence            3567777777766532         34 689999999999999999999999999999999999877 667777765544


Q ss_pred             ccccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc--CCcEEEEEecCCCCC-HHHHHHHHCCCceeccHH
Q 012866          352 PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKT-RLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       352 ~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T-~ll~~A~~~G~~~~~Gl~  423 (454)
                      +.+++-.   ..+|+++.|.--+        .+..+.+.  +..++++..-.|... .-.+.-+++|+.++++.-
T Consensus       223 ~~~ell~---~~~DIliP~A~~~--------~I~~~~~~~lk~~iVie~AN~p~t~~eA~~~L~~~gIlv~Pd~~  286 (355)
T 1c1d_A          223 ALEDVLS---TPCDVFAPCAMGG--------VITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDFV  286 (355)
T ss_dssp             CGGGGGG---CCCSEEEECSCSC--------CBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCHHH
T ss_pred             ChHHhhc---CccceecHhHHHh--------hcCHHHHhhCCCCEEEECCCCCCCCHHHHHHHHhCCEEEECCeE
Confidence            4444321   3689998753211        24443221  356788887667543 445566678887776654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.77  E-value=0.00012  Score=74.33  Aligned_cols=91  Identities=18%  Similarity=0.139  Sum_probs=63.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|++++|+|.|.+|++++..|...|++|++++|++.++.+. ...+....+++   + .+..+|+||.|+.  ..  
T Consensus       216 ~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A-~~~G~~v~~Le---e-al~~ADIVi~atg--t~--  286 (435)
T 3gvp_A          216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQA-CMDGFRLVKLN---E-VIRQVDIVITCTG--NK--  286 (435)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEECCHH---H-HTTTCSEEEECSS--CS--
T ss_pred             ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHH-HHcCCEeccHH---H-HHhcCCEEEECCC--Cc--
Confidence            56889999999999999999999999999999999998876543 33343333333   3 3567899998742  11  


Q ss_pred             CCCCCCChhc---ccCCcEEEEEecC
Q 012866          379 TDRVPVSEET---LRDYQLVFDAVYT  401 (454)
Q Consensus       379 ~~~~~i~~~~---l~~~~~v~D~~y~  401 (454)
                         ..+..+.   ++++.+++++...
T Consensus       287 ---~lI~~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          287 ---NVVTREHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             ---CSBCHHHHHHSCTTEEEEECSST
T ss_pred             ---ccCCHHHHHhcCCCcEEEEecCC
Confidence               1244332   3556666666544

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.76  E-value=1.2e-05  Score=80.47  Aligned_cols=113  Identities=18%  Similarity=0.257  Sum_probs=74.6

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .++.++.|||.|.+|++++..|.+.|++|+++||+.++++++.+. +... .+.+++.. ....+|+||.++|.+.   .
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~-g~~~~~s~~e~~~-~a~~~DvVi~~vp~~~---v   94 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALERE-GIAGARSIEEFCA-KLVKPRVVWLMVPAAV---V   94 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTT-TCBCCSSHHHHHH-HSCSSCEEEECSCGGG---H
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC-CCEEeCCHHHHHh-cCCCCCEEEEeCCHHH---H
Confidence            456789999999999999999999999999999999999888654 3221 12333221 1233499999998651   1


Q ss_pred             CCCCCC--hhcccCCcEEEEEecCCC-CC-HHHHHHHHCCCcee
Q 012866          380 DRVPVS--EETLRDYQLVFDAVYTPR-KT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       380 ~~~~i~--~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~~~~  419 (454)
                      .. .+.  ...++++.+++|..-.+. .+ .+.++.+++|+.++
T Consensus        95 ~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~v  137 (358)
T 4e21_A           95 DS-MLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYV  137 (358)
T ss_dssp             HH-HHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HH-HHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEE
Confidence            11 111  123567899999986643 22 33445556776543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=97.76  E-value=1.8e-05  Score=74.85  Aligned_cols=96  Identities=17%  Similarity=0.146  Sum_probs=63.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH--------------HHHHHHHhcCCccccccccccCCCCc
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER--------------AKSLASDVMGAARPFEDILNFQPEKG  364 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~--------------a~~la~~~~~~~~~~~~l~~~~~~~~  364 (454)
                      ..+.++++.|||+|.+|.+++..|.+.|.+|++++|++++              ++++++.++..  ...+..+ .+.++
T Consensus        15 ~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e-~~~~a   91 (245)
T 3dtt_A           15 LYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHV--HLAAFAD-VAAGA   91 (245)
T ss_dssp             ----CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTC--EEEEHHH-HHHHC
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCce--eccCHHH-HHhcC
Confidence            4567899999999999999999999999999999999998              45555444321  1222222 23568


Q ss_pred             cEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866          365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       365 divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      |+||.|+|.......- ..+....+ ++.+++|+.
T Consensus        92 DvVilavp~~~~~~~~-~~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           92 ELVVNATEGASSIAAL-TAAGAENL-AGKILVDIA  124 (245)
T ss_dssp             SEEEECSCGGGHHHHH-HHHCHHHH-TTSEEEECC
T ss_pred             CEEEEccCcHHHHHHH-HHhhhhhc-CCCEEEECC
Confidence            9999999864321100 00111234 678999998

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.76  E-value=4.8e-05  Score=74.74  Aligned_cols=110  Identities=19%  Similarity=0.278  Sum_probs=77.9

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|+++.|||.|.+|++++..|...|++|++++|+.++.+  +..++....+++   + .+.++|+|+.++|..-  
T Consensus       137 ~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~g~~~~~l~---e-ll~~aDvVvl~~P~~~--  208 (313)
T 2ekl_A          137 GLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREK--AEKINAKAVSLE---E-LLKNSDVISLHVTVSK--  208 (313)
T ss_dssp             CCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHH--HHHTTCEECCHH---H-HHHHCSEEEECCCCCT--
T ss_pred             CCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhH--HHhcCceecCHH---H-HHhhCCEEEEeccCCh--
Confidence            3468899999999999999999999999999999999987642  455554332333   3 2356899999998642  


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCC
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGA  416 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~  416 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|.
T Consensus       209 ~t~-~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~  250 (313)
T 2ekl_A          209 DAK-PIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGK  250 (313)
T ss_dssp             TSC-CSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTC
T ss_pred             HHH-HhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCC
Confidence            221 234443   4678899999987644 4555555655543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.76  E-value=6.5e-05  Score=74.50  Aligned_cols=108  Identities=19%  Similarity=0.179  Sum_probs=74.9

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|+..|++|+.++|+.++.  .+..++....+++   + .+.++|+|+.++|..-  .
T Consensus       161 ~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~~~l~---e-ll~~aDvV~l~~P~t~--~  232 (335)
T 2g76_A          161 TELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE--VSASFGVQQLPLE---E-IWPLCDFITVHTPLLP--S  232 (335)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH--HHHHTTCEECCHH---H-HGGGCSEEEECCCCCT--T
T ss_pred             cCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hhhhcCceeCCHH---H-HHhcCCEEEEecCCCH--H
Confidence            46889999999999999999999999999999999987652  3445554332333   3 3457899999999752  2


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       233 t~-~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g  272 (335)
T 2g76_A          233 TT-GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG  272 (335)
T ss_dssp             TT-TSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             HH-HhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhC
Confidence            11 234433   3567888888887654 444444444443

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.75  E-value=2.7e-05  Score=78.07  Aligned_cols=109  Identities=18%  Similarity=0.169  Sum_probs=72.7

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|+++.|||.|.+|++++..|+..|++|..++|+... + .+...+....++++    .+.++|+|+.++|..  +
T Consensus       171 ~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~-~-~~~~~g~~~~~l~e----ll~~aDvV~l~~Plt--~  242 (365)
T 4hy3_A          171 ARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPR-S-MLEENGVEPASLED----VLTKSDFIFVVAAVT--S  242 (365)
T ss_dssp             CCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCH-H-HHHHTTCEECCHHH----HHHSCSEEEECSCSS--C
T ss_pred             ccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCH-H-HHhhcCeeeCCHHH----HHhcCCEEEEcCcCC--H
Confidence            35688999999999999999999999999999999998533 2 22334443333333    345789999999875  2


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       243 ~T~-~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  283 (365)
T 4hy3_A          243 ENK-RFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSG  283 (365)
T ss_dssp             C----CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTT
T ss_pred             HHH-hhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcC
Confidence            222 235544   3577888888874432 344444444443

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=97.75  E-value=4.4e-06  Score=82.53  Aligned_cols=110  Identities=22%  Similarity=0.263  Sum_probs=72.7

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ...+.|+++.|||.|.+|++++..|...|++|+.++|+.+..+.+..     .....++.+ .+.++|+|+.++|..-  
T Consensus       132 ~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~-----~~~~~~l~e-ll~~aDvV~l~lPlt~--  203 (324)
T 3evt_A          132 TSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHE-----TVAFTATAD-ALATANFIVNALPLTP--  203 (324)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSE-----EEEGGGCHH-HHHHCSEEEECCCCCG--
T ss_pred             CccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhh-----ccccCCHHH-HHhhCCEEEEcCCCch--
Confidence            35688999999999999999999999999999999998655322111     112233433 3456899999998642  


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCC
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGA  416 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~  416 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|.
T Consensus       204 ~t~-~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  245 (324)
T 3evt_A          204 TTH-HLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQ  245 (324)
T ss_dssp             GGT-TCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTS
T ss_pred             HHH-HhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCC
Confidence            211 234443   3567778888776543 4555555555443

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.75  E-value=4.2e-05  Score=75.00  Aligned_cols=108  Identities=21%  Similarity=0.275  Sum_probs=76.5

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++ + .+.+++....+++   + .+.++|+|+.++|..-  .
T Consensus       138 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~-~-~~~~~g~~~~~l~---e-ll~~aDvV~l~~p~~~--~  209 (307)
T 1wwk_A          138 IELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNE-E-RAKEVNGKFVDLE---T-LLKESDVVTIHVPLVE--S  209 (307)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-H-HHHHTTCEECCHH---H-HHHHCSEEEECCCCST--T
T ss_pred             cccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCCh-h-hHhhcCccccCHH---H-HHhhCCEEEEecCCCh--H
Confidence            4688999999999999999999999999999999999876 2 3445554333333   3 2356899999998742  2


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       210 t~-~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g  249 (307)
T 1wwk_A          210 TY-HLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEG  249 (307)
T ss_dssp             TT-TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             Hh-hhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence            11 235433   4678899999988754 444445554444

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.72  E-value=5.4e-06  Score=80.94  Aligned_cols=109  Identities=18%  Similarity=0.189  Sum_probs=67.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      +||-+||.|-||.+++..|.+.|++|++|||++++++++++. +...  .+...+ ....+|+||.+.|.+...  .. .
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~-G~~~--~~s~~e-~~~~~dvvi~~l~~~~~~--~~-v   78 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKL-GATV--VENAID-AITPGGIVFSVLADDAAV--EE-L   78 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTT-TCEE--CSSGGG-GCCTTCEEEECCSSHHHH--HH-H
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHc-CCeE--eCCHHH-HHhcCCceeeeccchhhH--HH-H
Confidence            579999999999999999999999999999999998877543 2221  223333 356789999887742110  00 1


Q ss_pred             CCh---hcccCCcEEEEEecC-CCCC-HHHHHHHHCCCcee
Q 012866          384 VSE---ETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       384 i~~---~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~  419 (454)
                      +..   ..+.++.+++|+.-. |..| .+-+.++++|+.++
T Consensus        79 ~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~l  119 (297)
T 4gbj_A           79 FSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYV  119 (297)
T ss_dssp             SCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCcee
Confidence            222   235678899999876 4333 34455667776544

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.72  E-value=3.4e-05  Score=77.00  Aligned_cols=95  Identities=17%  Similarity=0.152  Sum_probs=66.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|+..|++|+.++|+...  +.+...+....  +++++ .+.++|+|+.++|..  +.
T Consensus       156 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~--~~l~e-ll~~aDiV~l~~Plt--~~  228 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSK--ERARADGFAVA--ESKDA-LFEQSDVLSVHLRLN--DE  228 (352)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHH--HHHHHTTCEEC--SSHHH-HHHHCSEEEECCCCS--TT
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCH--HHHHhcCceEe--CCHHH-HHhhCCEEEEeccCc--HH
Confidence            5688999999999999999999999999999999998643  22334444332  23333 245689999999864  22


Q ss_pred             CCCCCCChh---cccCCcEEEEEecC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYT  401 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~  401 (454)
                      +. ..+..+   .++++.+++|+.-.
T Consensus       229 t~-~li~~~~l~~mk~gailIN~aRg  253 (352)
T 3gg9_A          229 TR-SIITVADLTRMKPTALFVNTSRA  253 (352)
T ss_dssp             TT-TCBCHHHHTTSCTTCEEEECSCG
T ss_pred             HH-HhhCHHHHhhCCCCcEEEECCCc
Confidence            22 234443   35677778777644

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.72  E-value=9.7e-05  Score=73.24  Aligned_cols=96  Identities=15%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.++++.|||.|.+|++++..|+..|++|++++|+.++  +.+..++...   .++.+ .+.++|+|+.++|....  
T Consensus       146 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~---~~l~~-~l~~aDvVil~vp~~~~--  217 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE--EVERELNAEF---KPLED-LLRESDFVVLAVPLTRE--  217 (334)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHHHCCEE---CCHHH-HHHHCSEEEECCCCCTT--
T ss_pred             cCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch--hhHhhcCccc---CCHHH-HHhhCCEEEECCCCChH--
Confidence            4688999999999999999999999999999999999876  3334444432   23333 24568999999987531  


Q ss_pred             CCCCCCCh---hcccCCcEEEEEecCCC
Q 012866          379 TDRVPVSE---ETLRDYQLVFDAVYTPR  403 (454)
Q Consensus       379 ~~~~~i~~---~~l~~~~~v~D~~y~P~  403 (454)
                      +. ..+..   ..++++.+++|+.-.+.
T Consensus       218 t~-~~i~~~~~~~mk~~ailIn~srg~~  244 (334)
T 2dbq_A          218 TY-HLINEERLKLMKKTAILINIARGKV  244 (334)
T ss_dssp             TT-TCBCHHHHHHSCTTCEEEECSCGGG
T ss_pred             HH-HhhCHHHHhcCCCCcEEEECCCCcc
Confidence            11 12432   24567788888776544

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=97.71  E-value=5e-05  Score=72.41  Aligned_cols=75  Identities=27%  Similarity=0.289  Sum_probs=57.1

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---c-------cccC
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---I-------LNFQ  360 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l-------~~~~  360 (454)
                      .+++||.++|.|++ |+|++++..|++.|++|.+.+|+.+++++.++++..   +.    .++.+   +       .+ .
T Consensus         5 f~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-~   83 (255)
T 4g81_D            5 FDLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDA-E   83 (255)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHH-T
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHH-H
Confidence            46899999999974 999999999999999999999999999888877632   21    12211   1       11 2


Q ss_pred             CCCccEEEECCCCC
Q 012866          361 PEKGAILANATPLG  374 (454)
Q Consensus       361 ~~~~divInat~~g  374 (454)
                      ..+.|++||.....
T Consensus        84 ~G~iDiLVNNAG~~   97 (255)
T 4g81_D           84 GIHVDILINNAGIQ   97 (255)
T ss_dssp             TCCCCEEEECCCCC
T ss_pred             CCCCcEEEECCCCC
Confidence            35689999987543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.71  E-value=2.1e-05  Score=78.27  Aligned_cols=117  Identities=17%  Similarity=0.181  Sum_probs=79.1

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|+++.|||.|.+|++++..|+..|++|..++|+....+...   +....  +++++ .++++|+|+.++|..  |
T Consensus       168 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~---g~~~~--~~l~e-ll~~sDvV~l~~Plt--~  239 (345)
T 4g2n_A          168 GMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE---GAIYH--DTLDS-LLGASDIFLIAAPGR--P  239 (345)
T ss_dssp             BCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT---TCEEC--SSHHH-HHHTCSEEEECSCCC--G
T ss_pred             ccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc---CCeEe--CCHHH-HHhhCCEEEEecCCC--H
Confidence            3568899999999999999999999999999999999864433211   32222  23333 345789999999974  2


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHH
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~  423 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|...--|++
T Consensus       240 ~T~-~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LD  288 (345)
T 4g2n_A          240 ELK-GFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLD  288 (345)
T ss_dssp             GGT-TCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEES
T ss_pred             HHH-HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEec
Confidence            211 235544   3577888888886644 56666666666554333444

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.70  E-value=2e-05  Score=78.04  Aligned_cols=122  Identities=16%  Similarity=0.124  Sum_probs=84.1

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|+++.|||.|.+|++++..|...|++|+.++|+..+.+ .+..++....++++    .+.++|+|+.++|..  +
T Consensus       140 ~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~l~e----ll~~aDvV~l~~P~t--~  212 (330)
T 4e5n_A          140 GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQ-TEQRLGLRQVACSE----LFASSDFILLALPLN--A  212 (330)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHH-HHHHHTEEECCHHH----HHHHCSEEEECCCCS--T
T ss_pred             CCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHh-HHHhcCceeCCHHH----HHhhCCEEEEcCCCC--H
Confidence            3568899999999999999999999999999999999874332 23344443333333    235689999999974  2


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHHHH
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMFLR  427 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~mlv~  427 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|...--|++.+-.
T Consensus       213 ~t~-~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~  265 (330)
T 4e5n_A          213 DTL-HLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEM  265 (330)
T ss_dssp             TTT-TCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGG
T ss_pred             HHH-HHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEeccccc
Confidence            222 235544   3578899999987644 666666666666544455555433

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.66  E-value=2.1e-05  Score=78.19  Aligned_cols=105  Identities=19%  Similarity=0.168  Sum_probs=57.6

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|.+++|+.++..      +  .....++.+ .+.++|+|+.++|..  +.
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~------~--~~~~~sl~e-ll~~aDvVil~vP~t--~~  235 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSGV------D--WIAHQSPVD-LARDSDVLAVCVAAS--AA  235 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTTS------C--CEECSSHHH-HHHTCSEEEECC-------
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccccc------C--ceecCCHHH-HHhcCCEEEEeCCCC--HH
Confidence            468899999999999999999999999999999999876511      1  111223333 245678888888753  11


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       236 t~-~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g  275 (340)
T 4dgs_A          236 TQ-NIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSG  275 (340)
T ss_dssp             ------CHHHHHHTTTTCEEEECSCC--------------C
T ss_pred             HH-HHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence            11 123332   2456666666654433 333344444444

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.66  E-value=3.8e-05  Score=70.48  Aligned_cols=91  Identities=19%  Similarity=0.201  Sum_probs=62.3

Q ss_pred             eEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-----CCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          305 MFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-----GAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       305 ~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-----~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      +++|+| +|.+|++++..|.+.|.+|++++|+.++++++.+.++     ... ...++.+ .+.++|+||.|+|......
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~D~Vi~~~~~~~~~~   79 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASI-TGMKNED-AAEACDIAVLTIPWEHAID   79 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCE-EEEEHHH-HHHHCSEEEECSCHHHHHH
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCC-ChhhHHH-HHhcCCEEEEeCChhhHHH
Confidence            589999 9999999999999999999999999999988877654     111 1223322 2356899999998543211


Q ss_pred             CCCCCCChhcccCCcEEEEEec
Q 012866          379 TDRVPVSEETLRDYQLVFDAVY  400 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y  400 (454)
                      .- ..+ ...+ ++.+++|+.-
T Consensus        80 ~~-~~l-~~~~-~~~~vi~~~~   98 (212)
T 1jay_A           80 TA-RDL-KNIL-REKIVVSPLV   98 (212)
T ss_dssp             HH-HHT-HHHH-TTSEEEECCC
T ss_pred             HH-HHH-HHHc-CCCEEEEcCC
Confidence            00 001 1123 4678888874

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.66  E-value=0.00021  Score=72.86  Aligned_cols=92  Identities=20%  Similarity=0.190  Sum_probs=64.8

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.||+++|+|.|.+|++++..|..+|++|++++|++.++.+. ...+....++++    .+..+|+||.+++.   +
T Consensus       242 g~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A-~~~G~~vv~LeE----lL~~ADIVv~atgt---~  313 (464)
T 3n58_A          242 DVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQA-AMDGFEVVTLDD----AASTADIVVTTTGN---K  313 (464)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH-HHTTCEECCHHH----HGGGCSEEEECCSS---S
T ss_pred             CCcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHH-HhcCceeccHHH----HHhhCCEEEECCCC---c
Confidence            357899999999999999999999999999999999998876543 233443444443    24568999987631   1


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecC
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYT  401 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~  401 (454)
                          ..+..+.   ++++.+++++...
T Consensus       314 ----~lI~~e~l~~MK~GAILINvGRg  336 (464)
T 3n58_A          314 ----DVITIDHMRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             ----SSBCHHHHHHSCTTEEEEECSSS
T ss_pred             ----cccCHHHHhcCCCCeEEEEcCCC
Confidence                1244433   3566666666544

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.65  E-value=0.0001  Score=63.03  Aligned_cols=112  Identities=17%  Similarity=0.149  Sum_probs=69.9

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--c---cccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--P---FEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~---~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      .++++|+|+|..|++++..|.+.|.+|++++|++++++.+.+. +...+  +   .+.+.+....++|+||.+++..   
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~-~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~---   81 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDE-GFDAVIADPTDESFYRSLDLEGVSAVLITGSDD---   81 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHT-TCEEEECCTTCHHHHHHSCCTTCSEEEECCSCH---
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHC-CCcEEECCCCCHHHHHhCCcccCCEEEEecCCH---
Confidence            5689999999999999999999999999999999998887653 32211  1   1122222356799999988721   


Q ss_pred             CCCCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHHHCCCc-eeccHH
Q 012866          378 NTDRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-IVSGVE  423 (454)
Q Consensus       378 ~~~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~~~Gl~  423 (454)
                      . ....+..  ..+. ...++-.+..+...   +..++.|.. +++-..
T Consensus        82 ~-~n~~~~~~a~~~~-~~~iia~~~~~~~~---~~l~~~G~~~vi~p~~  125 (141)
T 3llv_A           82 E-FNLKILKALRSVS-DVYAIVRVSSPKKK---EEFEEAGANLVVLVAD  125 (141)
T ss_dssp             H-HHHHHHHHHHHHC-CCCEEEEESCGGGH---HHHHHTTCSEEEEHHH
T ss_pred             H-HHHHHHHHHHHhC-CceEEEEEcChhHH---HHHHHcCCCEEECHHH
Confidence            0 0000000  0122 33344556566544   445677886 444333

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=97.65  E-value=8.1e-05  Score=70.87  Aligned_cols=69  Identities=23%  Similarity=0.226  Sum_probs=53.0

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~-v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .+.++.|||+|.+|++++..|.+.|++ |.+++|+.++++++++.++...  ..++.+ .+.++|+||.|+|.
T Consensus         9 ~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~Dvvi~av~~   78 (266)
T 3d1l_A            9 EDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEY--TTDLAE-VNPYAKLYIVSLKD   78 (266)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEE--ESCGGG-SCSCCSEEEECCCH
T ss_pred             CCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCce--eCCHHH-HhcCCCEEEEecCH
Confidence            356899999999999999999999996 9999999999999988765432  122322 23456777777764

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.64  E-value=7.4e-05  Score=73.63  Aligned_cols=109  Identities=17%  Similarity=0.166  Sum_probs=75.4

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|++++| +.++.  .+..++....  +++.+ .+.++|+|+.++|..-  
T Consensus       142 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~--~~~~~g~~~~--~~l~e-ll~~aDvVil~~p~~~--  214 (320)
T 1gdh_A          142 EKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS--DEASYQATFH--DSLDS-LLSVSQFFSLNAPSTP--  214 (320)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH--HHHHHTCEEC--SSHHH-HHHHCSEEEECCCCCT--
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh--hhhhcCcEEc--CCHHH-HHhhCCEEEEeccCch--
Confidence            468899999999999999999999999999999999 77652  3444554332  12333 2356899999998742  


Q ss_pred             CCCCCCCCh---hcccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          378 NTDRVPVSE---ETLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       378 ~~~~~~i~~---~~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      .+. ..+..   +.++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       215 ~t~-~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g  255 (320)
T 1gdh_A          215 ETR-YFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG  255 (320)
T ss_dssp             TTT-TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             HHH-hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            211 23444   34678899999987643 444445554444

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.63  E-value=0.00011  Score=68.21  Aligned_cols=74  Identities=20%  Similarity=0.165  Sum_probs=54.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccc-ccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPF-EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~-~~l~~~~~~~~divInat~~  373 (454)
                      ..+++++++|+|+ |+.|++++..|.+.|++|+++.|+.++++++... +. ..  .++ +++.+ ...+.|+|||+...
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~-~~~~~~~~Dl~~~~~~-~~~~~D~vi~~ag~   94 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRER-GASDIVVANLEEDFSH-AFASIDAVVFAAGS   94 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHT-TCSEEEECCTTSCCGG-GGTTCSEEEECCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhC-CCceEEEcccHHHHHH-HHcCCCEEEECCCC
Confidence            4578999999997 8999999999999999999999999998877652 22 21  122 34444 45678999998865


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      .
T Consensus        95 ~   95 (236)
T 3e8x_A           95 G   95 (236)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.63  E-value=3.6e-05  Score=65.46  Aligned_cols=72  Identities=19%  Similarity=0.224  Sum_probs=51.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--c---cccccccCCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--P---FEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~---~~~l~~~~~~~~divInat~~  373 (454)
                      +++++++|+|+|++|+.++..|.+.|++|++++|+.++++.+.+. +....  +   .+.+.+....++|+||.+++.
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~-~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~   80 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASY-ATHAVIANATEENELLSLGIRNFEYVIVAIGA   80 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTT-CSEEEECCTTCHHHHHTTTGGGCSEEEECCCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh-CCEEEEeCCCCHHHHHhcCCCCCCEEEECCCC
Confidence            346789999999999999999999999999999998887765432 22111  1   122222124578999999874

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=97.62  E-value=2.1e-05  Score=76.05  Aligned_cols=111  Identities=12%  Similarity=0.046  Sum_probs=73.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      +++.|||+|.+|.+++..|.+.|.+|++++|++++++++.+. +...  ..++.+ ...++|+||.++|...  ......
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~~advvi~~v~~~~--~~~~v~   75 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVAL-GARQ--ASSPAE-VCAACDITIAMLADPA--AAREVC   75 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHH-TCEE--CSCHHH-HHHHCSEEEECCSSHH--HHHHHH
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHC-CCee--cCCHHH-HHHcCCEEEEEcCCHH--HHHHHH
Confidence            368999999999999999999999999999999999888764 3221  122222 2346899999998531  000000


Q ss_pred             C--C--hhcccCCcEEEEEecCCCC-C-HHHHHHHHCCCceec
Q 012866          384 V--S--EETLRDYQLVFDAVYTPRK-T-RLLKDAEAAGAIIVS  420 (454)
Q Consensus       384 i--~--~~~l~~~~~v~D~~y~P~~-T-~ll~~A~~~G~~~~~  420 (454)
                      +  .  ...+.++.+++|..-.+.. + .+.+..++.|..+++
T Consensus        76 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~  118 (287)
T 3pdu_A           76 FGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLE  118 (287)
T ss_dssp             HSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            0  0  1235678899999876443 2 233445567766543

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=97.62  E-value=4.8e-05  Score=76.47  Aligned_cols=68  Identities=24%  Similarity=0.312  Sum_probs=51.2

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      +..+.|+++.|||.|.+|++++..|...|++|..++|..+...     .+.   .+.++++ .+.++|+|+.++|..
T Consensus       114 g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-----~~~---~~~sl~e-ll~~aDiV~l~~Plt  181 (381)
T 3oet_A          114 GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARG-----DEG---DFRTLDE-LVQEADVLTFHTPLY  181 (381)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHTT-----CCS---CBCCHHH-HHHHCSEEEECCCCC
T ss_pred             CCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChHHhc-----cCc---ccCCHHH-HHhhCCEEEEcCcCC
Confidence            3568899999999999999999999999999999998644321     111   2233333 345689999999865

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.62  E-value=6.7e-05  Score=74.38  Aligned_cols=107  Identities=20%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.++++.|||.|.+|++++..|+..|++|++++|+.++  +.+.+++....   ++.+ .+.++|+|+.++|...  .
T Consensus       142 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~g~~~~---~l~e-~l~~aDiVil~vp~~~--~  213 (333)
T 2d0i_A          142 ESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV--NVEKELKARYM---DIDE-LLEKSDIVILALPLTR--D  213 (333)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH--HHHHHHTEEEC---CHHH-HHHHCSEEEECCCCCT--T
T ss_pred             CCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch--hhhhhcCceec---CHHH-HHhhCCEEEEcCCCCh--H
Confidence            4578999999999999999999999999999999999876  33344443322   2322 2356899999998752  1


Q ss_pred             CCCCCCCh---hcccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          379 TDRVPVSE---ETLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       379 ~~~~~i~~---~~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      +. ..+..   ..++++ +++|+.-.+. ++.-+.+|-+.|
T Consensus       214 t~-~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~  252 (333)
T 2d0i_A          214 TY-HIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQG  252 (333)
T ss_dssp             TT-TSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTT
T ss_pred             HH-HHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcC
Confidence            11 23443   245677 8888876543 443344444443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.62  E-value=3.5e-05  Score=76.92  Aligned_cols=111  Identities=14%  Similarity=0.193  Sum_probs=74.9

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHH-HCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~-~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..+.|+++.|||.|.+|++++..|+ ..|++|++++|+.++.+.. .+++....  .++.+ .+.++|+|+.++|.... 
T Consensus       159 ~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~-~~~g~~~~--~~l~e-ll~~aDvVil~vp~~~~-  233 (348)
T 2w2k_A          159 HNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETE-KALGAERV--DSLEE-LARRSDCVSVSVPYMKL-  233 (348)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHH-HHHTCEEC--SSHHH-HHHHCSEEEECCCCSGG-
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhH-hhcCcEEe--CCHHH-HhccCCEEEEeCCCChH-
Confidence            4688999999999999999999999 9999999999987654432 33443332  13333 23568999999987521 


Q ss_pred             CCCCCCCCh---hcccCCcEEEEEecCCC-CCHHHHHHHHCCC
Q 012866          378 NTDRVPVSE---ETLRDYQLVFDAVYTPR-KTRLLKDAEAAGA  416 (454)
Q Consensus       378 ~~~~~~i~~---~~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~  416 (454)
                       +. ..+..   ..++++.+++|+.-.+. .+.-+.+|-+.|.
T Consensus       234 -t~-~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~  274 (348)
T 2w2k_A          234 -TH-HLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGK  274 (348)
T ss_dssp             -GT-TCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTS
T ss_pred             -HH-HHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCC
Confidence             11 12433   24577888888876643 4444555555543

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=97.62  E-value=0.00024  Score=73.41  Aligned_cols=69  Identities=26%  Similarity=0.306  Sum_probs=52.3

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      ..+.||+|+|+|+|++|++++..|+..|++|++++|++.++++.+.. +....   ++.+ ....+|+++.++.
T Consensus       261 ~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~-g~dv~---~lee-~~~~aDvVi~atG  329 (488)
T 3ond_A          261 VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATME-GLQVL---TLED-VVSEADIFVTTTG  329 (488)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCEEC---CGGG-TTTTCSEEEECSS
T ss_pred             CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHh-CCccC---CHHH-HHHhcCEEEeCCC
Confidence            56889999999999999999999999999999999999887766543 22222   2222 3345677776653

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.61  E-value=2.2e-05  Score=76.23  Aligned_cols=105  Identities=19%  Similarity=0.161  Sum_probs=73.8

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+.++.+.        ....+++++ .+.++|+|+.++|..  +.
T Consensus       118 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~--------~~~~~~l~e-ll~~aDiV~l~~P~t--~~  186 (290)
T 3gvx_A          118 TLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQNV--------DVISESPAD-LFRQSDFVLIAIPLT--DK  186 (290)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTTC--------SEECSSHHH-HHHHCSEEEECCCCC--TT
T ss_pred             eeeecchheeeccCchhHHHHHHHHhhCcEEEEEecccccccc--------ccccCChHH-HhhccCeEEEEeecc--cc
Confidence            3578999999999999999999999999999999998755321        111223333 345689999999964  22


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCC-CCCHHHHHHHHCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTP-RKTRLLKDAEAAG  415 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P-~~T~ll~~A~~~G  415 (454)
                      +. ..+..+   .++++.+++|+.-.+ .++.-+.+|-+.|
T Consensus       187 t~-~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  226 (290)
T 3gvx_A          187 TR-GMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKER  226 (290)
T ss_dssp             TT-TCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred             ch-hhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhc
Confidence            22 234443   467889999998664 3555555555544

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=97.61  E-value=2.6e-05  Score=74.19  Aligned_cols=71  Identities=15%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeC----------CH---------HHHHHHHHHhcC--Ccccc-----
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDI----------DF---------ERAKSLASDVMG--AARPF-----  353 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nR----------t~---------~~a~~la~~~~~--~~~~~-----  353 (454)
                      +++++|+|+|+||+|..++.+|+..|+ +|+|+++          ..         .|++.+++.+..  ..+.+     
T Consensus        26 l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~~~  105 (251)
T 1zud_1           26 LLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQ  105 (251)
T ss_dssp             HHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEECS
T ss_pred             HhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEEec
Confidence            457899999999999999999999999 9999954          32         788888777642  01111     


Q ss_pred             ----ccccccCCCCccEEEECCC
Q 012866          354 ----EDILNFQPEKGAILANATP  372 (454)
Q Consensus       354 ----~~l~~~~~~~~divInat~  372 (454)
                          +++.+ .+.++|+||+||.
T Consensus       106 ~~~~~~~~~-~~~~~DvVi~~~d  127 (251)
T 1zud_1          106 RLTGEALKD-AVARADVVLDCTD  127 (251)
T ss_dssp             CCCHHHHHH-HHHHCSEEEECCS
T ss_pred             cCCHHHHHH-HHhcCCEEEECCC
Confidence                11222 2346899999985

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=97.60  E-value=5.2e-05  Score=70.23  Aligned_cols=90  Identities=16%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      ...++.|||+|.+|++++..|.+.|.+|++++|+.++++++.+. +...   .++.+ .+.++|+||.|+|......   
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~-g~~~---~~~~~-~~~~~DvVi~av~~~~~~~---   98 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPS-AAQV---TFQEE-AVSSPEVIFVAVFREHYSS---   98 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBT-TSEE---EEHHH-HTTSCSEEEECSCGGGSGG---
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCce---ecHHH-HHhCCCEEEECCChHHHHH---
Confidence            34689999999999999999999999999999999988776443 2221   13333 3467899999998643211   


Q ss_pred             CCCC-hhcccCCcEEEEEecC
Q 012866          382 VPVS-EETLRDYQLVFDAVYT  401 (454)
Q Consensus       382 ~~i~-~~~l~~~~~v~D~~y~  401 (454)
                       .+. ...+ ++.+++|+...
T Consensus        99 -v~~l~~~~-~~~~vv~~s~g  117 (215)
T 2vns_A           99 -LCSLSDQL-AGKILVDVSNP  117 (215)
T ss_dssp             -GGGGHHHH-TTCEEEECCCC
T ss_pred             -HHHHHHhc-CCCEEEEeCCC
Confidence             111 1123 67899999865

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.59  E-value=8.2e-05  Score=77.40  Aligned_cols=115  Identities=19%  Similarity=0.223  Sum_probs=75.6

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc-cccccccccCCCCccEEEECCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA-RPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~-~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      ...+++.|||+|.||.+++..|++.|++|+++||++++++++.+..+   ... .+.+++.. .++.+|+||-++|.+..
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~-~l~~aDvVil~Vp~~~~   91 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVE-SLETPRRILLMVKAGAG   91 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHH-TBCSSCEEEECSCSSSH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHh-CCCCCCEEEEECCCHHH
Confidence            34678999999999999999999999999999999999999987642   111 12222211 12348999999987421


Q ss_pred             CCCCCCCCC--hhcccCCcEEEEEecCCC-CCH-HHHHHHHCCCcee
Q 012866          377 PNTDRVPVS--EETLRDYQLVFDAVYTPR-KTR-LLKDAEAAGAIIV  419 (454)
Q Consensus       377 p~~~~~~i~--~~~l~~~~~v~D~~y~P~-~T~-ll~~A~~~G~~~~  419 (454)
                        .+. .+.  ...++++.+++|+.-... .|. +.+..++.|..++
T Consensus        92 --v~~-vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v  135 (480)
T 2zyd_A           92 --TDA-AIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFI  135 (480)
T ss_dssp             --HHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             --HHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCee
Confidence              011 111  123567889999876533 333 4444556676543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.59  E-value=2.5e-05  Score=76.53  Aligned_cols=111  Identities=13%  Similarity=0.094  Sum_probs=73.6

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      +..++.|||+|.+|++++..|.+.|++|+++||++++++++.+. +...  ..++.+ ...++|+||.|+|....  ...
T Consensus        20 ~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~~~~~-~~~~aDvvi~~vp~~~~--~~~   93 (310)
T 3doj_A           20 HMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEH-GASV--CESPAE-VIKKCKYTIAMLSDPCA--ALS   93 (310)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHT-TCEE--CSSHHH-HHHHCSEEEECCSSHHH--HHH
T ss_pred             cCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-CCeE--cCCHHH-HHHhCCEEEEEcCCHHH--HHH
Confidence            34689999999999999999999999999999999999888743 3321  122222 23468999999875310  000


Q ss_pred             CCC--C--hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCce
Q 012866          382 VPV--S--EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAII  418 (454)
Q Consensus       382 ~~i--~--~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~  418 (454)
                      ..+  .  ...+.++.+++|+.-.+..+  .+.+..++.|..+
T Consensus        94 v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~  136 (310)
T 3doj_A           94 VVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRF  136 (310)
T ss_dssp             HHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             HHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEE
Confidence            000  0  12456788999998754432  2334455667644

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.58  E-value=0.00038  Score=70.87  Aligned_cols=93  Identities=22%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|++++|+|.|.+|++++..|..+|++|+++++++.++.... ..+....++   .+ .+.++|+||.++..  . 
T Consensus       206 g~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~-~~G~~~~sL---~e-al~~ADVVilt~gt--~-  277 (436)
T 3h9u_A          206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAA-MEGYQVLLV---ED-VVEEAHIFVTTTGN--D-  277 (436)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTCEECCH---HH-HTTTCSEEEECSSC--S-
T ss_pred             CCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHH-HhCCeecCH---HH-HHhhCCEEEECCCC--c-
Confidence            3568899999999999999999999999999999999987765433 334333333   33 35679999976532  1 


Q ss_pred             CCCCCCCCh---hcccCCcEEEEEecCC
Q 012866          378 NTDRVPVSE---ETLRDYQLVFDAVYTP  402 (454)
Q Consensus       378 ~~~~~~i~~---~~l~~~~~v~D~~y~P  402 (454)
                          ..+..   +.++++.+++++.-.+
T Consensus       278 ----~iI~~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          278 ----DIITSEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             ----CSBCTTTGGGCCTTEEEEECSSSG
T ss_pred             ----CccCHHHHhhcCCCcEEEEeCCCC
Confidence                12333   3457888888887544

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.58  E-value=0.00012  Score=73.01  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=74.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  .+..++....  .++.+ .+.++|+|+.++|..  +.
T Consensus       164 ~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~g~~~~--~~l~e-ll~~aDvV~l~~P~t--~~  236 (347)
T 1mx3_A          164 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDG--VERALGLQRV--STLQD-LLFHSDCVTLHCGLN--EH  236 (347)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTT--HHHHHTCEEC--SSHHH-HHHHCSEEEECCCCC--TT
T ss_pred             cCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh--hHhhcCCeec--CCHHH-HHhcCCEEEEcCCCC--HH
Confidence            36889999999999999999999999999999999986642  2344454321  12222 234689999999864  22


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       237 t~-~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g  276 (347)
T 1mx3_A          237 NH-HLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG  276 (347)
T ss_dssp             CT-TSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             HH-HHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhC
Confidence            11 234443   3567889999987754 455444444443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.57  E-value=5.2e-05  Score=76.10  Aligned_cols=96  Identities=15%  Similarity=0.194  Sum_probs=63.6

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~-v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..+.|+++.|||.|.+|++++..|...|++ |++++|+..+.+. +..++....  +++.+ .+.++|+|+.++|..  +
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~-~~~~g~~~~--~~l~e-ll~~aDvV~l~~P~t--~  233 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDA-EEKVGARRV--ENIEE-LVAQADIVTVNAPLH--A  233 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHH-HHHTTEEEC--SSHHH-HHHTCSEEEECCCCS--T
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhH-HHhcCcEec--CCHHH-HHhcCCEEEECCCCC--h
Confidence            468899999999999999999999999996 9999998755432 344443321  23333 245689999999874  1


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecC
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYT  401 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~  401 (454)
                      .+. ..+..+   .++++.+++|+.-.
T Consensus       234 ~t~-~li~~~~l~~mk~ga~lIn~arG  259 (364)
T 2j6i_A          234 GTK-GLINKELLSKFKKGAWLVNTARG  259 (364)
T ss_dssp             TTT-TCBCHHHHTTSCTTEEEEECSCG
T ss_pred             HHH-HHhCHHHHhhCCCCCEEEECCCC
Confidence            111 123332   24455555555544

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.57  E-value=4.9e-05  Score=74.14  Aligned_cols=122  Identities=13%  Similarity=0.084  Sum_probs=80.0

Q ss_pred             CceEEEEccchhHHH-HHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRA-LAFGAKSR-GARVV-IFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       303 ~k~vlViGaGG~ara-i~~~L~~~-G~~v~-i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      ..++.|||+|.+|+. .+..|.+. +++++ |++|+.+++++++++++...  +.++++ .+.+.|+|+.|||.....  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~--~~~~~~-ll~~~D~V~i~tp~~~h~--   80 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMP--FDSIES-LAKKCDCIFLHSSTETHY--   80 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCB--CSCHHH-HHTTCSEEEECCCGGGHH--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCC--cCCHHH-HHhcCCEEEEeCCcHhHH--
Confidence            358999999999996 78888774 56655 99999999999999997653  444444 233789999999965432  


Q ss_pred             CCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHHHHHHHHHHHH
Q 012866          380 DRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMFLRQAIGQFN  434 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~  434 (454)
                         .+-...+..+.-|+  +-+|.-      -.+.+.|+++|..+.-|....-..+....+
T Consensus        81 ---~~~~~al~~gk~vl--~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~  136 (308)
T 3uuw_A           81 ---EIIKILLNLGVHVY--VDKPLASTVSQGEELIELSTKKNLNLMVGFNRRFCPMYKEIK  136 (308)
T ss_dssp             ---HHHHHHHHTTCEEE--ECSSSSSSHHHHHHHHHHHHHHTCCEEECCGGGGCHHHHHHH
T ss_pred             ---HHHHHHHHCCCcEE--EcCCCCCCHHHHHHHHHHHHHcCCEEEEeeccccCHHHHHHH
Confidence               12223455444333  334542      236667777787776666555444443333

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.57  E-value=0.00014  Score=68.94  Aligned_cols=64  Identities=19%  Similarity=0.200  Sum_probs=52.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G-~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      ++.|||+|.+|++++..|.+.| .+|++++|++++++++.+.++...  ..+..+ .. ++|+||-|+|
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~--~~~~~~-~~-~~D~vi~~v~   66 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVET--SATLPE-LH-SDDVLILAVK   66 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEE--ESSCCC-CC-TTSEEEECSC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEE--eCCHHH-Hh-cCCEEEEEeC
Confidence            5899999999999999999999 799999999999999988766432  123333 34 7899999887

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=97.56  E-value=3.9e-05  Score=76.32  Aligned_cols=117  Identities=21%  Similarity=0.279  Sum_probs=81.8

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|+++.|||.|.+|++++..|+..|++|+.++|+.+...      .. ...+.++++ .+.++|+|+.++|..  +
T Consensus       143 ~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~------~~-~~~~~~l~e-ll~~aDvV~l~~Plt--~  212 (343)
T 2yq5_A          143 SNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPEF------EP-FLTYTDFDT-VLKEADIVSLHTPLF--P  212 (343)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGGG------TT-TCEECCHHH-HHHHCSEEEECCCCC--T
T ss_pred             ccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhhh------hc-cccccCHHH-HHhcCCEEEEcCCCC--H
Confidence            3567899999999999999999999999999999999875411      11 111223333 345789999999974  2


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-|.+|-+.|...--|++.+
T Consensus       213 ~t~-~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~  263 (343)
T 2yq5_A          213 STE-NMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTL  263 (343)
T ss_dssp             TTT-TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCC
T ss_pred             HHH-HHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEeccc
Confidence            222 235544   3678999999987754 6666777777665444455544

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=97.56  E-value=3.5e-05  Score=76.43  Aligned_cols=117  Identities=14%  Similarity=0.217  Sum_probs=82.3

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.++++.|||.|.+|++++..|...|++|++++|+.++.  + +.+ ....  +++.+ .+.++|+|+.++|..-  .
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~-~~~~--~~l~e-ll~~aDvV~l~~p~~~--~  212 (333)
T 1j4a_A          142 REVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE--L-EKK-GYYV--DSLDD-LYKQADVISLHVPDVP--A  212 (333)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--H-HHT-TCBC--SCHHH-HHHHCSEEEECSCCCG--G
T ss_pred             ccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh--H-Hhh-Ceec--CCHHH-HHhhCCEEEEcCCCcH--H
Confidence            46789999999999999999999999999999999987664  2 232 2222  13333 2456899999998642  1


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|...--|++.+
T Consensus       213 t~-~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~  262 (333)
T 1j4a_A          213 NV-HMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  262 (333)
T ss_dssp             GT-TCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             HH-HHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecC
Confidence            11 234433   4678899999987643 6667777777766555556544

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.56  E-value=6.1e-05  Score=73.85  Aligned_cols=124  Identities=12%  Similarity=0.057  Sum_probs=84.2

Q ss_pred             ceEEEEccchhHHH-HHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRA-LAFGAKSR-GARVV-IFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaGG~ara-i~~~L~~~-G~~v~-i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .++.|||+|.+|+. .+..|.+. +++++ +++|+.++++++++.++... .+++++    ..+.|+|+.|||.....  
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l----~~~~D~V~i~tp~~~h~--   79 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSL----AASCDAVFVHSSTASHF--   79 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHH----HTTCSEEEECSCTTHHH--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHh----hcCCCEEEEeCCchhHH--
Confidence            47999999999996 88888765 56655 99999999999999987642 123333    24689999999864321  


Q ss_pred             CCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHHHHHHHHHHHHHhcC
Q 012866          380 DRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTG  438 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~f~lw~g  438 (454)
                         ++....++.+.-|+  +-+|.-      ..+.+.|++.|..+..|..+.-..+....+-+.|
T Consensus        80 ---~~~~~al~~G~~v~--~eKP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~k~~i~  139 (319)
T 1tlt_A           80 ---DVVSTLLNAGVHVC--VDKPLAENLRDAERLVELAARKKLTLMVGFNRRFAPLYGELKTQLA  139 (319)
T ss_dssp             ---HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCHHHHHHTTTGG
T ss_pred             ---HHHHHHHHcCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCeEEEeeecccCHHHHHHHHHhC
Confidence               12234455555333  234542      2477788889998888877766666555554443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.55  E-value=5.6e-05  Score=70.21  Aligned_cols=90  Identities=20%  Similarity=0.193  Sum_probs=63.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVI-FDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i-~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      -.++.|||+|.+|.+++..|.+.|.+|++ ++|+.+++++++++++.....  +..+ ...++|+||.|+|.......-.
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~--~~~~-~~~~aDvVilavp~~~~~~v~~   99 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKA--VELK-DALQADVVILAVPYDSIADIVT   99 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEE--CCHH-HHTTSSEEEEESCGGGHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCccc--ChHH-HHhcCCEEEEeCChHHHHHHHH
Confidence            35899999999999999999999998888 999999999999888754311  1111 2356899999998533211000


Q ss_pred             CCCChhcccCCcEEEEEe
Q 012866          382 VPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~  399 (454)
                       .+..  + ++.+++|+.
T Consensus       100 -~l~~--~-~~~ivi~~~  113 (220)
T 4huj_A          100 -QVSD--W-GGQIVVDAS  113 (220)
T ss_dssp             -TCSC--C-TTCEEEECC
T ss_pred             -Hhhc--c-CCCEEEEcC
Confidence             1111  3 356888887

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.54  E-value=5.3e-05  Score=66.15  Aligned_cols=116  Identities=24%  Similarity=0.234  Sum_probs=71.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--c---cccccccCCCCccEEEECCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--P---FEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~---~~~l~~~~~~~~divInat~~g~  375 (454)
                      ..+++++|+|+|.+|+.++..|.+.|++|++++|++++++.+....+...+  +   .+.+......++|+||.|++...
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~   96 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS   96 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHH
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcH
Confidence            457899999999999999999999999999999999987765423332211  1   11222212457899999997421


Q ss_pred             CCCCCCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHH
Q 012866          376 HPNTDRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       376 ~p~~~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~  423 (454)
                      .   .. .+..  ..+.+...++-.+.+|...   +..++.|+.++.-..
T Consensus        97 ~---~~-~~~~~~~~~~~~~~iv~~~~~~~~~---~~l~~~G~~vi~p~~  139 (155)
T 2g1u_A           97 T---NF-FISMNARYMFNVENVIARVYDPEKI---KIFEENGIKTICPAV  139 (155)
T ss_dssp             H---HH-HHHHHHHHTSCCSEEEEECSSGGGH---HHHHTTTCEEECHHH
T ss_pred             H---HH-HHHHHHHHHCCCCeEEEEECCHHHH---HHHHHCCCcEEcHHH
Confidence            0   00 0000  1123344555556566543   445567877444333

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.54  E-value=8.9e-05  Score=72.92  Aligned_cols=113  Identities=16%  Similarity=0.192  Sum_probs=76.8

Q ss_pred             eEEEEccchhHHHH-HHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCC-c-cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRAL-AFGAKSRGAR-VVIFDIDFERAKSLASDVMGA-A-RPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       305 ~vlViGaGG~arai-~~~L~~~G~~-v~i~nRt~~~a~~la~~~~~~-~-~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ++.|||+|++|+.. +.+|.+.|++ +.|++|+.+++++++++++.. . .+++++-+  -.+.|+|+.|||.....   
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~--~~~~D~V~i~tp~~~h~---   76 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVG--DPDVDAVYVSTTNELHR---   76 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHT--CTTCCEEEECSCGGGHH---
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEeCChhHhH---
Confidence            58999999999998 7788776776 569999999999999998753 2 23333321  13689999999864321   


Q ss_pred             CCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                        ++....++.+.-|+  +-+|..      ..+.+.|++.|+.+..|..+..
T Consensus        77 --~~~~~al~~Gk~v~--~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~  124 (332)
T 2glx_A           77 --EQTLAAIRAGKHVL--CEKPLAMTLEDAREMVVAAREAGVVLGTNHHLRN  124 (332)
T ss_dssp             --HHHHHHHHTTCEEE--ECSSSCSSHHHHHHHHHHHHHHTCCEEECCCGGG
T ss_pred             --HHHHHHHHCCCeEE--EeCCCcCCHHHHHHHHHHHHHcCCEEEEeehhhc
Confidence              12234566665443  345542      3577788888988776654443

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=97.54  E-value=8.4e-06  Score=80.24  Aligned_cols=109  Identities=17%  Similarity=0.078  Sum_probs=69.4

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|+..|++|+.++|+.+..+.+.     ......++++ .+.++|+|+.++|..-  .
T Consensus       135 ~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-----~~~~~~~l~e-ll~~aDiV~l~~Plt~--~  206 (315)
T 3pp8_A          135 YTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE-----SYVGREELRA-FLNQTRVLINLLPNTA--Q  206 (315)
T ss_dssp             CCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCCTTCE-----EEESHHHHHH-HHHTCSEEEECCCCCG--G
T ss_pred             CCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhhhhhh-----hhcccCCHHH-HHhhCCEEEEecCCch--h
Confidence            457899999999999999999999999999999999875432110     0001123333 3456899999888642  1


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGA  416 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~  416 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|.
T Consensus       207 t~-~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  247 (315)
T 3pp8_A          207 TV-GIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGK  247 (315)
T ss_dssp             GT-TCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTS
T ss_pred             hh-hhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCC
Confidence            11 134433   2456677777765533 4554555555443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=97.53  E-value=3.5e-05  Score=75.86  Aligned_cols=110  Identities=15%  Similarity=0.139  Sum_probs=69.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC-CeEEEEeCCH---HHHHHHHHHhcCCccccc-cccccCCCCccEEEECCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDF---ERAKSLASDVMGAARPFE-DILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G-~~v~i~nRt~---~~a~~la~~~~~~~~~~~-~l~~~~~~~~divInat~~g~~p~  378 (454)
                      .++.|||+|.+|.+++..|.+.| .+|+++||++   +++++..+.+...-. .. ++.+ ...++|+||.|+|......
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~~e-~~~~aDvVi~avp~~~~~~  102 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDDVA-GIACADVVLSLVVGAATKA  102 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESSGG-GGGGCSEEEECCCGGGHHH
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCHHH-HHhcCCEEEEecCCHHHHH
Confidence            57999999999999999999999 8999999997   333333333211111 23 3333 3457899999998642211


Q ss_pred             CCCCCCC--hhcccCCcEEEEEecCCCC-CH-HHHHHHHCCCcee
Q 012866          379 TDRVPVS--EETLRDYQLVFDAVYTPRK-TR-LLKDAEAAGAIIV  419 (454)
Q Consensus       379 ~~~~~i~--~~~l~~~~~v~D~~y~P~~-T~-ll~~A~~~G~~~~  419 (454)
                          .+.  ...++++.+++|..-.+.. +. +.+..+++|..++
T Consensus       103 ----~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~  143 (317)
T 4ezb_A          103 ----VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFV  143 (317)
T ss_dssp             ----HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEE
T ss_pred             ----HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence                011  1235678899999865443 32 2234455676543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=97.53  E-value=9.8e-05  Score=72.20  Aligned_cols=103  Identities=14%  Similarity=0.045  Sum_probs=70.9

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .+.++++.|||.|.+|++++..|...|++|++++|+.+ ..      +.  ....++.+ .+.++|+|+.++|..-  .+
T Consensus       121 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~------~~--~~~~~l~e-ll~~aDvV~l~~P~~~--~t  188 (303)
T 1qp8_A          121 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG------PW--RFTNSLEE-ALREARAAVCALPLNK--HT  188 (303)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS------SS--CCBSCSHH-HHTTCSEEEECCCCST--TT
T ss_pred             CCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc------Cc--ccCCCHHH-HHhhCCEEEEeCcCch--HH
Confidence            57899999999999999999999999999999999875 11      11  12233433 3467899999998752  21


Q ss_pred             CCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          380 DRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       380 ~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      . ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       189 ~-~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g  227 (303)
T 1qp8_A          189 R-GLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER  227 (303)
T ss_dssp             T-TCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred             H-HHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhC
Confidence            1 234433   3577889999877644 343344444433

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.53  E-value=0.00072  Score=67.83  Aligned_cols=190  Identities=18%  Similarity=0.236  Sum_probs=111.6

Q ss_pred             HHHh-cCCCceEEecccCCHHHHHHhcC--CCCCCEEEeccCchHHHHhhhhhcCHhHhHccceeEEEEeCCCCeEEEee
Q 012866          195 TFRH-VNYNGIYVPMFVDDLKKFFSTYS--SPDFAGFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYN  271 (454)
Q Consensus       195 ~f~~-~gl~~~y~~~~~~~~~~~~~~l~--~~~~~G~~VT~P~K~~v~~~~d~~~~~A~~igavNTi~~~~~~g~l~G~N  271 (454)
                      +|+. -|+|..=+.+++.+.++|++.++  .+.|.|++.--==..+.++.++++-+.      .|          +-=+|
T Consensus        98 Lf~~~agid~~pi~Ldv~~~dEfv~~v~~~~p~F~~I~lED~~~p~~f~il~~~r~~------~~----------ipvf~  161 (398)
T 2a9f_A           98 LFKAFAGVDAIPIVLDTKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKE------CH----------IPVFH  161 (398)
T ss_dssp             HHHHHSSCEEEEEECCCCCHHHHHHHHHHHGGGCSEEEECSCCTTHHHHHHHHHHHH------CS----------SCEEE
T ss_pred             HHHhccCCceeeeEeCCCCHHHHHHHHHHcCCceeEeccccCCChHHHHHHHHhhhc------CC----------cceec
Confidence            3443 46885444556668888877663  478999887531123344444433222      11          22244


Q ss_pred             ccHHH--H--HHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH----HH---H
Q 012866          272 TDCEA--S--ITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF----ER---A  339 (454)
Q Consensus       272 TD~~G--~--~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~----~~---a  339 (454)
                      -|-.|  +  +.++-..++         -.+..+++.+++|+|+|-+|.+++..|..+|+ +|++++|+-    +|   .
T Consensus       162 DDiqGTa~V~lAall~al~---------l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L  232 (398)
T 2a9f_A          162 DDQHGTAIVVLAAIFNSLK---------LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQL  232 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---------TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSC
T ss_pred             chhhhHHHHHHHHHHHHHH---------HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccc
Confidence            45443  2  223322232         12356888999999999999999999999999 999999972    11   1


Q ss_pred             H----HHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcc---cCCcEEEEEecC-CCCCHHHHHH
Q 012866          340 K----SLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL---RDYQLVFDAVYT-PRKTRLLKDA  411 (454)
Q Consensus       340 ~----~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l---~~~~~v~D~~y~-P~~T~ll~~A  411 (454)
                      .    .++..... ......|.+ .+.++|++|-++..|        .+.++++   .++.++|++.-- |+-||  ++|
T Consensus       233 ~~~k~~fa~~~~~-~~~~~~L~e-av~~ADV~IG~Sapg--------l~T~EmVk~Ma~~pIIfalsNPt~E~~p--e~a  300 (398)
T 2a9f_A          233 APHHLDIAKVTNR-EFKSGTLED-ALEGADIFIGVSAPG--------VLKAEWISKMAARPVIFAMANPIPEIYP--DEA  300 (398)
T ss_dssp             CC---CHHHHHSC-TTCCCSCSH-HHHTTCSEEECCSTT--------CCCHHHHHTSCSSCEEEECCSSSCSSCH--HHH
T ss_pred             hHHHHHHhhccCc-ccchhhHHH-HhccCCEEEecCCCC--------CCCHHHHHhhCCCCEEEECCCCCccCCH--HHH
Confidence            1    22332111 111223444 456689999875422        3666654   578999999842 34466  666


Q ss_pred             HHCCC-ceecc
Q 012866          412 EAAGA-IIVSG  421 (454)
Q Consensus       412 ~~~G~-~~~~G  421 (454)
                      .+.|. .+..|
T Consensus       301 ~~~g~~i~atG  311 (398)
T 2a9f_A          301 LEAGAYIVGTG  311 (398)
T ss_dssp             HTTTCSEEEES
T ss_pred             HHhCCeEEEeC
Confidence            66654 33444

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.53  E-value=8.1e-05  Score=75.28  Aligned_cols=110  Identities=12%  Similarity=0.051  Sum_probs=74.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|+.++|+..+.+ .+..++....  .++++ .+.++|+|+.++|..  |.
T Consensus       187 ~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~-~~~~~G~~~~--~~l~e-ll~~aDvV~l~~Plt--~~  260 (393)
T 2nac_A          187 YDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES-VEKELNLTWH--ATRED-MYPVCDVVTLNCPLH--PE  260 (393)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH-HHHHHTCEEC--SSHHH-HGGGCSEEEECSCCC--TT
T ss_pred             ccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchh-hHhhcCceec--CCHHH-HHhcCCEEEEecCCc--hH
Confidence            468899999999999999999999999999999999865433 3444454321  22333 345789999999864  22


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      + ...+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       261 t-~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  300 (393)
T 2nac_A          261 T-EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESG  300 (393)
T ss_dssp             T-TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             H-HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence            2 1234433   3567778888876543 444445555544

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.52  E-value=0.00037  Score=71.85  Aligned_cols=97  Identities=16%  Similarity=0.058  Sum_probs=62.2

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHHhcCCccccccccccCCCC-ccEEEECCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE----RAKSLASDVMGAARPFEDILNFQPEK-GAILANATPLG  374 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~----~a~~la~~~~~~~~~~~~l~~~~~~~-~divInat~~g  374 (454)
                      .+++|+++|+|.|++|+++|..|.++|++|+++++...    ..+.|.+ .|.... ...-.+....+ +|+||-++.  
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~-~gi~~~-~g~~~~~~~~~~~d~vv~spg--   81 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLE-EGIKVV-CGSHPLELLDEDFCYMIKNPG--   81 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHH-TTCEEE-ESCCCGGGGGSCEEEEEECTT--
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHh-CCCEEE-ECCChHHhhcCCCCEEEECCc--
Confidence            46789999999999999999999999999999998642    2222221 121110 00000000111 344332111  


Q ss_pred             CCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866          375 MHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       375 ~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                                                -|...|.+++|+++|++++.-.+++-
T Consensus        82 --------------------------i~~~~p~~~~a~~~gi~v~~~~e~~~  107 (451)
T 3lk7_A           82 --------------------------IPYNNPMVKKALEKQIPVLTEVELAY  107 (451)
T ss_dssp             --------------------------SCTTSHHHHHHHHTTCCEECHHHHHH
T ss_pred             --------------------------CCCCChhHHHHHHCCCcEEeHHHHHH
Confidence                                      14567889999999999999999764

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=97.52  E-value=5.4e-05  Score=74.31  Aligned_cols=101  Identities=23%  Similarity=0.247  Sum_probs=70.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.+       .   ...++.+ .+.++|+|+.++|..-.  
T Consensus       140 ~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-------~---~~~~l~e-ll~~aDvV~l~~p~~~~--  206 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-------Y---PFLSLEE-LLKEADVVSLHTPLTPE--  206 (311)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-------S---CBCCHHH-HHHHCSEEEECCCCCTT--
T ss_pred             cCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-------c---ccCCHHH-HHhhCCEEEEeCCCChH--
Confidence            467899999999999999999999999999999999876543       1   2223333 34568999999887421  


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHH
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEA  413 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~  413 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+
T Consensus       207 t~-~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  244 (311)
T 2cuk_A          207 TH-RLLNRERLFAMKRGAILLNTARGALVDTEALVEALR  244 (311)
T ss_dssp             TT-TCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred             HH-hhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence            11 234432   3567888888877643 3434444444

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=97.52  E-value=2.4e-05  Score=77.48  Aligned_cols=116  Identities=17%  Similarity=0.176  Sum_probs=81.5

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  + +..    ..+.++.+ .+.++|+|+.++|...  .
T Consensus       142 ~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~----~~~~~l~e-ll~~aDvV~~~~p~t~--~  211 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG--I-EDY----CTQVSLDE-VLEKSDIITIHAPYIK--E  211 (331)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS--C-TTT----CEECCHHH-HHHHCSEEEECCCCCT--T
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH--H-Hhc----cccCCHHH-HHhhCCEEEEecCCch--H
Confidence            46789999999999999999999999999999999987653  1 111    12223333 3456899999998742  2


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      +. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|...--|++.+
T Consensus       212 t~-~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~  261 (331)
T 1xdw_A          212 NG-AVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVL  261 (331)
T ss_dssp             TC-CSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             HH-HHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecC
Confidence            12 235443   4678899999987643 6666777777666555556654

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.51  E-value=0.00012  Score=72.54  Aligned_cols=107  Identities=14%  Similarity=0.130  Sum_probs=72.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.++++.|||.|.+|++++..|+..|++|++++|+.++.+.. ..++....   ++.+ .+.++|+||.++|...  .
T Consensus       151 ~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~-~~~g~~~~---~l~e-~l~~aDvVi~~vp~~~--~  223 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEA-AEFQAEFV---STPE-LAAQSDFIVVACSLTP--A  223 (330)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHH-HTTTCEEC---CHHH-HHHHCSEEEECCCCCT--T
T ss_pred             cCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHH-HhcCceeC---CHHH-HHhhCCEEEEeCCCCh--H
Confidence            46789999999999999999999999999999999987655543 33333222   3333 2356899999998642  1


Q ss_pred             CCCCCCCh---hcccCCcEEEEEecCCC-CCHHHHHHHH
Q 012866          379 TDRVPVSE---ETLRDYQLVFDAVYTPR-KTRLLKDAEA  413 (454)
Q Consensus       379 ~~~~~i~~---~~l~~~~~v~D~~y~P~-~T~ll~~A~~  413 (454)
                      +. ..+..   ..++++.+++|+.-.+. .+.-+.++-+
T Consensus       224 t~-~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~  261 (330)
T 2gcg_A          224 TE-GLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALA  261 (330)
T ss_dssp             TT-TCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHH
T ss_pred             HH-HhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHH
Confidence            11 22432   24677888888876543 4443444433

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.50  E-value=9.6e-05  Score=70.07  Aligned_cols=67  Identities=15%  Similarity=0.130  Sum_probs=53.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .++.|||+|.+|++++..|.+.|.+|.+++|+.++++++++.++...  ..++.+ .+.++|+||.|+|.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~--~~~~~~-~~~~~D~Vi~~v~~   70 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPY--AMSHQD-LIDQVDLVILGIKP   70 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCB--CSSHHH-HHHTCSEEEECSCG
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEe--eCCHHH-HHhcCCEEEEEeCc
Confidence            47999999999999999999999899999999999999988776542  122222 23468999999974

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.49  E-value=0.0002  Score=64.14  Aligned_cols=112  Identities=13%  Similarity=0.021  Sum_probs=70.7

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCCcc--cc---cccccc-CCCCccEEEECCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMGAAR--PF---EDILNF-QPEKGAILANATP  372 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~-G~~v~i~nRt~~~a~~la~~~~~~~~--~~---~~l~~~-~~~~~divInat~  372 (454)
                      +..+.+++|+|+|.+|+.++..|.+. |++|++++|++++++.+.+ .+...+  +.   +.+.+. ...++|+||.+++
T Consensus        36 ~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~-~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           36 NPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS-EGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             CCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH-TTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH-CCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            45577899999999999999999999 9999999999999887654 344322  11   123332 2567999999887


Q ss_pred             CCCCCCCCCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHHHCCCcee
Q 012866          373 LGMHPNTDRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV  419 (454)
Q Consensus       373 ~g~~p~~~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~  419 (454)
                      ....   . ..+-.  ..+.+...++.....|...   +..++.|...+
T Consensus       115 ~~~~---~-~~~~~~~~~~~~~~~ii~~~~~~~~~---~~l~~~G~~~v  156 (183)
T 3c85_A          115 HHQG---N-QTALEQLQRRNYKGQIAAIAEYPDQL---EGLLESGVDAA  156 (183)
T ss_dssp             SHHH---H-HHHHHHHHHTTCCSEEEEEESSHHHH---HHHHHHTCSEE
T ss_pred             ChHH---H-HHHHHHHHHHCCCCEEEEEECCHHHH---HHHHHcCCCEE
Confidence            3110   0 00000  1123334455555555433   45566788643

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.49  E-value=8.4e-05  Score=70.15  Aligned_cols=67  Identities=15%  Similarity=0.175  Sum_probs=52.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC----eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA----RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~----~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      +++.|||+|.+|++++..|.+.|.    +|++++|+++++++++++++....  .+..+ ...++|+||-|++.
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~--~~~~e-~~~~aDvVilav~~   73 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTT--TDNNE-VAKNADILILSIKP   73 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEEC--SCHHH-HHHHCSEEEECSCT
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEe--CChHH-HHHhCCEEEEEeCH
Confidence            479999999999999999999997    999999999999999887765421  12222 22457888888864

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=97.49  E-value=0.00012  Score=70.58  Aligned_cols=42  Identities=21%  Similarity=0.349  Sum_probs=38.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      ++|.|||+|.+|++++..|+..|++|++++|+.++++++.+.
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~   46 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKR   46 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHH
Confidence            689999999999999999999999999999999988877655

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.49  E-value=0.0001  Score=71.22  Aligned_cols=68  Identities=12%  Similarity=0.189  Sum_probs=53.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~---~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .+++.|||+|.+|.+++..|.+.|.   +|++++|+.+++++++++++....  .+..+ .+.++|+||-|++.
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~--~~~~~-~~~~aDvVilav~p   73 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTT--QDNRQ-GALNADVVVLAVKP   73 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEE--SCHHH-HHSSCSEEEECSCG
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEe--CChHH-HHhcCCeEEEEeCH
Confidence            3679999999999999999999997   899999999999999987765321  12222 23457888888764

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.48  E-value=0.00016  Score=75.09  Aligned_cols=113  Identities=16%  Similarity=0.226  Sum_probs=76.7

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh--cCCc---cccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV--MGAA---RPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~--~~~~---~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..++.|||.|.||.+++..|.+.|++|+++||++++++++.+.-  +...   .+.+++.+ .++++|+||.++|.+.. 
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~-~l~~aDvVil~Vp~~~~-   81 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVS-KLKKPRRIILLVKAGQA-   81 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH-TBCSSCEEEECSCSSHH-
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHh-hccCCCEEEEecCChHH-
Confidence            35799999999999999999999999999999999999987752  2111   12333322 23468999999987521 


Q ss_pred             CCCCCCCC--hhcccCCcEEEEEecCCC-CC-HHHHHHHHCCCcee
Q 012866          378 NTDRVPVS--EETLRDYQLVFDAVYTPR-KT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       378 ~~~~~~i~--~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~~~~  419 (454)
                       .+. .+.  ...++++.+++|..-.+. .| .+.++.+++|+.++
T Consensus        82 -v~~-vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fv  125 (484)
T 4gwg_A           82 -VDD-FIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFV  125 (484)
T ss_dssp             -HHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             -HHH-HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccc
Confidence             010 011  124678899999986643 33 33455567787643

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=97.47  E-value=0.0002  Score=72.13  Aligned_cols=107  Identities=20%  Similarity=0.225  Sum_probs=67.1

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC-
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP-  377 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p-  377 (454)
                      ..+.|+++.|||.|.+|++++..|...|++|++++|+.+..     ..+...   .++.+ .+.++|+|+.++|..... 
T Consensus       112 ~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-----~~g~~~---~~l~e-ll~~aDvV~l~~Plt~~g~  182 (380)
T 2o4c_A          112 ADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR-----EPDGEF---VSLER-LLAEADVISLHTPLNRDGE  182 (380)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH-----STTSCC---CCHHH-HHHHCSEEEECCCCCSSSS
T ss_pred             cccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh-----ccCccc---CCHHH-HHHhCCEEEEeccCccccc
Confidence            46889999999999999999999999999999999876432     122222   23333 234689999999875320 


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHC
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAA  414 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~  414 (454)
                      ......+..+   .++++.+++|+.-.+. ++.-+.+|-+.
T Consensus       183 ~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~  223 (380)
T 2o4c_A          183 HPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEG  223 (380)
T ss_dssp             SCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred             cchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHh
Confidence            0011234432   2456666666665432 33333444333

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.47  E-value=4.6e-05  Score=74.08  Aligned_cols=109  Identities=16%  Similarity=0.150  Sum_probs=72.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      .+++.|||+|.+|++++..|.+.|.+|+++||++++++++.+. +...  ..++.+ ... +|+||.|+|....  ... 
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~-g~~~--~~~~~~-~~~-aDvvi~~vp~~~~--~~~-   86 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEA-GATL--ADSVAD-VAA-ADLIHITVLDDAQ--VRE-   86 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHT-TCEE--CSSHHH-HTT-SSEEEECCSSHHH--HHH-
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-CCEE--cCCHHH-HHh-CCEEEEECCChHH--HHH-
Confidence            3579999999999999999999999999999999998888653 2221  223333 345 8999999984210  000 


Q ss_pred             CCC--hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCcee
Q 012866          383 PVS--EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIV  419 (454)
Q Consensus       383 ~i~--~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~  419 (454)
                      .+.  ...++++.+++|..-.+..+  .+.+..+++|..++
T Consensus        87 v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~  127 (296)
T 3qha_A           87 VVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIV  127 (296)
T ss_dssp             HHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEE
T ss_pred             HHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEE
Confidence            010  12356788999998765433  23334445676544

>3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus}

Probab=97.47  E-value=0.00031  Score=66.34  Aligned_cols=77  Identities=30%  Similarity=0.382  Sum_probs=58.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKG  364 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  364 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +.++      .....
T Consensus         5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~i   84 (261)
T 3n74_A            5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGAERVAGEIGDAALAVAADISKEADVDAAVEAALSKFGKV   84 (261)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCC
Confidence            4678999999996 599999999999999999999999999999998876432    22222   1110      12357


Q ss_pred             cEEEECCCCCC
Q 012866          365 AILANATPLGM  375 (454)
Q Consensus       365 divInat~~g~  375 (454)
                      |++||+.....
T Consensus        85 d~li~~Ag~~~   95 (261)
T 3n74_A           85 DILVNNAGIGH   95 (261)
T ss_dssp             CEEEECCCCCC
T ss_pred             CEEEECCccCC
Confidence            99999886543

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=97.46  E-value=0.00013  Score=75.82  Aligned_cols=92  Identities=23%  Similarity=0.209  Sum_probs=62.8

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|++++|+|.|.+|+.++..|..+|++|++++|++.++.+.. ..+....   ++++ .+.++|+||.++.  .   
T Consensus       273 ~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~-~~G~~~~---~l~e-ll~~aDiVi~~~~--t---  342 (494)
T 3d64_A          273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAA-MEGYRVV---TMEY-AADKADIFVTATG--N---  342 (494)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHH-TTTCEEC---CHHH-HTTTCSEEEECSS--S---
T ss_pred             cccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHH-HcCCEeC---CHHH-HHhcCCEEEECCC--c---
Confidence            468899999999999999999999999999999999998753322 2233222   3333 3567899988872  1   


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTP  402 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P  402 (454)
                        ...+..+   .++++.+++|+.-.+
T Consensus       343 --~~lI~~~~l~~MK~gAilINvgrg~  367 (494)
T 3d64_A          343 --YHVINHDHMKAMRHNAIVCNIGHFD  367 (494)
T ss_dssp             --SCSBCHHHHHHCCTTEEEEECSSSS
T ss_pred             --ccccCHHHHhhCCCCcEEEEcCCCc
Confidence              1124433   245666666665543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.46  E-value=5.8e-05  Score=74.79  Aligned_cols=105  Identities=19%  Similarity=0.221  Sum_probs=72.2

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.++++.|||.|.+|++++..|...|++|++++|+.++.+      +..  ...++.+ .+.++|+|+.++|....  
T Consensus       160 ~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~~------g~~--~~~~l~e-ll~~aDvVil~vP~~~~--  228 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPNT------NYT--YYGSVVE-LASNSDILVVACPLTPE--  228 (333)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTTC------CSE--EESCHHH-HHHTCSEEEECSCCCGG--
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhcc------Cce--ecCCHHH-HHhcCCEEEEecCCChH--
Confidence            468899999999999999999999999999999999876532      211  1223333 34578999999987421  


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAG  415 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G  415 (454)
                      + ...+..+   .++++.+++|+.-.+. ++.-+.+|-+.|
T Consensus       229 t-~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g  268 (333)
T 3ba1_A          229 T-THIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEG  268 (333)
T ss_dssp             G-TTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             H-HHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence            1 1234332   3577888988876643 445555555444

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=97.45  E-value=0.0002  Score=68.24  Aligned_cols=48  Identities=25%  Similarity=0.427  Sum_probs=44.4

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      +++||.++|.|++ |+|++++..|++.|++|.+++|+.++++++++++.
T Consensus         4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~   52 (254)
T 4fn4_A            4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDRLNQIVQELR   52 (254)
T ss_dssp             GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHH
Confidence            5889999999975 99999999999999999999999999999988774

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=97.45  E-value=0.00029  Score=69.62  Aligned_cols=36  Identities=19%  Similarity=0.290  Sum_probs=33.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~  336 (454)
                      +++++|+|+|+||.|.+++.+|+..|+ +|+|++++.
T Consensus        32 L~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~   68 (340)
T 3rui_A           32 IKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT   68 (340)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCE
Confidence            568899999999999999999999999 999998864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.44  E-value=0.00026  Score=60.67  Aligned_cols=113  Identities=16%  Similarity=0.062  Sum_probs=72.7

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-----ccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-----PFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..+++|+|.|.+|+.++..|.+.|.+|+++++++++.+.+.+ .+...+     +.+.+....+.++|++|.+++.... 
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~-~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~-   84 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRE-RGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYE-   84 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-TTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHH-
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-cCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHH-
Confidence            357999999999999999999999999999999999988765 343221     1112322235678999999874210 


Q ss_pred             CCCCCCCC--hhcccCCcEEEEEecCCCCCHHHHHHHHCCCc-eeccHH
Q 012866          378 NTDRVPVS--EETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-IVSGVE  423 (454)
Q Consensus       378 ~~~~~~i~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~~~Gl~  423 (454)
                         ...+.  ...+.+...++-.+.+|...   +..++.|+. +++--.
T Consensus        85 ---n~~~~~~a~~~~~~~~iiar~~~~~~~---~~l~~~G~d~vi~p~~  127 (140)
T 3fwz_A           85 ---AGEIVASARAKNPDIEIIARAHYDDEV---AYITERGANQVVMGER  127 (140)
T ss_dssp             ---HHHHHHHHHHHCSSSEEEEEESSHHHH---HHHHHTTCSEEEEHHH
T ss_pred             ---HHHHHHHHHHHCCCCeEEEEECCHHHH---HHHHHCCCCEEECchH
Confidence               00010  01133455566666666544   555678986 444433

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.44  E-value=0.00023  Score=66.38  Aligned_cols=75  Identities=13%  Similarity=0.070  Sum_probs=53.5

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..++++++|||+|+|.+|...+..|.+.|++|+|++++.. ..+++++..+..++. .......+.++|+||.||..
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~-~~~~~~dL~~adLVIaAT~d  101 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKR-KKVGEEDLLNVFFIVVATND  101 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEEC-SCCCGGGSSSCSEEEECCCC
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEE-CCCCHhHhCCCCEEEECCCC
Confidence            3578999999999999999999999999999999998764 456666543322211 11111134678999988853

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=97.42  E-value=4e-05  Score=75.96  Aligned_cols=119  Identities=13%  Similarity=0.151  Sum_probs=84.9

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|+++.|||.|.+|++++..|...|++|++++|+.++.  + +..    ..+.++.+ .+.++|+|+.++|...  
T Consensus       140 ~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~----~~~~~l~e-ll~~aDvV~~~~P~~~--  209 (333)
T 1dxy_A          140 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPD----FDYVSLED-LFKQSDVIDLHVPGIE--  209 (333)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS--C-CTT----CEECCHHH-HHHHCSEEEECCCCCG--
T ss_pred             ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh--h-Hhc----cccCCHHH-HHhcCCEEEEcCCCch--
Confidence            356889999999999999999999999999999999987542  1 111    11223333 3457899999998742  


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHHHH
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMFLR  427 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~mlv~  427 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|...--|++.+-.
T Consensus       210 ~t~-~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~  262 (333)
T 1dxy_A          210 QNT-HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEY  262 (333)
T ss_dssp             GGT-TSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred             hHH-HHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCC
Confidence            111 235443   4678999999988754 677778888877766666766543

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.42  E-value=0.00025  Score=65.46  Aligned_cols=112  Identities=17%  Similarity=0.140  Sum_probs=72.3

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-----ccccccccCCCCccEEEECCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-----PFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      +++|+|+|.+|+.++..|.+.|.+|+++++++++++++++..+...+     +.+.+.+..+.++|+||.+|+....   
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~---   78 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV---   78 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH---
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH---
Confidence            58999999999999999999999999999999999998877654321     2222333246789999998874210   


Q ss_pred             CCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHHHCCCc-eeccHH
Q 012866          380 DRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-IVSGVE  423 (454)
Q Consensus       380 ~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~~~Gl~  423 (454)
                       ...+..  ..+.+..-++=.+.+|.....   .++.|.. +++-..
T Consensus        79 -n~~~~~~a~~~~~~~~iia~~~~~~~~~~---l~~~G~d~vi~p~~  121 (218)
T 3l4b_C           79 -NLFIAQLVMKDFGVKRVVSLVNDPGNMEI---FKKMGITTVLNLTT  121 (218)
T ss_dssp             -HHHHHHHHHHTSCCCEEEECCCSGGGHHH---HHHHTCEECCCHHH
T ss_pred             -HHHHHHHHHHHcCCCeEEEEEeCcchHHH---HHHCCCCEEECHHH
Confidence             000100  112233344445556665544   4567886 444433

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=97.41  E-value=0.0002  Score=74.01  Aligned_cols=93  Identities=22%  Similarity=0.174  Sum_probs=65.3

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.|++++|+|.|.+|++++..|..+|++|++++|+..++.+.. ..+...   .++.+ .+.++|+||.++.  .   
T Consensus       253 ~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~-~~g~~~---~~l~e-ll~~aDiVi~~~~--t---  322 (479)
T 1v8b_A          253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAV-MEGFNV---VTLDE-IVDKGDFFITCTG--N---  322 (479)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHH-TTTCEE---CCHHH-HTTTCSEEEECCS--S---
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHH-HcCCEe---cCHHH-HHhcCCEEEECCC--h---
Confidence            468899999999999999999999999999999999998764322 223222   23333 3567899998862  1   


Q ss_pred             CCCCCCChh---cccCCcEEEEEecCCC
Q 012866          379 TDRVPVSEE---TLRDYQLVFDAVYTPR  403 (454)
Q Consensus       379 ~~~~~i~~~---~l~~~~~v~D~~y~P~  403 (454)
                        ...+..+   .++++.+++|+.-.+.
T Consensus       323 --~~lI~~~~l~~MK~gailiNvgrg~~  348 (479)
T 1v8b_A          323 --VDVIKLEHLLKMKNNAVVGNIGHFDD  348 (479)
T ss_dssp             --SSSBCHHHHTTCCTTCEEEECSSTTT
T ss_pred             --hhhcCHHHHhhcCCCcEEEEeCCCCc
Confidence              1124433   3456777777766543

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.40  E-value=0.0004  Score=66.42  Aligned_cols=88  Identities=16%  Similarity=0.138  Sum_probs=61.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      ++.|||+|.+|++++..|.+.|.+|++++|+.++++.+. +.+.......++.+ . .++|+||.|+|......    .+
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~-~~~D~vi~av~~~~~~~----~~   74 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAV-ERQLVDEAGQDLSL-L-QTAKIIFLCTPIQLILP----TL   74 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH-HTTSCSEEESCGGG-G-TTCSEEEECSCHHHHHH----HH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hCCCCccccCCHHH-h-CCCCEEEEECCHHHHHH----HH
Confidence            589999999999999999999999999999999988875 44432111233444 3 57899999998532110    01


Q ss_pred             C--hhcccCCcEEEEEe
Q 012866          385 S--EETLRDYQLVFDAV  399 (454)
Q Consensus       385 ~--~~~l~~~~~v~D~~  399 (454)
                      .  ...++++.+++|+.
T Consensus        75 ~~l~~~~~~~~~vv~~~   91 (279)
T 2f1k_A           75 EKLIPHLSPTAIVTDVA   91 (279)
T ss_dssp             HHHGGGSCTTCEEEECC
T ss_pred             HHHHhhCCCCCEEEECC
Confidence            1  12355677888863

>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A

Probab=97.39  E-value=0.00028  Score=66.76  Aligned_cols=75  Identities=13%  Similarity=0.135  Sum_probs=56.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----cccccc---ccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFEDI---LNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~l---~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.++++...    .++.+.   ..+      .....|
T Consensus         5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (255)
T 4eso_A            5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARIREEFGPRVHALRSDIADLNEIAVLGAAAGQTLGAID   84 (255)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSSEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCcceEEEccCCCHHHHHHHHHHHHHHhCCCC
Confidence            467899999996 699999999999999999999999999999988876432    122221   110      123679


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus        85 ~lv~nAg~~   93 (255)
T 4eso_A           85 LLHINAGVS   93 (255)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987543

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=97.39  E-value=0.00058  Score=64.64  Aligned_cols=76  Identities=28%  Similarity=0.316  Sum_probs=52.2

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCCc----ccccc---cccc-CCCCccEEE
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAA----RPFED---ILNF-QPEKGAILA  368 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~~~~----~~~~~---l~~~-~~~~~divI  368 (454)
                      ++++||.++|.|++ |+|++++..|++.|++|.+.+|+. +++.+..++.+...    .++.+   .... .-...|++|
T Consensus         5 f~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiLV   84 (247)
T 4hp8_A            5 FSLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPDETLDIIAKDGGNASALLIDFADPLAAKDSFTDAGFDILV   84 (247)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTSTTTTTTSSTTTCCCEEE
T ss_pred             cCCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHhCCCCEEE
Confidence            56899999999975 999999999999999999999985 33334444444332    12221   1110 124579999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      |.....
T Consensus        85 NNAGi~   90 (247)
T 4hp8_A           85 NNAGII   90 (247)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            987543

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.39  E-value=0.00036  Score=67.79  Aligned_cols=43  Identities=21%  Similarity=0.268  Sum_probs=39.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      +.|+|.|||+|-||..++..|+ .|++|+++||++++++++.+.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~   53 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ   53 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH
Confidence            4689999999999999999999 999999999999998888766

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=97.38  E-value=0.00021  Score=68.54  Aligned_cols=107  Identities=16%  Similarity=0.201  Sum_probs=70.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      ++.|||+|.+|++++..|.+ |++|++++|+.++++.+.+. +....+   +.+ .+.++|+||.|+|....  ... .+
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~-g~~~~~---~~~-~~~~~D~vi~~v~~~~~--~~~-v~   73 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE-FGSEAV---PLE-RVAEARVIFTCLPTTRE--VYE-VA   73 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHH-HCCEEC---CGG-GGGGCSEEEECCSSHHH--HHH-HH
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC-CCcccC---HHH-HHhCCCEEEEeCCChHH--HHH-HH
Confidence            68999999999999999999 99999999999999888765 433222   223 34578999999985320  000 01


Q ss_pred             C--hhcccCCcEEEEEecCCC-CC-HHHHHHHHCCCceec
Q 012866          385 S--EETLRDYQLVFDAVYTPR-KT-RLLKDAEAAGAIIVS  420 (454)
Q Consensus       385 ~--~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~~~~~  420 (454)
                      .  ...++++.+++|+..... .+ .+.+.+++.|..+++
T Consensus        74 ~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~  113 (289)
T 2cvz_A           74 EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD  113 (289)
T ss_dssp             HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE
T ss_pred             HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            0  123567788998865432 22 333444555655543

>3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A*

Probab=97.38  E-value=0.00024  Score=66.89  Aligned_cols=74  Identities=31%  Similarity=0.425  Sum_probs=56.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+      .....|
T Consensus         3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (247)
T 3rwb_A            3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGAKAAAASIGKKARAIAADISDPGSVKALFAEIQALTGGID   82 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEECCCCTTCHHHHHHHHHHHHHHHSCCS
T ss_pred             CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            367899999996 699999999999999999999999999999988876432    22222   1110      113679


Q ss_pred             EEEECCCC
Q 012866          366 ILANATPL  373 (454)
Q Consensus       366 ivInat~~  373 (454)
                      ++||+...
T Consensus        83 ~lv~nAg~   90 (247)
T 3rwb_A           83 ILVNNASI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998754

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=97.38  E-value=0.00038  Score=66.69  Aligned_cols=93  Identities=15%  Similarity=0.153  Sum_probs=63.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCC-CccEEEECCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPE-KGAILANATPLGMHPNTD  380 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~-~~divInat~~g~~p~~~  380 (454)
                      +++.|||+|.+|.+++..|.+.|.  +|++++|+.++.+.+. +++.......++.+ .+. ++|+||.|+|......  
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~aDvVilavp~~~~~~--   77 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAK-VEDFSPDFVMLSSPVRTFRE--   77 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCGGG-GGGTCCSEEEECSCHHHHHH--
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHH-HCCCcccccCCHHH-HhcCCCCEEEEcCCHHHHHH--
Confidence            479999999999999999999997  8999999999887654 44442111223333 345 7899999998642210  


Q ss_pred             CCCCC--hhcccCCcEEEEEecCC
Q 012866          381 RVPVS--EETLRDYQLVFDAVYTP  402 (454)
Q Consensus       381 ~~~i~--~~~l~~~~~v~D~~y~P  402 (454)
                        .+.  ...++++.+++|+.-.+
T Consensus        78 --v~~~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           78 --IAKKLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             --HHHHHHHHSCTTCEEEECCSCC
T ss_pred             --HHHHHHhhCCCCcEEEECCCCc
Confidence              011  12356677888876443

>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A

Probab=97.37  E-value=0.00027  Score=66.88  Aligned_cols=75  Identities=35%  Similarity=0.393  Sum_probs=56.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+      ...+.|
T Consensus         5 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   84 (259)
T 4e6p_A            5 RLEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAEIGPAAYAVQMDVTRQDSIDAAIAATVEHAGGLD   84 (259)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHSSSCC
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCCceEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            367899999996 699999999999999999999999999999988876432    12221   1110      123689


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      +|||+....
T Consensus        85 ~lv~~Ag~~   93 (259)
T 4e6p_A           85 ILVNNAALF   93 (259)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCcC
Confidence            999987653

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.36  E-value=0.00039  Score=66.96  Aligned_cols=65  Identities=15%  Similarity=0.148  Sum_probs=50.3

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .++.|||+ |.+|++++..|.+.|.+|++++|+.++++.+.+ ++...   .+..+ ...++|+||.|+|.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~-~g~~~---~~~~~-~~~~aDvVi~av~~   77 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQG-MGIPL---TDGDG-WIDEADVVVLALPD   77 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHH-TTCCC---CCSSG-GGGTCSEEEECSCH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHh-cCCCc---CCHHH-HhcCCCEEEEcCCc
Confidence            58999999 999999999999999999999999999888765 44322   12222 23467888877764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.36  E-value=0.00023  Score=74.34  Aligned_cols=113  Identities=15%  Similarity=0.223  Sum_probs=74.9

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-Hh---cCCc-cccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS-DV---MGAA-RPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~-~~---~~~~-~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..++.|||+|.||.+++..|++.|++|+++||++++++++.+ ..   +... .+.+++.. .++++|+||-++|.+.. 
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~-~l~~aDvVil~Vp~~~~-   87 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFIS-KLKRPRKVMLLVKAGAP-   87 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHH-TSCSSCEEEECCCSSHH-
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHh-cCCCCCEEEEEcCChHH-
Confidence            357999999999999999999999999999999999999887 32   2111 12222211 23458999999986421 


Q ss_pred             CCCCCCCC--hhcccCCcEEEEEecCCC-CC-HHHHHHHHCCCcee
Q 012866          378 NTDRVPVS--EETLRDYQLVFDAVYTPR-KT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       378 ~~~~~~i~--~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~~~~  419 (454)
                       .+. .+.  ...++++.+++|+.-... .| .+.+..++.|..++
T Consensus        88 -v~~-vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v  131 (497)
T 2p4q_A           88 -VDA-LINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFV  131 (497)
T ss_dssp             -HHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             -HHH-HHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCcee
Confidence             010 011  123567889999875533 33 34455566776543

>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*

Probab=97.36  E-value=0.00027  Score=67.03  Aligned_cols=72  Identities=22%  Similarity=0.388  Sum_probs=52.9

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC---cccccc---cccc------CCCCccEEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA---ARPFED---ILNF------QPEKGAILAN  369 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~---~~~~~~---l~~~------~~~~~divIn  369 (454)
                      +|+|||.|+ +|+|++++..|++.|++|.+++|+.+++++++++.+..   ..++.+   ++.+      ...+.|++||
T Consensus         2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~g~iDiLVN   81 (247)
T 3ged_A            2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPNLFYFHGDVADPLTLKKFVEYAMEKLQRIDVLVN   81 (247)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred             CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCEEEEEecCCCHHHHHHHHHHHHHHcCCCCEEEE
Confidence            478999996 59999999999999999999999999999888765321   112211   1110      1356899999


Q ss_pred             CCCCC
Q 012866          370 ATPLG  374 (454)
Q Consensus       370 at~~g  374 (454)
                      ....+
T Consensus        82 NAG~~   86 (247)
T 3ged_A           82 NACRG   86 (247)
T ss_dssp             CCCCC
T ss_pred             CCCCC
Confidence            87554

>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0

Probab=97.35  E-value=0.00053  Score=64.22  Aligned_cols=77  Identities=23%  Similarity=0.284  Sum_probs=57.4

Q ss_pred             CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc--CCCCccEE
Q 012866          298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF--QPEKGAIL  367 (454)
Q Consensus       298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~--~~~~~div  367 (454)
                      ...+++|++||.|+ ||+|++++..|++.|++|++++|+.++.+++.+++....    .++.+   +.++  .....|++
T Consensus         9 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~l   88 (249)
T 3f9i_A            9 MIDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTIEVCNLANKEECSNLISKTSNLDIL   88 (249)
T ss_dssp             CCCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHTCSCCSEE
T ss_pred             cccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhccCccEEEcCCCCHHHHHHHHHhcCCCCEE
Confidence            35678999999996 699999999999999999999999999999988875432    12221   1110  23468999


Q ss_pred             EECCCCC
Q 012866          368 ANATPLG  374 (454)
Q Consensus       368 Inat~~g  374 (454)
                      ||+....
T Consensus        89 i~~Ag~~   95 (249)
T 3f9i_A           89 VCNAGIT   95 (249)
T ss_dssp             EECCC--
T ss_pred             EECCCCC
Confidence            9987543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.35  E-value=0.0005  Score=59.64  Aligned_cols=136  Identities=11%  Similarity=0.094  Sum_probs=80.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHhc--CCcc-----ccccccccCCCCccEEEECCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID-FERAKSLASDVM--GAAR-----PFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt-~~~a~~la~~~~--~~~~-----~~~~l~~~~~~~~divInat~~g  374 (454)
                      +++++|+|+|..|+.++..|.+.|.+|++++|+ .++++.+.+.+.  ...+     +.+.+.+..+.++|+||.+|+..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            467999999999999999999999999999997 577777766552  2111     11223332367899999998632


Q ss_pred             CCCCCCCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHHHCCCc-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 012866          375 MHPNTDRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE  448 (454)
Q Consensus       375 ~~p~~~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~  448 (454)
                      ..    ...+..  ..+.+...++=.+.+|.....   .++.|+. +++- ..+..+.+.  +.-.+.....+.+..
T Consensus        83 ~~----n~~~~~~a~~~~~~~~ii~~~~~~~~~~~---l~~~G~~~vi~p-~~~~~~~l~--~~~~~~~~~~~~~~~  149 (153)
T 1id1_A           83 AD----NAFVVLSAKDMSSDVKTVLAVSDSKNLNK---IKMVHPDIILSP-QLFGSEILA--RVLNGEEINNDMLVS  149 (153)
T ss_dssp             HH----HHHHHHHHHHHTSSSCEEEECSSGGGHHH---HHTTCCSEEECH-HHHHHHHHH--HHHTTCCCCHHHHHH
T ss_pred             HH----HHHHHHHHHHHCCCCEEEEEECCHHHHHH---HHHcCCCEEEcH-HHHHHHHHH--HHHhCCCCcHHHHHH
Confidence            10    000100  112232233335556665443   3567886 4443 334433333  233455666666654

>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}

Probab=97.34  E-value=0.00042  Score=66.51  Aligned_cols=76  Identities=25%  Similarity=0.319  Sum_probs=57.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKG  364 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  364 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+      .....
T Consensus        23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (277)
T 4dqx_A           23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAAVRVANEIGSKAFGVRVDVSSAKDAESMVEKTTAKWGRV  102 (277)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence            4578999999996 699999999999999999999999999999988876432    22222   1110      11367


Q ss_pred             cEEEECCCCC
Q 012866          365 AILANATPLG  374 (454)
Q Consensus       365 divInat~~g  374 (454)
                      |++||+...+
T Consensus       103 D~lv~nAg~~  112 (277)
T 4dqx_A          103 DVLVNNAGFG  112 (277)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCcC
Confidence            9999987654

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=97.34  E-value=0.00021  Score=69.28  Aligned_cols=48  Identities=19%  Similarity=0.335  Sum_probs=41.7

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF------------------ERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~------------------~~a~~la~~~~  347 (454)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.                  .|++.+++.+.
T Consensus        33 kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~diG~~Ka~aa~~~L~   99 (292)
T 3h8v_A           33 KIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQAGLSKVQAAEHTLR   99 (292)
T ss_dssp             GGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBC------------CCTTSBHHHHHHHHHH
T ss_pred             HHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhcCchHHHHHHHHHH
Confidence            3678899999999999999999999999 999999886                  67777766553

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=97.32  E-value=0.0093  Score=60.79  Aligned_cols=133  Identities=19%  Similarity=0.164  Sum_probs=87.5

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHH
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAKS  341 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nR----------t~~~a~~  341 (454)
                      -+.|.+.+++..+.+.         +.++++++|+|.|.|.+|+.++..|.++|++|+ |.++          +.+...+
T Consensus       214 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~  284 (440)
T 3aog_A          214 TGRGVFITAAAAAEKI---------GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLR  284 (440)
T ss_dssp             HHHHHHHHHHHHHHHH---------TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhc---------CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHH
Confidence            4567777777766532         357889999999999999999999999999755 7777          6788888


Q ss_pred             HHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHC
Q 012866          342 LASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAA  414 (454)
Q Consensus       342 la~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~  414 (454)
                      +.++.+.-       .++-+++   .-.++||+|.|+.-+.....     +...| ...+|++-.-.|-....-+.-+++
T Consensus       285 ~~~~~g~i~~y~~a~~i~~~ei---~~~~~DIlvPcA~~n~i~~~-----na~~l-~ak~VvEgAN~p~t~eA~~iL~~~  355 (440)
T 3aog_A          285 HVQEFGGVRGYPKAEPLPAADF---WGLPVEFLVPAALEKQITEQ-----NAWRI-RARIVAEGANGPTTPAADDILLEK  355 (440)
T ss_dssp             HHHHTSSSTTCTTSEECCHHHH---TTCCCSEEEECSSSSCBCTT-----TGGGC-CCSEEECCSSSCBCHHHHHHHHHH
T ss_pred             HHHhcCCcccCCCceEcCchhh---hcCCCcEEEecCCcCccchh-----hHHHc-CCcEEEecCccccCHHHHHHHHHC
Confidence            87765421       1111122   12368999998864432211     11223 457888988777532233334467


Q ss_pred             CCceeccHH
Q 012866          415 GAIIVSGVE  423 (454)
Q Consensus       415 G~~~~~Gl~  423 (454)
                      |+.++++.-
T Consensus       356 GI~~~PD~~  364 (440)
T 3aog_A          356 GVLVVPDVI  364 (440)
T ss_dssp             TCEEECHHH
T ss_pred             CCEEEChHH
Confidence            888875543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.32  E-value=0.00051  Score=66.48  Aligned_cols=42  Identities=21%  Similarity=0.308  Sum_probs=38.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      .++.|||+|.+|.+++..|.+.|.+|++++|+.++++++.+.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~   45 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKN   45 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhC
Confidence            479999999999999999999999999999999999888765

>3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis}

Probab=97.32  E-value=0.00042  Score=66.76  Aligned_cols=76  Identities=25%  Similarity=0.358  Sum_probs=57.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc--CCCCccEEE
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF--QPEKGAILA  368 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~--~~~~~divI  368 (454)
                      .++++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+  .....|+||
T Consensus        12 ~~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~iD~lv   91 (291)
T 3rd5_A           12 PSFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKGEAAARTMAGQVEVRELDLQDLSSVRRFADGVSGADVLI   91 (291)
T ss_dssp             CCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTSSSEEEEEECCTTCHHHHHHHHHTCCCEEEEE
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCeeEEEcCCCCHHHHHHHHHhcCCCCEEE
Confidence            3578999999996 699999999999999999999999999999888765321    22222   1111  234679999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      |+....
T Consensus        92 ~nAg~~   97 (291)
T 3rd5_A           92 NNAGIM   97 (291)
T ss_dssp             ECCCCC
T ss_pred             ECCcCC
Confidence            987653

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=97.32  E-value=0.00046  Score=67.72  Aligned_cols=94  Identities=15%  Similarity=0.129  Sum_probs=64.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      .+++.|||+|.+|.+++..|.+.|.  +|++++|+.++++.+. +.+.......++.+....++|+||.|+|......  
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~-~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~--  109 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE--  109 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHH--
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-HCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHH--
Confidence            4789999999999999999999998  9999999998877654 3443211112222201356899999998653211  


Q ss_pred             CCCCC--hhcccCCcEEEEEecC
Q 012866          381 RVPVS--EETLRDYQLVFDAVYT  401 (454)
Q Consensus       381 ~~~i~--~~~l~~~~~v~D~~y~  401 (454)
                        .+.  ...++++.+|.|+.-.
T Consensus       110 --vl~~l~~~l~~~~iv~d~~Sv  130 (314)
T 3ggo_A          110 --IAKKLSYILSEDATVTDQGSV  130 (314)
T ss_dssp             --HHHHHHHHSCTTCEEEECCSC
T ss_pred             --HHHHHhhccCCCcEEEECCCC
Confidence              111  1236788999998654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=97.31  E-value=0.00051  Score=72.30  Aligned_cols=107  Identities=18%  Similarity=0.192  Sum_probs=72.9

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.++++.|||.|.+|++++..|...|++|++++|+.+..+  +..++....++++    .+.++|+|+.++|..-  .
T Consensus       138 ~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~g~~~~~l~e----~~~~aDvV~l~~P~~~--~  209 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPAR--AAQLGIELLSLDD----LLARADFISVHLPKTP--E  209 (529)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHH--HHHHTCEECCHHH----HHHHCSEEEECCCCST--T
T ss_pred             cccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhH--HHhcCcEEcCHHH----HHhcCCEEEECCCCch--H
Confidence            468899999999999999999999999999999999864322  4455543333332    2356899999999751  1


Q ss_pred             CCCCCCCh---hcccCCcEEEEEecCCC-CCHHHHHHHHC
Q 012866          379 TDRVPVSE---ETLRDYQLVFDAVYTPR-KTRLLKDAEAA  414 (454)
Q Consensus       379 ~~~~~i~~---~~l~~~~~v~D~~y~P~-~T~ll~~A~~~  414 (454)
                      +. ..+..   ..++++.+++|+.-.+. ++.-+.+|-+.
T Consensus       210 t~-~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~  248 (529)
T 1ygy_A          210 TA-GLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITG  248 (529)
T ss_dssp             TT-TCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHT
T ss_pred             HH-HHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHc
Confidence            11 23443   23667889999886544 33333444443

>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}

Probab=97.31  E-value=0.00039  Score=66.72  Aligned_cols=75  Identities=27%  Similarity=0.306  Sum_probs=56.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+      .....|
T Consensus        26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  105 (277)
T 3gvc_A           26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAADAAATKIGCGAAACRVDVSDEQQIIAMVDACVAAFGGVD  105 (277)
T ss_dssp             -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCSSCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCcceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            478999999996 699999999999999999999999999999988886432    12222   1110      123679


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus       106 ~lvnnAg~~  114 (277)
T 3gvc_A          106 KLVANAGVV  114 (277)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987653

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=97.30  E-value=0.00013  Score=72.36  Aligned_cols=69  Identities=19%  Similarity=0.156  Sum_probs=50.5

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ++++++.|||+|.+|++++..|.+.|++|++++|+.+++.+.+.+.+....   ++.+ .+.++|+||.|+|.
T Consensus        14 l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~---~~~e-~~~~aDvVilavp~   82 (338)
T 1np3_A           14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA---DVKT-AVAAADVVMILTPD   82 (338)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE---CHHH-HHHTCSEEEECSCH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc---cHHH-HHhcCCEEEEeCCc
Confidence            456789999999999999999999999999999998776666666654321   2211 12346666666664

>3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A*

Probab=97.29  E-value=0.00045  Score=66.34  Aligned_cols=73  Identities=27%  Similarity=0.312  Sum_probs=55.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +++|++||.|+ ||+|++++..|++.|++|++++|+.++++++.+.++...    .++.+   +..+      .....|+
T Consensus         3 l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~   82 (281)
T 3zv4_A            3 LTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAERLRELEVAHGGNAVGVVGDVRSLQDQKRAAERCLAAFGKIDT   82 (281)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTBTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            56899999996 699999999999999999999999999999988876432    12222   1110      1235799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        83 lvnnAg~   89 (281)
T 3zv4_A           83 LIPNAGI   89 (281)
T ss_dssp             EECCCCC
T ss_pred             EEECCCc
Confidence            9998764

>3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A

Probab=97.28  E-value=0.00049  Score=65.61  Aligned_cols=76  Identities=29%  Similarity=0.371  Sum_probs=57.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKG  364 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~  364 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|.+.+|+.+++++++++++...    .++.+   +..+      .....
T Consensus        23 ~~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i  102 (266)
T 3grp_A           23 FKLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDKLKEIAADLGKDVFVFSANLSDRKSIKQLAEVAEREMEGI  102 (266)
T ss_dssp             TCCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCSSEEEEECCTTSHHHHHHHHHHHHHHHTSC
T ss_pred             hccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceEEEEeecCCHHHHHHHHHHHHHHcCCC
Confidence            4578999999996 699999999999999999999999999999988876532    12222   1110      12367


Q ss_pred             cEEEECCCCC
Q 012866          365 AILANATPLG  374 (454)
Q Consensus       365 divInat~~g  374 (454)
                      |+|||+....
T Consensus       103 D~lvnnAg~~  112 (266)
T 3grp_A          103 DILVNNAGIT  112 (266)
T ss_dssp             CEEEECCCCC
T ss_pred             CEEEECCCCC
Confidence            9999987643

>3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E

Probab=97.28  E-value=0.00035  Score=65.80  Aligned_cols=75  Identities=23%  Similarity=0.259  Sum_probs=56.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+      .....|
T Consensus         6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD   85 (248)
T 3op4_A            6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGAQAISDYLGDNGKGMALNVTNPESIEAVLKAITDEFGGVD   85 (248)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHCCCS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            477899999996 699999999999999999999999999999988775421    12222   1110      123679


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus        86 ~lv~nAg~~   94 (248)
T 3op4_A           86 ILVNNAGIT   94 (248)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987543

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=97.27  E-value=0.00042  Score=66.02  Aligned_cols=77  Identities=22%  Similarity=0.277  Sum_probs=55.9

Q ss_pred             CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh----cCCc----ccccc---cccc------
Q 012866          298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV----MGAA----RPFED---ILNF------  359 (454)
Q Consensus       298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~----~~~~----~~~~~---l~~~------  359 (454)
                      ...+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++    +...    .++.+   +..+      
T Consensus        16 ~~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~   95 (267)
T 1vl8_A           16 VFDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKE   95 (267)
T ss_dssp             -CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHH
Confidence            35688999999996 69999999999999999999999999888877665    3221    12222   1110      


Q ss_pred             CCCCccEEEECCCCC
Q 012866          360 QPEKGAILANATPLG  374 (454)
Q Consensus       360 ~~~~~divInat~~g  374 (454)
                      .....|+|||+....
T Consensus        96 ~~g~iD~lvnnAg~~  110 (267)
T 1vl8_A           96 KFGKLDTVVNAAGIN  110 (267)
T ss_dssp             HHSCCCEEEECCCCC
T ss_pred             HcCCCCEEEECCCcC
Confidence            113679999987653

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=97.27  E-value=0.00094  Score=61.91  Aligned_cols=72  Identities=19%  Similarity=0.289  Sum_probs=52.7

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCc----ccccc---cccc------CCCCc
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM----GAA----RPFED---ILNF------QPEKG  364 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~----~~~----~~~~~---l~~~------~~~~~  364 (454)
                      +|+++|.|+ ||.|++++..|.+.|++|.++.|+.++.+++++++.    ...    .++.+   +.++      .....
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   81 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGYALALGARSVDRLEKIAHELMQEQGVEVFYHHLDVSKAESVEEFSKKVLERFGDV   81 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHCC-HHHHHSSC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCeEEEEEeccCCHHHHHHHHHHHHHhcCCC
Confidence            678999996 699999999999999999999999999888876653    221    12222   1110      11367


Q ss_pred             cEEEECCCCC
Q 012866          365 AILANATPLG  374 (454)
Q Consensus       365 divInat~~g  374 (454)
                      |++||+...+
T Consensus        82 d~li~~Ag~~   91 (235)
T 3l77_A           82 DVVVANAGLG   91 (235)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCccc
Confidence            9999987654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.27  E-value=0.00037  Score=67.69  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=36.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      ++|.|||+|.+|.+++..|++.|++|++++|+.+++++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~   54 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   54 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence            689999999999999999999999999999999887764

>3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A*

Probab=97.26  E-value=0.0011  Score=61.73  Aligned_cols=75  Identities=27%  Similarity=0.319  Sum_probs=55.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccc---cccc--CCCCccEEEEC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFED---ILNF--QPEKGAILANA  370 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~~~---l~~~--~~~~~divIna  370 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.. ..  .++.+   +...  .....|+|||+
T Consensus         4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 3d3w_A            4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCCEEEEeCCCHHHHHHHHHHcCCCCEEEEC
Confidence            367899999997 7999999999999999999999999998888776532 11  12222   1110  12357999998


Q ss_pred             CCCC
Q 012866          371 TPLG  374 (454)
Q Consensus       371 t~~g  374 (454)
                      ....
T Consensus        84 Ag~~   87 (244)
T 3d3w_A           84 AAVA   87 (244)
T ss_dssp             CCCC
T ss_pred             CccC
Confidence            7643

>1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A*

Probab=97.25  E-value=0.00043  Score=65.32  Aligned_cols=74  Identities=26%  Similarity=0.261  Sum_probs=55.0

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +...      .....|+
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~   82 (254)
T 1hdc_A            3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVDG   82 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHHcCCCCE
Confidence            56899999996 799999999999999999999999999988887764321    12221   1110      1136899


Q ss_pred             EEECCCCC
Q 012866          367 LANATPLG  374 (454)
Q Consensus       367 vInat~~g  374 (454)
                      +||+....
T Consensus        83 lv~nAg~~   90 (254)
T 1hdc_A           83 LVNNAGIS   90 (254)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCC
Confidence            99987643

>3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens}

Probab=97.24  E-value=0.00039  Score=65.84  Aligned_cols=75  Identities=21%  Similarity=0.287  Sum_probs=55.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++....    .++.+   +...      .....|
T Consensus         9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~v~~~~~~~~~~~g~iD   88 (263)
T 3ak4_A            9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAAQAVVAGLENGGFAVEVDVTKRASVDAAMQKAIDALGGFD   88 (263)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCTTCCEEEECCTTCHHHHHHHHHHHHHHHTCCC
T ss_pred             CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHHHHHcCCCC
Confidence            467899999996 699999999999999999999999999888877653211    12221   1110      112689


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      +|||+....
T Consensus        89 ~lv~~Ag~~   97 (263)
T 3ak4_A           89 LLCANAGVS   97 (263)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCcC
Confidence            999987643

>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}

Probab=97.22  E-value=0.00036  Score=66.81  Aligned_cols=75  Identities=20%  Similarity=0.312  Sum_probs=55.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+.+|.+||.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +.++      .....|
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD  104 (272)
T 4dyv_A           25 KTGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQETAAEIGDDALCVPTDVTDPDSVRALFTATVEKFGRVD  104 (272)
T ss_dssp             ---CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEEEECCTTSHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            356889999996 699999999999999999999999999999988876432    12222   1110      123689


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus       105 ~lVnnAg~~  113 (272)
T 4dyv_A          105 VLFNNAGTG  113 (272)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999988654

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=97.22  E-value=0.00013  Score=74.14  Aligned_cols=116  Identities=13%  Similarity=0.205  Sum_probs=77.7

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.||++.|||.|.+|++++..|..+|++|+.++|+.....      + ......++++ .+.++|+|+.++|..  +
T Consensus       151 ~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~------~-~~~~~~sl~e-ll~~aDvV~lhvPlt--~  220 (416)
T 3k5p_A          151 SREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQY------G-NVKPAASLDE-LLKTSDVVSLHVPSS--K  220 (416)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCB------T-TBEECSSHHH-HHHHCSEEEECCCC----
T ss_pred             CccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhcc------c-CcEecCCHHH-HHhhCCEEEEeCCCC--H
Confidence            3578899999999999999999999999999999999743210      0 1111223333 345689999999874  2


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHH
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                      .+ ...+..+   .++++.+++|+.-.+. ++.-+.+|-+.|...--|++.
T Consensus       221 ~T-~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDV  270 (416)
T 3k5p_A          221 ST-SKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDV  270 (416)
T ss_dssp             ----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECC
T ss_pred             HH-hhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCC
Confidence            21 1235543   3578888989887654 677777777776544444443

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=97.21  E-value=0.013  Score=59.49  Aligned_cols=129  Identities=22%  Similarity=0.246  Sum_probs=87.5

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHH
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAKS  341 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nR----------t~~~a~~  341 (454)
                      -+.|.+.+++..+.+.         +.++++++|+|.|.|.+|+.++..|.++|++|+ |.++          +.+...+
T Consensus       197 Tg~Gv~~~~~~~~~~~---------g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~  267 (419)
T 3aoe_E          197 AGLGALLVLEALAKRR---------GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLS  267 (419)
T ss_dssp             HHHHHHHHHHHHHHHH---------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHhc---------CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHH
Confidence            4567777777766532         357899999999999999999999999999766 8888          8888888


Q ss_pred             HHHHhcCC---ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecCCCCCHHHHHHHHCC
Q 012866          342 LASDVMGA---ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPRKTRLLKDAEAAG  415 (454)
Q Consensus       342 la~~~~~~---~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~P~~T~ll~~A~~~G  415 (454)
                      +.++.+.-   ..+-+++-   ...+|+++.|..-+.        +..+   .+ ...+|++-.-.|-...--+.-+++|
T Consensus       268 ~~~~~g~v~~~~~~~~e~~---~~~~DVliP~A~~n~--------i~~~~A~~l-~ak~V~EgAN~p~t~~A~~~L~~~G  335 (419)
T 3aoe_E          268 AYEATGSLPRLDLAPEEVF---GLEAEVLVLAAREGA--------LDGDRARQV-QAQAVVEVANFGLNPEAEAYLLGKG  335 (419)
T ss_dssp             HHHHHSSCSCCCBCTTTGG---GSSCSEEEECSCTTC--------BCHHHHTTC-CCSEEEECSTTCBCHHHHHHHHHHT
T ss_pred             HHHhhCCcceeeccchhhh---ccCceEEEecccccc--------cccchHhhC-CceEEEECCCCcCCHHHHHHHHHCC
Confidence            88776521   11112221   136899998875321        3322   23 4578999987775322233344578


Q ss_pred             CceeccH
Q 012866          416 AIIVSGV  422 (454)
Q Consensus       416 ~~~~~Gl  422 (454)
                      +.++++.
T Consensus       336 i~~~PD~  342 (419)
T 3aoe_E          336 ALVVPDL  342 (419)
T ss_dssp             CEEECHH
T ss_pred             CEEECHH
Confidence            8877543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=97.21  E-value=0.00036  Score=66.93  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=56.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QP  361 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~  361 (454)
                      .++++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++..   ..    .++.+   +.++      ..
T Consensus        28 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           28 FDLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDALQVVADEIAGVGGKALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             GCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            3578999999996 6999999999999999999999999998888777632   11    12222   1110      11


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus       108 g~iD~lvnnAg~~  120 (276)
T 3r1i_A          108 GGIDIAVCNAGIV  120 (276)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999987653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=97.21  E-value=0.0015  Score=63.59  Aligned_cols=74  Identities=14%  Similarity=0.050  Sum_probs=54.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh----cCC-----ccccc---cccccCCCCccE
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV----MGA-----ARPFE---DILNFQPEKGAI  366 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~----~~~-----~~~~~---~l~~~~~~~~di  366 (454)
                      ..+++++||.|+ |+.|++++..|.+.|++|+++.|+.++.+.+.+.+    +..     ..++.   .+.+ ...+.|+
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~   86 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE-VIKGAAG   86 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT-TTTTCSE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHH-HHcCCCE
Confidence            356899999997 89999999999999999999999998877765543    111     11222   2333 3457899


Q ss_pred             EEECCCCC
Q 012866          367 LANATPLG  374 (454)
Q Consensus       367 vInat~~g  374 (454)
                      ||++....
T Consensus        87 vih~A~~~   94 (342)
T 1y1p_A           87 VAHIASVV   94 (342)
T ss_dssp             EEECCCCC
T ss_pred             EEEeCCCC
Confidence            99987643

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.20  E-value=0.00037  Score=69.27  Aligned_cols=113  Identities=16%  Similarity=0.174  Sum_probs=76.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GAR-VVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~-v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      .++.|||+|.+|+..+.+|.+. +++ +.+++|+.+++++++++++... .+++++-+  -.+.|+|+.|||.....   
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~--~~~~D~V~i~tp~~~h~---   80 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLA--REDVEMVIITVPNDKHA---   80 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHH--CSSCCEEEECSCTTSHH---
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhc--CCCCCEEEEeCChHHHH---
Confidence            4799999999999999999887 666 5599999999999999987643 23333321  24689999999965431   


Q ss_pred             CCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                        .+-...+..+.-|+  +=+|.-      -.+.+.|+++|..+.-|....
T Consensus        81 --~~~~~al~~gk~vl--~EKP~~~~~~~~~~l~~~a~~~~~~~~v~~~~R  127 (354)
T 3db2_A           81 --EVIEQCARSGKHIY--VEKPISVSLDHAQRIDQVIKETGVKFLCGHSSR  127 (354)
T ss_dssp             --HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHHCCCEEEECGGG
T ss_pred             --HHHHHHHHcCCEEE--EccCCCCCHHHHHHHHHHHHHcCCeEEEeechh
Confidence              12233455554333  224532      246677788888776665543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=97.20  E-value=0.00052  Score=65.05  Aligned_cols=47  Identities=19%  Similarity=0.192  Sum_probs=41.5

Q ss_pred             CCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++||.++|.|++   |+|++++..|++.|++|.++.|+.+..+++++.+
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~   52 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLL   52 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            4789999999974   8999999999999999999999988777776655

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.20  E-value=0.0019  Score=63.49  Aligned_cols=95  Identities=18%  Similarity=0.083  Sum_probs=59.7

Q ss_pred             CceEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHH--HHHHHHHHhcCCccccccccccCC-CCccEEEECCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFE--RAKSLASDVMGAARPFEDILNFQP-EKGAILANATPLGMHPN  378 (454)
Q Consensus       303 ~k~vlViGaGG~ara-i~~~L~~~G~~v~i~nRt~~--~a~~la~~~~~~~~~~~~l~~~~~-~~~divInat~~g~~p~  378 (454)
                      .+++.|||.||+|.+ ++..|.++|++|++++++..  ..++|.+ .+.....-.+... .. .++|+||-+.  |    
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~-~gi~v~~g~~~~~-l~~~~~d~vV~Sp--g----   75 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEA-LGIDVYEGFDAAQ-LDEFKADVYVIGN--V----   75 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHH-TTCEEEESCCGGG-GGSCCCSEEEECT--T----
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHh-CCCEEECCCCHHH-cCCCCCCEEEECC--C----
Confidence            478999999999996 78889999999999998642  3333332 1221100000000 00 1234444211  1    


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLR  427 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~  427 (454)
                                            -|.+.|.+++|+++|++++.-.++|.+
T Consensus        76 ----------------------i~~~~p~~~~a~~~gi~v~~~~e~~~~  102 (326)
T 3eag_A           76 ----------------------AKRGMDVVEAILNLGLPYISGPQWLSE  102 (326)
T ss_dssp             ----------------------CCTTCHHHHHHHHTTCCEEEHHHHHHH
T ss_pred             ----------------------cCCCCHHHHHHHHcCCcEEeHHHHHHH
Confidence                                  144678899999999999998887754

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=97.19  E-value=0.00036  Score=69.63  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=32.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~  336 (454)
                      +++++|+|+|+||.|..++.+|+..|+ +|+|++++.
T Consensus       116 L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~  152 (353)
T 3h5n_A          116 LKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQ  152 (353)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCB
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCc
Confidence            346899999999999999999999999 999999863

>2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A*

Probab=97.19  E-value=0.00074  Score=63.20  Aligned_cols=76  Identities=21%  Similarity=0.288  Sum_probs=55.9

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-----ccccc---ccccC-----CCCc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-----RPFED---ILNFQ-----PEKG  364 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-----~~~~~---l~~~~-----~~~~  364 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.++++...     .++.+   +....     ....
T Consensus         7 ~~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~i   86 (254)
T 2wsb_A            7 FRLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAALDRAAQELGAAVAARIVADVTDAEAMTAAAAEAEAVAPV   86 (254)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEEECCTTCHHHHHHHHHHHHHHSCC
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcccceeEEEEecCCHHHHHHHHHHHHhhCCC
Confidence            3467899999996 799999999999999999999999999888877764321     12222   11100     1357


Q ss_pred             cEEEECCCCC
Q 012866          365 AILANATPLG  374 (454)
Q Consensus       365 divInat~~g  374 (454)
                      |+|||+....
T Consensus        87 d~li~~Ag~~   96 (254)
T 2wsb_A           87 SILVNSAGIA   96 (254)
T ss_dssp             CEEEECCCCC
T ss_pred             cEEEECCccC
Confidence            9999988653

>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium}

Probab=97.19  E-value=0.00093  Score=63.84  Aligned_cols=50  Identities=30%  Similarity=0.472  Sum_probs=45.4

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG  348 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~  348 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|++++|+.+++++++++++.
T Consensus        26 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~   76 (281)
T 3ppi_A           26 KQFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKGKALADELGN   76 (281)
T ss_dssp             GGGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT
T ss_pred             hccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCC
Confidence            3578999999996 6999999999999999999999999999999988864

>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0

Probab=97.18  E-value=0.00039  Score=66.34  Aligned_cols=75  Identities=23%  Similarity=0.276  Sum_probs=57.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +.++      .....|
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   87 (271)
T 3tzq_B            8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDLAGAAASVGRGAVHHVVDLTNEVSVRALIDFTIDTFGRLD   87 (271)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence            578999999996 699999999999999999999999999999888876432    22222   1110      123679


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus        88 ~lv~nAg~~   96 (271)
T 3tzq_B           88 IVDNNAAHS   96 (271)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.18  E-value=0.00091  Score=65.92  Aligned_cols=68  Identities=24%  Similarity=0.303  Sum_probs=51.1

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC--------ccccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA--------ARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~--------~~~~~~l~~~~~~~~divInat~~  373 (454)
                      -++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.-...        .....+..+  ...+|+||-|++.
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~aDvVil~vk~   90 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE--IKKEDILVIAIPV   90 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG--CCTTEEEEECSCG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH--hcCCCEEEEECCH
Confidence            5799999999999999999999999999999999999987752100        001112222  3567888888874

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=97.17  E-value=0.00014  Score=71.24  Aligned_cols=108  Identities=13%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC--HHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID--FERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt--~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      ..++.|||+|.+|.+++..|.+.|+ +|+++||+  .++.+.+. +.+...  ..++.+ .+.++|+||.|+|...... 
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~-~~g~~~--~~~~~e-~~~~aDvVi~~vp~~~~~~-   98 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAE-ELGVSC--KASVAE-VAGECDVIFSLVTAQAALE-   98 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHH-HTTCEE--CSCHHH-HHHHCSEEEECSCTTTHHH-
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHH-HCCCEE--eCCHHH-HHhcCCEEEEecCchhHHH-
Confidence            4689999999999999999999999 99999997  45555443 344322  122222 2346899999998643211 


Q ss_pred             CCCCCC--hhcccCCcEEEEEecCCCCC-H-HHHHHHHC--CCce
Q 012866          380 DRVPVS--EETLRDYQLVFDAVYTPRKT-R-LLKDAEAA--GAII  418 (454)
Q Consensus       380 ~~~~i~--~~~l~~~~~v~D~~y~P~~T-~-ll~~A~~~--G~~~  418 (454)
                         .+.  ...++++.+++|..-.+..| . +.+..+++  |..+
T Consensus        99 ---~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~  140 (312)
T 3qsg_A           99 ---VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQY  140 (312)
T ss_dssp             ---HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEE
T ss_pred             ---HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeE
Confidence               111  12356788999997664432 2 22334445  6543

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=97.17  E-value=0.00041  Score=65.44  Aligned_cols=75  Identities=17%  Similarity=0.241  Sum_probs=55.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.++++...    .++.+   +.++      .....|
T Consensus         9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   88 (265)
T 2o23_A            9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNNCVFAPADVTSEKDVQTALALAKGKFGRVD   88 (265)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHHhCCceEEEEcCCCCHHHHHHHHHHHHHHCCCCC
Confidence            467899999996 699999999999999999999999988888887775422    12221   1110      112689


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      +|||+....
T Consensus        89 ~li~~Ag~~   97 (265)
T 2o23_A           89 VAVNCAGIA   97 (265)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCccC
Confidence            999987654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.16  E-value=0.00053  Score=67.22  Aligned_cols=108  Identities=15%  Similarity=0.080  Sum_probs=72.0

Q ss_pred             eEEEEccchhHH-HHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcCCc--cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGR-ALAFGAKSR-GARVVIFDIDFERAKSLASDVMGAA--RPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       305 ~vlViGaGG~ar-ai~~~L~~~-G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ++.|||+|.+|+ +.+.+|.+. +++|+|++|+.+++++++++++...  .+..+  . ...+.|+|+.|||.....   
T Consensus         4 ~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~--~-l~~~~D~V~i~tp~~~h~---   77 (323)
T 1xea_A            4 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRD--V-LQYGVDAVMIHAATDVHS---   77 (323)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTG--G-GGGCCSEEEECSCGGGHH---
T ss_pred             EEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHH--H-hhcCCCEEEEECCchhHH---
Confidence            689999999998 588888775 5677799999999999999987642  22222  1 114689999999854321   


Q ss_pred             CCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHH
Q 012866          381 RVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       381 ~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~  423 (454)
                        .+-...++.+. ++++   +|.-      ..+.+.|++.|..+..|..
T Consensus        78 --~~~~~al~~Gk~V~~E---KP~~~~~~~~~~l~~~a~~~g~~~~v~~~  122 (323)
T 1xea_A           78 --TLAAFFLHLGIPTFVD---KPLAASAQECENLYELAEKHHQPLYVGFN  122 (323)
T ss_dssp             --HHHHHHHHTTCCEEEE---SCSCSSHHHHHHHHHHHHHTTCCEEEECG
T ss_pred             --HHHHHHHHCCCeEEEe---CCCcCCHHHHHHHHHHHHhcCCeEEEeec
Confidence              12223455443 4444   4432      2466677788887666543

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=97.16  E-value=0.00087  Score=63.33  Aligned_cols=48  Identities=19%  Similarity=0.179  Sum_probs=42.7

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         5 ~~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   53 (260)
T 2ae2_A            5 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQW   53 (260)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578899999996 69999999999999999999999999888877665

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.16  E-value=0.00075  Score=70.16  Aligned_cols=91  Identities=21%  Similarity=0.183  Sum_probs=66.6

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .+.|++|+|+|+|++|+.++..|+..|++|++++|++++++. +...+....++++    .+.++|+||.+++..     
T Consensus       271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~-A~~~Ga~~~~l~e----~l~~aDvVi~atgt~-----  340 (494)
T 3ce6_A          271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQ-AMMEGFDVVTVEE----AIGDADIVVTATGNK-----  340 (494)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH-HHHTTCEECCHHH----HGGGCSEEEECSSSS-----
T ss_pred             CCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHcCCEEecHHH----HHhCCCEEEECCCCH-----
Confidence            567999999999999999999999999999999999988754 3455554333333    245789999988521     


Q ss_pred             CCCCCCh---hcccCCcEEEEEecCC
Q 012866          380 DRVPVSE---ETLRDYQLVFDAVYTP  402 (454)
Q Consensus       380 ~~~~i~~---~~l~~~~~v~D~~y~P  402 (454)
                        ..+..   +.++++.+++++...+
T Consensus       341 --~~i~~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          341 --DIIMLEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             --CSBCHHHHHHSCTTCEEEECSSSG
T ss_pred             --HHHHHHHHHhcCCCcEEEEeCCCC
Confidence              12332   3456777787777654

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.15  E-value=0.0003  Score=68.07  Aligned_cols=109  Identities=17%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      .++.|||+|.+|++++..|.+.|++|++++|++++++++.+. +...  ..++.+ .+.++|+||.|+|....  ... .
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~D~vi~~vp~~~~--~~~-v   77 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQ-GAQA--CENNQK-VAAASDIIFTSLPNAGI--VET-V   77 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTT-TCEE--CSSHHH-HHHHCSEEEECCSSHHH--HHH-H
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHC-CCee--cCCHHH-HHhCCCEEEEECCCHHH--HHH-H
Confidence            579999999999999999999999999999999998887654 3221  122222 23458999999974321  000 0


Q ss_pred             C----C-hhcccCCcEEEEEecCCC-CC-HHHHHHHHCCCcee
Q 012866          384 V----S-EETLRDYQLVFDAVYTPR-KT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       384 i----~-~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~~~~  419 (454)
                      +    . ...++++.+++|+.-... .+ .+.+...+.|..++
T Consensus        78 ~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~  120 (301)
T 3cky_A           78 MNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYV  120 (301)
T ss_dssp             HHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            1    0 124567889999875532 22 34444555676654

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=97.15  E-value=0.00028  Score=66.65  Aligned_cols=75  Identities=21%  Similarity=0.242  Sum_probs=47.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+      .....|
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   83 (257)
T 3tpc_A            4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEEPAAELGAAVRFRNADVTNEADATAALAFAKQEFGHVH   83 (257)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC------------CEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            367899999996 699999999999999999999999999888877765432    12222   1110      123689


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus        84 ~lv~nAg~~   92 (257)
T 3tpc_A           84 GLVNCAGTA   92 (257)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987543

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.15  E-value=0.00015  Score=71.33  Aligned_cols=113  Identities=23%  Similarity=0.227  Sum_probs=75.9

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GARVV-IFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~v~-i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      .++.|||+|.+|+..+.+|.+. +++|+ +++|+.+++++++++++....+++++-+  ..+.|+|+.|||.....    
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~D~V~i~tp~~~h~----   77 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEA--AADIDAVVICTPTDTHA----   77 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHH--CTTCCEEEECSCGGGHH----
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhc--CCCCCEEEEeCCchhHH----
Confidence            4799999999999999999986 56654 8999999999999998765223333321  23689999999864321    


Q ss_pred             CCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHHH
Q 012866          382 VPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                       .+-...+..+.-|+  +=+|.-      -.+.+.|+++|..+.-|..+.
T Consensus        78 -~~~~~al~~gk~v~--~EKP~~~~~~~~~~l~~~a~~~g~~~~v~~~~r  124 (331)
T 4hkt_A           78 -DLIERFARAGKAIF--CEKPIDLDAERVRACLKVVSDTKAKLMVGFNRR  124 (331)
T ss_dssp             -HHHHHHHHTTCEEE--ECSCSCSSHHHHHHHHHHHHHTTCCEEECCGGG
T ss_pred             -HHHHHHHHcCCcEE--EecCCCCCHHHHHHHHHHHHHcCCeEEEccccc
Confidence             12233455444332  224421      346677888888776665543

>1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2

Probab=97.15  E-value=0.0017  Score=60.25  Aligned_cols=75  Identities=24%  Similarity=0.245  Sum_probs=54.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccc---cccc--CCCCccEEEEC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFED---ILNF--QPEKGAILANA  370 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~~~---l~~~--~~~~~divIna  370 (454)
                      .+++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.. ..  .++.+   +.+.  .....|+|||+
T Consensus         4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~~   83 (244)
T 1cyd_A            4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCCcEEecCCCHHHHHHHHHHcCCCCEEEEC
Confidence            467899999996 7999999999999999999999999988888765422 11  12221   2111  12357999998


Q ss_pred             CCCC
Q 012866          371 TPLG  374 (454)
Q Consensus       371 t~~g  374 (454)
                      ....
T Consensus        84 Ag~~   87 (244)
T 1cyd_A           84 AALV   87 (244)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            7643

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=97.14  E-value=0.0007  Score=64.05  Aligned_cols=47  Identities=28%  Similarity=0.509  Sum_probs=41.8

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (263)
T 3ai3_A            4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRLHEAARSL   51 (263)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            367899999996 69999999999999999999999999888877665

>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0

Probab=97.13  E-value=0.0008  Score=62.78  Aligned_cols=72  Identities=19%  Similarity=0.259  Sum_probs=53.7

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divI  368 (454)
                      +|++||.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+      .....|++|
T Consensus         3 ~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id~lv   82 (235)
T 3l6e_A            3 LGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRLQQQELLLGNAVIGIVADLAHHEDVDVAFAAAVEWGGLPELVL   82 (235)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTSHHHHHHHHHHHHHHHCSCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcCCCcEEE
Confidence            578999996 699999999999999999999999999999988775321    12221   1110      123579999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      |+...+
T Consensus        83 nnAg~~   88 (235)
T 3l6e_A           83 HCAGTG   88 (235)
T ss_dssp             EECCCC
T ss_pred             ECCCCC
Confidence            987653

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=97.13  E-value=0.00051  Score=64.29  Aligned_cols=48  Identities=29%  Similarity=0.549  Sum_probs=42.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++++++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         7 ~~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   55 (255)
T 1fmc_A            7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI   55 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            3577899999996 79999999999999999999999999888777665

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.12  E-value=0.0008  Score=64.74  Aligned_cols=91  Identities=16%  Similarity=0.166  Sum_probs=60.9

Q ss_pred             ceEEEEccchhHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~--G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      .++.|||+|.+|.+++..|.+.  |.+|++++|+.++++.+.+ .+.......++.+ .+.++|+||-|+|......   
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~-~g~~~~~~~~~~~-~~~~aDvVilavp~~~~~~---   81 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALE-RGIVDEATADFKV-FAALADVIILAVPIKKTID---   81 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHH-TTSCSEEESCTTT-TGGGCSEEEECSCHHHHHH---
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHH-cCCcccccCCHHH-hhcCCCEEEEcCCHHHHHH---
Confidence            5799999999999999999987  4599999999999887754 3331111223333 3457899999998643210   


Q ss_pred             CCCC--hhc-ccCCcEEEEEec
Q 012866          382 VPVS--EET-LRDYQLVFDAVY  400 (454)
Q Consensus       382 ~~i~--~~~-l~~~~~v~D~~y  400 (454)
                       .+.  ... ++++.+++|+.-
T Consensus        82 -v~~~l~~~~l~~~~ivi~~~~  102 (290)
T 3b1f_A           82 -FIKILADLDLKEDVIITDAGS  102 (290)
T ss_dssp             -HHHHHHTSCCCTTCEEECCCS
T ss_pred             -HHHHHHhcCCCCCCEEEECCC
Confidence             011  123 456677777643

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.12  E-value=0.00032  Score=69.71  Aligned_cols=112  Identities=21%  Similarity=0.228  Sum_probs=75.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSR--GAR-VVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~--G~~-v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..++.|||+|.+|+..+.+|.+.  +++ +.+++|+.+++++++++++... .+++++-+  -.+.|+|+.|||..... 
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~-   89 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLA--QTDADIVILTTPSGLHP-   89 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHH--HCCCSEEEECSCGGGHH-
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhc--CCCCCEEEECCCcHHHH-
Confidence            35899999999999999999987  566 5599999999999999987632 23333321  14689999999865321 


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~  423 (454)
                          .+-...+..+.-|+  +=+|.-      -.+.+.|++.|..+.-|..
T Consensus        90 ----~~~~~al~~gk~v~--~EKP~a~~~~~~~~l~~~a~~~g~~~~v~~~  134 (354)
T 3q2i_A           90 ----TQSIECSEAGFHVM--TEKPMATRWEDGLEMVKAADKAKKHLFVVKQ  134 (354)
T ss_dssp             ----HHHHHHHHTTCEEE--ECSSSCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred             ----HHHHHHHHCCCCEE--EeCCCcCCHHHHHHHHHHHHHhCCeEEEEEc
Confidence                12233455444332  224532      2456677788887665544

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.12  E-value=0.0002  Score=71.23  Aligned_cols=113  Identities=16%  Similarity=0.197  Sum_probs=75.6

Q ss_pred             CceEEEEccchhHH-HHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGR-ALAFGAKSR-GARV-VIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       303 ~k~vlViGaGG~ar-ai~~~L~~~-G~~v-~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      .-++.|||+|.+|+ ..+.+|.+. +++| .|++|+.+++++++++++... .+++++-+  -.+.|+|+.|||..... 
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~-  103 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLE--RDDVDAVYVPLPAVLHA-  103 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHT--CTTCSEEEECCCGGGHH-
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhc--CCCCCEEEECCCcHHHH-
Confidence            45899999999998 788889887 5665 599999999999999997643 23343321  24689999999865321 


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~m  424 (454)
                          .+....+..+.-|+  +=+|.-      -.+.+.|+++|..+.-|..+
T Consensus       104 ----~~~~~al~aGk~Vl--~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~  149 (350)
T 3rc1_A          104 ----EWIDRALRAGKHVL--AEKPLTTDRPQAERLFAVARERGLLLMENFMF  149 (350)
T ss_dssp             ----HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHTTCCEEEECGG
T ss_pred             ----HHHHHHHHCCCcEE--EeCCCCCCHHHHHHHHHHHHHhCCEEEEEecc
Confidence                12233455544332  224532      24567777888876666543

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=97.12  E-value=0.00068  Score=65.78  Aligned_cols=75  Identities=23%  Similarity=0.302  Sum_probs=55.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CCC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QPE  362 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  362 (454)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++++++++++..   ..    +++.+   +.++      ...
T Consensus        28 ~l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  107 (301)
T 3tjr_A           28 GFDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLG  107 (301)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCC
Confidence            478899999996 6999999999999999999999999999988877632   11    22222   1110      113


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|+|||+....
T Consensus       108 ~id~lvnnAg~~  119 (301)
T 3tjr_A          108 GVDVVFSNAGIV  119 (301)
T ss_dssp             SCSEEEECCCCC
T ss_pred             CCCEEEECCCcC
Confidence            679999988654

>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A*

Probab=97.12  E-value=0.00068  Score=64.25  Aligned_cols=75  Identities=24%  Similarity=0.257  Sum_probs=55.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++....    .++.+   +.+.      ...+.|
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD   83 (260)
T 1nff_A            4 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   83 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhcCceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence            367899999996 699999999999999999999999999888877764321    12221   1110      113689


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      +|||+....
T Consensus        84 ~lv~~Ag~~   92 (260)
T 1nff_A           84 VLVNNAGIL   92 (260)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987653

>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}

Probab=97.11  E-value=0.0011  Score=61.30  Aligned_cols=71  Identities=14%  Similarity=0.213  Sum_probs=51.9

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc---CCCCccEEEECCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF---QPEKGAILANATP  372 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~---~~~~~divInat~  372 (454)
                      |++||.|+ ||.|++++..|++.|++|++++|+.++++++.++++...    .++.+   +..+   .....|+|||+..
T Consensus         2 k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~d~lv~~Ag   81 (230)
T 3guy_A            2 SLIVITGASSGLGAELAKLYDAEGKATYLTGRSESKLSTVTNCLSNNVGYRARDLASHQEVEQLFEQLDSIPSTVVHSAG   81 (230)
T ss_dssp             -CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTCSSCCCEEECCTTCHHHHHHHHHSCSSCCSEEEECCC
T ss_pred             CEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhccCeEeecCCCHHHHHHHHHHHhhcCCEEEEeCC
Confidence            56899996 699999999999999999999999999999988875432    12221   1110   1233499999886


Q ss_pred             CC
Q 012866          373 LG  374 (454)
Q Consensus       373 ~g  374 (454)
                      .+
T Consensus        82 ~~   83 (230)
T 3guy_A           82 SG   83 (230)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=97.11  E-value=0.00038  Score=67.27  Aligned_cols=109  Identities=13%  Similarity=0.127  Sum_probs=71.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      .++.|||+|.+|++++..|.+.|.+|++++|+.++++.+.+. +...  ..++.+ .+.++|+||.|+|....  ... .
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~D~vi~~v~~~~~--~~~-~   78 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA-GAET--ASTAKA-IAEQCDVIITMLPNSPH--VKE-V   78 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT-TCEE--CSSHHH-HHHHCSEEEECCSSHHH--HHH-H
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHC-CCee--cCCHHH-HHhCCCEEEEECCCHHH--HHH-H
Confidence            379999999999999999999999999999999999888764 3221  122222 23458999999984210  000 0


Q ss_pred             C---C--hhcccCCcEEEEEecCCCC-C-HHHHHHHHCCCcee
Q 012866          384 V---S--EETLRDYQLVFDAVYTPRK-T-RLLKDAEAAGAIIV  419 (454)
Q Consensus       384 i---~--~~~l~~~~~v~D~~y~P~~-T-~ll~~A~~~G~~~~  419 (454)
                      +   .  ...+.++.+++|+.-.+.. + .+.+...+.|..++
T Consensus        79 ~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  121 (299)
T 1vpd_A           79 ALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEML  121 (299)
T ss_dssp             HHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEE
T ss_pred             HhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence            1   1  1345678889998655432 2 33344455566544

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=97.11  E-value=0.00044  Score=66.14  Aligned_cols=76  Identities=29%  Similarity=0.349  Sum_probs=56.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QP  361 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  361 (454)
                      .++++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++.   ...    .++.+   +.++      ..
T Consensus        22 ~~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           22 FDLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRVAQTVQEFRNVGHDAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             GCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            3578999999996 699999999999999999999999999998887763   111    12222   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus       102 g~iD~lv~nAg~~  114 (271)
T 4ibo_A          102 IDVDILVNNAGIQ  114 (271)
T ss_dssp             CCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3689999987653

>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2

Probab=97.10  E-value=0.00083  Score=63.25  Aligned_cols=75  Identities=19%  Similarity=0.236  Sum_probs=55.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++.++++++++...    .++.+   +...      .....|
T Consensus         3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id   82 (253)
T 1hxh_A            3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLN   82 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEEEccCCCHHHHHHHHHHHHHHcCCCC
Confidence            367899999996 699999999999999999999999999998888775321    12222   1110      113569


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      +|||+....
T Consensus        83 ~lv~~Ag~~   91 (253)
T 1hxh_A           83 VLVNNAGIL   91 (253)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987653

>1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=97.10  E-value=0.00067  Score=63.62  Aligned_cols=74  Identities=22%  Similarity=0.191  Sum_probs=54.5

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEEE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~divI  368 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...  .++.+   +...      .....|++|
T Consensus         3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~id~lv   82 (245)
T 1uls_A            3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (245)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCEEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            46789999996 699999999999999999999999999988887664221  12221   1110      113579999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      |+....
T Consensus        83 n~Ag~~   88 (245)
T 1uls_A           83 HYAGIT   88 (245)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            987643

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=97.09  E-value=0.00051  Score=64.98  Aligned_cols=48  Identities=33%  Similarity=0.459  Sum_probs=43.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         8 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (256)
T 3gaf_A            8 FHLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGAEAVAAAI   56 (256)
T ss_dssp             TCCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4678999999996 69999999999999999999999999998887766

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=97.07  E-value=0.0016  Score=61.97  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=42.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   65 (273)
T 1ae1_A           17 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIW   65 (273)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578899999996 69999999999999999999999999888877665

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=97.06  E-value=0.00074  Score=64.50  Aligned_cols=47  Identities=28%  Similarity=0.389  Sum_probs=42.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.++.+++++++
T Consensus        29 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   76 (279)
T 1xg5_A           29 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAEC   76 (279)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHH
Confidence            467899999986 79999999999999999999999999888877665

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.06  E-value=0.00058  Score=70.96  Aligned_cols=110  Identities=19%  Similarity=0.300  Sum_probs=71.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----C-cccccccccc--CCCCccEEEECCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----A-ARPFEDILNF--QPEKGAILANATPLGMHP  377 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~-~~~~~~l~~~--~~~~~divInat~~g~~p  377 (454)
                      ++.|||+|.+|++++..|.+.|.+|+++||+.++++++.++++.    . .....++.++  .++++|+||-++|.+.. 
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~-   81 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA-   81 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH-
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH-
Confidence            58999999999999999999999999999999999999887551    1 1111222221  12358999999987411 


Q ss_pred             CCCCCCCC--hhcccCCcEEEEEecCC-CCC-HHHHHHHHCCCc
Q 012866          378 NTDRVPVS--EETLRDYQLVFDAVYTP-RKT-RLLKDAEAAGAI  417 (454)
Q Consensus       378 ~~~~~~i~--~~~l~~~~~v~D~~y~P-~~T-~ll~~A~~~G~~  417 (454)
                       .+. .+.  ...++++.+++|+.-.. ..| .+.+..++.|..
T Consensus        82 -v~~-vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           82 -TDS-TIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             -HHH-HHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             -HHH-HHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence             010 111  12356778899986443 233 333444455654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.06  E-value=0.00068  Score=70.32  Aligned_cols=111  Identities=19%  Similarity=0.213  Sum_probs=71.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc-cccccccccCCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA-RPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~-~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .++.|||+|.+|++++..|.+.|++|+++||+.++++++.++++   ... .+.+++.. .++++|+||-++|.+..  .
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~-~l~~aDvVilavp~~~~--v   82 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVG-SLEKPRRIMLMVQAGAA--T   82 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHH-TBCSSCEEEECCCTTHH--H
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHh-hccCCCEEEEEccCchH--H
Confidence            57999999999999999999999999999999999999988752   111 12222211 12358999999986421  0


Q ss_pred             CCCCCC--hhcccCCcEEEEEecCC-CCCH-HHHHHHHCCCce
Q 012866          380 DRVPVS--EETLRDYQLVFDAVYTP-RKTR-LLKDAEAAGAII  418 (454)
Q Consensus       380 ~~~~i~--~~~l~~~~~v~D~~y~P-~~T~-ll~~A~~~G~~~  418 (454)
                      +. .+.  ...++++.+++|+.-.. ..|. +.+..++.|..+
T Consensus        83 ~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~  124 (474)
T 2iz1_A           83 DA-TIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINF  124 (474)
T ss_dssp             HH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEE
T ss_pred             HH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeE
Confidence            00 011  12356778888876442 2332 333333456543

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.06  E-value=0.00044  Score=63.00  Aligned_cols=68  Identities=18%  Similarity=0.155  Sum_probs=49.1

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccccccccCCCCccEEEECCCCC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~l~~~~~~~~divInat~~g  374 (454)
                      +++|+|+ |++|++++..|.+.|.+|+++.|+.++++.+..  +...  .++.+.......+.|+||++.+..
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   72 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHK--DINILQKDIFDLTLSDLSDQNVVVDAYGIS   72 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCS--SSEEEECCGGGCCHHHHTTCSEEEECCCSS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccC--CCeEEeccccChhhhhhcCCCEEEECCcCC
Confidence            6899995 899999999999999999999999988776541  1111  122222111345789999988653

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.06  E-value=0.001  Score=64.89  Aligned_cols=70  Identities=20%  Similarity=0.228  Sum_probs=53.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhcC------Cccc--cccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG--ARVVIFDIDFERAKSLASDVMG------AARP--FEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G--~~v~i~nRt~~~a~~la~~~~~------~~~~--~~~l~~~~~~~~divInat~~  373 (454)
                      .++.|||+|.+|.+++..|+..|  .+|++++|+.++++.++.+++.      ....  ..+. + .+.++|+||.|++.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~-~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-A-ALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-G-GGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-H-HhCCCCEEEEecCC
Confidence            36899999999999999999988  4899999999999988865531      0011  1333 2 35689999999986


Q ss_pred             CC
Q 012866          374 GM  375 (454)
Q Consensus       374 g~  375 (454)
                      ..
T Consensus        80 ~~   81 (309)
T 1hyh_A           80 IK   81 (309)
T ss_dssp             GG
T ss_pred             cc
Confidence            44

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.05  E-value=0.00046  Score=70.07  Aligned_cols=118  Identities=19%  Similarity=0.249  Sum_probs=78.6

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.||++.|||.|.+|+.++..|..+|++|+.++|+....      .+. .....++++ .+.++|+|+.++|..  +
T Consensus       140 ~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------~~~-~~~~~~l~e-ll~~aDvV~l~~P~t--~  209 (404)
T 1sc6_A          140 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP------LGN-ATQVQHLSD-LLNMSDVVSLHVPEN--P  209 (404)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC------CTT-CEECSCHHH-HHHHCSEEEECCCSS--T
T ss_pred             ccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc------cCC-ceecCCHHH-HHhcCCEEEEccCCC--h
Confidence            356899999999999999999999999999999999975431      111 111123333 345689999999864  2


Q ss_pred             CCCCCCCChh---cccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHHH
Q 012866          378 NTDRVPVSEE---TLRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       378 ~~~~~~i~~~---~l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                      .+. ..+..+   .++++.+++|+.-.+. ++.-+.+|-+.|...--|++.+-
T Consensus       210 ~t~-~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~  261 (404)
T 1sc6_A          210 STK-NMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFP  261 (404)
T ss_dssp             TTT-TCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC--
T ss_pred             HHH-HHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecC
Confidence            222 235443   3578888999887644 56666667676654444555443

>4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A*

Probab=97.05  E-value=0.00022  Score=68.19  Aligned_cols=39  Identities=23%  Similarity=0.169  Sum_probs=35.4

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      .+++||.+||.|++ |+|++++..|++.|++|.+.+|+.+
T Consensus         7 ~~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~   46 (261)
T 4h15_A            7 LNLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARP   46 (261)
T ss_dssp             CCCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cCCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCch
Confidence            36899999999975 9999999999999999999999754

>2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A*

Probab=97.05  E-value=0.001  Score=63.10  Aligned_cols=76  Identities=21%  Similarity=0.283  Sum_probs=55.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC--c----ccccc---cccc------CCC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA--A----RPFED---ILNF------QPE  362 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~--~----~~~~~---l~~~------~~~  362 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.++++..  .    .++.+   +..+      ...
T Consensus        12 ~~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~   91 (278)
T 2bgk_A           12 NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHG   91 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             ccccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            4578899999996 69999999999999999999999998888887776431  1    12221   1110      013


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|+|||+....
T Consensus        92 ~id~li~~Ag~~  103 (278)
T 2bgk_A           92 KLDIMFGNVGVL  103 (278)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCccc
Confidence            679999987643

>1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=97.05  E-value=0.00068  Score=64.66  Aligned_cols=46  Identities=28%  Similarity=0.418  Sum_probs=41.8

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|++++|+.++.+++++++
T Consensus         4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (278)
T 1spx_A            4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   50 (278)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56889999996 69999999999999999999999999988887776

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=97.04  E-value=0.00089  Score=64.09  Aligned_cols=76  Identities=26%  Similarity=0.347  Sum_probs=55.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC--Cc----ccccc---cccc------CCC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG--AA----RPFED---ILNF------QPE  362 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~--~~----~~~~~---l~~~------~~~  362 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++..  ..    .++.+   +..+      ...
T Consensus        25 ~~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           25 FSLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            3478899999996 6999999999999999999999999998888777632  11    12221   1110      123


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|+|||+....
T Consensus       105 ~iD~lvnnAg~~  116 (276)
T 2b4q_A          105 RLDILVNNAGTS  116 (276)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999987643

>1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A

Probab=97.04  E-value=0.00097  Score=62.27  Aligned_cols=48  Identities=27%  Similarity=0.347  Sum_probs=42.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.
T Consensus         3 ~~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (251)
T 1zk4_A            3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVG   51 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh
Confidence            367899999996 699999999999999999999999998888877664

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.04  E-value=0.0006  Score=62.56  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=49.9

Q ss_pred             ceEEEEcc-chhHHHHHHHHH-HCCCeEEEEeCCHH-HHHHHHHHhc-CCc--cccc---cccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAK-SRGARVVIFDIDFE-RAKSLASDVM-GAA--RPFE---DILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~-~~G~~v~i~nRt~~-~a~~la~~~~-~~~--~~~~---~l~~~~~~~~divInat~~  373 (454)
                      |+++|+|+ |++|++++..|. +.|++|+++.|+.+ ++++++.... ...  .++.   ++.+ ...+.|+|||+...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~d~vv~~ag~   83 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQ-AVTNAEVVFVGAME   83 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHH-HHTTCSEEEESCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHH-HHcCCCEEEEcCCC
Confidence            67999995 899999999999 89999999999998 8777652211 111  1222   2322 34578999998863

>2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus}

Probab=97.03  E-value=0.00097  Score=62.24  Aligned_cols=44  Identities=32%  Similarity=0.453  Sum_probs=39.7

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (250)
T 2cfc_A            2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETLEETARTH   46 (250)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            578999996 79999999999999999999999999988887766

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=97.03  E-value=0.001  Score=63.71  Aligned_cols=75  Identities=17%  Similarity=0.154  Sum_probs=54.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCCc----ccccc---cccc------CCC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV---MGAA----RPFED---ILNF------QPE  362 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~---~~~~----~~~~~---l~~~------~~~  362 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++   +...    .++.+   +..+      ...
T Consensus        19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            467899999996 69999999999999999999999999888877665   2221    12221   1110      124


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|+|||+....
T Consensus        99 ~iD~lv~~Ag~~  110 (277)
T 2rhc_B           99 PVDVLVNNAGRP  110 (277)
T ss_dssp             SCSEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            689999987653

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=96.09  E-value=9.8e-05  Score=67.75  Aligned_cols=91  Identities=12%  Similarity=0.059  Sum_probs=61.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ..++++.|||+|.+|++++..|.+.|.+|++++|+.+ .+.+.. .+....   +..+ ...++|+||.|+|......  
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~-~g~~~~---~~~~-~~~~aDvVilav~~~~~~~--   88 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLP-RGAEVL---CYSE-AASRSDVIVLAVHREHYDF--   88 (201)
Confidence            4567899999999999999999999999999999977 444432 222221   3333 3467899999998643221  


Q ss_pred             CCCCChhcccCCcEEEEEecC
Q 012866          381 RVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~  401 (454)
                       . +....+.++.+++|+.-.
T Consensus        89 -v-~~l~~~~~~~ivI~~~~G  107 (201)
T 2yjz_A           89 -L-AELADSLKGRVLIDVSNN  107 (201)
Confidence             1 111112356788888654

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=97.02  E-value=0.0013  Score=61.35  Aligned_cols=74  Identities=27%  Similarity=0.295  Sum_probs=54.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CCCC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QPEK  363 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~  363 (454)
                      +++|+++|.|+ ||.|++++..|++.|++|+++.|+.++.+++.+++.   ...    .++.+   +..+      ....
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   82 (247)
T 3lyl_A            3 LNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLA   82 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCC
Confidence            56899999996 699999999999999999999999999888877663   211    12221   1110      2245


Q ss_pred             ccEEEECCCCC
Q 012866          364 GAILANATPLG  374 (454)
Q Consensus       364 ~divInat~~g  374 (454)
                      .|++||+....
T Consensus        83 id~li~~Ag~~   93 (247)
T 3lyl_A           83 IDILVNNAGIT   93 (247)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            79999987653

>1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP}

Probab=97.02  E-value=0.00083  Score=62.89  Aligned_cols=72  Identities=15%  Similarity=0.022  Sum_probs=52.3

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEE-e--CCHHHHHHHHHHh-cCCcccccccccc------CCCCccEEEECC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIF-D--IDFERAKSLASDV-MGAARPFEDILNF------QPEKGAILANAT  371 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~-n--Rt~~~a~~la~~~-~~~~~~~~~l~~~------~~~~~divInat  371 (454)
                      +|+++|.|+ ||+|++++..|++.|++|+++ +  |+.++++++++++ +....+.+++..+      .....|++||+.
T Consensus         1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lv~~A   80 (244)
T 1zmo_A            1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAERQRFESENPGTIALAEQKPERLVDATLQHGEAIDTIVSND   80 (244)
T ss_dssp             -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHHHSTTEEECCCCCGGGHHHHHGGGSSCEEEEEECC
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHcCCCCEEEECC
Confidence            468999996 699999999999999999999 7  9999998888776 2211122222110      224679999988


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      ...
T Consensus        81 g~~   83 (244)
T 1zmo_A           81 YIP   83 (244)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            654

>1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2

Probab=97.02  E-value=0.00096  Score=63.61  Aligned_cols=74  Identities=23%  Similarity=0.329  Sum_probs=54.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccc---cccc------CCCCccE
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~~~---l~~~------~~~~~di  366 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++.+++.+++.. ..  .++.+   +..+      .....|+
T Consensus         6 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~   85 (270)
T 1yde_A            6 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDC   85 (270)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHcCCCCE
Confidence            467899999996 6999999999999999999999999998888776532 11  12221   1110      1135799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        86 lv~nAg~   92 (270)
T 1yde_A           86 VVNNAGH   92 (270)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998754

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=97.01  E-value=0.00098  Score=62.83  Aligned_cols=44  Identities=32%  Similarity=0.478  Sum_probs=39.6

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   46 (256)
T 1geg_A            2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI   46 (256)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            578999995 69999999999999999999999999888887665

>2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A*

Probab=97.01  E-value=0.00086  Score=62.43  Aligned_cols=47  Identities=36%  Similarity=0.552  Sum_probs=41.3

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+++
T Consensus         4 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (248)
T 2pnf_A            4 KLQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERAKAVAEEI   51 (248)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence            467899999996 69999999999999999999999999888776654

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=97.00  E-value=0.00038  Score=67.17  Aligned_cols=110  Identities=16%  Similarity=0.234  Sum_probs=66.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC-CCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH-PNTDRVP  383 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~-p~~~~~~  383 (454)
                      ++.|||+|.+|++++..|.+.|.+|++++|+.++++++.+. +...  ..++.+ .+.++|+||.|+|.... ...- ..
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~-g~~~--~~~~~~-~~~~~Dvvi~~vp~~~~~~~v~-~~   76 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDA-GEQV--VSSPAD-VAEKADRIITMLPTSINAIEAY-SG   76 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTT-TCEE--CSSHHH-HHHHCSEEEECCSSHHHHHHHH-HS
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc-CCee--cCCHHH-HHhcCCEEEEeCCCHHHHHHHH-hC
Confidence            58899999999999999999999999999999998887653 3211  122222 23457999999864210 0000 00


Q ss_pred             CC--hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCcee
Q 012866          384 VS--EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIV  419 (454)
Q Consensus       384 i~--~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~  419 (454)
                      +.  ...++++.+++|..-.+..+  .+.+...+.|..+.
T Consensus        77 ~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g~~~~  116 (296)
T 2gf2_A           77 ANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFM  116 (296)
T ss_dssp             TTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             chhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence            10  12346678888854333222  22233444565443

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.99  E-value=0.00046  Score=66.23  Aligned_cols=65  Identities=22%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeE-EEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARV-VIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v-~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ++.|||+|.+|++++..|.+. ++| .+++|+.++++++++.++. .  ..++.+ .+.++|+||-|+|..
T Consensus         4 ~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~--~~~~~~-~~~~~DvVilav~~~   69 (276)
T 2i76_A            4 VLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-K--AATLEK-HPELNGVVFVIVPDR   69 (276)
T ss_dssp             CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-C--CCSSCC-CCC---CEEECSCTT
T ss_pred             eEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-c--cCCHHH-HHhcCCEEEEeCChH
Confidence            588999999999999999877 888 5999999999999887765 2  223333 234577777777654

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=96.98  E-value=0.00082  Score=66.45  Aligned_cols=90  Identities=21%  Similarity=0.249  Sum_probs=61.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc------------cccccccccCCCCccEEEECC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA------------RPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~------------~~~~~l~~~~~~~~divInat  371 (454)
                      .++.|||+|.+|.+++..|.+.|.+|++++|+.++++++.+..+...            ....++.+ .+.++|+||.|+
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~~v   83 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-AVKDADVILIVV   83 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-HHTTCSEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHH-HHhcCCEEEEeC
Confidence            57999999999999999999999999999999999998877642100            01122222 245789999999


Q ss_pred             CCCCCCCCCCCCCC--hhcccCCcEEEEE
Q 012866          372 PLGMHPNTDRVPVS--EETLRDYQLVFDA  398 (454)
Q Consensus       372 ~~g~~p~~~~~~i~--~~~l~~~~~v~D~  398 (454)
                      |......    .+.  ...++++.+++++
T Consensus        84 ~~~~~~~----~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           84 PAIHHAS----IAANIASYISEGQLIILN  108 (359)
T ss_dssp             CGGGHHH----HHHHHGGGCCTTCEEEES
T ss_pred             CchHHHH----HHHHHHHhCCCCCEEEEc
Confidence            8643210    011  1124566777776

>2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.97  E-value=0.00095  Score=62.97  Aligned_cols=73  Identities=30%  Similarity=0.448  Sum_probs=52.2

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccEEE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~divI  368 (454)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++ +++++++....  .++.+   +...      .....|+||
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~iD~lv   82 (256)
T 2d1y_A            4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   82 (256)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-HHHHHHhhCCEEEeeCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            56899999996 699999999999999999999999888 77766653111  12221   1110      113579999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      |+....
T Consensus        83 ~~Ag~~   88 (256)
T 2d1y_A           83 NNAAIA   88 (256)
T ss_dssp             ECCCCC
T ss_pred             ECCCCC
Confidence            987653

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.97  E-value=0.00047  Score=68.25  Aligned_cols=111  Identities=15%  Similarity=0.186  Sum_probs=73.3

Q ss_pred             ceEEEEccchhHHHHHHHHH-HC-CCeE-EEEeCCHHHHHHHHHHhcC--C-ccccccccccCCCCccEEEECCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAK-SR-GARV-VIFDIDFERAKSLASDVMG--A-ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~-~~-G~~v-~i~nRt~~~a~~la~~~~~--~-~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      -++.|||+|.+|+..+.+|. .. +++| .|++|+.+++++++++++.  . ..+++++-+  -.+.|+|+.|||.....
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~   80 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLA--DENVDAVLVTSWGPAHE   80 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHH--CTTCCEEEECSCGGGHH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhc--CCCCCEEEECCCchhHH
Confidence            37999999999999999998 53 5664 5999999999999999973  2 123444322  24589999999864321


Q ss_pred             CCCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCce-eccHH
Q 012866          378 NTDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAII-VSGVE  423 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~-~~Gl~  423 (454)
                           .+-...+..+.-|+  +=+|.-      -.+.+.|+++|..+ .-|..
T Consensus        81 -----~~~~~al~~Gk~vl--~EKP~a~~~~e~~~l~~~a~~~g~~~~~v~~~  126 (344)
T 3mz0_A           81 -----SSVLKAIKAQKYVF--CEKPLATTAEGCMRIVEEEIKVGKRLVQVGFM  126 (344)
T ss_dssp             -----HHHHHHHHTTCEEE--ECSCSCSSHHHHHHHHHHHHHHSSCCEEECCG
T ss_pred             -----HHHHHHHHCCCcEE--EcCCCCCCHHHHHHHHHHHHHHCCEEEEEecc
Confidence                 12234455554332  234532      24667778888766 44444

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=96.97  E-value=0.00088  Score=66.89  Aligned_cols=70  Identities=17%  Similarity=0.253  Sum_probs=52.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCc---------cc-cccccccCCCCccEEEECC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAA---------RP-FEDILNFQPEKGAILANAT  371 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~~~---------~~-~~~l~~~~~~~~divInat  371 (454)
                      ..++.|||+|.+|.+++..|++.|.+|++++|++++++++.+.-. ..+         +. ..++.+ .+.++|+||-|+
T Consensus        29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~e-a~~~aDvVilaV  107 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKA-SLEGVTDILIVV  107 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHH-HHTTCCEEEECC
T ss_pred             CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHH-HHhcCCEEEECC
Confidence            358999999999999999999999999999999999998876521 111         00 122322 345689999888


Q ss_pred             CC
Q 012866          372 PL  373 (454)
Q Consensus       372 ~~  373 (454)
                      |.
T Consensus       108 p~  109 (356)
T 3k96_A          108 PS  109 (356)
T ss_dssp             CH
T ss_pred             CH
Confidence            75

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=96.95  E-value=0.0018  Score=60.90  Aligned_cols=48  Identities=29%  Similarity=0.499  Sum_probs=43.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         8 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   56 (252)
T 3f1l_A            8 DLLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKLRQVASHI   56 (252)
T ss_dssp             TTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999996 69999999999999999999999999988887665

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.95  E-value=0.0031  Score=65.64  Aligned_cols=95  Identities=17%  Similarity=0.190  Sum_probs=60.5

Q ss_pred             CCceEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          302 AGRMFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFER-AKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       302 ~~k~vlViGaGG~ara-i~~~L~~~G~~v~i~nRt~~~-a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      ..|++.|||.||+|.+ +|..|.++|++|+++++.... .+.|. ..+.... ...-.+ .+.++|+||-+.  |     
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~-~~gi~~~-~g~~~~-~~~~~d~vV~Sp--g-----   90 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLT-ALGAQIY-FHHRPE-NVLDASVVVVST--A-----   90 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHH-HTTCEEE-SSCCGG-GGTTCSEEEECT--T-----
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHH-HCCCEEE-CCCCHH-HcCCCCEEEECC--C-----
Confidence            3589999999999996 789999999999999976433 22232 2222110 000000 112344444211  1     


Q ss_pred             CCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHH
Q 012866          380 DRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLR  427 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~  427 (454)
                                           -|...|.+++|+++|++++.-.++|-+
T Consensus        91 ---------------------i~~~~p~~~~a~~~gi~v~~~~e~l~~  117 (494)
T 4hv4_A           91 ---------------------ISADNPEIVAAREARIPVIRRAEMLAE  117 (494)
T ss_dssp             ---------------------SCTTCHHHHHHHHTTCCEEEHHHHHHH
T ss_pred             ---------------------CCCCCHHHHHHHHCCCCEEcHHHHHHH
Confidence                                 134678899999999999999998854

>1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A*

Probab=96.94  E-value=0.00089  Score=63.01  Aligned_cols=46  Identities=26%  Similarity=0.478  Sum_probs=40.5

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||.|++++..|.+.|++|+++.| +.++++++.+++
T Consensus         5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~l   52 (261)
T 1gee_A            5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEI   52 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH
Confidence            56899999995 79999999999999999999999 888887776665

>1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A*

Probab=96.94  E-value=0.0023  Score=60.84  Aligned_cols=47  Identities=21%  Similarity=0.280  Sum_probs=39.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++| +.++++++++++
T Consensus         8 ~~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   56 (276)
T 1mxh_A            8 ASECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAEL   56 (276)
T ss_dssp             ---CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH
Confidence            356899999996 69999999999999999999999 988888887665

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=96.93  E-value=0.00055  Score=66.78  Aligned_cols=110  Identities=11%  Similarity=0.035  Sum_probs=68.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC-
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV-  382 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~-  382 (454)
                      .++.|||+|.+|++++..|.+.|.+|++++|+.++++++.+ .+...  ..+..+ .+.++|+||.|+|....  .... 
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~-~g~~~--~~~~~~-~~~~~DvVi~av~~~~~--~~~v~  104 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ-EGARL--GRTPAE-VVSTCDITFACVSDPKA--AKDLV  104 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHH-TTCEE--CSCHHH-HHHHCSEEEECCSSHHH--HHHHH
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH-cCCEE--cCCHHH-HHhcCCEEEEeCCCHHH--HHHHH
Confidence            67999999999999999999999999999999999888765 23221  112222 23468999999983110  0000 


Q ss_pred             -CCC--hhcccCCcEEEEEecCCCC-C-HHHHHHHHCCCcee
Q 012866          383 -PVS--EETLRDYQLVFDAVYTPRK-T-RLLKDAEAAGAIIV  419 (454)
Q Consensus       383 -~i~--~~~l~~~~~v~D~~y~P~~-T-~ll~~A~~~G~~~~  419 (454)
                       .+.  ...+.++.+++|+.-.... + .+.+...+.|..++
T Consensus       105 ~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~~~v  146 (316)
T 2uyy_A          105 LGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFL  146 (316)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             cCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence             000  1345667888888643221 1 23333444565544

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.93  E-value=0.02  Score=58.12  Aligned_cols=130  Identities=18%  Similarity=0.166  Sum_probs=81.7

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHH
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAKS  341 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nR----------t~~~a~~  341 (454)
                      -+.|.+.++++.+.+.         +.++++++|+|.|.|.+|+.++..|.++|++|+ |.+.          +.+...+
T Consensus       189 Tg~Gv~~~~~~~~~~~---------g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~  259 (421)
T 1v9l_A          189 TGFGVAVATREMAKKL---------WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQK  259 (421)
T ss_dssp             HHHHHHHHHHHHHHHH---------HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHH
T ss_pred             hHHHHHHHHHHHHHhc---------CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHH
Confidence            3567777777666532         257889999999999999999999999999765 7777          5666665


Q ss_pred             HHHHhcC------------Ccc-ccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHH-
Q 012866          342 LASDVMG------------AAR-PFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL-  407 (454)
Q Consensus       342 la~~~~~------------~~~-~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~l-  407 (454)
                      +.++.+.            ..+ +-+++-   ...+||++.|.--+....   .  ....+ ...+|.+-.-.|- |+- 
T Consensus       260 ~k~~~g~~~v~~y~~~~~~~~~~~~~~~~---~~~~Dil~P~A~~~~I~~---~--~a~~l-~ak~V~EgAN~p~-t~~a  329 (421)
T 1v9l_A          260 NKGLTGPALVELFTTKDNAEFVKNPDAIF---KLDVDIFVPAAIENVIRG---D--NAGLV-KARLVVEGANGPT-TPEA  329 (421)
T ss_dssp             TTTSCHHHHHHHHHHTSCCCCCSSTTGGG---GCCCSEEEECSCSSCBCT---T--TTTTC-CCSEEECCSSSCB-CHHH
T ss_pred             HHHhhCCccccccccccCceEeCCchhhh---cCCccEEEecCcCCccch---h--hHHHc-CceEEEecCCCcC-CHHH
Confidence            5433221            222 222321   246899998874332211   1  11123 4578888887775 533 


Q ss_pred             HHHHHHCCCceecc
Q 012866          408 LKDAEAAGAIIVSG  421 (454)
Q Consensus       408 l~~A~~~G~~~~~G  421 (454)
                      -+.-+++|+.++++
T Consensus       330 ~~~l~~~Gi~~~PD  343 (421)
T 1v9l_A          330 ERILYERGVVVVPD  343 (421)
T ss_dssp             HHHHHTTTCEEECH
T ss_pred             HHHHHHCCCEEeCh
Confidence            23334578877744

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.92  E-value=0.00083  Score=65.49  Aligned_cols=101  Identities=17%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GARVV-IFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~v~-i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      -++.|||+|.+|+..+.+|.+. +++|+ +++|+++++++    ++.....++++.+ . .+.|+||.|||.....    
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~----~g~~~~~~~~l~~-~-~~~DvViiatp~~~h~----   79 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF----ELQPFRVVSDIEQ-L-ESVDVALVCSPSREVE----   79 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-----------CCTTSCEESSGGG-S-SSCCEEEECSCHHHHH----
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH----cCCCcCCHHHHHh-C-CCCCEEEECCCchhhH----
Confidence            5899999999999999999875 45766 89999988765    4443333555544 2 6789999999865431    


Q ss_pred             CCCChhcccCCcEEEEEecCCC-C------CHHHHHHHHCCCc
Q 012866          382 VPVSEETLRDYQLVFDAVYTPR-K------TRLLKDAEAAGAI  417 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~y~P~-~------T~ll~~A~~~G~~  417 (454)
                       +.-...++.+.-|+|-  +|. .      ..+.+.|++.|..
T Consensus        80 -~~~~~al~aG~~Vi~e--kP~~a~~~~~~~~l~~~a~~~g~~  119 (304)
T 3bio_A           80 -RTALEILKKGICTADS--FDIHDGILALRRSLGDAAGKSGAA  119 (304)
T ss_dssp             -HHHHHHHTTTCEEEEC--CCCGGGHHHHHHHHHHHHHHHTCE
T ss_pred             -HHHHHHHHcCCeEEEC--CCCCCCCHHHHHHHHHHHHhCCCE
Confidence             1223456677777764  564 2      3566777777754

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.92  E-value=0.0005  Score=68.60  Aligned_cols=41  Identities=22%  Similarity=0.350  Sum_probs=38.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      ++.|||+|.+|.+++..|.+.|.+|++++|+.++++.+.+.
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~   57 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEK   57 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHc
Confidence            79999999999999999999999999999999999888765

>3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A*

Probab=96.91  E-value=0.0023  Score=60.11  Aligned_cols=71  Identities=20%  Similarity=0.239  Sum_probs=52.4

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEEEE
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAILAN  369 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~divIn  369 (454)
                      |+++|.|+ ||+|++++..|++.|++|++++|+.+++++++++++...    .++.+   +..+      .....|++||
T Consensus         1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~lvn   80 (248)
T 3asu_A            1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLASLPAEWCNIDILVN   80 (248)
T ss_dssp             CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHTSCTTTCCCCEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHhCCCCCEEEE
Confidence            46899986 699999999999999999999999999998888775321    12221   1110      1246899999


Q ss_pred             CCCCC
Q 012866          370 ATPLG  374 (454)
Q Consensus       370 at~~g  374 (454)
                      +....
T Consensus        81 nAg~~   85 (248)
T 3asu_A           81 NAGLA   85 (248)
T ss_dssp             CCCCC
T ss_pred             CCCcC
Confidence            87653

>1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A*

Probab=96.89  E-value=0.0013  Score=63.48  Aligned_cols=47  Identities=21%  Similarity=0.288  Sum_probs=40.8

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~n-Rt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|+++. |+.++++++++++
T Consensus         6 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~~~~~~~l   54 (291)
T 1e7w_A            6 APTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL   54 (291)
T ss_dssp             --CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHH
Confidence            367899999996 6999999999999999999999 9999888887765

>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}

Probab=96.88  E-value=0.0011  Score=62.99  Aligned_cols=76  Identities=18%  Similarity=0.150  Sum_probs=51.4

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---cccc------CCCCccE
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~------~~~~~di  366 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|+++.|+.+++.+.....+...  .++.+   +.++      .....|+
T Consensus        23 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD~  102 (260)
T 3gem_A           23 MTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHASVTELRQAGAVALYGDFSCETGIMAFIDLLKTQTSSLRA  102 (260)
T ss_dssp             ----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHTCEEEECCTTSHHHHHHHHHHHHHHCSCCSE
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcCCeEEECCCCCHHHHHHHHHHHHHhcCCCCE
Confidence            4577899999996 699999999999999999999999887655555544322  12221   1110      1246799


Q ss_pred             EEECCCCC
Q 012866          367 LANATPLG  374 (454)
Q Consensus       367 vInat~~g  374 (454)
                      +||+....
T Consensus       103 lv~nAg~~  110 (260)
T 3gem_A          103 VVHNASEW  110 (260)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99987643

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=96.88  E-value=0.0013  Score=60.31  Aligned_cols=40  Identities=18%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      +..+...++.|||+|.+|.+++..|.+.|.+|++++|+.+
T Consensus        14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            3456788999999999999999999999999999999865

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.88  E-value=0.0015  Score=62.41  Aligned_cols=48  Identities=33%  Similarity=0.448  Sum_probs=41.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-------------CHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-------------DFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-------------t~~~a~~la~~~~  347 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|             +.++.+++++.+.
T Consensus        12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (280)
T 3pgx_A           12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARLVE   73 (280)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHHHH
Confidence            578999999996 69999999999999999999998             7788888776653

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.87  E-value=0.0022  Score=62.79  Aligned_cols=72  Identities=11%  Similarity=0.060  Sum_probs=50.3

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----------c-ccccccccCCCCccEE
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----------R-PFEDILNFQPEKGAIL  367 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----------~-~~~~l~~~~~~~~div  367 (454)
                      ......++.|||+|.+|.+++..|++.|.+|+++ |+.++++++.+. +...          + ...+.++  ...+|+|
T Consensus        15 ~~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~--~~~~D~v   90 (318)
T 3hwr_A           15 LYFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEAT-GLRLETQSFDEQVKVSASSDPSA--VQGADLV   90 (318)
T ss_dssp             -----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHH-CEEEECSSCEEEECCEEESCGGG--GTTCSEE
T ss_pred             hhccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhC-CeEEEcCCCcEEEeeeeeCCHHH--cCCCCEE
Confidence            3445679999999999999999999999999999 999998888754 1100          0 0112222  3568999


Q ss_pred             EECCCCC
Q 012866          368 ANATPLG  374 (454)
Q Consensus       368 Inat~~g  374 (454)
                      |-|++..
T Consensus        91 ilavk~~   97 (318)
T 3hwr_A           91 LFCVKST   97 (318)
T ss_dssp             EECCCGG
T ss_pred             EEEcccc
Confidence            9988753

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.87  E-value=0.00091  Score=66.12  Aligned_cols=112  Identities=15%  Similarity=0.196  Sum_probs=75.3

Q ss_pred             eEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSR-GARV-VIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~-G~~v-~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ++.|||+|.+|+..+.+|.+. +++| .|++|+.++++++++.++..  ..+++++-+  ..+.|+|+.|||.....   
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~---   78 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIE--DPNVDAVLVCSSTNTHS---   78 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHH--CTTCCEEEECSCGGGHH---
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhc--CCCCCEEEEcCCCcchH---
Confidence            789999999999999998876 5565 58999999999999998753  234444322  24689999999864321   


Q ss_pred             CCCCChhcccCCcEEEEEecCCC------CCHHHHHHHHCCCceeccHHHH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPR------KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~------~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                        ++....+..+.-|+  +=+|.      --.+.+.|+++|..+.-|..+.
T Consensus        79 --~~~~~al~~gk~v~--~EKP~~~~~~e~~~l~~~a~~~g~~~~v~~~~R  125 (344)
T 3ezy_A           79 --ELVIACAKAKKHVF--CEKPLSLNLADVDRMIEETKKADVILFTGFNRR  125 (344)
T ss_dssp             --HHHHHHHHTTCEEE--EESCSCSCHHHHHHHHHHHHHHTCCEEEECGGG
T ss_pred             --HHHHHHHhcCCeEE--EECCCCCCHHHHHHHHHHHHHhCCcEEEeeccc
Confidence              12233455554333  22443      1346677788888776665543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.86  E-value=0.0017  Score=66.97  Aligned_cols=100  Identities=19%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----------------ccc-ccccccCCCCccE
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----------------RPF-EDILNFQPEKGAI  366 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----------------~~~-~~l~~~~~~~~di  366 (454)
                      .++.|||+|-+|.+++..|++.|.+|++++|++++++.+.+......                +.+ .++.+ .+.++|+
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~e-a~~~aDv   81 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQ-AVPEADI   81 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHH-HGGGCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHH-HHhcCCE
Confidence            47999999999999999999999999999999999998876321100                000 12222 2457899


Q ss_pred             EEECCCCCCCCCCCCC--CCC---h---hcccCCcEEEEEecCCCC
Q 012866          367 LANATPLGMHPNTDRV--PVS---E---ETLRDYQLVFDAVYTPRK  404 (454)
Q Consensus       367 vInat~~g~~p~~~~~--~i~---~---~~l~~~~~v~D~~y~P~~  404 (454)
                      ||-|+|....++....  .+.   .   ..++++.+|++.+-.|..
T Consensus        82 ViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pg  127 (450)
T 3gg2_A           82 IFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTVPVG  127 (450)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTT
T ss_pred             EEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCc
Confidence            9999876432211100  010   0   125677888888765544

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.86  E-value=0.00082  Score=71.08  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=34.1

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  336 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~  336 (454)
                      .+++++|+|+|+||.|..++..|+..|+ +|+|++++.
T Consensus       323 kL~~arVLIVGaGGLGs~vA~~La~aGVG~ItLvD~D~  360 (615)
T 4gsl_A          323 IIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGT  360 (615)
T ss_dssp             HHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence            3578999999999999999999999999 999999864

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=96.86  E-value=0.00055  Score=70.45  Aligned_cols=73  Identities=15%  Similarity=0.045  Sum_probs=56.4

Q ss_pred             CCC-ceEEEEccchhHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhcCCcc--ccccccccCCCCccEEEECC
Q 012866          301 LAG-RMFVLAGAGGAGRALAFGAKSR------GARVVIFDIDFERAKSLASDVMGAAR--PFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       301 ~~~-k~vlViGaGG~arai~~~L~~~------G~~v~i~nRt~~~a~~la~~~~~~~~--~~~~l~~~~~~~~divInat  371 (454)
                      ++| +++.|||.|-+|.+++..|.+.      |.+|++.+|+.+++.+.+...|....  ...++.+ .++++|+||.++
T Consensus        51 L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aE-Aa~~ADVVILaV  129 (525)
T 3fr7_A           51 FKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWE-TVSGSDLVLLLI  129 (525)
T ss_dssp             TTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHH-HHHHCSEEEECS
T ss_pred             hcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHH-HHhcCCEEEECC
Confidence            568 9999999999999999999998      88999999987777777777765431  1123333 345689999999


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      |..
T Consensus       130 P~~  132 (525)
T 3fr7_A          130 SDA  132 (525)
T ss_dssp             CHH
T ss_pred             ChH
Confidence            864

>2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ...

Probab=96.85  E-value=0.00084  Score=64.52  Aligned_cols=48  Identities=38%  Similarity=0.426  Sum_probs=40.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|+++.|+. ++++++++++
T Consensus        19 ~~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~~l   68 (288)
T 2x9g_A           19 SHMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEAAVSLADEL   68 (288)
T ss_dssp             ---CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHH
Confidence            4577899999996 6999999999999999999999998 8888777665

>3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti}

Probab=96.85  E-value=0.0024  Score=61.21  Aligned_cols=75  Identities=20%  Similarity=0.343  Sum_probs=54.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHhcC----Cc----ccccc---cccc------C
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDVMG----AA----RPFED---ILNF------Q  360 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~~~----~~----~~~~~---l~~~------~  360 (454)
                      ++.+|++||.|+ ||+|++++..|++.|++|++++| +.++++++++++..    ..    .++.+   +..+      .
T Consensus        22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  101 (281)
T 3v2h_A           22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDEIRTVTDEVAGLSSGTVLHHPADMTKPSEIADMMAMVADR  101 (281)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHHHHHHTTCSSCEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHhhccCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            577899999996 69999999999999999999999 67777877776632    11    12221   1110      1


Q ss_pred             CCCccEEEECCCCC
Q 012866          361 PEKGAILANATPLG  374 (454)
Q Consensus       361 ~~~~divInat~~g  374 (454)
                      ....|++||+....
T Consensus       102 ~g~iD~lv~nAg~~  115 (281)
T 3v2h_A          102 FGGADILVNNAGVQ  115 (281)
T ss_dssp             TSSCSEEEECCCCC
T ss_pred             CCCCCEEEECCCCC
Confidence            24689999987653

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.85  E-value=0.00076  Score=67.74  Aligned_cols=112  Identities=13%  Similarity=0.069  Sum_probs=74.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSR--GAR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~--G~~-v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      ..+|.|+|+| .|+.-+.++.+.  +++ +-|++|+.++++++|++++...  +.++++ .+.+.|+++-+||.......
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~--~~~~~~-l~~~~D~v~i~~p~~~h~~~   82 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPL--YTSPEQ-ITGMPDIACIVVRSTVAGGA   82 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCE--ESSGGG-CCSCCSEEEECCC--CTTSH
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCE--ECCHHH-HhcCCCEEEEECCCcccchh
Confidence            5689999998 788766777665  465 4599999999999999998753  334444 34568999999986553210


Q ss_pred             CCCCCChhcccCCc-EEEEEecCCC----CCHHHHHHHHCCCceeccH
Q 012866          380 DRVPVSEETLRDYQ-LVFDAVYTPR----KTRLLKDAEAAGAIIVSGV  422 (454)
Q Consensus       380 ~~~~i~~~~l~~~~-~v~D~~y~P~----~T~ll~~A~~~G~~~~~Gl  422 (454)
                      . ..+....|..+. ++++   +|.    -..+++.|+++|+.+.-|.
T Consensus        83 ~-~~~a~~al~aGkhVl~E---KPl~~~ea~~l~~~A~~~g~~~~v~~  126 (372)
T 4gmf_A           83 G-TQLARHFLARGVHVIQE---HPLHPDDISSLQTLAQEQGCCYWINT  126 (372)
T ss_dssp             H-HHHHHHHHHTTCEEEEE---SCCCHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             H-HHHHHHHHHcCCcEEEe---cCCCHHHHHHHHHHHHHcCCEEEEcC
Confidence            0 123334455443 3333   453    2478888899999876554

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=96.85  E-value=0.0011  Score=62.76  Aligned_cols=64  Identities=19%  Similarity=0.096  Sum_probs=48.7

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeC--CHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDI--DFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nR--t~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ++.|||+|.+|.+++..|.+.|++|++++|  +.++++++.+. +..    .+..+ ...++|+||.|+|..
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~-g~~----~~~~~-~~~~aDvvi~~v~~~   67 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV-GVT----ETSEE-DVYSCPVVISAVTPG   67 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH-TCE----ECCHH-HHHTSSEEEECSCGG
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHC-CCc----CCHHH-HHhcCCEEEEECCCH
Confidence            588999999999999999999999999999  77777777653 322    22222 234689999888753

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=96.84  E-value=0.00053  Score=67.53  Aligned_cols=111  Identities=15%  Similarity=0.173  Sum_probs=74.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GARVV-IFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~v~-i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .++.|||+|.+|+..+.+|.+. +++|+ |++|+.+++++++++++..  ..+++++-+  -.+.|+|+.|||.....  
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~--   81 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCK--DETIDIIYIPTYNQGHY--   81 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHH--CTTCSEEEECCCGGGHH--
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhc--CCCCCEEEEcCCCHHHH--
Confidence            5899999999999999999986 55654 8999999999999998763  234444322  24689999999865321  


Q ss_pred             CCCCCChhcccCC-cEEEEEecCCCC------CHHHHHHHHCCCceeccHHH
Q 012866          380 DRVPVSEETLRDY-QLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       380 ~~~~i~~~~l~~~-~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~m  424 (454)
                         .+-...+..+ .++++   +|.-      -.+.+.|+++|..+.-|...
T Consensus        82 ---~~~~~al~~gk~vl~E---KP~~~~~~e~~~l~~~a~~~g~~~~v~~~~  127 (330)
T 3e9m_A           82 ---SAAKLALSQGKPVLLE---KPFTLNAAEAEELFAIAQEQGVFLMEAQKS  127 (330)
T ss_dssp             ---HHHHHHHHTTCCEEEC---SSCCSSHHHHHHHHHHHHHTTCCEEECCSG
T ss_pred             ---HHHHHHHHCCCeEEEe---CCCCCCHHHHHHHHHHHHHcCCeEEEEEhh
Confidence               1222344444 34333   4431      24566777788776655543

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=96.84  E-value=0.0024  Score=61.12  Aligned_cols=75  Identities=25%  Similarity=0.325  Sum_probs=54.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC----------------HHHHHHHHHHhcC---Cc----ccccc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID----------------FERAKSLASDVMG---AA----RPFED  355 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt----------------~~~a~~la~~~~~---~~----~~~~~  355 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+                .++++++++.+..   ..    .++.+
T Consensus         8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~   87 (286)
T 3uve_A            8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHNRRIVTAEVDVRD   87 (286)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTTCCEEEEECCTTC
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHhhcCCceEEEEcCCCC
Confidence            478999999996 599999999999999999999887                7777777766532   11    12221


Q ss_pred             ---cccc------CCCCccEEEECCCCC
Q 012866          356 ---ILNF------QPEKGAILANATPLG  374 (454)
Q Consensus       356 ---l~~~------~~~~~divInat~~g  374 (454)
                         +..+      .....|++||+....
T Consensus        88 ~~~v~~~~~~~~~~~g~id~lv~nAg~~  115 (286)
T 3uve_A           88 YDALKAAVDSGVEQLGRLDIIVANAGIG  115 (286)
T ss_dssp             HHHHHHHHHHHHHHHSCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHHHHhCCCCEEEECCccc
Confidence               1110      123679999988654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.84  E-value=0.0016  Score=62.02  Aligned_cols=67  Identities=15%  Similarity=0.115  Sum_probs=51.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccccccccCCCCccEEEECCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~l~~~~~~~~divInat~~  373 (454)
                      .++++|+|||..|++++..|.+.|.+|+++.|+.+++..+... +...  .++.++.   ..++|+||++.+.
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~~D~~d~~---~~~~d~vi~~a~~   73 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRAS-GAEPLLWPGEEPS---LDGVTHLLISTAP   73 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHT-TEEEEESSSSCCC---CTTCCEEEECCCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhC-CCeEEEecccccc---cCCCCEEEECCCc
Confidence            3689999999999999999999999999999999887766532 2211  2333433   4678999998764

>3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A*

Probab=96.84  E-value=0.00086  Score=62.76  Aligned_cols=46  Identities=22%  Similarity=0.263  Sum_probs=40.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||.|++++..|.+.|++|++++|+ .++.+++.+++
T Consensus         5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~   52 (258)
T 3afn_B            5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPANIDETIASM   52 (258)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhhHHHHHHHH
Confidence            56899999996 799999999999999999999999 78777776655

>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*

Probab=96.83  E-value=0.0024  Score=63.05  Aligned_cols=75  Identities=16%  Similarity=0.259  Sum_probs=57.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHC-CC-eEEEEeCCHHHHHHHHHHhcCCc-----ccccc---ccccCCCCccEE
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSR-GA-RVVIFDIDFERAKSLASDVMGAA-----RPFED---ILNFQPEKGAIL  367 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~-G~-~v~i~nRt~~~a~~la~~~~~~~-----~~~~~---l~~~~~~~~div  367 (454)
                      ..+++++|||.|+ |+.|++++..|.+. |+ +|++++|+.++.+.+.+.+....     .++.+   +.. ...+.|+|
T Consensus        17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~~~~~~~~~~~v~~~~~Dl~d~~~l~~-~~~~~D~V   95 (344)
T 2gn4_A           17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQSEMAMEFNDPRMRFFIGDVRDLERLNY-ALEGVDIC   95 (344)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHHHHHHHHCCTTEEEEECCTTCHHHHHH-HTTTCSEE
T ss_pred             HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHHHHHHHhcCCCEEEEECCCCCHHHHHH-HHhcCCEE
Confidence            3467899999995 89999999999999 98 99999999999888877764211     12222   223 34578999


Q ss_pred             EECCCCC
Q 012866          368 ANATPLG  374 (454)
Q Consensus       368 Inat~~g  374 (454)
                      |++....
T Consensus        96 ih~Aa~~  102 (344)
T 2gn4_A           96 IHAAALK  102 (344)
T ss_dssp             EECCCCC
T ss_pred             EECCCCC
Confidence            9988653

>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}

Probab=96.83  E-value=0.0015  Score=60.48  Aligned_cols=73  Identities=23%  Similarity=0.277  Sum_probs=52.7

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccc---cccc------CCCCccEEE
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~~~---l~~~------~~~~~divI  368 (454)
                      .+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.++++. ..  .++.+   +.+.      .....|+||
T Consensus         4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id~li   83 (234)
T 2ehd_A            4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRLQALAAELEGALPLPGDVREEGDWARAVAAMEEAFGELSALV   83 (234)
T ss_dssp             CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhhceEEEecCCCHHHHHHHHHHHHHHcCCCCEEE
Confidence            3678999985 6999999999999999999999999998888776531 11  12221   1110      113579999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      |+...+
T Consensus        84 ~~Ag~~   89 (234)
T 2ehd_A           84 NNAGVG   89 (234)
T ss_dssp             ECCCCC
T ss_pred             ECCCcC
Confidence            987654

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.83  E-value=0.001  Score=66.24  Aligned_cols=111  Identities=14%  Similarity=0.167  Sum_probs=71.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCC--cccccccccc-CCCCccEEEECCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GAR-VVIFDIDFERAKSLASDVMGA--ARPFEDILNF-QPEKGAILANATPLGMHPN  378 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~-v~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~-~~~~~divInat~~g~~p~  378 (454)
                      -++.|||+|.+|+..+.+|.+. +++ +.|++|+.+++++++++++..  ...+.++++. .-.+.|+|+.|||..... 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-   85 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-   85 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence            4799999999999999999886 455 579999999999999998741  1122233221 113689999999865421 


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceecc
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSG  421 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~G  421 (454)
                          ++....+..+.-|+  +=+|.-      -.+.+.|++.|..+..|
T Consensus        86 ----~~~~~al~aGk~V~--~EKP~a~~~~e~~~l~~~a~~~g~~~~~~  128 (362)
T 1ydw_A           86 ----EWAIKAAEKGKHIL--LEKPVAMNVTEFDKIVDACEANGVQIMDG  128 (362)
T ss_dssp             ----HHHHHHHTTTCEEE--ECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred             ----HHHHHHHHCCCeEE--EecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence                12234455554333  234532      24556677777765544

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=96.82  E-value=0.0019  Score=61.59  Aligned_cols=76  Identities=22%  Similarity=0.308  Sum_probs=53.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh---cCCc----ccccc---
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID------------FERAKSLASDV---MGAA----RPFED---  355 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt------------~~~a~~la~~~---~~~~----~~~~~---  355 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|++++|+            .++.+++++.+   +...    .++.+   
T Consensus         9 ~~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~   88 (278)
T 3sx2_A            9 GPLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGSRIVARQADVRDRES   88 (278)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTCCEEEEECCTTCHHH
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcCCeEEEEeCCCCCHHH
Confidence            4578999999996 699999999999999999999987            67766665544   2221    12221   


Q ss_pred             cccc------CCCCccEEEECCCCC
Q 012866          356 ILNF------QPEKGAILANATPLG  374 (454)
Q Consensus       356 l~~~------~~~~~divInat~~g  374 (454)
                      +..+      .....|++||+....
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence            1110      113679999988653

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.82  E-value=0.0015  Score=64.68  Aligned_cols=111  Identities=14%  Similarity=0.167  Sum_probs=74.6

Q ss_pred             eEEEEccchhHHH-HHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRA-LAFGAKSR-GARV-VIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       305 ~vlViGaGG~ara-i~~~L~~~-G~~v-~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      |+.|||+|.+|+. .+.++... +++| .|++|+++++++++++++..  +.+++++-+  -.+.|+|+.|||.....  
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~--~~~iDaV~I~tP~~~H~--  100 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLA--SDVIDAVYIPLPTSQHI--  100 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHH--CSSCSEEEECSCGGGHH--
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhc--CCCCCEEEEeCCCchhH--
Confidence            7999999999975 56777776 5565 59999999999999999864  234555422  25689999999975432  


Q ss_pred             CCCCCChhcccCCcEEEEEecCCC------CCHHHHHHHHCCCceeccHHH
Q 012866          380 DRVPVSEETLRDYQLVFDAVYTPR------KTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~~y~P~------~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                         ++....+..+.-|+  +=+|.      --.+++.|++.|..+.-|..+
T Consensus       101 ---~~~~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~  146 (350)
T 4had_A          101 ---EWSIKAADAGKHVV--CEKPLALKAGDIDAVIAARDRNKVVVTEAYMI  146 (350)
T ss_dssp             ---HHHHHHHHTTCEEE--ECSCCCSSGGGGHHHHHHHHHHTCCEEECCGG
T ss_pred             ---HHHHHHHhcCCEEE--EeCCcccchhhHHHHHHHHHHcCCceeEeeee
Confidence               12334455443332  22343      245677788888877666553

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=96.82  E-value=0.0023  Score=59.98  Aligned_cols=48  Identities=31%  Similarity=0.511  Sum_probs=43.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~   53 (253)
T 3qiv_A            5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQI   53 (253)
T ss_dssp             CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            4578999999996 69999999999999999999999999999888776

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=96.82  E-value=0.0017  Score=61.43  Aligned_cols=48  Identities=31%  Similarity=0.392  Sum_probs=43.9

Q ss_pred             CCCCCceEEEEcc-c-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-G-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-G-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ | |.|++++..|++.|++|++++|+.++.+++.+++
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l   67 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRLGETRDQL   67 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH
Confidence            3478999999998 7 8999999999999999999999999988888776

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=96.82  E-value=0.0018  Score=63.96  Aligned_cols=70  Identities=21%  Similarity=0.196  Sum_probs=53.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GARVV-IFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~v~-i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      .++.|||+|.+|+..+.+|.+. +++|+ +++|+.+++++++++++... .+++++-+  -.+.|+|+.|||...
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~--~~~~D~V~i~tp~~~   77 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFA--RDDIDGIVIGSPTST   77 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTT--CSCCCEEEECSCGGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhc--CCCCCEEEEeCCchh
Confidence            4799999999999999999987 56654 99999999999999987432 23333211  136899999998653

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.82  E-value=0.0026  Score=62.33  Aligned_cols=71  Identities=24%  Similarity=0.315  Sum_probs=53.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC-------CccccccccccCCCCccEEEECCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMG-------AARPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~-------~~~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ++.|||+|.+|.+++..|+..|.  +|++++|+.++++.++..+..       ..+...+.+  .+.++|+||.|++.+.
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d~~--~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYA--DLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGG--GGTTCSEEEECCCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCCHH--HhCCCCEEEEccCCCC
Confidence            68999999999999999999997  899999999988887654421       011112222  3567999999998765


Q ss_pred             CC
Q 012866          376 HP  377 (454)
Q Consensus       376 ~p  377 (454)
                      .|
T Consensus        80 ~~   81 (319)
T 1a5z_A           80 KP   81 (319)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=96.81  E-value=0.0024  Score=60.52  Aligned_cols=48  Identities=27%  Similarity=0.248  Sum_probs=43.1

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|.+||.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   52 (265)
T 3lf2_A            4 YDLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERLRAAESAL   52 (265)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578999999996 69999999999999999999999999988887765

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=96.80  E-value=0.0017  Score=61.21  Aligned_cols=74  Identities=12%  Similarity=0.065  Sum_probs=54.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CCC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QPE  362 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  362 (454)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++..   ..    .++.+   +..+      . .
T Consensus         4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~-g   82 (252)
T 3h7a_A            4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAH-A   82 (252)
T ss_dssp             -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHH-S
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhh-C
Confidence            367899999996 5999999999999999999999999999888877632   11    12221   1110      1 3


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|++||+....
T Consensus        83 ~id~lv~nAg~~   94 (252)
T 3h7a_A           83 PLEVTIFNVGAN   94 (252)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CceEEEECCCcC
Confidence            679999987654

>2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A*

Probab=96.80  E-value=0.002  Score=60.45  Aligned_cols=74  Identities=23%  Similarity=0.290  Sum_probs=52.0

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|++++|+. +++++..+..+...    .++.+   +..+      .....|
T Consensus         5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   84 (249)
T 2ew8_A            5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   84 (249)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHcCCCC
Confidence            67899999996 6999999999999999999999998 77665444444321    12222   1110      124679


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus        85 ~lv~nAg~~   93 (249)
T 2ew8_A           85 ILVNNAGIY   93 (249)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999987653

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=96.79  E-value=0.00095  Score=63.47  Aligned_cols=74  Identities=16%  Similarity=0.213  Sum_probs=53.0

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHHH-HHHHHHHhcCCc----ccccc---cccc------CCC-
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFER-AKSLASDVMGAA----RPFED---ILNF------QPE-  362 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~~~-a~~la~~~~~~~----~~~~~---l~~~------~~~-  362 (454)
                      +++|+++|.|+   ||+|++++..|++.|++|++++|+.++ .++++++++...    .++.+   +..+      ... 
T Consensus         5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~   84 (269)
T 2h7i_A            5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAKAPLLELDVQNEEHLASLAGRVTEAIGA   84 (269)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSCCCEEECCTTCHHHHHHHHHHHHHHHCT
T ss_pred             cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHHHHHHHHhcCCCceEEEccCCCHHHHHHHHHHHHHHhCC
Confidence            67899999995   899999999999999999999999876 467766654321    12221   1110      112 


Q ss_pred             --CccEEEECCCCC
Q 012866          363 --KGAILANATPLG  374 (454)
Q Consensus       363 --~~divInat~~g  374 (454)
                        ..|++||+....
T Consensus        85 ~~~iD~lv~nAg~~   98 (269)
T 2h7i_A           85 GNKLDGVVHSIGFM   98 (269)
T ss_dssp             TCCEEEEEECCCCC
T ss_pred             CCCceEEEECCccC
Confidence              689999987643

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.79  E-value=0.03  Score=56.70  Aligned_cols=129  Identities=16%  Similarity=0.152  Sum_probs=86.0

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-CCCeEE-EEeC----------CHHHHH
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGARVV-IFDI----------DFERAK  340 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~G~~v~-i~nR----------t~~~a~  340 (454)
                      -+.|.+.+++..+.+.         +.++++++|.|.|.|.+|+.++..|.+ +|++|+ |.++          +.+...
T Consensus       188 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~  258 (415)
T 2tmg_A          188 TGRGVKVCAGLAMDVL---------GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELI  258 (415)
T ss_dssp             HHHHHHHHHHHHHHHT---------TCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHHc---------CCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHH
Confidence            3567777877776632         357899999999999999999999999 999655 7777          778888


Q ss_pred             HHHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecCCCCCHHHHH
Q 012866          341 SLASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPRKTRLLKD  410 (454)
Q Consensus       341 ~la~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~P~~T~ll~~  410 (454)
                      ++.++.+.-       .++-+++   ...++|++|.|+.-+.        +..+   .+ ..++|+.-.-.|-...--+.
T Consensus       259 ~~~~~~g~l~~y~~a~~~~~~ei---l~~~~DIliP~A~~n~--------i~~~~a~~l-~ak~V~EgAN~p~t~~a~~~  326 (415)
T 2tmg_A          259 RYKKEHGTVVTYPKGERITNEEL---LELDVDILVPAALEGA--------IHAGNAERI-KAKAVVEGANGPTTPEADEI  326 (415)
T ss_dssp             HHHHHSSCSTTCSSSEEECHHHH---TTCSCSEEEECSSTTS--------BCHHHHTTC-CCSEEECCSSSCBCHHHHHH
T ss_pred             HHHHhhCCcccCCCceEcCchhh---hcCCCcEEEecCCcCc--------cCcccHHHc-CCeEEEeCCCcccCHHHHHH
Confidence            877764421       1111122   1246899999886432        2322   23 45788888877753223334


Q ss_pred             HHHCCCceeccH
Q 012866          411 AEAAGAIIVSGV  422 (454)
Q Consensus       411 A~~~G~~~~~Gl  422 (454)
                      -+++|+.+++..
T Consensus       327 l~~~Gi~~~PD~  338 (415)
T 2tmg_A          327 LSRRGILVVPDI  338 (415)
T ss_dssp             HHHTTCEEECHH
T ss_pred             HHHCCCEEEChH
Confidence            446788877443

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.79  E-value=0.0014  Score=59.90  Aligned_cols=69  Identities=20%  Similarity=0.196  Sum_probs=49.3

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccccccccCCCCccEEEECCCCC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~l~~~~~~~~divInat~~g  374 (454)
                      +++|+|+ |+.|++++..|.+.|.+|+++.|+.++++++... +...  .++.+.......+.|+||++....
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~   73 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGA-TVATLVKEPLVLTEADLDSVDAVVDALSVP   73 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCT-TSEEEECCGGGCCHHHHTTCSEEEECCCCC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCC-CceEEecccccccHhhcccCCEEEECCccC
Confidence            5899997 8999999999999999999999999887765321 1111  122222111345789999988764

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.78  E-value=0.0007  Score=67.46  Aligned_cols=112  Identities=19%  Similarity=0.232  Sum_probs=74.0

Q ss_pred             CceEEEEccchhHHHHHHHHH-HC-CCeE-EEEeCCHHHHHHHHHHhcCCc---cccccccccCCCCccEEEECCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAK-SR-GARV-VIFDIDFERAKSLASDVMGAA---RPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~-~~-G~~v-~i~nRt~~~a~~la~~~~~~~---~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      .-++.|||+|.+|+..+.+|. .. +++| .|++|+.+++++++++++...   .+++++-+  ..+.|+|+.|||....
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h  100 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLIN--DKDVEVVIITASNEAH  100 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHH--CTTCCEEEECSCGGGH
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhc--CCCCCEEEEcCCcHHH
Confidence            348999999999999999998 43 5664 599999999999999998322   23444322  2468999999986543


Q ss_pred             CCCCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCce-eccHH
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAII-VSGVE  423 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~-~~Gl~  423 (454)
                      .     .+-...+..+.-|+  +=+|.-      -.+.+.|++.|..+ .-|..
T Consensus       101 ~-----~~~~~al~aGk~Vl--~EKPla~~~~e~~~l~~~a~~~g~~~~~v~~~  147 (357)
T 3ec7_A          101 A-----DVAVAALNANKYVF--CEKPLAVTAADCQRVIEAEQKNGKRMVQIGFM  147 (357)
T ss_dssp             H-----HHHHHHHHTTCEEE--EESSSCSSHHHHHHHHHHHHHHTSCCEEEECG
T ss_pred             H-----HHHHHHHHCCCCEE--eecCccCCHHHHHHHHHHHHHhCCeEEEEeec
Confidence            1     12234455554333  335642      23667778888765 44443

>3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.0024  Score=61.58  Aligned_cols=46  Identities=22%  Similarity=0.420  Sum_probs=41.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGA---RVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~---~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|++||.|+ ||+|++++..|++.|+   +|++++|+.++++++++++
T Consensus        31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~~~~~~~l   80 (287)
T 3rku_A           31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTI   80 (287)
T ss_dssp             HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHHHHHHHHH
Confidence            57899999996 6999999999999887   9999999999999888766

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=96.78  E-value=0.0018  Score=61.73  Aligned_cols=48  Identities=31%  Similarity=0.413  Sum_probs=40.1

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~n-Rt~~~a~~la~~~  346 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|.+.. |+.++++++++++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l   76 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEI   76 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            3578999999996 6999999999999999988874 5567777777665

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=96.78  E-value=0.00083  Score=66.31  Aligned_cols=112  Identities=17%  Similarity=0.198  Sum_probs=73.8

Q ss_pred             CceEEEEccchhHHHHHHHHH-HC-CCe-EEEEeCCHHHHHHHHHHhcCC-c-cccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAK-SR-GAR-VVIFDIDFERAKSLASDVMGA-A-RPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~-~~-G~~-v~i~nRt~~~a~~la~~~~~~-~-~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ..++.|||+|.+|+..+..|. +. |++ +.+++|+.+++++++++++.. . .+++++-+  -.+.|+|+.|||.....
T Consensus         8 ~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~--~~~~D~V~i~tp~~~h~   85 (346)
T 3cea_A            8 PLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMID--TENIDAIFIVAPTPFHP   85 (346)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHT--TSCCSEEEECSCGGGHH
T ss_pred             cceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhc--CCCCCEEEEeCChHhHH
Confidence            358999999999999999988 54 566 578999999999999988762 1 23333211  13689999999854321


Q ss_pred             CCCCCCCChhcccCCcEEEEEecCCCC-C-----HHHHHHHHC-CCceeccHH
Q 012866          378 NTDRVPVSEETLRDYQLVFDAVYTPRK-T-----RLLKDAEAA-GAIIVSGVE  423 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~~~v~D~~y~P~~-T-----~ll~~A~~~-G~~~~~Gl~  423 (454)
                           .+....++.+..|+  +=+|.. +     .+.+.|++. |..+.-|..
T Consensus        86 -----~~~~~al~~G~~v~--~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~~~  131 (346)
T 3cea_A           86 -----EMTIYAMNAGLNVF--CEKPLGLDFNEVDEMAKVIKSHPNQIFQSGFM  131 (346)
T ss_dssp             -----HHHHHHHHTTCEEE--ECSCCCSCHHHHHHHHHHHHTCTTSCEECCCG
T ss_pred             -----HHHHHHHHCCCEEE--EcCCCCCCHHHHHHHHHHHHhCCCCeEEEecc
Confidence                 12234455555333  223432 2     366777888 887766543

>3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis}

Probab=96.78  E-value=0.001  Score=63.45  Aligned_cols=73  Identities=23%  Similarity=0.247  Sum_probs=54.3

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccEE
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAIL  367 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~div  367 (454)
                      .+|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+.++...    .++.+   +..+      .....|+|
T Consensus         4 ~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~id~l   83 (281)
T 3m1a_A            4 SAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEALDDLVAAYPDRAEAISLDVTDGERIDVVAADVLARYGRVDVL   83 (281)
T ss_dssp             CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCSEE
T ss_pred             CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCCceEEEeeCCCHHHHHHHHHHHHHhCCCCCEE
Confidence            5789999996 799999999999999999999999999998888765432    12222   1110      11357999


Q ss_pred             EECCCCC
Q 012866          368 ANATPLG  374 (454)
Q Consensus       368 Inat~~g  374 (454)
                      ||+....
T Consensus        84 v~~Ag~~   90 (281)
T 3m1a_A           84 VNNAGRT   90 (281)
T ss_dssp             EECCCCE
T ss_pred             EECCCcC
Confidence            9987653

>1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2

Probab=96.78  E-value=0.0014  Score=62.02  Aligned_cols=48  Identities=33%  Similarity=0.521  Sum_probs=41.4

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.| +.++.+++.+++
T Consensus        17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~l   66 (274)
T 1ja9_A           17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL   66 (274)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHH
Confidence            4578899999996 79999999999999999999999 888877776655

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.77  E-value=0.0012  Score=68.70  Aligned_cols=113  Identities=15%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH-Hhc-CCcccccccccc--CCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS-DVM-GAARPFEDILNF--QPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~-~~~-~~~~~~~~l~~~--~~~~~divInat~~g~~p~~  379 (454)
                      .++.|||+|.+|.+++..|++.|++|+++||+.++++++.+ +.. .......++.++  .++++|+||-++|.+..  .
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~--v   80 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQA--V   80 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHH--H
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHH--H
Confidence            46999999999999999999999999999999999999876 311 111111222221  12478999999986411  0


Q ss_pred             CCCCCC--hhcccCCcEEEEEecCCC-CC-HHHHHHHHCCCcee
Q 012866          380 DRVPVS--EETLRDYQLVFDAVYTPR-KT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       380 ~~~~i~--~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~~~~  419 (454)
                      +. .+.  ...++++.+++|+.-... .| .+.+..++.|+.++
T Consensus        81 ~~-vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v  123 (482)
T 2pgd_A           81 DN-FIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (482)
T ss_dssp             HH-HHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             HH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEe
Confidence            10 011  123567789999864432 33 34444555676544

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=96.76  E-value=0.002  Score=63.63  Aligned_cols=121  Identities=16%  Similarity=0.229  Sum_probs=88.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ..+.++++.|+|.|.+|++++..+...|++|..++|.....   ..+.+....+++++    ++++|+|+..+|..  +.
T Consensus       137 ~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~---~~~~~~~~~~l~el----l~~sDivslh~Plt--~~  207 (334)
T 3kb6_A          137 RELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED---LKEKGCVYTSLDEL----LKESDVISLHVPYT--KE  207 (334)
T ss_dssp             CCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH---HHHTTCEECCHHHH----HHHCSEEEECCCCC--TT
T ss_pred             ceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccchh---hhhcCceecCHHHH----HhhCCEEEEcCCCC--hh
Confidence            46789999999999999999999999999999999875432   12223333344433    45789999999974  33


Q ss_pred             CCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHHHHHH
Q 012866          379 TDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMFLRQA  429 (454)
Q Consensus       379 ~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~mlv~Qa  429 (454)
                      + .-.++.+.   ++++.+++.+.-.+. ++.-|-+|-+.|...--|+|.+-..-
T Consensus       208 T-~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EP  261 (334)
T 3kb6_A          208 T-HHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEE  261 (334)
T ss_dssp             T-TTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHH
T ss_pred             h-ccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCC
Confidence            2 23467654   578889998887766 67777888888877767777664443

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=96.76  E-value=0.0033  Score=60.01  Aligned_cols=47  Identities=23%  Similarity=0.346  Sum_probs=39.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID------------FERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt------------~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+            .++.+++.+.+
T Consensus         7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~   66 (281)
T 3s55_A            7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVGYPLATADDLAETVALV   66 (281)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccccccccHHHHHHHHHHH
Confidence            578999999996 699999999999999999999997            56666655443

>2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2

Probab=96.76  E-value=0.0011  Score=62.05  Aligned_cols=73  Identities=27%  Similarity=0.410  Sum_probs=52.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccc---cccc--CCCCccEEEECC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFED---ILNF--QPEKGAILANAT  371 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~~~---l~~~--~~~~~divInat  371 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|++++|+.+++++++ ++.. ..  .++.+   +.+.  .....|+|||+.
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~-~~~~~~~~~~D~~~~~~~~~~~~~~~~id~lv~~A   82 (246)
T 2ag5_A            4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE-KYPGIQTRVLDVTKKKQIDQFANEVERLDVLFNVA   82 (246)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGG-GSTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-hccCceEEEeeCCCHHHHHHHHHHhCCCCEEEECC
Confidence            56899999996 69999999999999999999999998877765 4321 11  12221   1110  134679999987


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      ...
T Consensus        83 g~~   85 (246)
T 2ag5_A           83 GFV   85 (246)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            643

>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*

Probab=96.76  E-value=0.0017  Score=61.04  Aligned_cols=45  Identities=18%  Similarity=0.229  Sum_probs=40.1

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHH-CCCeEEEEeCCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKS-RGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~-~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++|+++|.|+ ||+|++++..|.+ .|++|+++.|+.++++++.+++
T Consensus         3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l   49 (276)
T 1wma_A            3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQL   49 (276)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHH
Confidence            4789999996 7999999999999 9999999999999888877665

>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2

Probab=96.75  E-value=0.0018  Score=63.60  Aligned_cols=46  Identities=22%  Similarity=0.292  Sum_probs=40.8

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~n-Rt~~~a~~la~~~  346 (454)
                      +++|++||.|+ ||+|++++..|++.|++|+++. |+.++++++++++
T Consensus        44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~~~~~~~l   91 (328)
T 2qhx_A           44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATL   91 (328)
T ss_dssp             -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            67899999996 6999999999999999999999 9999988887765

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=96.75  E-value=0.0029  Score=61.91  Aligned_cols=74  Identities=19%  Similarity=0.244  Sum_probs=53.9

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------C-cccc-ccccccCCCCccEEEECCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG-------A-ARPF-EDILNFQPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~-------~-~~~~-~~l~~~~~~~~divInat~  372 (454)
                      ..++.|||+|.+|.+++..|+..|. +|++++|+.++++..+.++..       . .+.. .++ + .+.++|+||.|.+
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~-a~~~aDiVi~avg   81 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-A-DISGSDVVIITAS   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-G-GGTTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-H-HhCCCCEEEEeCC
Confidence            3589999999999999999999998 999999998887765322211       1 1111 334 2 3578999999997


Q ss_pred             CCCCCC
Q 012866          373 LGMHPN  378 (454)
Q Consensus       373 ~g~~p~  378 (454)
                      .+..|.
T Consensus        82 ~p~~~g   87 (317)
T 2ewd_A           82 IPGRPK   87 (317)
T ss_dssp             CSSCCS
T ss_pred             CCCCCC
Confidence            765553

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=96.74  E-value=0.0022  Score=61.20  Aligned_cols=47  Identities=23%  Similarity=0.454  Sum_probs=40.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID------------FERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt------------~~~a~~la~~~  346 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+            .++.+++..++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   66 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEV   66 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHH
Confidence            578999999996 699999999999999999999987            66666665544

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=96.74  E-value=0.0024  Score=61.14  Aligned_cols=47  Identities=21%  Similarity=0.331  Sum_probs=40.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~  346 (454)
                      .+.+|.++|.|+ ||+|++++..|++.|++|++++| +.++++++++++
T Consensus        26 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~   74 (280)
T 4da9_A           26 QKARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEGVAPVIAEL   74 (280)
T ss_dssp             CCCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred             ccCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHH
Confidence            467899999996 69999999999999999999885 888888877665

>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}

Probab=96.73  E-value=0.00033  Score=66.93  Aligned_cols=41  Identities=22%  Similarity=0.364  Sum_probs=35.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|++++|+.++.
T Consensus        10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~   51 (269)
T 3vtz_A           10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD   51 (269)
T ss_dssp             CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc
Confidence            4678999999996 6999999999999999999999987654

>2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa}

Probab=96.73  E-value=0.0016  Score=62.18  Aligned_cols=47  Identities=26%  Similarity=0.327  Sum_probs=40.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+. |+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++.
T Consensus        19 ~~~-k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~~   66 (272)
T 2nwq_A           19 HMS-STLFITGATSGFGEACARRFAEAGWSLVLTGRREERLQALAGELS   66 (272)
T ss_dssp             --C-CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT
T ss_pred             CcC-cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh
Confidence            345 88999996 699999999999999999999999999998887764

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=96.72  E-value=0.0023  Score=60.32  Aligned_cols=48  Identities=23%  Similarity=0.412  Sum_probs=43.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++.
T Consensus         3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   51 (257)
T 3imf_A            3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKLEEAKLEIE   51 (257)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999996 699999999999999999999999999999888774

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.72  E-value=0.0023  Score=60.64  Aligned_cols=49  Identities=27%  Similarity=0.336  Sum_probs=44.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++.
T Consensus         6 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   55 (262)
T 3pk0_A            6 FDLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTADIDACVADLD   55 (262)
T ss_dssp             TCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            4578999999996 699999999999999999999999999998887764

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=96.72  E-value=0.003  Score=58.88  Aligned_cols=48  Identities=27%  Similarity=0.414  Sum_probs=43.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++++
T Consensus        10 ~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   58 (247)
T 3i1j_A           10 ELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQI   58 (247)
T ss_dssp             TTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHH
Confidence            4578999999996 69999999999999999999999999998887766

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=96.71  E-value=0.0023  Score=60.92  Aligned_cols=45  Identities=22%  Similarity=0.471  Sum_probs=41.4

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l   48 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGAKILLGARRQARIEAIATEI   48 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            5789999996 69999999999999999999999999999988776

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=96.71  E-value=0.0023  Score=60.20  Aligned_cols=47  Identities=21%  Similarity=0.389  Sum_probs=42.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (250)
T 3nyw_A            4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNLEKVHDEI   51 (250)
T ss_dssp             -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            357899999996 69999999999999999999999999998887765

>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}

Probab=96.70  E-value=0.0011  Score=63.10  Aligned_cols=74  Identities=19%  Similarity=0.199  Sum_probs=50.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC--cccccc---cccc------CCCCccEE
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA--ARPFED---ILNF------QPEKGAIL  367 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~--~~~~~~---l~~~------~~~~~div  367 (454)
                      .+.+|++||.|+ ||+|++++..|++.|++|++++|+.++++++... ...  ..++.+   +..+      .....|++
T Consensus        13 ~~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD~l   91 (266)
T 3p19_A           13 GSMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVERLKALNLP-NTLCAQVDVTDKYTFDTAITRAEKIYGPADAI   91 (266)
T ss_dssp             --CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHHHHTTCCT-TEEEEECCTTCHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHhhcC-CceEEEecCCCHHHHHHHHHHHHHHCCCCCEE
Confidence            467899999996 6999999999999999999999998887665321 100  112211   1110      12367999


Q ss_pred             EECCCCC
Q 012866          368 ANATPLG  374 (454)
Q Consensus       368 Inat~~g  374 (454)
                      ||+....
T Consensus        92 vnnAg~~   98 (266)
T 3p19_A           92 VNNAGMM   98 (266)
T ss_dssp             EECCCCC
T ss_pred             EECCCcC
Confidence            9988654

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=96.70  E-value=0.003  Score=59.81  Aligned_cols=48  Identities=27%  Similarity=0.405  Sum_probs=43.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++.
T Consensus         8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   56 (264)
T 3ucx_A            8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERLEDVAKQVT   56 (264)
T ss_dssp             TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHH
Confidence            478999999996 599999999999999999999999999998887763

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=96.69  E-value=0.0012  Score=65.54  Aligned_cols=116  Identities=20%  Similarity=0.131  Sum_probs=72.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      .+++.|||.|-+|.+++..|.+.|.+|++++|++++++.+ .+.+... .+.+++-.....++|+||-|+|......   
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a-~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~---   83 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSA-VDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDS---   83 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHH-HHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHH---
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHH---
Confidence            3579999999999999999999999999999999887764 4455432 1222211001124699999998532111   


Q ss_pred             CCCCh-hcccCCcEEEEEecCCCCCHHHHHHHHC--CCceeccHHHH
Q 012866          382 VPVSE-ETLRDYQLVFDAVYTPRKTRLLKDAEAA--GAIIVSGVEMF  425 (454)
Q Consensus       382 ~~i~~-~~l~~~~~v~D~~y~P~~T~ll~~A~~~--G~~~~~Gl~ml  425 (454)
                       .+.. ..+.++.++.|+.-.  .+..+++.++.  +..+++|-.|.
T Consensus        84 -vl~~l~~~~~~~iv~Dv~Sv--k~~i~~~~~~~~~~~~~v~~HPma  127 (341)
T 3ktd_A           84 -LLDAVHTHAPNNGFTDVVSV--KTAVYDAVKARNMQHRYVGSHPMA  127 (341)
T ss_dssp             -HHHHHHHHCTTCCEEECCSC--SHHHHHHHHHTTCGGGEECEEECC
T ss_pred             -HHHHHHccCCCCEEEEcCCC--ChHHHHHHHHhCCCCcEecCCccc
Confidence             0110 113577889998654  33445555554  23455544443

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=96.68  E-value=0.0013  Score=64.44  Aligned_cols=91  Identities=18%  Similarity=0.095  Sum_probs=59.3

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeC--CHHHHHHHHHHhc-----C-----CccccccccccCCCCccEEEECCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDI--DFERAKSLASDVM-----G-----AARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nR--t~~~a~~la~~~~-----~-----~~~~~~~l~~~~~~~~divInat~  372 (454)
                      ++.|||+|.+|.+++..|.+.|.+|++++|  +.++++.+.+...     .     ...+.+++.+ ...++|+||.|+|
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~D~vi~~v~   80 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEK-CLENAEVVLLGVS   80 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH-HHTTCSEEEECSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHH-HHhcCCEEEEcCC
Confidence            589999999999999999999999999999  9998888765421     0     0001012222 2457899999998


Q ss_pred             CCCCCCCCCCCCChhcccCCcEEEEEe
Q 012866          373 LGMHPNTDRVPVSEETLRDYQLVFDAV  399 (454)
Q Consensus       373 ~g~~p~~~~~~i~~~~l~~~~~v~D~~  399 (454)
                      .......- ..+. . +.++.+++++.
T Consensus        81 ~~~~~~v~-~~i~-~-l~~~~~vv~~~  104 (335)
T 1txg_A           81 TDGVLPVM-SRIL-P-YLKDQYIVLIS  104 (335)
T ss_dssp             GGGHHHHH-HHHT-T-TCCSCEEEECC
T ss_pred             hHHHHHHH-HHHh-c-CCCCCEEEEEc
Confidence            53211000 0011 2 45566777775

>2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix}

Probab=96.68  E-value=0.0032  Score=59.37  Aligned_cols=47  Identities=28%  Similarity=0.476  Sum_probs=41.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (260)
T 2z1n_A            4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKLEAAASRI   51 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            367899999996 69999999999999999999999999888877665

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=96.68  E-value=0.0033  Score=58.89  Aligned_cols=47  Identities=30%  Similarity=0.497  Sum_probs=42.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+.+|+++|.|+ ||.|++++..|++.|++|++++|+.++.+++++++
T Consensus         4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (247)
T 2jah_A            4 ALQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKLRALGDEL   51 (247)
T ss_dssp             TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            367899999996 69999999999999999999999999988887766

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=96.68  E-value=0.0017  Score=60.15  Aligned_cols=70  Identities=11%  Similarity=-0.029  Sum_probs=49.6

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCCc--cccc---cccccCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSR--GARVVIFDIDFERAKSLASDVMGAA--RPFE---DILNFQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~--G~~v~i~nRt~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~divInat~~  373 (454)
                      .+++++|+|+ |+.|++++..|.+.  |++|+++.|+.++.+.+..  +...  .++.   ++.+ ...+.|+||++...
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~--~~~~~~~D~~d~~~~~~-~~~~~d~vi~~a~~   79 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG--EADVFIGDITDADSINP-AFQGIDALVILTSA   79 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC--CTTEEECCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCC--CeeEEEecCCCHHHHHH-HHcCCCEEEEeccc
Confidence            4688999995 89999999999999  7899999999887665411  1111  1222   2322 24568999998764


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      .
T Consensus        80 ~   80 (253)
T 1xq6_A           80 V   80 (253)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.67  E-value=0.0045  Score=60.28  Aligned_cols=71  Identities=24%  Similarity=0.277  Sum_probs=50.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+.++....       +...+.+  .+.++|+||.|++...
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~--a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHS--ELADAQVVILTAGANQ   79 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGG--GGTTCSEEEECC----
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHH--HhCCCCEEEEcCCCCC
Confidence            68999999999999999999997  89999999998887766654211       1112222  3578999999997654


Q ss_pred             CC
Q 012866          376 HP  377 (454)
Q Consensus       376 ~p  377 (454)
                      .|
T Consensus        80 ~~   81 (304)
T 2v6b_A           80 KP   81 (304)
T ss_dssp             --
T ss_pred             CC
Confidence            44

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=96.67  E-value=0.0048  Score=59.56  Aligned_cols=76  Identities=17%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             CCCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHH---HHHHHhcCCc---ccccc---cccc------C
Q 012866          299 SPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAK---SLASDVMGAA---RPFED---ILNF------Q  360 (454)
Q Consensus       299 ~~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a~---~la~~~~~~~---~~~~~---l~~~------~  360 (454)
                      ..+++|++||.|++   |+|++++..|++.|++|++++|+.+..+   ++.+..+...   +++.+   +..+      .
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~  105 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEE  105 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHH
Confidence            45789999999985   9999999999999999999999975443   3344443211   12221   1110      1


Q ss_pred             CCCccEEEECCCCC
Q 012866          361 PEKGAILANATPLG  374 (454)
Q Consensus       361 ~~~~divInat~~g  374 (454)
                      ....|++||+....
T Consensus       106 ~g~iD~lVnnAG~~  119 (296)
T 3k31_A          106 WGSLDFVVHAVAFS  119 (296)
T ss_dssp             HSCCSEEEECCCCC
T ss_pred             cCCCCEEEECCCcC
Confidence            13679999987653

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.66  E-value=0.0027  Score=63.36  Aligned_cols=71  Identities=13%  Similarity=0.157  Sum_probs=55.0

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc---cccccCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE---DILNFQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~---~l~~~~~~~~divInat~~  373 (454)
                      .|++|+|+|+|++|.+++..++..|++|+++.|+.++.+.+.++++... ++..   .+.+ ....+|++|++++.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~-~~~~~D~vid~~g~  261 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQA-AAGTLDGIIDTVSA  261 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHH-TTTCEEEEEECCSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHH-hhCCCCEEEECCCc
Confidence            5789999999999999999999999999999999988777666777542 2222   2222 23468999999864

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=96.66  E-value=0.0049  Score=58.22  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCC-c--ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGA-A--RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~-~--~~~~~---l~~~------~~~  362 (454)
                      +++|+++|.|+   ||.|++++..|++.|++|++++|+.   +.++++.+..+.. .  .++.+   +..+      ...
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   86 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQLGSDIVLQCDVAEDASIDTMFAELGKVWP   86 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHTTCS
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhcCCcEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56899999997   6999999999999999999999987   4445554443321 1  12221   1110      123


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|+|||+....
T Consensus        87 ~iD~lv~~Ag~~   98 (265)
T 1qsg_A           87 KFDGFVHSIGFA   98 (265)
T ss_dssp             SEEEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            679999988653

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=96.66  E-value=0.0019  Score=61.07  Aligned_cols=75  Identities=23%  Similarity=0.209  Sum_probs=51.4

Q ss_pred             CCCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcCC-c--ccccc---cccc------CC
Q 012866          300 PLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVMGA-A--RPFED---ILNF------QP  361 (454)
Q Consensus       300 ~~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~~---~a~~la~~~~~~-~--~~~~~---l~~~------~~  361 (454)
                      .+++|+++|.|+   ||.|++++..|++.|++|+++.|+.+   .++++.+.++.. .  .++.+   +...      ..
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~   84 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLRPEAEKLAEALGGALLFRADVTQDEELDALFAGVKEAF   84 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHHc
Confidence            467899999997   69999999999999999999999875   445555544321 1  12222   1110      11


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|+|||+....
T Consensus        85 g~iD~lv~~Ag~~   97 (261)
T 2wyu_A           85 GGLDYLVHAIAFA   97 (261)
T ss_dssp             SSEEEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            3579999987653

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.65  E-value=0.0039  Score=61.03  Aligned_cols=74  Identities=20%  Similarity=0.274  Sum_probs=54.9

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc------c--ccccccccCCCCccEEEECCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA------R--PFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~------~--~~~~l~~~~~~~~divInat~  372 (454)
                      ..++.|||+|.+|.++++.|+..|.  +|++++++.++++..+.++....      .  ..++ .+ .+.++|+||.|++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~-~~-al~~aDvViia~~   83 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGD-YD-DCRDADLVVICAG   83 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECC-GG-GTTTCSEEEECCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCc-HH-HhCCCCEEEEcCC
Confidence            3689999999999999999988775  89999999988776655443210      0  1112 22 4678999999999


Q ss_pred             CCCCCC
Q 012866          373 LGMHPN  378 (454)
Q Consensus       373 ~g~~p~  378 (454)
                      ++..|.
T Consensus        84 ~~~~~g   89 (316)
T 1ldn_A           84 ANQKPG   89 (316)
T ss_dssp             CCCCTT
T ss_pred             CCCCCC
Confidence            877665

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=96.65  E-value=0.0029  Score=59.64  Aligned_cols=48  Identities=23%  Similarity=0.353  Sum_probs=42.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus        10 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   58 (260)
T 2zat_A           10 KPLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENVDRTVATL   58 (260)
T ss_dssp             CTTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3477899999996 69999999999999999999999999888776665

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=96.65  E-value=0.0034  Score=60.00  Aligned_cols=49  Identities=20%  Similarity=0.427  Sum_probs=43.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++.
T Consensus         7 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~   56 (281)
T 3svt_A            7 LSFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKLAGAVQELE   56 (281)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            3578999999996 699999999999999999999999999988887764

>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}

Probab=96.64  E-value=0.0025  Score=61.21  Aligned_cols=39  Identities=28%  Similarity=0.445  Sum_probs=35.1

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.+
T Consensus         5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~   44 (285)
T 3sc4_A            5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAE   44 (285)
T ss_dssp             -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCS
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChh
Confidence            4578999999996 69999999999999999999999876

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.64  E-value=0.0013  Score=67.24  Aligned_cols=100  Identities=17%  Similarity=0.141  Sum_probs=65.9

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC--------------ccc-cccccccCCCCccEE
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA--------------ARP-FEDILNFQPEKGAIL  367 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~--------------~~~-~~~l~~~~~~~~div  367 (454)
                      -.++.|||+|-+|.+++..|++ |.+|++++|++++.+++.+.....              .+. ..++.+ .+.++|+|
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~e-a~~~aDvV  113 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHD-AYRNADYV  113 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHH-HHTTCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHH-HHhCCCEE
Confidence            3589999999999999999988 999999999999998886531100              000 112222 34678999


Q ss_pred             EECCCCCCCCCCCC---CCCC------hhcccCCcEEEEEecCCCCC
Q 012866          368 ANATPLGMHPNTDR---VPVS------EETLRDYQLVFDAVYTPRKT  405 (454)
Q Consensus       368 Inat~~g~~p~~~~---~~i~------~~~l~~~~~v~D~~y~P~~T  405 (454)
                      |-|+|....+....   ..+.      .. ++++.+|+|.+-.|..|
T Consensus       114 iiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgt  159 (432)
T 3pid_A          114 IIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGF  159 (432)
T ss_dssp             EECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTH
T ss_pred             EEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHH
Confidence            99998653221100   0011      12 67788888887666543

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.63  E-value=0.0047  Score=60.77  Aligned_cols=75  Identities=19%  Similarity=0.251  Sum_probs=54.7

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat  371 (454)
                      -.+.++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++....       +..++. + ...++|+||.+.
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~-~-a~~~aDiVvi~a   84 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEY-S-DAKDADLVVITA   84 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCG-G-GGTTCSEEEECC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcH-H-HhcCCCEEEECC
Confidence            346789999999999999999998886  89999999999998777664321       111112 2 357899999987


Q ss_pred             CCCCCC
Q 012866          372 PLGMHP  377 (454)
Q Consensus       372 ~~g~~p  377 (454)
                      +....|
T Consensus        85 g~~~kp   90 (326)
T 3vku_A           85 GAPQKP   90 (326)
T ss_dssp             CCC---
T ss_pred             CCCCCC
Confidence            654333

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=96.63  E-value=0.0041  Score=59.16  Aligned_cols=74  Identities=11%  Similarity=0.190  Sum_probs=51.2

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcC-Cc--ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVMG-AA--RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~~---~a~~la~~~~~-~~--~~~~~---l~~~------~~~  362 (454)
                      +++|+++|.|+   ||+|++++..|++.|++|++++|+.+   ..+++.+..+. ..  .++.+   +..+      ...
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g   83 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLG   83 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56899999997   69999999999999999999999875   45555554432 11  12222   1110      123


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|++||+....
T Consensus        84 ~id~lv~nAg~~   95 (275)
T 2pd4_A           84 SLDFIVHSVAFA   95 (275)
T ss_dssp             CEEEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            679999988654

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=96.63  E-value=0.0029  Score=60.08  Aligned_cols=47  Identities=26%  Similarity=0.391  Sum_probs=42.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus        17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l   64 (266)
T 4egf_A           17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSELDAARRAL   64 (266)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            578999999996 69999999999999999999999999988877665

>3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis}

Probab=96.63  E-value=0.0028  Score=60.10  Aligned_cols=76  Identities=21%  Similarity=0.253  Sum_probs=55.4

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-----Cc----ccccc---cccc--CCCC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-----AA----RPFED---ILNF--QPEK  363 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-----~~----~~~~~---l~~~--~~~~  363 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++..     ..    .++.+   +.+.  ...+
T Consensus         6 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~   85 (267)
T 3t4x_A            6 MQLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENVNETIKEIRAQYPDAILQPVVADLGTEQGCQDVIEKYPK   85 (267)
T ss_dssp             CCCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHCTTCEEEEEECCTTSHHHHHHHHHHCCC
T ss_pred             cccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEecCCCCHHHHHHHHHhcCC
Confidence            3578899999996 6999999999999999999999999998888776531     11    12211   1110  2346


Q ss_pred             ccEEEECCCCC
Q 012866          364 GAILANATPLG  374 (454)
Q Consensus       364 ~divInat~~g  374 (454)
                      .|++||+....
T Consensus        86 id~lv~nAg~~   96 (267)
T 3t4x_A           86 VDILINNLGIF   96 (267)
T ss_dssp             CSEEEECCCCC
T ss_pred             CCEEEECCCCC
Confidence            89999987643

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=96.62  E-value=0.0011  Score=65.85  Aligned_cols=71  Identities=14%  Similarity=0.079  Sum_probs=51.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEE----------eCC---------HHHHHHHHHHhcCC--cc-------
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIF----------DID---------FERAKSLASDVMGA--AR-------  351 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~----------nRt---------~~~a~~la~~~~~~--~~-------  351 (454)
                      +++++|+|+|+||.|..++..|+..|+ +|+|+          ||.         ..||+.+++.+...  .+       
T Consensus        34 L~~~~VlivG~GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~lnp~v~v~~~~~  113 (346)
T 1y8q_A           34 LRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTE  113 (346)
T ss_dssp             HHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHTCTTSEEEEECS
T ss_pred             HhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhHCCCeEEEEEec
Confidence            457899999999999999999999999 99999          454         35788777766421  11       


Q ss_pred             cccc-ccccCCCCccEEEECCC
Q 012866          352 PFED-ILNFQPEKGAILANATP  372 (454)
Q Consensus       352 ~~~~-l~~~~~~~~divInat~  372 (454)
                      .+.+ ..+ ...++|+||+|+-
T Consensus       114 ~~~~~~~~-~~~~~dvVv~~~d  134 (346)
T 1y8q_A          114 DIEKKPES-FFTQFDAVCLTCC  134 (346)
T ss_dssp             CGGGCCHH-HHTTCSEEEEESC
T ss_pred             ccCcchHH-HhcCCCEEEEcCC
Confidence            1111 112 2467899999873

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.62  E-value=0.0045  Score=64.26  Aligned_cols=42  Identities=26%  Similarity=0.410  Sum_probs=38.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      ++|.|||+|-||.+++..|++.|.+|++++|+.++++++.+.
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~   47 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDG   47 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHH
Confidence            579999999999999999999999999999999998887654

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.61  E-value=0.015  Score=59.03  Aligned_cols=130  Identities=15%  Similarity=0.165  Sum_probs=80.9

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeCCH---------------
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDIDF---------------  336 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nRt~---------------  336 (454)
                      -+.|.+.+++..+.+.         +.++++++|+|.|.|.+|+.++..|.++|++|+ |.+.+.               
T Consensus       191 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~  261 (421)
T 2yfq_A          191 TGFGVAVVVRESAKRF---------GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDF  261 (421)
T ss_dssp             HHHHHHHHHHHHHHHT---------TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCH
T ss_pred             hHHHHHHHHHHHHHhc---------CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCH
Confidence            4567777777766532         356889999999999999999999999999655 888882               


Q ss_pred             HHHHHHHHHhcC-------CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecCCCCCH
Q 012866          337 ERAKSLASDVMG-------AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPRKTR  406 (454)
Q Consensus       337 ~~a~~la~~~~~-------~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~P~~T~  406 (454)
                      +...++.+..+.       ..++-+++-   -.++||+|.|+.-+.        +..+   .+ ..++|++-.-.|-...
T Consensus       262 ~~l~~~~~~~g~i~~~~~a~~i~~~~~~---~~~~DIliP~A~~n~--------i~~~~A~~l-~ak~VvEgAN~P~t~e  329 (421)
T 2yfq_A          262 KELLAYKEANKTLIGFPGAERITDEEFW---TKEYDIIVPAALENV--------ITGERAKTI-NAKLVCEAANGPTTPE  329 (421)
T ss_dssp             HHHHHHHHHHCC------------------------CEEECSCSSC--------SCHHHHTTC-CCSEEECCSSSCSCHH
T ss_pred             HHHHHHHHhcCCcccCCCceEeCccchh---cCCccEEEEcCCcCc--------CCcccHHHc-CCeEEEeCCccccCHH
Confidence            666666655442       111112221   235899998875322        3332   23 4578889887775333


Q ss_pred             HHHHHHHCCCceeccHH
Q 012866          407 LLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       407 ll~~A~~~G~~~~~Gl~  423 (454)
                      .-+.-+++|+.++++.-
T Consensus       330 a~~il~~~GI~~~Pd~~  346 (421)
T 2yfq_A          330 GDKVLTERGINLTPDIL  346 (421)
T ss_dssp             HHHHHHHHTCEEECHHH
T ss_pred             HHHHHHHCCCEEEChHH
Confidence            33344467888775543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.61  E-value=0.0018  Score=66.89  Aligned_cols=70  Identities=19%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~divInat~~  373 (454)
                      -+++|+|+|..|+.++..|.+.|.+|+++++++++.+.+.++++...     .+.+-|.+..+.++|++|-+|+-
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            47999999999999999999999999999999999999999887532     23333444357889999988863

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=96.61  E-value=0.0054  Score=60.38  Aligned_cols=73  Identities=21%  Similarity=0.304  Sum_probs=53.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC------cc--ccccccccCCCCccEEEECCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA------AR--PFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~------~~--~~~~l~~~~~~~~divInat~  372 (454)
                      ..++.|+|+|.+|.++++.|+..|.  +|++++++.++++..+.++...      .+  ...+. + ...++|+||.|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~-~-a~~~aDvVvi~ag   82 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTY-E-DCKDADIVCICAG   82 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECG-G-GGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcH-H-HhCCCCEEEEecc
Confidence            4689999999999999999999886  8999999999988866555321      00  11122 2 3578999999876


Q ss_pred             CCCCC
Q 012866          373 LGMHP  377 (454)
Q Consensus       373 ~g~~p  377 (454)
                      ....|
T Consensus        83 ~p~kp   87 (326)
T 3pqe_A           83 ANQKP   87 (326)
T ss_dssp             CCCCT
T ss_pred             cCCCC
Confidence            54333

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=96.61  E-value=0.0034  Score=59.97  Aligned_cols=47  Identities=21%  Similarity=0.262  Sum_probs=42.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus        24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~   71 (277)
T 4fc7_A           24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRVLTAARKL   71 (277)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            478999999996 59999999999999999999999999888776665

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=96.61  E-value=0.009  Score=62.63  Aligned_cols=100  Identities=16%  Similarity=0.085  Sum_probs=59.8

Q ss_pred             CCCCCceEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHH--HHHHHHHHhcCCccccccccccCCCCccEEEECCCCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFE--RAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~ara-i~~~L~~~G~~v~i~nRt~~--~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      .-++.+++.|||.||+|.+ +|..|.++|++|+++++...  ..+.|.+ .+.....=.+-.. ...++|+||-+.  | 
T Consensus        15 ~~~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~-~gi~~~~G~~~~~-~~~~~d~vV~Sp--g-   89 (524)
T 3hn7_A           15 LYFQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQ-AGVTIEEGYLIAH-LQPAPDLVVVGN--A-   89 (524)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHH-TTCEEEESCCGGG-GCSCCSEEEECT--T-
T ss_pred             eeecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHH-CCCEEECCCCHHH-cCCCCCEEEECC--C-
Confidence            4567899999999999997 57778899999999998632  2333322 2221100000000 011234444211  1 


Q ss_pred             CCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHH
Q 012866          376 HPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQ  428 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Q  428 (454)
                                               -|...|.+++|+++|++++...++|.++
T Consensus        90 -------------------------i~~~~p~l~~a~~~gi~v~~~~e~l~~~  117 (524)
T 3hn7_A           90 -------------------------MKRGMDVIEYMLDTGLRYTSGPQFLSEQ  117 (524)
T ss_dssp             -------------------------CCTTSHHHHHHHHHTCCEEEHHHHHHHH
T ss_pred             -------------------------cCCCCHHHHHHHHCCCcEEEHHHHHHHH
Confidence                                     1446788999999999999999977653

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=96.60  E-value=0.0053  Score=58.73  Aligned_cols=74  Identities=15%  Similarity=0.158  Sum_probs=51.1

Q ss_pred             CCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcC-Cc--ccccc---cccc------CCC
Q 012866          301 LAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVMG-AA--RPFED---ILNF------QPE  362 (454)
Q Consensus       301 ~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~~---~a~~la~~~~~-~~--~~~~~---l~~~------~~~  362 (454)
                      +++|+++|.|+   ||+|++++..|++.|++|++++|+.+   .++++.+..+. ..  .++.+   +..+      ...
T Consensus        19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g   98 (285)
T 2p91_A           19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWG   98 (285)
T ss_dssp             TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred             cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            67899999997   69999999999999999999999875   44455444332 11  12221   1110      123


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|+|||+....
T Consensus        99 ~iD~lv~~Ag~~  110 (285)
T 2p91_A           99 SLDIIVHSIAYA  110 (285)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CCCEEEECCCCC
Confidence            679999988653

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.60  E-value=0.00066  Score=61.02  Aligned_cols=68  Identities=16%  Similarity=0.070  Sum_probs=47.0

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccc---cccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFE---DILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~divInat~~  373 (454)
                      ++++|+|+ |+.|++++..|.+.|.+|+++.|+.++.+.+. .-+...  .++.   ++.+ ..+++|+||++.+.
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~~D~~~~~~~~~-~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG-PRPAHVVVGDVLQAADVDK-TVAGQDAVIVLLGT   77 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSS-CCCSEEEESCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhccccc-CCceEEEEecCCCHHHHHH-HHcCCCEEEECccC
Confidence            68999997 89999999999999999999999987643221 001111  1222   2222 24568999998864

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.59  E-value=0.0039  Score=61.56  Aligned_cols=69  Identities=22%  Similarity=0.161  Sum_probs=53.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .|.+|||+|+|++|.+++..++..|++|+++.++.++.+ +++++|...+- .+... ....+|+++++++.
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~-~~~~lGa~~v~-~~~~~-~~~~~D~vid~~g~  244 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQ-DALSMGVKHFY-TDPKQ-CKEELDFIISTIPT  244 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHH-HHHHTTCSEEE-SSGGG-CCSCEEEEEECCCS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHhcCCCeec-CCHHH-HhcCCCEEEECCCc
Confidence            578999999999999999999999999999999988865 55678765322 22222 22378999998864

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=96.59  E-value=0.0012  Score=61.08  Aligned_cols=71  Identities=15%  Similarity=0.114  Sum_probs=49.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc--ccc---ccccccCCCCccEEEECCC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--RPF---EDILNFQPEKGAILANATP  372 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~--~~~---~~l~~~~~~~~divInat~  372 (454)
                      ..+++++|+|+ |+.|++++..|.+.|+  +|++++|+.++.+.+... +...  .++   +++.+ ...+.|+|||+..
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~-~~~~~~~D~~d~~~~~~-~~~~~d~vi~~ag   93 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYK-NVNQEVVDFEKLDDYAS-AFQGHDVGFCCLG   93 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGG-GCEEEECCGGGGGGGGG-GGSSCSEEEECCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccC-CceEEecCcCCHHHHHH-HhcCCCEEEECCC
Confidence            35789999995 8999999999999999  999999987654322111 1111  222   23333 3457899999886


Q ss_pred             C
Q 012866          373 L  373 (454)
Q Consensus       373 ~  373 (454)
                      .
T Consensus        94 ~   94 (242)
T 2bka_A           94 T   94 (242)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=96.59  E-value=0.0025  Score=61.14  Aligned_cols=48  Identities=29%  Similarity=0.460  Sum_probs=43.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++.
T Consensus         5 ~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~   53 (280)
T 3tox_A            5 RLEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNALAELTDEIA   53 (280)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            367899999996 699999999999999999999999999999988774

>2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8}

Probab=96.58  E-value=0.002  Score=59.84  Aligned_cols=44  Identities=30%  Similarity=0.446  Sum_probs=38.2

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~  346 (454)
                      +|+++|.|+ ||.|++++..|.+.|++|+++ +|+.++++++.+++
T Consensus         1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~~~~~~~~   46 (245)
T 2ph3_A            1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKAEEVAEEA   46 (245)
T ss_dssp             CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            368999986 699999999999999998887 99999888876654

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=96.58  E-value=0.0027  Score=60.91  Aligned_cols=47  Identities=26%  Similarity=0.389  Sum_probs=39.8

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   77 (281)
T 4dry_A           30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVLDAAAGEI   77 (281)
T ss_dssp             ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            467999999996 69999999999999999999999999988887765

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=96.58  E-value=0.083  Score=53.64  Aligned_cols=131  Identities=18%  Similarity=0.178  Sum_probs=79.6

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCC-CCCceEEEEccchhHHHHHHHHHH-CCCeEEEEeCC-----------HHHH
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSP-LAGRMFVLAGAGGAGRALAFGAKS-RGARVVIFDID-----------FERA  339 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~-~~~k~vlViGaGG~arai~~~L~~-~G~~v~i~nRt-----------~~~a  339 (454)
                      -+.|.+.+++..+.+.         +.+ ++++++.|+|.|.+|+.++..|.. +|++|..+++.           .+..
T Consensus       190 Tg~Gv~~~~~~~~~~~---------G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~~~~~gvdl~~L  260 (419)
T 1gtm_A          190 TARGASYTIREAAKVL---------GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEV  260 (419)
T ss_dssp             HHHHHHHHHHHHHHHT---------TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHH
T ss_pred             hhhHHHHHHHHHHHHh---------CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccccCccCCCHHHH
Confidence            3567777777766522         356 899999999999999999999999 99988877543           4555


Q ss_pred             HHHHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHH-HHHH
Q 012866          340 KSLASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL-LKDA  411 (454)
Q Consensus       340 ~~la~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~l-l~~A  411 (454)
                      .++++..+.-       .++-+++..  . +.|++|||.--+..   +...+  +.|+ ...+....-.|. |+- -..-
T Consensus       261 ~~~~d~~~~l~~l~~t~~i~~~~l~~--m-k~dilIn~ArG~~V---de~a~--~aL~-~~~I~~aAneP~-t~~a~~ll  330 (419)
T 1gtm_A          261 LKWKNEHGSVKDFPGATNITNEELLE--L-EVDVLAPAAIEEVI---TKKNA--DNIK-AKIVAEVANGPV-TPEADEIL  330 (419)
T ss_dssp             HHHHHHHSSSTTCTTSEEECHHHHHH--S-CCSEEEECSCSCCB---CTTGG--GGCC-CSEEECCSSSCB-CHHHHHHH
T ss_pred             HHHHHhcCEeecCccCeeeCHHHHHh--C-CCCEEEECCCcccC---CHHHH--HHhc-CCEEEEeeCCCC-CcchHHHH
Confidence            5554432210       011112222  2 35999999853332   22221  3343 345666664453 432 2334


Q ss_pred             HHCCCceeccH
Q 012866          412 EAAGAIIVSGV  422 (454)
Q Consensus       412 ~~~G~~~~~Gl  422 (454)
                      +..|+.+.+..
T Consensus       331 ~~~~V~itPhi  341 (419)
T 1gtm_A          331 FEKGILQIPDF  341 (419)
T ss_dssp             HHTTCEEECHH
T ss_pred             hcCCEEEECch
Confidence            46788877766

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=96.57  E-value=0.0042  Score=58.79  Aligned_cols=48  Identities=25%  Similarity=0.473  Sum_probs=42.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         9 ~~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   57 (267)
T 1iy8_A            9 TRFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   57 (267)
T ss_dssp             -CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578899999996 69999999999999999999999999888776655

>4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A*

Probab=96.57  E-value=0.0026  Score=60.50  Aligned_cols=42  Identities=19%  Similarity=0.328  Sum_probs=37.2

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAK  340 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~  340 (454)
                      .+++||.++|.|++ |+|++++..|++.|++|.+++|+.++.+
T Consensus         3 ~~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~~   45 (258)
T 4gkb_A            3 LNLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDGA   45 (258)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccHH
Confidence            45889999999975 9999999999999999999999876544

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.56  E-value=0.0021  Score=63.20  Aligned_cols=110  Identities=13%  Similarity=0.148  Sum_probs=75.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCC---Ce-EEEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRG---AR-VVIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G---~~-v~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ++.|||+|.+|+..+.+|...+   ++ +.|++|+.+++++++++++..  +.+++++-+  -.+.|+|+.|||..... 
T Consensus         4 rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~vD~V~i~tp~~~H~-   80 (334)
T 3ohs_X            4 RWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAK--DPNVEVAYVGTQHPQHK-   80 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHH--CTTCCEEEECCCGGGHH-
T ss_pred             EEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEECCCcHHHH-
Confidence            7899999999999999888764   33 678999999999999999863  234444422  24689999999865431 


Q ss_pred             CCCCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHHH
Q 012866          379 TDRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~m  424 (454)
                          .+....+..+. ++++   +|.-      -.+.+.|+++|..+.-|..+
T Consensus        81 ----~~~~~al~~GkhVl~E---KP~a~~~~e~~~l~~~a~~~~~~~~v~~~~  126 (334)
T 3ohs_X           81 ----AAVMLCLAAGKAVLCE---KPMGVNAAEVREMVTEARSRGLFLMEAIWT  126 (334)
T ss_dssp             ----HHHHHHHHTTCEEEEE---SSSSSSHHHHHHHHHHHHHTTCCEEEECGG
T ss_pred             ----HHHHHHHhcCCEEEEE---CCCCCCHHHHHHHHHHHHHhCCEEEEEEhH
Confidence                12233455544 4444   5542      34677888889877666543

>1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G

Probab=96.56  E-value=0.0024  Score=59.27  Aligned_cols=44  Identities=23%  Similarity=0.511  Sum_probs=37.7

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEE-EeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVI-FDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i-~nRt~~~a~~la~~~  346 (454)
                      +|+++|.|+ ||.|++++..|.+.|++|++ ..|+.++.+++.+++
T Consensus         1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~~   46 (244)
T 1edo_A            1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQI   46 (244)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            478999985 69999999999999999888 589998888776654

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=96.56  E-value=0.0044  Score=58.07  Aligned_cols=47  Identities=30%  Similarity=0.404  Sum_probs=41.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus        10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l   57 (260)
T 3awd_A           10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMATKAVEDL   57 (260)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            467899999996 79999999999999999999999998887776655

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.56  E-value=0.0056  Score=60.22  Aligned_cols=74  Identities=23%  Similarity=0.244  Sum_probs=53.6

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------C-ccc-cccccccCCCCccEEEECC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG-------A-ARP-FEDILNFQPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~-------~-~~~-~~~l~~~~~~~~divInat  371 (454)
                      +..++.|+|+|.+|.++++.|+..|. +|++++++.++++..+.++..       . .+. ..+. + .+.++|+||.|.
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~-a~~~aDiVIiaa   83 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-A-AIEGADVVIVTA   83 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-G-GGTTCSEEEECC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-H-HHCCCCEEEEcc
Confidence            45689999999999999999999998 999999999887755443321       1 111 1233 2 457899999998


Q ss_pred             CCCCCC
Q 012866          372 PLGMHP  377 (454)
Q Consensus       372 ~~g~~p  377 (454)
                      +....|
T Consensus        84 g~p~k~   89 (324)
T 3gvi_A           84 GVPRKP   89 (324)
T ss_dssp             SCCCC-
T ss_pred             CcCCCC
Confidence            654444

>3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum}

Probab=96.56  E-value=0.0022  Score=60.45  Aligned_cols=44  Identities=16%  Similarity=0.318  Sum_probs=38.8

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH--HHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER--AKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~--a~~la~~~  346 (454)
                      +|+++|.|+ ||+|++++..|++.|++|+++.|+.++  ++++++++
T Consensus         2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~   48 (258)
T 3a28_C            2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEEQAAETIKLI   48 (258)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHH
Confidence            578999996 699999999999999999999999887  77777665

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.56  E-value=0.0068  Score=62.39  Aligned_cols=38  Identities=21%  Similarity=0.311  Sum_probs=35.1

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS  341 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~  341 (454)
                      ++|.|||+|-||.+++..|++.|.+|++++|+++++.+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~   92 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQ   92 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHH
Confidence            68999999999999999999999999999999996543

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=96.55  E-value=0.0033  Score=59.87  Aligned_cols=48  Identities=27%  Similarity=0.386  Sum_probs=43.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|.+||.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus        24 ~~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   72 (270)
T 3ftp_A           24 KTLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGAEGIGAAF   72 (270)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578999999996 69999999999999999999999999988887765

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.55  E-value=0.027  Score=57.04  Aligned_cols=132  Identities=20%  Similarity=0.237  Sum_probs=85.7

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCe-EEEEeCC----------HHHHHH
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGAR-VVIFDID----------FERAKS  341 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~-v~i~nRt----------~~~a~~  341 (454)
                      -+.|....++..+.+.         +.++++++|+|-|.|.+|+.++..|.++|++ |.|.+.+          .+...+
T Consensus       200 Tg~Gv~~~~~~~~~~~---------g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~  270 (424)
T 3k92_A          200 TAQGVTICIEEAVKKK---------GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLD  270 (424)
T ss_dssp             HHHHHHHHHHHHHHHT---------TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc---------CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHH
Confidence            4667777777766522         3568999999999999999999999999997 4688877          666666


Q ss_pred             HHHHhcC------CccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCH-HHHHHHHC
Q 012866          342 LASDVMG------AARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTR-LLKDAEAA  414 (454)
Q Consensus       342 la~~~~~------~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~-ll~~A~~~  414 (454)
                      +.++.+.      ..++-+++-   -.++||+|-|..-+....   ..  ...+ ...+|+.-.-.|- |+ .-+.-+++
T Consensus       271 ~~~~~g~i~~~~a~~~~~~~i~---~~~~DIliPcA~~n~I~~---~~--a~~l-~ak~V~EgAN~p~-t~eA~~iL~~r  340 (424)
T 3k92_A          271 KRDSFGMVTNLFTDVITNEELL---EKDCDILVPAAISNQITA---KN--AHNI-QASIVVERANGPT-TIDATKILNER  340 (424)
T ss_dssp             HCCSSSCCGGGCSCCBCHHHHH---HSCCSEEEECSCSSCBCT---TT--GGGC-CCSEEECCSSSCB-CHHHHHHHHHT
T ss_pred             HHHHhCCCCCCCcEEecCccce---eccccEEeecCcccccCh---hh--Hhhc-CceEEEcCCCCCC-CHHHHHHHHHC
Confidence            5544331      111112221   135899998876443211   11  1123 5578999998885 54 33444568


Q ss_pred             CCceeccHH
Q 012866          415 GAIIVSGVE  423 (454)
Q Consensus       415 G~~~~~Gl~  423 (454)
                      |+.++++.-
T Consensus       341 GI~~~PD~~  349 (424)
T 3k92_A          341 GVLLVPDIL  349 (424)
T ss_dssp             TCEEECHHH
T ss_pred             CCEEECchH
Confidence            987776543

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.54  E-value=0.007  Score=59.43  Aligned_cols=73  Identities=25%  Similarity=0.316  Sum_probs=54.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC------cccc---ccccccCCCCccEEEECCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA------ARPF---EDILNFQPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~------~~~~---~~l~~~~~~~~divInat~  372 (454)
                      ..++.|+|+|.+|.++++.|+..|. +|.+++++.++++..+.++...      ...+   .+. + ...++|+||.+.+
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~-~-a~~~aDvVIi~ag   82 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDY-K-DLENSDVVIVTAG   82 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-G-GGTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCH-H-HHCCCCEEEEcCC
Confidence            4689999999999999999999888 9999999999887666555421      1111   222 2 4578999999986


Q ss_pred             CCCCC
Q 012866          373 LGMHP  377 (454)
Q Consensus       373 ~g~~p  377 (454)
                      ....|
T Consensus        83 ~p~k~   87 (321)
T 3p7m_A           83 VPRKP   87 (321)
T ss_dssp             CCCCT
T ss_pred             cCCCC
Confidence            54444

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=96.54  E-value=0.0038  Score=59.00  Aligned_cols=75  Identities=31%  Similarity=0.486  Sum_probs=55.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CCC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QPE  362 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  362 (454)
                      .+++|++||.|+ ||.|++++..|++.|++|++++|+.++++++.+++..   ..    .++.+   +..+      ...
T Consensus        26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            467899999996 7999999999999999999999999999888777631   11    22222   1110      113


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|+|||+...+
T Consensus       106 ~id~lv~~Ag~~  117 (262)
T 3rkr_A          106 RCDVLVNNAGVG  117 (262)
T ss_dssp             CCSEEEECCCCC
T ss_pred             CCCEEEECCCcc
Confidence            579999988763

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.53  E-value=0.0067  Score=59.82  Aligned_cols=75  Identities=12%  Similarity=0.152  Sum_probs=55.5

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc--------cccccccccCCCCccEEEEC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--------RPFEDILNFQPEKGAILANA  370 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~~~~~~divIna  370 (454)
                      ...+++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++....        ....+.+  ...++|+||.|
T Consensus        17 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~--~~~~aDiVvi~   94 (331)
T 4aj2_A           17 VPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS--VTANSKLVIIT   94 (331)
T ss_dssp             CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG--GGTTEEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH--HhCCCCEEEEc
Confidence            346799999999999999999999886  89999999999988776664210        1112232  35789999998


Q ss_pred             CCCCCCC
Q 012866          371 TPLGMHP  377 (454)
Q Consensus       371 t~~g~~p  377 (454)
                      ....-.|
T Consensus        95 aG~~~kp  101 (331)
T 4aj2_A           95 AGARQQE  101 (331)
T ss_dssp             CSCCCCT
T ss_pred             cCCCCCC
Confidence            6543333

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=96.53  E-value=0.0041  Score=59.65  Aligned_cols=48  Identities=21%  Similarity=0.347  Sum_probs=42.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+.+|.+||.|+ ||+|++++..|++.|++|.+++|+.++++++++++.
T Consensus        25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~   73 (283)
T 3v8b_A           25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEVEEVADEIV   73 (283)
T ss_dssp             --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999996 699999999999999999999999999999988874

>1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A*

Probab=96.53  E-value=0.0074  Score=56.47  Aligned_cols=46  Identities=22%  Similarity=0.229  Sum_probs=37.8

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCe-EEEEeCCH--HHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGAR-VVIFDIDF--ERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~-v~i~nRt~--~~a~~la~~~  346 (454)
                      +++|+++|+|+ ||+|++++..|++.|++ |++++|+.  +..+++.+..
T Consensus         3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~~~~~~l~~~~   52 (254)
T 1sby_A            3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALAELKAIN   52 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchHHHHHHHHHhC
Confidence            56899999995 69999999999999995 99999986  4556665543

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.53  E-value=0.0034  Score=64.26  Aligned_cols=112  Identities=15%  Similarity=0.202  Sum_probs=73.9

Q ss_pred             ceEEEEccchhHH-HHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCCc---ccccccccc-CCCCccEEEECCCCCCC
Q 012866          304 RMFVLAGAGGAGR-ALAFGAKSR-GAR-VVIFDIDFERAKSLASDVMGAA---RPFEDILNF-QPEKGAILANATPLGMH  376 (454)
Q Consensus       304 k~vlViGaGG~ar-ai~~~L~~~-G~~-v~i~nRt~~~a~~la~~~~~~~---~~~~~l~~~-~~~~~divInat~~g~~  376 (454)
                      -++.|||+|.+|+ ..+.+|.+. +++ +.|++|+.+++++++++++...   ..+.++.++ .-.+.|+|+.|||....
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence            4899999999997 888888776 456 5799999999999999987641   112333331 12468999999986432


Q ss_pred             CCCCCCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHH
Q 012866          377 PNTDRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~  423 (454)
                      .     .+-...+..+. ++++   +|.-      -.+.+.|++.|..+.-|..
T Consensus       164 ~-----~~~~~al~aGk~Vl~E---KPla~~~~e~~~l~~~a~~~g~~~~v~~~  209 (433)
T 1h6d_A          164 A-----EFAIRAFKAGKHVMCE---KPMATSVADCQRMIDAAKAANKKLMIGYR  209 (433)
T ss_dssp             H-----HHHHHHHHTTCEEEEC---SSCCSSHHHHHHHHHHHHHHTCCEEECCG
T ss_pred             H-----HHHHHHHHCCCcEEEc---CCCCCCHHHHHHHHHHHHHhCCeEEEEec
Confidence            1     12233455554 4443   4432      2566777888887766544

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.53  E-value=0.0015  Score=65.43  Aligned_cols=69  Identities=13%  Similarity=0.111  Sum_probs=49.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCHH-----HHHHHHHHhc------C-----CccccccccccC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG-------ARVVIFDIDFE-----RAKSLASDVM------G-----AARPFEDILNFQ  360 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G-------~~v~i~nRt~~-----~a~~la~~~~------~-----~~~~~~~l~~~~  360 (454)
                      .++.|||+|.+|.+++..|++.|       .+|++++|+.+     +++.+.+.-.      .     ......+..+ .
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~e-a  100 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLAS-V  100 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHH-H
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHH-H
Confidence            47999999999999999999989       89999999988     8888765320      0     0000112222 2


Q ss_pred             CCCccEEEECCCC
Q 012866          361 PEKGAILANATPL  373 (454)
Q Consensus       361 ~~~~divInat~~  373 (454)
                      ..++|+||-|+|.
T Consensus       101 ~~~aDvVilav~~  113 (375)
T 1yj8_A          101 INDADLLIFIVPC  113 (375)
T ss_dssp             HTTCSEEEECCCH
T ss_pred             HcCCCEEEEcCCH
Confidence            3568999988874

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.52  E-value=0.00083  Score=66.02  Aligned_cols=109  Identities=19%  Similarity=0.194  Sum_probs=66.9

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC-Ce-EEEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG-AR-VVIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G-~~-v~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      -++.|||+|.+|+..+.+|.+.+ ++ +.|++|+.+++++++++++..  ..+++++-+  -.+.|+|+.|||.....  
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~--   81 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLA--DESIDVIYVATINQDHY--   81 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHT--CTTCCEEEECSCGGGHH--
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEECCCcHHHH--
Confidence            57999999999999999988764 45 558999999999999988753  223444322  24689999999864321  


Q ss_pred             CCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceecc
Q 012866          380 DRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSG  421 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~G  421 (454)
                         .+....+..+.-|+  +=+|.-      -.+.+.|+++|..+..|
T Consensus        82 ---~~~~~al~aGk~Vl--~EKP~a~~~~e~~~l~~~a~~~~~~~~v~  124 (329)
T 3evn_A           82 ---KVAKAALLAGKHVL--VEKPFTLTYDQANELFALAESCNLFLMEA  124 (329)
T ss_dssp             ---HHHHHHHHTTCEEE--EESSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ---HHHHHHHHCCCeEE--EccCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence               12223344443332  224431      23556666677655444

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.51  E-value=0.0029  Score=65.07  Aligned_cols=101  Identities=20%  Similarity=0.160  Sum_probs=65.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----------------ccc-ccccccCCCCccE
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----------------RPF-EDILNFQPEKGAI  366 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----------------~~~-~~l~~~~~~~~di  366 (454)
                      -++.|||+|-+|.+++..|++.|.+|++++|++++.+++.+......                +.+ .++.+ .+.++|+
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~e-a~~~aDv   87 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAE-GVKDADA   87 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHH-HHTTCSE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHH-HHhcCCE
Confidence            47899999999999999999999999999999999998865311100                001 12222 3467899


Q ss_pred             EEECCCCCCCC-CC--CCCCCCh------hcccCCcEEEEEecCCCCC
Q 012866          367 LANATPLGMHP-NT--DRVPVSE------ETLRDYQLVFDAVYTPRKT  405 (454)
Q Consensus       367 vInat~~g~~p-~~--~~~~i~~------~~l~~~~~v~D~~y~P~~T  405 (454)
                      +|-|.|..... +.  |-..+..      ..++++.+|++.+-.|..|
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt  135 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPVGT  135 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTH
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchH
Confidence            99995532211 10  0000111      2356788888887665543

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.50  E-value=0.0029  Score=63.02  Aligned_cols=70  Identities=13%  Similarity=0.088  Sum_probs=52.0

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH---HHHHHHHHHhcCCcccccc-cccc---CCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF---ERAKSLASDVMGAARPFED-ILNF---QPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~---~~a~~la~~~~~~~~~~~~-l~~~---~~~~~divInat~~  373 (454)
                      ++++|+|+|+|++|.+++..++..|++|++++|+.   ++. +++++++...++ .+ +.+.   ....+|++|++++.
T Consensus       180 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~-~~~~~~ga~~v~-~~~~~~~~~~~~~~~d~vid~~g~  256 (366)
T 2cdc_A          180 NCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQ-TVIEETKTNYYN-SSNGYDKLKDSVGKFDVIIDATGA  256 (366)
T ss_dssp             TTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHH-HHHHHHTCEEEE-CTTCSHHHHHHHCCEEEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHH-HHHHHhCCceec-hHHHHHHHHHhCCCCCEEEECCCC
Confidence            48999999999999999999999999999999998   776 456677754332 11 1110   01358999999864

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.50  E-value=0.0056  Score=59.56  Aligned_cols=67  Identities=13%  Similarity=0.014  Sum_probs=49.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccc--------cccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP--------FEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~--------~~~l~~~~~~~~divInat~~  373 (454)
                      .+++|||+|.+|.+++..|. .|.+|++++|+.++++++.+. +.....        ...-.+ ....+|+||-|++.
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~-G~~~~~~~~~~~~~~~~~~~-~~~~~D~vilavK~   77 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSE-GIRLYKGGEEFRADCSADTS-INSDFDLLVVTVKQ   77 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH-CEEEEETTEEEEECCEEESS-CCSCCSEEEECCCG
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhC-CceEecCCCeeccccccccc-ccCCCCEEEEEeCH
Confidence            47999999999999999999 888999999999988888653 321100        000011 24568999998875

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=96.50  E-value=0.005  Score=58.15  Aligned_cols=47  Identities=23%  Similarity=0.470  Sum_probs=42.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (262)
T 1zem_A            4 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV   51 (262)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            367899999996 69999999999999999999999999988887766

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=96.49  E-value=0.0025  Score=60.97  Aligned_cols=47  Identities=26%  Similarity=0.462  Sum_probs=42.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus        30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~   77 (275)
T 4imr_A           30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRI   77 (275)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHH
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHH
Confidence            478999999996 69999999999999999999999999888887766

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=96.48  E-value=0.0031  Score=60.97  Aligned_cols=49  Identities=22%  Similarity=0.297  Sum_probs=44.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++.
T Consensus        37 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~   86 (293)
T 3rih_A           37 FDLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPRELSSVTAELG   86 (293)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHT
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            4578999999996 699999999999999999999999999998888774

>2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2

Probab=96.48  E-value=0.0044  Score=58.75  Aligned_cols=74  Identities=20%  Similarity=0.209  Sum_probs=54.7

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++....    .++.+   +..+      .....|+
T Consensus         4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~iD~   83 (263)
T 2a4k_A            4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   83 (263)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcCceEEEEcCCCCHHHHHHHHHHHHHHcCCCcE
Confidence            56899999996 699999999999999999999999999988887764321    12221   1110      1135699


Q ss_pred             EEECCCCC
Q 012866          367 LANATPLG  374 (454)
Q Consensus       367 vInat~~g  374 (454)
                      +||+....
T Consensus        84 lvnnAg~~   91 (263)
T 2a4k_A           84 VAHFAGVA   91 (263)
T ss_dssp             EEEGGGGT
T ss_pred             EEECCCCC
Confidence            99987543

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.48  E-value=0.0059  Score=59.80  Aligned_cols=70  Identities=19%  Similarity=0.186  Sum_probs=52.2

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc---ccc----ccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE---DIL----NFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~---~l~----~~~~~~~divInat~  372 (454)
                      .+++++|+|+ ||+|++++..++..|++|++++|+.++.+.+ ++++... ++..   ++.    +......|++||++.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~-~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  223 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL-KQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  223 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH-HHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH-HhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            5789999997 9999999999999999999999999887766 6666432 2221   111    101135899999986

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.48  E-value=0.00061  Score=62.58  Aligned_cols=70  Identities=23%  Similarity=0.178  Sum_probs=48.1

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccc---cccccCCCCccEEEECCCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE---DILNFQPEKGAILANATPLG  374 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~---~l~~~~~~~~divInat~~g  374 (454)
                      ++++|+|+ |+.|++++..|.+.|.+|+++.|+.++.+.+...+.....++.   ++.+ ...+.|+||++.+..
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~d~vi~~a~~~   78 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCE-VCKGADAVISAFNPG   78 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHH-HHTTCSEEEECCCC-
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHH-HhcCCCEEEEeCcCC
Confidence            68999995 8999999999999999999999998775433211111111222   2222 345789999987543

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=96.47  E-value=0.0044  Score=59.24  Aligned_cols=48  Identities=19%  Similarity=0.158  Sum_probs=40.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      -+++|++||.|+ ||+|++++..|++.|++|++++|+.++++++++++.
T Consensus        21 m~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~   69 (279)
T 3sju_A           21 MSRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNVSAAVDGLR   69 (279)
T ss_dssp             ----CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            356899999996 699999999999999999999999999998887764

>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*

Probab=96.47  E-value=0.0051  Score=57.50  Aligned_cols=45  Identities=22%  Similarity=0.398  Sum_probs=38.0

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDV  346 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~  346 (454)
                      .+|+++|.|+ ||+|++++..|++.|++|.+..| +.++++++++++
T Consensus         3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~   49 (246)
T 3osu_A            3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEEI   49 (246)
T ss_dssp             CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            4689999996 69999999999999999887765 678888877665

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=96.47  E-value=0.0038  Score=59.91  Aligned_cols=48  Identities=21%  Similarity=0.231  Sum_probs=41.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|+++.|+.++++++++++.
T Consensus         9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~   57 (311)
T 3o26_A            9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLK   57 (311)
T ss_dssp             ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHH
Confidence            467899999996 699999999999999999999999999888877763

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.47  E-value=0.0033  Score=63.98  Aligned_cols=113  Identities=19%  Similarity=0.188  Sum_probs=74.8

Q ss_pred             ceEEEEccch---hHHHHHHHHHHCC-CeEE--EEeCCHHHHHHHHHHhcCC----ccccccccccC---CCCccEEEEC
Q 012866          304 RMFVLAGAGG---AGRALAFGAKSRG-ARVV--IFDIDFERAKSLASDVMGA----ARPFEDILNFQ---PEKGAILANA  370 (454)
Q Consensus       304 k~vlViGaGG---~arai~~~L~~~G-~~v~--i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~---~~~~divIna  370 (454)
                      -++.|||+|.   +|+.-+.++...+ ++|+  |++|+++++++++++++..    +.+++++-+..   ..+.|+|+.|
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~  117 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIV  117 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEEC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEEC
Confidence            4899999998   9998888888776 4654  7899999999999999863    12344432200   0358999999


Q ss_pred             CCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHH
Q 012866          371 TPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       371 t~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~  423 (454)
                      ||.....     ++-...+..+.-|+  +=+|.-      -.+.+.|++.|..+.-|..
T Consensus       118 tp~~~H~-----~~~~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~  169 (417)
T 3v5n_A          118 TPNHVHY-----AAAKEFLKRGIHVI--CDKPLTSTLADAKKLKKAADESDALFVLTHN  169 (417)
T ss_dssp             SCTTSHH-----HHHHHHHTTTCEEE--EESSSCSSHHHHHHHHHHHHHCSSCEEEECG
T ss_pred             CCcHHHH-----HHHHHHHhCCCeEE--EECCCcCCHHHHHHHHHHHHHcCCEEEEEec
Confidence            9965432     13334555554333  225642      2467788888887666554

>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2

Probab=96.47  E-value=0.0021  Score=60.57  Aligned_cols=44  Identities=18%  Similarity=0.125  Sum_probs=36.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCC---CeEEEEeCCHHHHHHH
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRG---ARVVIFDIDFERAKSL  342 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G---~~v~i~nRt~~~a~~l  342 (454)
                      ..+++++++|+|+ ||.|++++..|++.|   ++|+++.|+.++.+.+
T Consensus        17 ~~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~~~~   64 (267)
T 1sny_A           17 RGSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKEL   64 (267)
T ss_dssp             ---CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHH
T ss_pred             cCCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhhHHH
Confidence            4578899999996 699999999999999   8999999998765544

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.46  E-value=0.0037  Score=61.33  Aligned_cols=71  Identities=21%  Similarity=0.273  Sum_probs=54.3

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc--c----ccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE--D----ILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~--~----l~~~~~~~~divInat~  372 (454)
                      .+++|+|+|+ ||+|.+++..++..|++|+++.|+.++.+.++++++... ++..  +    +.+.....+|++||++.
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG  227 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence            5789999998 999999999999999999999999999887768887542 2221  1    11111246899999886

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=96.46  E-value=0.0065  Score=57.98  Aligned_cols=75  Identities=15%  Similarity=0.198  Sum_probs=53.0

Q ss_pred             CCCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCH--HHHHHHHHHhcCC-c--ccccc---cccc------CCC
Q 012866          300 PLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDF--ERAKSLASDVMGA-A--RPFED---ILNF------QPE  362 (454)
Q Consensus       300 ~~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~--~~a~~la~~~~~~-~--~~~~~---l~~~------~~~  362 (454)
                      .+++|+++|.|+   +|+|++++..|++.|++|+++.|+.  +.++++.+..+.. .  .++.+   +.++      ...
T Consensus        23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g  102 (280)
T 3nrc_A           23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEFNPAAVLPCDVISDQEIKDLFVELGKVWD  102 (280)
T ss_dssp             TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGGCCSEEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred             ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhcCCceEEEeecCCHHHHHHHHHHHHHHcC
Confidence            467899999995   3699999999999999999999987  6777776665431 1  12221   1110      124


Q ss_pred             CccEEEECCCCC
Q 012866          363 KGAILANATPLG  374 (454)
Q Consensus       363 ~~divInat~~g  374 (454)
                      ..|+|||+....
T Consensus       103 ~id~li~nAg~~  114 (280)
T 3nrc_A          103 GLDAIVHSIAFA  114 (280)
T ss_dssp             SCCEEEECCCCC
T ss_pred             CCCEEEECCccC
Confidence            679999987643

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=96.46  E-value=0.0061  Score=57.86  Aligned_cols=76  Identities=20%  Similarity=0.315  Sum_probs=55.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QP  361 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~  361 (454)
                      ..+.+|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++.   ...    .++.+   +..+      ..
T Consensus        27 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           27 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEI  106 (272)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcCCeEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            4578899999996 699999999999999999999999998888776652   211    12221   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|+|||+....
T Consensus       107 g~iD~li~~Ag~~  119 (272)
T 1yb1_A          107 GDVSILVNNAGVV  119 (272)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCcEEEECCCcC
Confidence            3689999988653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=96.45  E-value=0.00094  Score=64.22  Aligned_cols=110  Identities=16%  Similarity=0.070  Sum_probs=68.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC-CCCCC-
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH-PNTDR-  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~-p~~~~-  381 (454)
                      .++.|||+|.+|++++..|.+.|++|++++ +.++++++.+. +...  ..++.+ .+.++|+||.|+|.... ...-. 
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~-g~~~--~~~~~~-~~~~~D~vi~~vp~~~~~~~v~~~   78 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSL-GAVN--VETARQ-VTEFADIIFIMVPDTPQVEDVLFG   78 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTT-TCBC--CSSHHH-HHHTCSEEEECCSSHHHHHHHHHS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHc-CCcc--cCCHHH-HHhcCCEEEEECCCHHHHHHHHhC
Confidence            479999999999999999999999999999 88888877654 3221  122222 23468999999975321 00000 


Q ss_pred             -CCCChhcccCCcEEEEEecCCC-CC-HHHHHHHHCCCcee
Q 012866          382 -VPVSEETLRDYQLVFDAVYTPR-KT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       382 -~~i~~~~l~~~~~v~D~~y~P~-~T-~ll~~A~~~G~~~~  419 (454)
                       ..+ ...+.++.+++|+.-... .+ .+.+.+.++|..++
T Consensus        79 ~~~l-~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~  118 (295)
T 1yb4_A           79 EHGC-AKTSLQGKTIVDMSSISPIETKRFAQRVNEMGADYL  118 (295)
T ss_dssp             TTSS-TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             chhH-hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEE
Confidence             001 123566788888865432 22 33344455565544

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=96.45  E-value=0.0037  Score=61.02  Aligned_cols=47  Identities=32%  Similarity=0.422  Sum_probs=39.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID------------FERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt------------~~~a~~la~~~  346 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+            .++++++++.+
T Consensus        43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (317)
T 3oec_A           43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNLDYAQGSPEELKETVRLV  102 (317)
T ss_dssp             TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTCCSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccccccccCHHHHHHHHHHH
Confidence            477899999996 699999999999999999999876            66766665544

>2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2

Probab=96.44  E-value=0.0054  Score=57.96  Aligned_cols=46  Identities=28%  Similarity=0.494  Sum_probs=40.9

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||.|++++..|++.|++|++++|+.++++++.+++
T Consensus         5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l   51 (267)
T 2gdz_A            5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAAL   51 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            56889999996 69999999999999999999999998888776665

>3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2

Probab=96.44  E-value=0.0083  Score=56.48  Aligned_cols=76  Identities=17%  Similarity=0.181  Sum_probs=51.8

Q ss_pred             CCCCCceEEEEcc---chhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcCC-c--ccccc---cccc------C
Q 012866          299 SPLAGRMFVLAGA---GGAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVMGA-A--RPFED---ILNF------Q  360 (454)
Q Consensus       299 ~~~~~k~vlViGa---GG~arai~~~L~~~G~~v~i~nRt~~---~a~~la~~~~~~-~--~~~~~---l~~~------~  360 (454)
                      ..+++|++||.|+   ||.|++++..|++.|++|+++.|+..   .++++.++.+.. .  .++.+   +..+      .
T Consensus        10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   89 (271)
T 3ek2_A           10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTH   89 (271)
T ss_dssp             CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHH
Confidence            5678999999995   59999999999999999999988843   344444544421 1  12221   1110      1


Q ss_pred             CCCccEEEECCCCC
Q 012866          361 PEKGAILANATPLG  374 (454)
Q Consensus       361 ~~~~divInat~~g  374 (454)
                      ....|++||+....
T Consensus        90 ~g~id~lv~nAg~~  103 (271)
T 3ek2_A           90 WDSLDGLVHSIGFA  103 (271)
T ss_dssp             CSCEEEEEECCCCC
T ss_pred             cCCCCEEEECCccC
Confidence            24679999987653

>1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A*

Probab=96.44  E-value=0.006  Score=58.58  Aligned_cols=48  Identities=23%  Similarity=0.397  Sum_probs=42.4

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++++++
T Consensus        22 ~~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l   70 (302)
T 1w6u_A           22 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI   70 (302)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3578899999996 69999999999999999999999999888776655

>3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A

Probab=96.44  E-value=0.0052  Score=57.99  Aligned_cols=75  Identities=21%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             CCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHH-----HHHHHHHhcCCc----ccccc---cccc-----
Q 012866          300 PLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFER-----AKSLASDVMGAA----RPFED---ILNF-----  359 (454)
Q Consensus       300 ~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~-----a~~la~~~~~~~----~~~~~---l~~~-----  359 (454)
                      .+++|+++|.|++   |.|++++..|++.|++|+++.|+.++     .+++.+..+...    .++.+   +..+     
T Consensus        17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~   96 (267)
T 3gdg_A           17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQGAEENVKELEKTYGIKAKAYKCQVDSYESCEKLVKDVV   96 (267)
T ss_dssp             CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSHHHHHHHHHHHHHCCCEECCBCCTTCHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchhHHHHHHHHHHhcCCceeEEecCCCCHHHHHHHHHHHH
Confidence            4789999999975   99999999999999999998887433     334444444321    22222   1110     


Q ss_pred             -CCCCccEEEECCCCC
Q 012866          360 -QPEKGAILANATPLG  374 (454)
Q Consensus       360 -~~~~~divInat~~g  374 (454)
                       .....|++||+....
T Consensus        97 ~~~g~id~li~nAg~~  112 (267)
T 3gdg_A           97 ADFGQIDAFIANAGAT  112 (267)
T ss_dssp             HHTSCCSEEEECCCCC
T ss_pred             HHcCCCCEEEECCCcC
Confidence             124679999987653

>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2

Probab=96.44  E-value=0.0054  Score=58.99  Aligned_cols=48  Identities=31%  Similarity=0.470  Sum_probs=42.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||+|++++..|.+.|++|++++|+.++.+++++++
T Consensus        14 ~~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l   62 (303)
T 1yxm_A           14 GLLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL   62 (303)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            3577899999996 69999999999999999999999999888877665

>2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens}

Probab=96.43  E-value=0.0048  Score=57.94  Aligned_cols=47  Identities=28%  Similarity=0.403  Sum_probs=41.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+++
T Consensus         4 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   51 (264)
T 2pd6_A            4 RLRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQETVRLL   51 (264)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTC
T ss_pred             ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHH
Confidence            367899999996 69999999999999999999999999888877654

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=96.43  E-value=0.005  Score=58.01  Aligned_cols=46  Identities=28%  Similarity=0.491  Sum_probs=41.2

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   49 (260)
T 2qq5_A            3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTLRVVAQEA   49 (260)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56899999996 69999999999999999999999999888887665

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.43  E-value=0.0019  Score=63.32  Aligned_cols=67  Identities=18%  Similarity=0.145  Sum_probs=47.7

Q ss_pred             CceEEEEccchhHHHHHHHHHHCC----CeEEEEeCCHH--HHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDFE--RAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G----~~v~i~nRt~~--~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..++.|||+|.+|.+++..|.+.|    .+|++++|+.+  +++++. +.+....  .+..+ ...++|+||-|++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~-~~G~~~~--~~~~e-~~~~aDvVilav~~   94 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALR-KMGVKLT--PHNKE-TVQHSDVLFLAVKP   94 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHH-HHTCEEE--SCHHH-HHHHCSEEEECSCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHH-HcCCEEe--CChHH-HhccCCEEEEEeCH
Confidence            357999999999999999999999    68999999986  777775 3443221  11111 12346777777763

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.42  E-value=0.0078  Score=61.47  Aligned_cols=104  Identities=17%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc----------c--cccCCCCccEE
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED----------I--LNFQPEKGAIL  367 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~----------l--~~~~~~~~div  367 (454)
                      -+|.+..|||.|-+|..++..|++.|++|++++|++++.+++.+.-.... ..+++          +  .. .+.++|++
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~tt-d~~~aDvv   87 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVST-TPEASDVF   87 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES-SCCCCSEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeC-chhhCCEE
Confidence            45789999999999999999999999999999999999999865311100 01111          1  01 24578999


Q ss_pred             EECCCCCCCCCCCCCC-CC------h---hcccCCcEEEEEecCCCCC
Q 012866          368 ANATPLGMHPNTDRVP-VS------E---ETLRDYQLVFDAVYTPRKT  405 (454)
Q Consensus       368 Inat~~g~~p~~~~~~-i~------~---~~l~~~~~v~D~~y~P~~T  405 (454)
                      |-|.|-....+....+ +.      .   ..++++.+|+|.+-.|..|
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgt  135 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKT  135 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTH
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhH
Confidence            9988754321100111 11      0   2356778888888776654

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=96.42  E-value=0.0011  Score=63.28  Aligned_cols=36  Identities=22%  Similarity=0.243  Sum_probs=33.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ++++||+|+|..|++++..|.+.|.+|+++.|+.++
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence            468999999999999999999999999999998665

>1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A

Probab=96.42  E-value=0.0055  Score=57.72  Aligned_cols=48  Identities=17%  Similarity=0.133  Sum_probs=42.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+++
T Consensus        10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   58 (266)
T 1xq1_A           10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKW   58 (266)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            4578899999986 69999999999999999999999999888877665

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=96.41  E-value=0.0028  Score=59.60  Aligned_cols=37  Identities=24%  Similarity=0.376  Sum_probs=33.5

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|++++|+.+
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            46789999996 79999999999999999999999875

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=96.41  E-value=0.0045  Score=59.23  Aligned_cols=47  Identities=30%  Similarity=0.467  Sum_probs=41.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+.+++++|.|+ ||+|++++..|.+.|++|++++|+.++.+++++++
T Consensus        25 ~~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~   72 (286)
T 1xu9_A           25 MLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHC   72 (286)
T ss_dssp             GGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             hcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            367899999997 79999999999999999999999999888877654

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=96.40  E-value=0.0057  Score=59.76  Aligned_cols=47  Identities=26%  Similarity=0.399  Sum_probs=42.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++.+|++||.|+ ||+|++++..|++.|++|+++.|+.++++++.+.+
T Consensus         5 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l   52 (319)
T 3ioy_A            5 DFAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATL   52 (319)
T ss_dssp             CCTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            467899999996 69999999999999999999999999988887765

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.39  E-value=0.0064  Score=59.55  Aligned_cols=74  Identities=22%  Similarity=0.253  Sum_probs=53.3

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC--HHHHHHHHHHhcCC------c--cc-cccccccCCCCccEEEE
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID--FERAKSLASDVMGA------A--RP-FEDILNFQPEKGAILAN  369 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt--~~~a~~la~~~~~~------~--~~-~~~l~~~~~~~~divIn  369 (454)
                      +.+++.|+|+|.+|.++++.|+..|. +|++++++  .++++..+.++...      .  +. ..+.+  ..+++|+||.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~--a~~~aDvVIi   84 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYA--DTADSDVVVI   84 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGG--GGTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHH--HhCCCCEEEE
Confidence            45789999999999999999999999 99999999  66766665444211      0  11 11222  3578999999


Q ss_pred             CCCCCCCC
Q 012866          370 ATPLGMHP  377 (454)
Q Consensus       370 at~~g~~p  377 (454)
                      |.+....|
T Consensus        85 aag~p~kp   92 (315)
T 3tl2_A           85 TAGIARKP   92 (315)
T ss_dssp             CCSCCCCT
T ss_pred             eCCCCCCC
Confidence            87654444

>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens}

Probab=96.39  E-value=0.0049  Score=61.12  Aligned_cols=40  Identities=35%  Similarity=0.503  Sum_probs=36.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|+++.|+.++
T Consensus        41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~   81 (346)
T 3kvo_A           41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQP   81 (346)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred             CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhh
Confidence            4678999999996 699999999999999999999998764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=96.38  E-value=0.0031  Score=60.47  Aligned_cols=70  Identities=11%  Similarity=0.166  Sum_probs=48.8

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-------HHHHHHHHH--hcCCc--ccccc---ccccCCCCccEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-------ERAKSLASD--VMGAA--RPFED---ILNFQPEKGAIL  367 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-------~~a~~la~~--~~~~~--~~~~~---l~~~~~~~~div  367 (454)
                      +++++|+|+ |+.|++++.+|.+.|.+|+++.|+.       ++++.+.+.  -+...  .++.+   +.. .+.+.|+|
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~-~~~~~d~v   80 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVK-AIKQVDIV   80 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHTTCSEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHH-HHhCCCEE
Confidence            467999996 8999999999999999999999986       666554321  12221  22322   322 34578999


Q ss_pred             EECCCC
Q 012866          368 ANATPL  373 (454)
Q Consensus       368 Inat~~  373 (454)
                      |++.+.
T Consensus        81 i~~a~~   86 (307)
T 2gas_A           81 ICAAGR   86 (307)
T ss_dssp             EECSSS
T ss_pred             EECCcc
Confidence            998764

>1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.37  E-value=0.0019  Score=59.87  Aligned_cols=43  Identities=26%  Similarity=0.297  Sum_probs=37.6

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHH
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRG--ARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G--~~v~i~nRt~~~a~~la~  344 (454)
                      ++|+++|.|+ ||.|++++..|.+.|  ++|+++.|+.++.+++.+
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~   47 (250)
T 1yo6_A            2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKS   47 (250)
T ss_dssp             CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHT
T ss_pred             CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHh
Confidence            3678999996 699999999999999  899999999988777643

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.37  E-value=0.0051  Score=58.70  Aligned_cols=46  Identities=24%  Similarity=0.361  Sum_probs=41.5

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      +.+|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus         4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~   50 (280)
T 1xkq_A            4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQII   50 (280)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            56899999996 69999999999999999999999999988887765

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=96.36  E-value=0.00072  Score=66.03  Aligned_cols=108  Identities=16%  Similarity=0.163  Sum_probs=70.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCCccccccccccC-CCCccEEEECCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GAR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQ-PEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~-v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~-~~~~divInat~~g~~p~~~  380 (454)
                      -++.|||+|.+|+..+.+|.+. +++ +.+++|+.++++++++.  ..  .+.++.+.. ..+.|+|+.|||.....   
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~--~~--~~~~~~~~l~~~~~D~V~i~tp~~~h~---   83 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG--CV--IESDWRSVVSAPEVEAVIIATPPATHA---   83 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT--CE--EESSTHHHHTCTTCCEEEEESCGGGHH---
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh--Cc--ccCCHHHHhhCCCCCEEEEeCChHHHH---
Confidence            5799999999999999999986 555 56999999998876654  11  122332211 14689999999864321   


Q ss_pred             CCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHH
Q 012866          381 RVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       381 ~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~  423 (454)
                        ++-...++.+. ++++   +|.-      ..+.+.|+++|..+..|..
T Consensus        84 --~~~~~al~~Gk~v~~e---KP~~~~~~~~~~l~~~a~~~g~~~~~~~~  128 (315)
T 3c1a_A           84 --EITLAAIASGKAVLVE---KPLTLDLAEAEAVAAAAKATGVMVWVEHT  128 (315)
T ss_dssp             --HHHHHHHHTTCEEEEE---SSSCSCHHHHHHHHHHHHHHCCCEEEECG
T ss_pred             --HHHHHHHHCCCcEEEc---CCCcCCHHHHHHHHHHHHHcCCEEEEeec
Confidence              12234455554 4433   4542      3467778888887766554

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=96.36  E-value=0.0094  Score=57.43  Aligned_cols=75  Identities=20%  Similarity=0.151  Sum_probs=50.4

Q ss_pred             CCCCceEEEEccc-h--hHHHHHHHHHHCCCeEEEEeCCHHHH---HHHHHHhcCC-c--ccccc---cccc------CC
Q 012866          300 PLAGRMFVLAGAG-G--AGRALAFGAKSRGARVVIFDIDFERA---KSLASDVMGA-A--RPFED---ILNF------QP  361 (454)
Q Consensus       300 ~~~~k~vlViGaG-G--~arai~~~L~~~G~~v~i~nRt~~~a---~~la~~~~~~-~--~~~~~---l~~~------~~  361 (454)
                      .+++|++||.|++ +  +|++++..|++.|++|+++.|+.+..   +++.+..+.. .  .++.+   +..+      ..
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~  107 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKW  107 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhc
Confidence            4789999999973 4  99999999999999999999996433   3344444321 1  12221   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus       108 g~iD~lVnnAG~~  120 (293)
T 3grk_A          108 GKLDFLVHAIGFS  120 (293)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCCEEEECCccC
Confidence            4689999987643

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.36  E-value=0.007  Score=62.48  Aligned_cols=42  Identities=21%  Similarity=0.250  Sum_probs=37.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~  344 (454)
                      -++|.|||+|-||.+++..|+..|++|++++|+.++++...+
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~   78 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKK   78 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH
Confidence            368999999999999999999999999999999988776543

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.35  E-value=0.0016  Score=59.47  Aligned_cols=68  Identities=15%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             eEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc----ccccccCCCCccEEEECCCCC
Q 012866          305 MFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF----EDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       305 ~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~----~~l~~~~~~~~divInat~~g  374 (454)
                      +++|+| +|+.|++++..|.+.|++|+++.|+.++.+++ ..+.....++    +++.+ ...+.|+||++....
T Consensus         2 ~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~-~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAK-QLHGMDAIINVSGSG   74 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHT-TTTTCSEEEECCCCT
T ss_pred             eEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHH-HHcCCCEEEECCcCC
Confidence            689999 58999999999999999999999998775443 1111001122    23333 456799999988653

>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum}

Probab=96.34  E-value=0.0059  Score=56.91  Aligned_cols=73  Identities=18%  Similarity=0.154  Sum_probs=47.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc------cccc--CCCCccEEEE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED------ILNF--QPEKGAILAN  369 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~------l~~~--~~~~~divIn  369 (454)
                      +++|+++|.|+ ||.|++++..|++ |.+|++++|+.++.+++++..+...  .++.+      +.+.  .....|++||
T Consensus         3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~id~lv~   81 (245)
T 3e9n_A            3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEHLAALAEIEGVEPIESDIVKEVLEEGGVDKLKNLDHVDTLVH   81 (245)
T ss_dssp             ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHHTSTTEEEEECCHHHHHHTSSSCGGGTTCSCCSEEEE
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHhhcCCcceecccchHHHHHHHHHHHHhcCCCCEEEE
Confidence            46789999996 6999999999987 8899999999999888765211111  11111      1110  1246899999


Q ss_pred             CCCCC
Q 012866          370 ATPLG  374 (454)
Q Consensus       370 at~~g  374 (454)
                      +....
T Consensus        82 ~Ag~~   86 (245)
T 3e9n_A           82 AAAVA   86 (245)
T ss_dssp             CC---
T ss_pred             CCCcC
Confidence            87643

>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}

Probab=96.32  E-value=0.0026  Score=59.90  Aligned_cols=73  Identities=21%  Similarity=0.335  Sum_probs=49.2

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-hcCCcccccc---cccc--CCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASD-VMGAARPFED---ILNF--QPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~-~~~~~~~~~~---l~~~--~~~~~divInat~~  373 (454)
                      ++||.++|.|++ |+|++++..|++.|++|.+++|+.++.++.... ......++.+   +++.  ...+.|++||....
T Consensus         9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDiLVNNAGi   88 (242)
T 4b79_A            9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGVHAPRHPRIRREELDITDSQRLQRLFEALPRLDVLVNNAGI   88 (242)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTSTTSCCCTTEEEEECCTTCHHHHHHHHHHCSCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHhhhhcCCeEEEEecCCCHHHHHHHHHhcCCCCEEEECCCC
Confidence            689999999975 999999999999999999999998765432110 0000112211   1110  24568999997754

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=96.32  E-value=0.0021  Score=63.52  Aligned_cols=70  Identities=17%  Similarity=0.255  Sum_probs=50.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCHH-----HHHHHHHHhcC-Cc---------cc-ccccccc
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRG-------ARVVIFDIDFE-----RAKSLASDVMG-AA---------RP-FEDILNF  359 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G-------~~v~i~nRt~~-----~a~~la~~~~~-~~---------~~-~~~l~~~  359 (454)
                      ..++.|||+|.+|.+++..|++.|       .+|++++|+.+     +++.+.+.... ..         +. ..++.+ 
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-   86 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQ-   86 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHH-
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHH-
Confidence            358999999999999999999998       79999999988     88877653110 00         00 112222 


Q ss_pred             CCCCccEEEECCCC
Q 012866          360 QPEKGAILANATPL  373 (454)
Q Consensus       360 ~~~~~divInat~~  373 (454)
                      ...++|+||-|+|.
T Consensus        87 ~~~~aD~Vilav~~  100 (354)
T 1x0v_A           87 AAEDADILIFVVPH  100 (354)
T ss_dssp             HHTTCSEEEECCCG
T ss_pred             HHcCCCEEEEeCCH
Confidence            23568999998875

>1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A*

Probab=96.31  E-value=0.0071  Score=59.19  Aligned_cols=76  Identities=22%  Similarity=0.365  Sum_probs=53.4

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEE---------eCCHHHHHHHHHHhcCC----cccccccc---cc--
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF---------DIDFERAKSLASDVMGA----ARPFEDIL---NF--  359 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~---------nRt~~~a~~la~~~~~~----~~~~~~l~---~~--  359 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++.         .|+.++++++++++...    ..++.+..   .+  
T Consensus         5 ~~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~~~R~~~~~~~~~~~l~~~~~~~~~D~~~~~~~~~~~~   84 (319)
T 1gz6_A            5 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK   84 (319)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCcccccccCCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHH
Confidence            3578899999996 699999999999999999986         45778888777665311    11222211   10  


Q ss_pred             ----CCCCccEEEECCCCC
Q 012866          360 ----QPEKGAILANATPLG  374 (454)
Q Consensus       360 ----~~~~~divInat~~g  374 (454)
                          .....|+|||+....
T Consensus        85 ~~~~~~g~iD~lVnnAG~~  103 (319)
T 1gz6_A           85 TALDTFGRIDVVVNNAGIL  103 (319)
T ss_dssp             HHHHHTSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCCCC
Confidence                124679999987653

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=96.30  E-value=0.0035  Score=62.79  Aligned_cols=110  Identities=15%  Similarity=0.240  Sum_probs=74.9

Q ss_pred             ceEEEEc-cchhHHH-HH----HHHHHCCC-eE----------EEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCc
Q 012866          304 RMFVLAG-AGGAGRA-LA----FGAKSRGA-RV----------VIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKG  364 (454)
Q Consensus       304 k~vlViG-aGG~ara-i~----~~L~~~G~-~v----------~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~  364 (454)
                      -++.||| +|.+|+. .+    .++.+.+. .+          .|++|+.+++++++++++..  +.+++++-+  -.+.
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~i   84 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALA--DKND   84 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHH--CSSC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhc--CCCC
Confidence            4799999 9999997 66    67776553 43          49999999999999999864  234555432  2458


Q ss_pred             cEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccH
Q 012866          365 AILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGV  422 (454)
Q Consensus       365 divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl  422 (454)
                      |+|+.|||.....     .+....++.+.-|+  +=+|.-      -.+++.|+++|..+.-|.
T Consensus        85 D~V~i~tp~~~h~-----~~~~~al~~Gk~V~--~EKP~a~~~~~~~~l~~~a~~~~~~~~v~~  141 (383)
T 3oqb_A           85 TMFFDAATTQARP-----GLLTQAINAGKHVY--CEKPIATNFEEALEVVKLANSKGVKHGTVQ  141 (383)
T ss_dssp             CEEEECSCSSSSH-----HHHHHHHTTTCEEE--ECSCSCSSHHHHHHHHHHHHHTTCCEEECC
T ss_pred             CEEEECCCchHHH-----HHHHHHHHCCCeEE--EcCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence            9999999864431     23345566665555  435652      246778888888755443

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.30  E-value=0.0066  Score=61.71  Aligned_cols=107  Identities=17%  Similarity=0.137  Sum_probs=69.5

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-----ccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-----PFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +.+|+|+|.|..|+.++..|.+.|.+|+++++++++.+.+.+ .+...+     +.+.|....+.++|+||.|++-..  
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~-~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~--   80 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRK-FGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQ--   80 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH-TTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHH--
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh-CCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChH--
Confidence            357999999999999999999999999999999999887754 444332     222243334678999999986310  


Q ss_pred             CCCCCCCCh--hcccCCcEEEEEecCCCCCHHHHHHHHCCCc
Q 012866          378 NTDRVPVSE--ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI  417 (454)
Q Consensus       378 ~~~~~~i~~--~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~  417 (454)
                        ....+-.  ..+.+..-++-.+.++...   ..-++.|+.
T Consensus        81 --~n~~i~~~ar~~~p~~~Iiara~~~~~~---~~L~~~Gad  117 (413)
T 3l9w_A           81 --TNLQLTEMVKEHFPHLQIIARARDVDHY---IRLRQAGVE  117 (413)
T ss_dssp             --HHHHHHHHHHHHCTTCEEEEEESSHHHH---HHHHHTTCS
T ss_pred             --HHHHHHHHHHHhCCCCeEEEEECCHHHH---HHHHHCCCC
Confidence              0000000  1123444555666665443   444567875

>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=96.30  E-value=0.0058  Score=59.05  Aligned_cols=47  Identities=23%  Similarity=0.422  Sum_probs=41.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++++++++++
T Consensus        23 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l   70 (297)
T 1xhl_A           23 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQI   70 (297)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH
Confidence            367899999996 69999999999999999999999999988877665

>1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A*

Probab=96.29  E-value=0.0055  Score=57.64  Aligned_cols=47  Identities=28%  Similarity=0.326  Sum_probs=41.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKS---RGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~---~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++   .|++|++++|+.++++++++++
T Consensus         3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~~~~~~~l   53 (259)
T 1oaa_A            3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEEL   53 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHHHHHHHHH
Confidence            467899999996 6999999999999   8999999999999988887765

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.29  E-value=0.0047  Score=63.96  Aligned_cols=100  Identities=13%  Similarity=0.004  Sum_probs=66.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHC-CC-eEEEEeCCHH----HHHHHHHHhcCC------------------cccc-cccc
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSR-GA-RVVIFDIDFE----RAKSLASDVMGA------------------ARPF-EDIL  357 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~-G~-~v~i~nRt~~----~a~~la~~~~~~------------------~~~~-~~l~  357 (454)
                      -.++.|||+|-+|.+++..|++. |. +|++++|+++    +.+++.+.....                  .+.. .+ .
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~   96 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-F   96 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-G
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-H
Confidence            35899999999999999999999 99 9999999999    887775421000                  0011 11 1


Q ss_pred             ccCCCCccEEEECCCCCCCCCCC----CCCCC---h---hcccCCcEEEEEecCCCC
Q 012866          358 NFQPEKGAILANATPLGMHPNTD----RVPVS---E---ETLRDYQLVFDAVYTPRK  404 (454)
Q Consensus       358 ~~~~~~~divInat~~g~~p~~~----~~~i~---~---~~l~~~~~v~D~~y~P~~  404 (454)
                      + .+.++|+||-|.|....++..    -..+.   .   ..++++.+|+|.+..|..
T Consensus        97 e-a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pg  152 (478)
T 3g79_A           97 S-RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPG  152 (478)
T ss_dssp             G-GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTT
T ss_pred             H-HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChH
Confidence            2 356789999998765432211    00011   1   235678889888876654

>3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0047  Score=58.06  Aligned_cols=71  Identities=14%  Similarity=0.098  Sum_probs=52.2

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRG--ARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G--~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      +|+++|.|+ ||+|++++..|++.|  +.|++++|+.+++++++++++...    .++.+   +..+      .....|+
T Consensus         2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id~   81 (254)
T 3kzv_A            2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAPLKKLKEKYGDRFFYVVGDITEDSVLKQLVNAAVKGHGKIDS   81 (254)
T ss_dssp             CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHHHHHHHHHHGGGEEEEESCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHhcCCccE
Confidence            578999996 699999999999886  589999999999999988876432    12222   1110      1136799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        82 lvnnAg~   88 (254)
T 3kzv_A           82 LVANAGV   88 (254)
T ss_dssp             EEEECCC
T ss_pred             EEECCcc
Confidence            9998764

>2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis}

Probab=96.29  E-value=0.0063  Score=56.78  Aligned_cols=46  Identities=30%  Similarity=0.559  Sum_probs=40.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|+++.| +.++++++++++
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   49 (246)
T 2uvd_A            2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQKANEVVDEI   49 (246)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            45789999996 69999999999999999999999 888888777665

>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A

Probab=96.28  E-value=0.0078  Score=55.90  Aligned_cols=69  Identities=25%  Similarity=0.281  Sum_probs=47.7

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc--cccc------CCCCccEEEECC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED--ILNF------QPEKGAILANAT  371 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~--l~~~------~~~~~divInat  371 (454)
                      +|+++|.|+ ||.|++++..|++.|++|++++|+.++   ++++++...  .++.+  +...      .....|++||+.
T Consensus         2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~---~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~g~id~lv~~A   78 (239)
T 2ekp_A            2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE---AAQSLGAVPLPTDLEKDDPKGLVKRALEALGGLHVLVHAA   78 (239)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH---HHHHHTCEEEECCTTTSCHHHHHHHHHHHHTSCCEEEECC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH---HHHhhCcEEEecCCchHHHHHHHHHHHHHcCCCCEEEECC
Confidence            578999996 699999999999999999999999876   333443211  12222  1110      123679999987


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      ...
T Consensus        79 g~~   81 (239)
T 2ekp_A           79 AVN   81 (239)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.27  E-value=0.0055  Score=60.10  Aligned_cols=39  Identities=28%  Similarity=0.419  Sum_probs=34.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKS  341 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~  341 (454)
                      -++|.|||||-||+.+|..++..|++|++++++++..++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~   44 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITG   44 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHH
Confidence            368999999999999999999999999999999876544

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=96.26  E-value=0.01  Score=58.36  Aligned_cols=71  Identities=20%  Similarity=0.141  Sum_probs=52.8

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc---cccc----cCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE---DILN----FQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~---~l~~----~~~~~~divInat~  372 (454)
                      .+++|+|+|+ ||+|++++..++..|++|+++.|+.++.+.+.++++... ++..   ++.+    .....+|++|+++.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  234 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENVG  234 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECCC
Confidence            5789999997 999999999999999999999999988776655676532 2221   1111    01135899999985

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.25  E-value=0.0092  Score=57.82  Aligned_cols=71  Identities=21%  Similarity=0.191  Sum_probs=50.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhc-------CC-ccc-cccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVM-------GA-ARP-FEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~-------~~-~~~-~~~l~~~~~~~~divInat~~  373 (454)
                      ++.|+|+|.+|.++++.|+..|.  +|.++++++++++..+.++.       .. .+. ..+ .+ .+.++|+||.|.+.
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~-a~~~aDiVViaag~   79 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YS-LLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GG-GGTTCSEEEECCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HH-HhCCCCEEEECCCC
Confidence            68999999999999999998887  89999999998774433221       11 011 123 23 46789999999876


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      .-.|
T Consensus        80 ~~kp   83 (294)
T 1oju_A           80 ARKP   83 (294)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            5444

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.25  E-value=0.0032  Score=62.16  Aligned_cols=113  Identities=14%  Similarity=0.157  Sum_probs=77.4

Q ss_pred             CceEEEEccc-hhHHHHHHHHHHC--CCe-EEEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCC
Q 012866          303 GRMFVLAGAG-GAGRALAFGAKSR--GAR-VVIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       303 ~k~vlViGaG-G~arai~~~L~~~--G~~-v~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      .-++.|||+| .+|+..+.+|.+.  +++ +.|++|+++++++++++++..  +.+++++-+  -.+.|+|+.|||....
T Consensus        18 ~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~--~~~vD~V~i~tp~~~H   95 (340)
T 1zh8_A           18 KIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLE--SGLVDAVDLTLPVELN   95 (340)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHH--SSCCSEEEECCCGGGH
T ss_pred             ceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhc--CCCCCEEEEeCCchHH
Confidence            3589999999 7999999999876  455 479999999999999999762  223444321  2468999999986432


Q ss_pred             CCCCCCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHHHH
Q 012866          377 PNTDRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      .     ++....+..+. ++++   +|.-      ..+.+.|++.|..+.-|..+.
T Consensus        96 ~-----~~~~~al~aGkhVl~E---KPla~~~~ea~~l~~~a~~~g~~~~v~~~~R  143 (340)
T 1zh8_A           96 L-----PFIEKALRKGVHVICE---KPISTDVETGKKVVELSEKSEKTVYIAENFR  143 (340)
T ss_dssp             H-----HHHHHHHHTTCEEEEE---SSSSSSHHHHHHHHHHHHHCSSCEEEECGGG
T ss_pred             H-----HHHHHHHHCCCcEEEe---CCCCCCHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            1     12234555543 4444   5642      346677888898877665544

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.22  E-value=0.0049  Score=61.17  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=53.8

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc---ccccCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED---ILNFQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~---l~~~~~~~~divInat~~  373 (454)
                      .|.+|+|+|+|++|.+++..++..|++|+++.++.++.+.+.++++... ++..+   +.+ ....+|++|++++.
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~-~~~g~D~vid~~g~  254 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSE-LADSLDYVIDTVPV  254 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHH-STTTEEEEEECCCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHH-hcCCCCEEEECCCC
Confidence            5789999999999999999888899999999999888766554777542 22222   222 23468999999863

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.22  E-value=0.012  Score=57.79  Aligned_cols=69  Identities=16%  Similarity=0.151  Sum_probs=51.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------C-cccc-ccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG-------A-ARPF-EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~-------~-~~~~-~~l~~~~~~~~divInat~~  373 (454)
                      .++.|||+|.+|.+++..|+..|. +|++++++.++++..+..+..       . .+.. .++ + .+.++|+||.|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~-al~~aD~VI~avg~   92 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-E-YLQNSDVVIITAGV   92 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-G-GGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-H-HHCCCCEEEEcCCC
Confidence            589999999999999999999998 999999999888764433211       1 1111 334 2 45789999999854


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      .
T Consensus        93 p   93 (328)
T 2hjr_A           93 P   93 (328)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=96.21  E-value=0.0032  Score=53.99  Aligned_cols=103  Identities=17%  Similarity=0.188  Sum_probs=66.4

Q ss_pred             CCCceEEEEcc----chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCC
Q 012866          301 LAGRMFVLAGA----GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       301 ~~~k~vlViGa----GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ++.+++.|||+    |-+|+.++..|.+.|++|+.+|++.++.      .|... -+++++    ....|++|-++|...
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i------~G~~~~~s~~el----~~~vDlvii~vp~~~   81 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------EGLKCYRSVREL----PKDVDVIVFVVPPKV   81 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEECBSSGGGS----CTTCCEEEECSCHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeE------CCeeecCCHHHh----CCCCCEEEEEeCHHH
Confidence            45688999999    9999999999999999988888774221      23222 134443    346899999998422


Q ss_pred             CCCCCCCCCChhccc--CCcEEEEEecCCCCCHHHHHHHHCCCceec
Q 012866          376 HPNTDRVPVSEETLR--DYQLVFDAVYTPRKTRLLKDAEAAGAIIVS  420 (454)
Q Consensus       376 ~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~  420 (454)
                      .+.     +-.+++.  .+.++++...  ..-.+.+.|+++|.++++
T Consensus        82 v~~-----v~~~~~~~g~~~i~~~~~~--~~~~l~~~a~~~Gi~~ig  121 (138)
T 1y81_A           82 GLQ-----VAKEAVEAGFKKLWFQPGA--ESEEIRRFLEKAGVEYSF  121 (138)
T ss_dssp             HHH-----HHHHHHHTTCCEEEECTTS--CCHHHHHHHHHHTCEEEC
T ss_pred             HHH-----HHHHHHHcCCCEEEEcCcc--HHHHHHHHHHHCCCEEEc
Confidence            111     1122222  2345554422  256788899999999886

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=96.20  E-value=0.0094  Score=58.42  Aligned_cols=73  Identities=23%  Similarity=0.320  Sum_probs=52.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~~g  374 (454)
                      .++.|+|+|.+|.++++.|+..+.  +|.+++++.++++..+.++....       +..++ .+ ...++|+||.+.+..
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~-~~-a~~~aDvVii~ag~~   83 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGE-YS-DCKDADLVVITAGAP   83 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECC-GG-GGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECC-HH-HhCCCCEEEECCCCC
Confidence            589999999999999999998775  89999999999988777664321       11122 22 357899999999776


Q ss_pred             CCCC
Q 012866          375 MHPN  378 (454)
Q Consensus       375 ~~p~  378 (454)
                      ..|.
T Consensus        84 ~~~g   87 (318)
T 1ez4_A           84 QKPG   87 (318)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            5553

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.19  E-value=0.014  Score=56.83  Aligned_cols=72  Identities=24%  Similarity=0.273  Sum_probs=50.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHh--cCC---c--ccc-ccccccCCCCccEEEECCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDV--MGA---A--RPF-EDILNFQPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~--~~~---~--~~~-~~l~~~~~~~~divInat~  372 (454)
                      ..++.|||+|.+|.++++.|+..|.  +|++++|+.++++..+.++  +..   .  +.. .+.+  ...++|+||.|++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~aD~Vii~v~   84 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE--ICRDADMVVITAG   84 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG--GGTTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHH--HhCCCCEEEECCC
Confidence            3589999999999999999999997  9999999988876332221  110   0  111 1222  3467999999997


Q ss_pred             CCCC
Q 012866          373 LGMH  376 (454)
Q Consensus       373 ~g~~  376 (454)
                      ....
T Consensus        85 ~~~~   88 (319)
T 1lld_A           85 PRQK   88 (319)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            5433

>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2

Probab=96.19  E-value=0.0067  Score=56.86  Aligned_cols=73  Identities=21%  Similarity=0.108  Sum_probs=50.1

Q ss_pred             CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC-c-ccc-cccccc--CCCCccEEEECC
Q 012866          298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA-A-RPF-EDILNF--QPEKGAILANAT  371 (454)
Q Consensus       298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~-~-~~~-~~l~~~--~~~~~divInat  371 (454)
                      ...+++|+++|.|+ ||.|++++..|++.|++|++++|+.+.++++    +.. . .++ +++..+  ...+.|+|||+.
T Consensus        14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~D~~~~~~~~~~~~~~iD~lv~~A   89 (249)
T 1o5i_A           14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRS----GHRYVVCDLRKDLDLLFEKVKEVDILVLNA   89 (249)
T ss_dssp             --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHT----CSEEEECCTTTCHHHHHHHSCCCSEEEECC
T ss_pred             HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHhh----CCeEEEeeHHHHHHHHHHHhcCCCEEEECC
Confidence            35688999999996 6999999999999999999999998554433    211 1 122 111110  123689999987


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      ...
T Consensus        90 g~~   92 (249)
T 1o5i_A           90 GGP   92 (249)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            643

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.17  E-value=0.0038  Score=63.87  Aligned_cols=99  Identities=13%  Similarity=0.054  Sum_probs=64.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-----------------CccccccccccCCCCccEE
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-----------------AARPFEDILNFQPEKGAIL  367 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-----------------~~~~~~~l~~~~~~~~div  367 (454)
                      ++.|||+|.+|.+++..|++.|.+|++++|++++++++.+....                 ......++.+ .+.++|+|
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~-~~~~aDvv   80 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKK-AVLDSDVS   80 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHH-HHHTCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHH-HhccCCEE
Confidence            58999999999999999999999999999999999888652100                 0000112211 23568999


Q ss_pred             EECCCCCCCCCCCCCCC---Ch------hcccC---CcEEEEEecCCCCC
Q 012866          368 ANATPLGMHPNTDRVPV---SE------ETLRD---YQLVFDAVYTPRKT  405 (454)
Q Consensus       368 Inat~~g~~p~~~~~~i---~~------~~l~~---~~~v~D~~y~P~~T  405 (454)
                      |-|+|...... ....+   ..      ..+++   +.+|++.+-.|..|
T Consensus        81 iiaVptp~~~~-~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~  129 (436)
T 1mv8_A           81 FICVGTPSKKN-GDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGT  129 (436)
T ss_dssp             EECCCCCBCTT-SSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTH
T ss_pred             EEEcCCCcccC-CCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCc
Confidence            99997543211 01011   11      12566   78888887666655

>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*

Probab=96.17  E-value=0.0033  Score=59.13  Aligned_cols=70  Identities=11%  Similarity=0.138  Sum_probs=49.2

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh---cCCcc--cccccccc------CCCCccEEEECC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV---MGAAR--PFEDILNF------QPEKGAILANAT  371 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~---~~~~~--~~~~l~~~------~~~~~divInat  371 (454)
                      |+++|.|+ ||+|++++..|++.|++|++++|+.++.+++.+ +   +....  +.+++..+      .....|+|||+.
T Consensus         2 k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~-l~~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lv~nA   80 (254)
T 1zmt_A            2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA-FAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSND   80 (254)
T ss_dssp             CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH-HHHHCTTSEECCCCSHHHHHHHHHHHHSCCCEEEEEC
T ss_pred             eEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-HHhcCCcEEEECHHHHHHHHHHHHHHhCCCCEEEECC
Confidence            57899986 699999999999999999999999888776654 3   22221  22222110      123679999987


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      ...
T Consensus        81 g~~   83 (254)
T 1zmt_A           81 IFA   83 (254)
T ss_dssp             CCC
T ss_pred             CcC
Confidence            653

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.17  E-value=0.0063  Score=59.97  Aligned_cols=74  Identities=15%  Similarity=0.140  Sum_probs=53.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC------Cc--ccc-ccccccCCCCccEEEECCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG------AA--RPF-EDILNFQPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~------~~--~~~-~~l~~~~~~~~divInat~  372 (454)
                      ..++.|||+|.+|.+++..|+..|. +|++++++.++++..+..+..      ..  +.. .++++ .+.++|+||.+..
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~e-a~~~aDiVi~a~g   87 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEA-ALTGADCVIVTAG   87 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHH-HHTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHH-HhCCCCEEEEccC
Confidence            3589999999999999999999998 999999999888774433311      11  111 34442 3578999999985


Q ss_pred             CCCCC
Q 012866          373 LGMHP  377 (454)
Q Consensus       373 ~g~~p  377 (454)
                      ....|
T Consensus        88 ~p~~~   92 (331)
T 1pzg_A           88 LTKVP   92 (331)
T ss_dssp             CSSCT
T ss_pred             CCCCC
Confidence            54444

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.16  E-value=0.015  Score=56.73  Aligned_cols=72  Identities=24%  Similarity=0.289  Sum_probs=55.1

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      ++.|+|+|.+|.++++.|+..+.  +|.+++++.++++..+.++....       +...+. + ...++|+||.+.+...
T Consensus         2 KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~-~-a~~~aD~Vii~ag~~~   79 (310)
T 2xxj_A            2 KVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSY-G-DLEGARAVVLAAGVAQ   79 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCG-G-GGTTEEEEEECCCCCC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCH-H-HhCCCCEEEECCCCCC
Confidence            68999999999999999998874  89999999999988777765321       111222 2 3578999999998765


Q ss_pred             CCC
Q 012866          376 HPN  378 (454)
Q Consensus       376 ~p~  378 (454)
                      .|.
T Consensus        80 ~~g   82 (310)
T 2xxj_A           80 RPG   82 (310)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            553

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=96.15  E-value=0.0068  Score=58.25  Aligned_cols=70  Identities=11%  Similarity=0.168  Sum_probs=49.0

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHH--hcCCc--ccccc---ccccCCCCccEEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-----FERAKSLASD--VMGAA--RPFED---ILNFQPEKGAILAN  369 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-----~~~a~~la~~--~~~~~--~~~~~---l~~~~~~~~divIn  369 (454)
                      .++++|+|+ |+.|++++.+|.+.|.+|+++.|+     +++++.+...  -+...  .++.+   +.. .+.++|+||+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~-~~~~~d~vi~   82 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVD-ALKQVDVVIS   82 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHH-HHTTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHH-HHhCCCEEEE
Confidence            367999996 899999999999999999999998     5566554321  12211  23322   333 3467899999


Q ss_pred             CCCC
Q 012866          370 ATPL  373 (454)
Q Consensus       370 at~~  373 (454)
                      +++.
T Consensus        83 ~a~~   86 (313)
T 1qyd_A           83 ALAG   86 (313)
T ss_dssp             CCCC
T ss_pred             CCcc
Confidence            8864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.15  E-value=0.0039  Score=57.90  Aligned_cols=105  Identities=10%  Similarity=0.008  Sum_probs=66.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-----ccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-----PFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      .++++|+|+|..|+.++..|.+.|. |++++|++++++.+.  .+...+     +.+.+....+.++|.||.+|+.... 
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~-   84 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR--SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSE-   84 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHH-
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHH-
Confidence            4689999999999999999999999 999999999888776  332221     1222333246789999998863110 


Q ss_pred             CCCCCCCC--hhcccCCcEEEEEecCCCCCHHHHHHHHCCCc
Q 012866          378 NTDRVPVS--EETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI  417 (454)
Q Consensus       378 ~~~~~~i~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~  417 (454)
                         ...+.  ...+.+...++-.+.+|.....   .++.|+.
T Consensus        85 ---n~~~~~~a~~~~~~~~iia~~~~~~~~~~---l~~~G~~  120 (234)
T 2aef_A           85 ---TIHCILGIRKIDESVRIIAEAERYENIEQ---LRMAGAD  120 (234)
T ss_dssp             ---HHHHHHHHHHHCSSSEEEEECSSGGGHHH---HHHHTCS
T ss_pred             ---HHHHHHHHHHHCCCCeEEEEECCHhHHHH---HHHCCCC
Confidence               00000  0113344344555566665544   4466776

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=96.14  E-value=0.011  Score=58.02  Aligned_cols=73  Identities=19%  Similarity=0.276  Sum_probs=53.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~~  373 (454)
                      ..++.|+|+|.+|.++++.|+..+.  +|.+++++.++++..+.++....       +..++ .+ ...++|+||.+.+.
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~-~~-a~~~aDvVii~ag~   86 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAE-YS-DAKDADLVVITAGA   86 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECC-GG-GGGGCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECC-HH-HhCCCCEEEEcCCC
Confidence            4689999999999999999988775  89999999999988777664321       11122 22 35789999999977


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      ...|
T Consensus        87 ~~k~   90 (326)
T 2zqz_A           87 PQKP   90 (326)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            5554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=96.11  E-value=0.013  Score=57.02  Aligned_cols=71  Identities=20%  Similarity=0.268  Sum_probs=51.7

Q ss_pred             eEEEEccchhHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHhcCC------c--ccc-ccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSR--GARVVIFDIDFERAKSLASDVMGA------A--RPF-EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~--G~~v~i~nRt~~~a~~la~~~~~~------~--~~~-~~l~~~~~~~~divInat~~  373 (454)
                      ++.|+|+|.+|.+++..|+..  |.+|++++|+.++++.++.++...      .  +.. .+.++  +.++|+||.|++.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~--l~~aDvViiav~~   79 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD--TANSDIVIITAGL   79 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG--GTTCSEEEECCSC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH--HCCCCEEEEeCCC
Confidence            689999999999999999985  569999999998888776443221      1  111 23332  5679999999986


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      ...|
T Consensus        80 p~~~   83 (310)
T 1guz_A           80 PRKP   83 (310)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            4443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.09  E-value=0.014  Score=57.08  Aligned_cols=69  Identities=9%  Similarity=0.014  Sum_probs=48.1

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH---h-----cCCc---cc-cccccccCCCCccEEEECC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASD---V-----MGAA---RP-FEDILNFQPEKGAILANAT  371 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~---~-----~~~~---~~-~~~l~~~~~~~~divInat  371 (454)
                      .+++|||+|.+|.+++..|++.|.+|++++|+. . +++.+.   +     +...   +. ..+..+ ....+|+||-|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~-~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~-~~~~~DlVilav   79 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-Y-ETVKAKGIRIRSATLGDYTFRPAAVVRSAAE-LETKPDCTLLCI   79 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-H-HHHHHHCEEEEETTTCCEEECCSCEESCGGG-CSSCCSEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-H-HHHHhCCcEEeecCCCcEEEeeeeeECCHHH-cCCCCCEEEEec
Confidence            479999999999999999999999999999986 2 555443   1     1100   00 122222 233789999999


Q ss_pred             CCCC
Q 012866          372 PLGM  375 (454)
Q Consensus       372 ~~g~  375 (454)
                      +...
T Consensus        80 K~~~   83 (320)
T 3i83_A           80 KVVE   83 (320)
T ss_dssp             CCCT
T ss_pred             CCCC
Confidence            8653

>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2

Probab=96.09  E-value=0.0083  Score=57.32  Aligned_cols=76  Identities=16%  Similarity=0.200  Sum_probs=55.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QP  361 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~  361 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|+++.|+.++.+++.+++..   ..    .++.+   +.++      ..
T Consensus        40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  119 (285)
T 2c07_A           40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEH  119 (285)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCceeEEECCCCCHHHHHHHHHHHHHhc
Confidence            4567899999996 6999999999999999999999999988888776632   11    12222   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|+|||+....
T Consensus       120 ~~id~li~~Ag~~  132 (285)
T 2c07_A          120 KNVDILVNNAGIT  132 (285)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4679999987653

>3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides}

Probab=96.09  E-value=0.0009  Score=63.76  Aligned_cols=41  Identities=29%  Similarity=0.511  Sum_probs=35.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAK  340 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~  340 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|+.++.+
T Consensus        25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~~   66 (266)
T 3uxy_A           25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGIA   66 (266)
T ss_dssp             -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTSC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            467899999996 69999999999999999999999876543

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.09  E-value=0.00082  Score=62.48  Aligned_cols=69  Identities=7%  Similarity=0.046  Sum_probs=47.2

Q ss_pred             CCceEEEEc-cchhHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHHHhcCCc--cccc---cccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAG-AGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVMGAA--RPFE---DILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViG-aGG~arai~~~L~~~G-~~v~i~nRt~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~divInat~  372 (454)
                      ..++++|+| +|++|++++..|.+.| ++|+++.|+.++++++... +...  .++.   ++.. ...+.|+||++.+
T Consensus        22 ~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~-~~~~~~~Dl~d~~~~~~-~~~~~D~vv~~a~   97 (236)
T 3qvo_A           22 HMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPT-NSQIIMGDVLNHAALKQ-AMQGQDIVYANLT   97 (236)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCT-TEEEEECCTTCHHHHHH-HHTTCSEEEEECC
T ss_pred             cccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccC-CcEEEEecCCCHHHHHH-HhcCCCEEEEcCC
Confidence            457899999 5899999999999999 6999999998875543210 0111  1222   2222 2456799998764

>1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A*

Probab=96.07  E-value=0.007  Score=56.97  Aligned_cols=46  Identities=22%  Similarity=0.414  Sum_probs=39.9

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH-HHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER-AKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~-a~~la~~~  346 (454)
                      +++|+++|.|+ ||+|++++..|++.|++|+++.|+.++ ++++++++
T Consensus         2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~   49 (260)
T 1x1t_A            2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGL   49 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHH
Confidence            45789999996 699999999999999999999999887 77776655

>3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A*

Probab=96.06  E-value=0.0084  Score=56.56  Aligned_cols=46  Identities=22%  Similarity=0.305  Sum_probs=40.4

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDVM  347 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~~  347 (454)
                      ++|++||.|+ ||+|++++..|++.|++|++. +|+.++++++++++.
T Consensus         3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~~~   50 (258)
T 3oid_A            3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKAALETAEEIE   50 (258)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHH
Confidence            4789999996 699999999999999998885 999999998887763

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.06  E-value=0.0054  Score=61.62  Aligned_cols=109  Identities=17%  Similarity=0.208  Sum_probs=70.7

Q ss_pred             ceEEEEccc-hhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAG-GAGRALAFGAKSR-GAR-VVIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaG-G~arai~~~L~~~-G~~-v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      -++.|||+| .+++..+.+|.+. +++ +.|++|+.+++++++++++... .+++++-+  -.+.|+|+.+||.....  
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~--~~~vD~V~i~tp~~~H~--   78 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQ--HVQMDAVYIASPHQFHC--   78 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHH--HSCCSEEEECSCGGGHH--
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHc--CCCCCEEEEcCCcHHHH--
Confidence            378999999 8899999998876 455 5699999999999999997653 23444322  13589999999864321  


Q ss_pred             CCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceecc
Q 012866          380 DRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSG  421 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~G  421 (454)
                         .+....+..+.-|+  +=+|.-      -.+.+.|+++|..+.-|
T Consensus        79 ---~~~~~al~aGk~Vl--~EKP~a~~~~e~~~l~~~a~~~g~~~~v~  121 (387)
T 3moi_A           79 ---EHVVQASEQGLHII--VEKPLTLSRDEADRMIEAVERAGVHLVVG  121 (387)
T ss_dssp             ---HHHHHHHHTTCEEE--ECSCCCSCHHHHHHHHHHHHHHTCCEEEC
T ss_pred             ---HHHHHHHHCCCcee--eeCCccCCHHHHHHHHHHHHHhCCeEEEE
Confidence               12223444444332  224532      23566667777655443

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=96.05  E-value=0.012  Score=56.88  Aligned_cols=48  Identities=23%  Similarity=0.413  Sum_probs=40.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------------HHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID------------FERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt------------~~~a~~la~~~  346 (454)
                      ..+++|.++|.|+ ||+|++++..|++.|++|++++|+            .++++++++++
T Consensus        24 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (299)
T 3t7c_A           24 GKVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQV   84 (299)
T ss_dssp             CTTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHH
Confidence            3578999999996 599999999999999999999887            67777766554

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=96.04  E-value=0.0098  Score=56.07  Aligned_cols=47  Identities=32%  Similarity=0.415  Sum_probs=39.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++. .|+.++++++.+++
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~   53 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEI   53 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            467899999996 599999999999999998887 77777777776665

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=96.03  E-value=0.012  Score=55.91  Aligned_cols=47  Identities=32%  Similarity=0.460  Sum_probs=40.7

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-------------CHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-------------DFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-------------t~~~a~~la~~~  346 (454)
                      .+++|+++|.|+ ||+|++++..|++.|++|++++|             +.++++++++.+
T Consensus         8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   68 (277)
T 3tsc_A            8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYDPASPDDLSETVRLV   68 (277)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHHH
T ss_pred             ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeccccccccccccccCHHHHHHHHHHH
Confidence            478999999996 69999999999999999999988             677777776655

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.03  E-value=0.0057  Score=59.19  Aligned_cols=40  Identities=18%  Similarity=0.161  Sum_probs=36.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-----C-CeEEEEeCCHHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-----G-ARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-----G-~~v~i~nRt~~~a~~la~  344 (454)
                      .++.|||+|.+|.+++..|.+.     | .+|++++| .++++++.+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~   54 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRA   54 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHh
Confidence            4799999999999999999998     9 89999999 788888876

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=96.02  E-value=0.013  Score=57.29  Aligned_cols=70  Identities=23%  Similarity=0.244  Sum_probs=52.4

Q ss_pred             CCceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc--c----cccc-CCCCccEEEECCC
Q 012866          302 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE--D----ILNF-QPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~--~----l~~~-~~~~~divInat~  372 (454)
                      .|++|+|+| +|++|.+++..++..|++|+++.|+.++.+ ++++++... ++..  +    +.+. ....+|++|++++
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g  226 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLK-IAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG  226 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH-HHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence            578999999 799999999999999999999999988876 667777542 2221  1    1110 1236899999886

>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*

Probab=96.01  E-value=0.01  Score=56.39  Aligned_cols=48  Identities=29%  Similarity=0.483  Sum_probs=40.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~  346 (454)
                      ..+++|.+||.|+ ||+|++++..|++.|++|.+..| +.++++++++++
T Consensus        24 ~~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~   73 (269)
T 4dmm_A           24 LPLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGAADEVVAAI   73 (269)
T ss_dssp             CTTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHH
Confidence            3578999999996 69999999999999999988888 777777776655

>2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor}

Probab=96.01  E-value=0.001  Score=62.89  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=34.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAK  340 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~  340 (454)
                      ..+.+|+++|.|+ ||+|++++..|++.|++|+++.|+.++.+
T Consensus        17 ~~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~   59 (253)
T 2nm0_A           17 RSHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEPPE   59 (253)
T ss_dssp             ---CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHhhc
Confidence            4567899999996 69999999999999999999999876543

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.00  E-value=0.013  Score=58.39  Aligned_cols=114  Identities=17%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             ceEEEEccchhHH-HHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGR-ALAFGAKSRGAR-VVIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaGG~ar-ai~~~L~~~G~~-v~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      -++.|||+|.++. ..+..+...+++ +.|++|+++++++++++++..  +.+++++-+  -.+.|+|+.|||.....  
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~--~~~vD~V~I~tp~~~H~--  102 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILE--DENIGLIVSAAVSSERA--  102 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHT--CTTCCEEEECCCHHHHH--
T ss_pred             cEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhc--CCCCCEEEEeCChHHHH--
Confidence            4799999998874 566677778885 679999999999999999742  234444422  24689999999864332  


Q ss_pred             CCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHHHH
Q 012866          380 DRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                         .+-...+..+.-|+  +=+|.-      -.+++.|+++|..+.-|...--
T Consensus       103 ---~~~~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~g~~l~v~~~~R~  150 (361)
T 3u3x_A          103 ---ELAIRAMQHGKDVL--VDKPGMTSFDQLAKLRRVQAETGRIFSILYSEHF  150 (361)
T ss_dssp             ---HHHHHHHHTTCEEE--EESCSCSSHHHHHHHHHHHHTTCCCEEEECHHHH
T ss_pred             ---HHHHHHHHCCCeEE--EeCCCCCCHHHHHHHHHHHHHcCCEEEEechHhh
Confidence               12234455554332  235642      3467778888998877766544

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.99  E-value=0.0088  Score=59.43  Aligned_cols=109  Identities=22%  Similarity=0.214  Sum_probs=69.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCCc-cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GARV-VIFDIDFERAKSLASDVMGAA-RPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~v-~i~nRt~~~a~~la~~~~~~~-~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      -++.|||+|.+|+..+.+|.+. +++| .|++|+.++++ .++.++... .+++++-+  -.+.|+|+.|||.....   
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~-~a~~~g~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~---   79 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKRE-AAAQKGLKIYESYEAVLA--DEKVDAVLIATPNDSHK---   79 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHH-HHHTTTCCBCSCHHHHHH--CTTCCEEEECSCGGGHH---
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHH-HHHhcCCceeCCHHHHhc--CCCCCEEEEcCCcHHHH---
Confidence            4799999999999999998877 5665 58899999986 456666532 23343321  24689999999864321   


Q ss_pred             CCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccH
Q 012866          381 RVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGV  422 (454)
Q Consensus       381 ~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl  422 (454)
                        .+....+..+.-|+  +=+|.-      -.+++.|+++|..+.-|.
T Consensus        80 --~~~~~al~aGkhVl--~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~  123 (359)
T 3e18_A           80 --ELAISALEAGKHVV--CEKPVTMTSEDLLAIMDVAKRVNKHFMVHQ  123 (359)
T ss_dssp             --HHHHHHHHTTCEEE--EESSCCSSHHHHHHHHHHHHHHTCCEEEEC
T ss_pred             --HHHHHHHHCCCCEE--eeCCCcCCHHHHHHHHHHHHHhCCeEEEEe
Confidence              12234455554333  224432      346667777787665444

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.99  E-value=0.013  Score=57.05  Aligned_cols=73  Identities=16%  Similarity=0.187  Sum_probs=52.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC------c--ccc-ccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA------A--RPF-EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~------~--~~~-~~l~~~~~~~~divInat~~  373 (454)
                      .+|.|+|+|.+|.++++.|+..|. +|.+++++.++++..+.++...      .  +.. .+.+  .+.++|+||.+.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~--a~~~aD~Vi~a~g~   80 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA--DTANSDVIVVTSGA   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG--GGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCHH--HHCCCCEEEEcCCC
Confidence            479999999999999999999997 9999999988887766555321      1  111 3442  35789999999876


Q ss_pred             CCCCC
Q 012866          374 GMHPN  378 (454)
Q Consensus       374 g~~p~  378 (454)
                      +..|.
T Consensus        81 p~~~g   85 (309)
T 1ur5_A           81 PRKPG   85 (309)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            65543

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.99  E-value=0.016  Score=56.75  Aligned_cols=69  Identities=19%  Similarity=0.174  Sum_probs=52.1

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------Cc-ccc-ccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG-------AA-RPF-EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~-------~~-~~~-~~l~~~~~~~~divInat~~  373 (454)
                      .++.|||+|.+|.+++..|+..|. +|.+++++.++++..+..+..       .. +.. .++ + .+.++|+||.|.+.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~-al~~aD~Vi~a~g~   82 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-D-DLAGADVVIVTAGF   82 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-G-GGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-H-HhCCCCEEEEeCCC
Confidence            589999999999999999999998 999999999888765554432       11 111 344 2 45789999999854


Q ss_pred             C
Q 012866          374 G  374 (454)
Q Consensus       374 g  374 (454)
                      .
T Consensus        83 p   83 (322)
T 1t2d_A           83 T   83 (322)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.99  E-value=0.011  Score=58.33  Aligned_cols=71  Identities=23%  Similarity=0.239  Sum_probs=53.0

Q ss_pred             CC--ceEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc--c----ccccCCCCccEEEEC
Q 012866          302 AG--RMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE--D----ILNFQPEKGAILANA  370 (454)
Q Consensus       302 ~~--k~vlViGa-GG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~--~----l~~~~~~~~divIna  370 (454)
                      .+  ++|+|+|+ ||+|++++..++..|+ +|+++.|+.++.+.+.++++... ++..  +    +.+......|++||+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            46  89999998 9999999999999999 99999999988877766576532 2221  1    111011258999999


Q ss_pred             CC
Q 012866          371 TP  372 (454)
Q Consensus       371 t~  372 (454)
                      +.
T Consensus       238 ~G  239 (357)
T 2zb4_A          238 VG  239 (357)
T ss_dssp             CC
T ss_pred             CC
Confidence            86

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=95.98  E-value=0.0028  Score=63.09  Aligned_cols=118  Identities=19%  Similarity=0.184  Sum_probs=78.0

Q ss_pred             ceEEEEccchhHHH-HHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCC--ccccccccccCCCCccEEEECCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRA-LAFGAKSR-GARV-VIFDIDFERAKSLASDVMGA--ARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       304 k~vlViGaGG~ara-i~~~L~~~-G~~v-~i~nRt~~~a~~la~~~~~~--~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      -++.|||+|.+|+. .+.+|.+. +++| .|++|+++++++++++++..  +.+++++-+  -.+.|+|+.|||..... 
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~--~~~vD~V~i~tp~~~H~-   82 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLN--QVPLDAVVMAGPPQLHF-   82 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHH--HSCCSEEEECSCHHHHH-
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhc--CCCCCEEEEcCCcHHHH-
Confidence            47999999999984 78888876 5665 49999999999999887532  224444322  13579999999854321 


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHHHHHHHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMFLRQAI  430 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~mlv~Qa~  430 (454)
                          .+-...+..+.-|+  +=+|.-      -.+.+.|+++|..+.-|....-.-+.
T Consensus        83 ----~~~~~al~aGkhVl--~EKPla~~~~e~~~l~~~a~~~g~~~~v~~~~R~~p~~  134 (359)
T 3m2t_A           83 ----EMGLLAMSKGVNVF--VEKPPCATLEELETLIDAARRSDVVSGVGMNFKFARPV  134 (359)
T ss_dssp             ----HHHHHHHHTTCEEE--ECSCSCSSHHHHHHHHHHHHHHTCCEEECCHHHHCHHH
T ss_pred             ----HHHHHHHHCCCeEE--EECCCcCCHHHHHHHHHHHHHcCCEEEEEecccCcHHH
Confidence                12234455554333  235642      24677888889988777766543333

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.98  E-value=0.0079  Score=58.14  Aligned_cols=70  Identities=13%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH------HHHHHHHHH--hcCCc--ccccc---ccccCCCCccEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF------ERAKSLASD--VMGAA--RPFED---ILNFQPEKGAILA  368 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~------~~a~~la~~--~~~~~--~~~~~---l~~~~~~~~divI  368 (454)
                      .++++|+|+ |+.|++++.+|.+.|++|+++.|+.      ++++.+...  -+...  .++.+   +.. ...++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~-a~~~~d~vi   82 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVS-VLKQVDIVI   82 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHTTCSEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHH-HHcCCCEEE
Confidence            467999996 8999999999999999999999985      455444321  12221  23322   333 346789999


Q ss_pred             ECCCC
Q 012866          369 NATPL  373 (454)
Q Consensus       369 nat~~  373 (454)
                      ++++.
T Consensus        83 ~~a~~   87 (321)
T 3c1o_A           83 SALPF   87 (321)
T ss_dssp             ECCCG
T ss_pred             ECCCc
Confidence            98763

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=95.97  E-value=0.012  Score=55.75  Aligned_cols=48  Identities=27%  Similarity=0.362  Sum_probs=40.2

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC-CHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI-DFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR-t~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||.|++++..|++.|++|+++.| +.+..+++.+.+
T Consensus        25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~   74 (271)
T 4iin_A           25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVADALKNEL   74 (271)
T ss_dssp             CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHH
Confidence            4678999999996 69999999999999999999999 556666665554

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.95  E-value=0.0054  Score=62.09  Aligned_cols=111  Identities=16%  Similarity=0.196  Sum_probs=75.1

Q ss_pred             eEEEEccchhHHHHHHHHHHC---------CCe-EEEEeCCHHHHHHHHHHhcCCc--cccccccccCCCCccEEEECCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSR---------GAR-VVIFDIDFERAKSLASDVMGAA--RPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~---------G~~-v~i~nRt~~~a~~la~~~~~~~--~~~~~l~~~~~~~~divInat~  372 (454)
                      ++.|||+|.+|+.-+.++.+.         +++ +.|++++++++++++++++...  .+++++-+  -.+.|+|+.|||
T Consensus        28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~--~~~vD~V~I~tp  105 (412)
T 4gqa_A           28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVN--DPQVDVVDITSP  105 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHH--CTTCCEEEECSC
T ss_pred             eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhc--CCCCCEEEECCC
Confidence            899999999999888877753         344 5689999999999999998642  34454322  246899999999


Q ss_pred             CCCCCCCCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHH
Q 012866          373 LGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       373 ~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~m  424 (454)
                      .....     ++....+..+.-|+  +=+|.-      -.+++.|++.|..+.-|...
T Consensus       106 ~~~H~-----~~~~~al~aGkhVl--~EKP~a~~~~ea~~l~~~a~~~g~~~~v~~~~  156 (412)
T 4gqa_A          106 NHLHY-----TMAMAAIAAGKHVY--CEKPLAVNEQQAQEMAQAARRAGVKTMVAFNN  156 (412)
T ss_dssp             GGGHH-----HHHHHHHHTTCEEE--EESCSCSSHHHHHHHHHHHHHHTCCEEEECGG
T ss_pred             cHHHH-----HHHHHHHHcCCCeE--eecCCcCCHHHHHHHHHHHHHhCCeeeeccce
Confidence            65432     13334455554332  225542      35667777888877666543

>1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2

Probab=95.94  E-value=0.0081  Score=56.29  Aligned_cols=45  Identities=18%  Similarity=0.308  Sum_probs=37.5

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      ..+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.++..
T Consensus        10 ~~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~~~~   55 (265)
T 1h5q_A           10 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVT   55 (265)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHH
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhhHHHH
Confidence            3577899999996 69999999999999999999999766554433

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.94  E-value=0.0049  Score=59.72  Aligned_cols=36  Identities=22%  Similarity=0.205  Sum_probs=32.7

Q ss_pred             CceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          303 GRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       303 ~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      .+++.||| +|.+|.+++..|.+.|.+|++++|+.+.
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~   57 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA   57 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc
Confidence            46899999 9999999999999999999999998653

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.94  E-value=0.045  Score=55.69  Aligned_cols=111  Identities=23%  Similarity=0.328  Sum_probs=71.6

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCC---eEEEEeCC----HHHH-----------HHHHHHhcCCccccccccccC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGA---RVVIFDID----FERA-----------KSLASDVMGAARPFEDILNFQ  360 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~---~v~i~nRt----~~~a-----------~~la~~~~~~~~~~~~l~~~~  360 (454)
                      ..+++.++++.|||.+|-+++..|...|.   +|++++|.    .+|.           +++++..+..  ....|.+ .
T Consensus       215 k~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~--~~~~L~e-a  291 (487)
T 3nv9_A          215 KDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPS--KFGSIAE-A  291 (487)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTT--CCCSHHH-H
T ss_pred             CChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccc--cCCCHHH-H
Confidence            56788999999999999999999999998   79999974    2321           1233332111  1223444 3


Q ss_pred             CCCccEEEECCCCCCCCCCCCCCCChhcc---cCCcEEEEEecCCC--CCHHHHHHHHCCC-ceecc
Q 012866          361 PEKGAILANATPLGMHPNTDRVPVSEETL---RDYQLVFDAVYTPR--KTRLLKDAEAAGA-IIVSG  421 (454)
Q Consensus       361 ~~~~divInat~~g~~p~~~~~~i~~~~l---~~~~~v~D~~y~P~--~T~ll~~A~~~G~-~~~~G  421 (454)
                      ++.+|++|-++..|  |.    .+.++++   .+..++|-++ ||.  -||  ++|.+.|. .+..|
T Consensus       292 v~~adVlIG~S~~~--pg----~ft~e~V~~Ma~~PIIFaLS-NPtpEi~p--e~A~~~G~aIvATG  349 (487)
T 3nv9_A          292 CVGADVLISLSTPG--PG----VVKAEWIKSMGEKPIVFCCA-NPVPEIYP--YEAKEAGAYIVATG  349 (487)
T ss_dssp             HTTCSEEEECCCSS--CC----CCCHHHHHTSCSSCEEEECC-SSSCSSCH--HHHHHTTCSEEEES
T ss_pred             HhcCCEEEEecccC--CC----CCCHHHHHhhcCCCEEEECC-CCCccCCH--HHHHHhCCEEEEEC
Confidence            55679999877442  22    3566654   3678999987 443  465  56666653 33444

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.93  E-value=0.0042  Score=62.69  Aligned_cols=115  Identities=17%  Similarity=0.172  Sum_probs=75.8

Q ss_pred             CceEEEEccch---hHHHHHHHHHHCC-CeEE--EEeCCHHHHHHHHHHhcCC----ccccccccccC---CCCccEEEE
Q 012866          303 GRMFVLAGAGG---AGRALAFGAKSRG-ARVV--IFDIDFERAKSLASDVMGA----ARPFEDILNFQ---PEKGAILAN  369 (454)
Q Consensus       303 ~k~vlViGaGG---~arai~~~L~~~G-~~v~--i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~---~~~~divIn  369 (454)
                      .-++.|||+|.   +|+.-+.++...+ ++++  |++|+++++++++++++..    +.+++++-+..   ..+.|+|+.
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            35899999999   9999888888766 4665  6899999999999999863    12344432100   135899999


Q ss_pred             CCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceeccHHH
Q 012866          370 ATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       370 at~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~m  424 (454)
                      |||.....     .+-...+..+.-|+  +=+|.-      -.+++.|+++|..+.-|...
T Consensus        92 ~tp~~~H~-----~~~~~al~aGkhVl--~EKPla~~~~ea~~l~~~a~~~g~~~~v~~~~  145 (398)
T 3dty_A           92 ATPNGTHY-----SITKAALEAGLHVV--CEKPLCFTVEQAENLRELSHKHNRIVGVTYGY  145 (398)
T ss_dssp             ESCGGGHH-----HHHHHHHHTTCEEE--ECSCSCSCHHHHHHHHHHHHHTTCCEEECCGG
T ss_pred             CCCcHHHH-----HHHHHHHHCCCeEE--EeCCCcCCHHHHHHHHHHHHHcCCeEEEEecc
Confidence            99865432     12234455554332  224542      24677788888876655543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.93  E-value=0.0076  Score=57.76  Aligned_cols=70  Identities=19%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC------HHHHHHHHHH--hcCCc--ccccc---ccccCCCCccEEE
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID------FERAKSLASD--VMGAA--RPFED---ILNFQPEKGAILA  368 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt------~~~a~~la~~--~~~~~--~~~~~---l~~~~~~~~divI  368 (454)
                      .++++|+|+ |+.|++++.+|.+.|.+|+++.|+      +++++.+...  -+...  .++.+   +.+ ...++|+||
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~-~~~~~d~vi   82 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVE-AVKNVDVVI   82 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHH-HHHTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHH-HHcCCCEEE
Confidence            467999996 899999999999999999999997      4454433221  12211  22322   222 245689999


Q ss_pred             ECCCC
Q 012866          369 NATPL  373 (454)
Q Consensus       369 nat~~  373 (454)
                      ++++.
T Consensus        83 ~~a~~   87 (308)
T 1qyc_A           83 STVGS   87 (308)
T ss_dssp             ECCCG
T ss_pred             ECCcc
Confidence            98763

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=95.93  E-value=0.024  Score=55.70  Aligned_cols=75  Identities=12%  Similarity=0.085  Sum_probs=55.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC-c-------cccccccccCCCCccEEEECC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA-A-------RPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~-~-------~~~~~l~~~~~~~~divInat  371 (454)
                      ..+++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++... .       ....+.+  ..+++|+||.|.
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~--~~~daDiVIita   97 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYS--VSAGSKLVVITA   97 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSC--SCSSCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHH--HhCCCCEEEEeC
Confidence            45789999999999999999999886  8999999999888776555321 1       1112333  357899999887


Q ss_pred             CCCCCCC
Q 012866          372 PLGMHPN  378 (454)
Q Consensus       372 ~~g~~p~  378 (454)
                      +....|.
T Consensus        98 G~p~kpG  104 (330)
T 3ldh_A           98 GARQQEG  104 (330)
T ss_dssp             SCCCCSS
T ss_pred             CCCCCCC
Confidence            6544443

>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster}

Probab=95.92  E-value=0.0063  Score=65.10  Aligned_cols=76  Identities=25%  Similarity=0.383  Sum_probs=47.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC---------CHHHHHHHHHHhcC---C-cccccccc---cc--
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI---------DFERAKSLASDVMG---A-ARPFEDIL---NF--  359 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR---------t~~~a~~la~~~~~---~-~~~~~~l~---~~--  359 (454)
                      ..++||.++|.|+ ||+|++++..|++.|++|++.+|         +.++++++++++..   . ..++.+..   ..  
T Consensus        15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~D~~d~~~~~~~~~   94 (613)
T 3oml_A           15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDGASQRAADIVVDEIRKAGGEAVADYNSVIDGAKVIE   94 (613)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC--------------CHHHHHHHHHHTTCCEEECCCCGGGHHHHHC
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcccccccCCHHHHHHHHHHHHHhCCeEEEEeCCHHHHHHHHH
Confidence            5688999999997 59999999999999999999987         77777777766632   1 11222111   10  


Q ss_pred             ----CCCCccEEEECCCCC
Q 012866          360 ----QPEKGAILANATPLG  374 (454)
Q Consensus       360 ----~~~~~divInat~~g  374 (454)
                          .....|++||+....
T Consensus        95 ~~~~~~g~iDiLVnnAGi~  113 (613)
T 3oml_A           95 TAIKAFGRVDILVNNAGIL  113 (613)
T ss_dssp             ----------CEECCCCCC
T ss_pred             HHHHHCCCCcEEEECCCCC
Confidence                123579999987653

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.90  E-value=0.015  Score=56.72  Aligned_cols=72  Identities=19%  Similarity=0.206  Sum_probs=53.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcC-------Cc-ccc-ccccccCCCCccEEEECCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMG-------AA-RPF-EDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~-------~~-~~~-~~l~~~~~~~~divInat~~g  374 (454)
                      ++.|+|+|.+|.++++.|+..|. +|.+++++.++++..+.++..       .. +.. .+.+  ...++|+||.+.+..
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~--a~~~aD~Vi~~ag~~   78 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSYE--DMRGSDIVLVTAGIG   78 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCGG--GGTTCSEEEECCSCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCHH--HhCCCCEEEEeCCCC
Confidence            48899999999999999988787 799999999888776655432       11 111 3332  357899999998876


Q ss_pred             CCCC
Q 012866          375 MHPN  378 (454)
Q Consensus       375 ~~p~  378 (454)
                      ..|.
T Consensus        79 ~k~G   82 (308)
T 2d4a_B           79 RKPG   82 (308)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            6654

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.89  E-value=0.013  Score=57.23  Aligned_cols=72  Identities=19%  Similarity=0.186  Sum_probs=49.7

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC-------Cc-cccccccccCCCCccEEEECCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMG-------AA-RPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~-------~~-~~~~~l~~~~~~~~divInat~~g  374 (454)
                      ++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++..       .. +...+..+ ...++|+||.|.+..
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~-a~~~aDvVii~ag~~   80 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYG-PTEDSDVCIITAGLP   80 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSG-GGTTCSEEEECCCC-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHH-HhCCCCEEEECCCCC
Confidence            58999999999999999998886  899999999887765544431       11 11011222 457899999987654


Q ss_pred             CCC
Q 012866          375 MHP  377 (454)
Q Consensus       375 ~~p  377 (454)
                      -.|
T Consensus        81 ~kp   83 (314)
T 3nep_X           81 RSP   83 (314)
T ss_dssp             ---
T ss_pred             CCC
Confidence            444

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=95.89  E-value=0.005  Score=59.98  Aligned_cols=71  Identities=15%  Similarity=0.122  Sum_probs=48.1

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh----cCCc----ccccc---ccccCC--CCccEE
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV----MGAA----RPFED---ILNFQP--EKGAIL  367 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~----~~~~----~~~~~---l~~~~~--~~~div  367 (454)
                      .++++||.|+ |+.|++++..|.+.|++|+++.|+.++.++..+.+    +...    .++.+   +.+ ..  .+.|+|
T Consensus         4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~~~d~v   82 (341)
T 3enk_A            4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARIEKITGKTPAFHETDVSDERALAR-IFDAHPITAA   82 (341)
T ss_dssp             SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCTHHHHHHHHHHSCCCEEECCCTTCHHHHHH-HHHHSCCCEE
T ss_pred             CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchHHHHHHHHhhcCCCceEEEeecCCHHHHHH-HHhccCCcEE
Confidence            3578999995 89999999999999999999999766544443332    2211    12222   222 11  268999


Q ss_pred             EECCCC
Q 012866          368 ANATPL  373 (454)
Q Consensus       368 Inat~~  373 (454)
                      ||+...
T Consensus        83 ih~A~~   88 (341)
T 3enk_A           83 IHFAAL   88 (341)
T ss_dssp             EECCCC
T ss_pred             EECccc
Confidence            998764

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=95.88  E-value=0.002  Score=62.97  Aligned_cols=76  Identities=13%  Similarity=0.136  Sum_probs=49.9

Q ss_pred             CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-Cc--ccccc---ccccCCC--CccEEE
Q 012866          298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AA--RPFED---ILNFQPE--KGAILA  368 (454)
Q Consensus       298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~--~~~~~---l~~~~~~--~~divI  368 (454)
                      ...++++++||+|+ |++|++++..|.+.|++|+++.|+.+...++.+.+.. ..  .++.+   +.+ ...  +.|+||
T Consensus        15 ~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~-~~~~~~~D~vi   93 (330)
T 2pzm_A           15 VPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLER-AFDSFKPTHVV   93 (330)
T ss_dssp             CSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHH-HHHHHCCSEEE
T ss_pred             cccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHH-HHhhcCCCEEE
Confidence            35678899999997 8999999999999999999999965432211111110 11  12222   222 223  689999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      ++....
T Consensus        94 h~A~~~   99 (330)
T 2pzm_A           94 HSAAAY   99 (330)
T ss_dssp             ECCCCC
T ss_pred             ECCccC
Confidence            987643

>3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0

Probab=95.88  E-value=0.011  Score=55.69  Aligned_cols=46  Identities=11%  Similarity=0.097  Sum_probs=35.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~  346 (454)
                      +.+|+++|.|+ ||.|++++..|.+.|++|+++.|+. +..+.+.+.+
T Consensus         5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~~   52 (264)
T 3i4f_A            5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAMETMKETY   52 (264)
T ss_dssp             -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHT
T ss_pred             cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHH
Confidence            45789999996 6999999999999999998886654 4445554443

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.87  E-value=0.011  Score=59.04  Aligned_cols=71  Identities=23%  Similarity=0.266  Sum_probs=52.8

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc--c----ccc---cCCCCccEEEEC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE--D----ILN---FQPEKGAILANA  370 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~--~----l~~---~~~~~~divIna  370 (454)
                      .|++|||+|+|++|.+++..++..|+ +|+++.++.++.+ +++++|... ++..  +    +.+   .....+|+++++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~-~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~  260 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRR-LAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIEC  260 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHH-HHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHH-HHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEEC
Confidence            47899999999999999999999999 8999999988854 777887642 2221  1    111   112368999999


Q ss_pred             CCC
Q 012866          371 TPL  373 (454)
Q Consensus       371 t~~  373 (454)
                      ++.
T Consensus       261 ~G~  263 (370)
T 4ej6_A          261 AGV  263 (370)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            863

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.86  E-value=0.021  Score=55.89  Aligned_cols=74  Identities=20%  Similarity=0.348  Sum_probs=53.7

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC------Cc--cccccccccCCCCccEEEECCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMG------AA--RPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~------~~--~~~~~l~~~~~~~~divInat~  372 (454)
                      ..++.|+|+|.+|.++++.|+..|.  +|.+++++.++++..+.++..      ..  +..++ .+ .+.++|+||.+.+
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~-~~-a~~~aDvVvi~ag   83 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGE-YS-DCHDADLVVICAG   83 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECC-GG-GGTTCSEEEECCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCC-HH-HhCCCCEEEECCC
Confidence            3589999999999999999998775  899999999888765544421      01  11122 22 3678999999998


Q ss_pred             CCCCCC
Q 012866          373 LGMHPN  378 (454)
Q Consensus       373 ~g~~p~  378 (454)
                      .+..|.
T Consensus        84 ~~~~~g   89 (317)
T 3d0o_A           84 AAQKPG   89 (317)
T ss_dssp             CCCCTT
T ss_pred             CCCCCC
Confidence            765543

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=95.86  E-value=0.01  Score=59.60  Aligned_cols=83  Identities=22%  Similarity=0.256  Sum_probs=60.8

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCC---eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGA---RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~---~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ...+|+|||+ |-+|+.++..+..+|+   .|++++++....       +..   ++.     +..+|+||||...|- +
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~-------g~~---~~~-----i~~aDivIn~vlig~-~  276 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSR-------GGP---FDE-----IPQADIFINCIYLSK-P  276 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTT-------CSC---CTH-----HHHSSEEEECCCCCS-S
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccccc-------CCc---hhh-----HhhCCEEEECcCcCC-C
Confidence            3568999999 9999999999999998   899999875221       221   232     245899999998853 2


Q ss_pred             CCCCCCCChhcc----cCCcEEEEEecCC
Q 012866          378 NTDRVPVSEETL----RDYQLVFDAVYTP  402 (454)
Q Consensus       378 ~~~~~~i~~~~l----~~~~~v~D~~y~P  402 (454)
                        .+..+..+.+    +++.+++|+.-.+
T Consensus       277 --aP~Lvt~e~v~~m~k~gsVIVDVA~D~  303 (394)
T 2qrj_A          277 --IAPFTNMEKLNNPNRRLRTVVDVSADT  303 (394)
T ss_dssp             --CCCSCCHHHHCCTTCCCCEEEETTCCT
T ss_pred             --CCcccCHHHHhcCcCCCeEEEEEecCC
Confidence              2334666654    6679999997654

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.85  E-value=0.0086  Score=58.89  Aligned_cols=40  Identities=18%  Similarity=0.288  Sum_probs=35.1

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~  344 (454)
                      .++.|||+|.+|.+++..|++.|.+|++++|+ ++.+++.+
T Consensus         4 mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~   43 (335)
T 3ghy_A            4 TRICIVGAGAVGGYLGARLALAGEAINVLARG-ATLQALQT   43 (335)
T ss_dssp             CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH-HHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh-HHHHHHHH
Confidence            57999999999999999999999999999996 66666643

>3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV}

Probab=95.85  E-value=0.011  Score=56.11  Aligned_cols=39  Identities=33%  Similarity=0.475  Sum_probs=35.0

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ++++|+++|.|+ ||+|++++..|++.|++|++++|+.++
T Consensus         3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (274)
T 3e03_A            3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVA   42 (274)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSC
T ss_pred             CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchh
Confidence            467899999996 599999999999999999999998653

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.85  E-value=0.021  Score=55.29  Aligned_cols=118  Identities=17%  Similarity=0.115  Sum_probs=73.3

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC-------c-cc-cccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA-------A-RP-FEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~-------~-~~-~~~l~~~~~~~~divInat~~  373 (454)
                      ||.|||||+.|.++++.|+..+.  ++.+++.+.++++..+.++...       . +. -.+.+  .++++|+||.+...
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~--~~~~aDvVvitAG~   79 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS--LLKGSEIIVVTAGL   79 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGG--GGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHH--HhCCCCEEEEecCC
Confidence            58999999999999999998775  8999999998887776665421       0 00 11222  35789999987765


Q ss_pred             CCCCCCCCCC-CCh------h----c--ccCCcEEEEEecCCCCCHHHHHHHHCCCc---eeccHHHH
Q 012866          374 GMHPNTDRVP-VSE------E----T--LRDYQLVFDAVYTPRKTRLLKDAEAAGAI---IVSGVEMF  425 (454)
Q Consensus       374 g~~p~~~~~~-i~~------~----~--l~~~~~v~D~~y~P~~T~ll~~A~~~G~~---~~~Gl~ml  425 (454)
                      .-.|..+... +..      +    .  ..++.+ +=++-||.++--.-..+..|..   ++.+-.+|
T Consensus        80 prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~ai-vlvvsNPvd~~t~i~~k~sg~p~~rvig~gT~L  146 (294)
T 2x0j_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESK-ILVVTNPMDVMTYIMWKESGKPRNEVFGMGNQL  146 (294)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCE-EEECSSSHHHHHHHHHHHSSCCTTSEEECCHHH
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceE-EEEecCcchhhHHhhHHHcCCChhhEEEeeeEE
Confidence            4444322111 100      0    0  124454 5567799975544556667753   44443433

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.83  E-value=0.022  Score=56.29  Aligned_cols=70  Identities=20%  Similarity=0.198  Sum_probs=51.7

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc------cccc-CCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED------ILNF-QPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~------l~~~-~~~~~divInat~  372 (454)
                      .+++++|+|+ ||+|++++..++..|++|+++.|+.++.+ ++++++... ++..+      +.+. .-..+|++||++.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G  248 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQK-IVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  248 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHH-HHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCC
Confidence            4789999997 99999999999999999999999998877 556676532 22211      1110 1136899999875

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.83  E-value=0.018  Score=57.47  Aligned_cols=70  Identities=19%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc---ccccCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED---ILNFQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~---l~~~~~~~~divInat~~  373 (454)
                      .|.+|||+|+|++|.+++..++..|++|+++.++.++.+. +++++... ++..+   +.+ ....+|++|++++.
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~-a~~lGa~~vi~~~~~~~~~~-~~~g~Dvvid~~g~  267 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREA-AKALGADEVVNSRNADEMAA-HLKSFDFILNTVAA  267 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHH-HHHHTCSEEEETTCHHHHHT-TTTCEEEEEECCSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH-HHHcCCcEEeccccHHHHHH-hhcCCCEEEECCCC
Confidence            4789999999999999999888999999999999888654 45677542 22221   222 12568999999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.83  E-value=0.0098  Score=58.65  Aligned_cols=70  Identities=27%  Similarity=0.308  Sum_probs=50.8

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc---cccc----cCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE---DILN----FQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~---~l~~----~~~~~~divInat~  372 (454)
                      .+++++|+|+ ||+|++++..++..|++|+++.|+.++.+ ++++++... +++.   ++.+    .....+|++||++.
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~-~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  247 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEE-LFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSV  247 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHH-HHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHH-HHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCC
Confidence            4789999998 89999999999999999999999988874 456666432 2221   1111    00116899999886

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.82  E-value=0.017  Score=55.44  Aligned_cols=40  Identities=30%  Similarity=0.521  Sum_probs=35.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|+++.|+.++
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~   83 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEG   83 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence            3578999999996 699999999999999999999998764

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=95.81  E-value=0.015  Score=63.45  Aligned_cols=39  Identities=13%  Similarity=0.164  Sum_probs=36.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      ++|.|||+|-||.+++..|++.|++|++++|+++++++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~  351 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAG  351 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence            679999999999999999999999999999999887764

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.80  E-value=0.009  Score=58.58  Aligned_cols=71  Identities=14%  Similarity=0.046  Sum_probs=47.4

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH----HHHHHHHHHh--cCCc--ccccc---ccccCCC--CccEE
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF----ERAKSLASDV--MGAA--RPFED---ILNFQPE--KGAIL  367 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~----~~a~~la~~~--~~~~--~~~~~---l~~~~~~--~~div  367 (454)
                      ..++|+|+|+ |..|++++..|.+.|.+|+++.|+.    ++++.+....  +...  .++.+   +.+ ...  ++|+|
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~-~~~~~~~d~V   87 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEK-ILKEHEIDIV   87 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHH-HHHHTTCCEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHH-HHhhCCCCEE
Confidence            3578999997 8999999999999999999999976    5555332221  1111  22222   222 234  78999


Q ss_pred             EECCCC
Q 012866          368 ANATPL  373 (454)
Q Consensus       368 Inat~~  373 (454)
                      |++.+.
T Consensus        88 i~~a~~   93 (346)
T 3i6i_A           88 VSTVGG   93 (346)
T ss_dssp             EECCCG
T ss_pred             EECCch
Confidence            998764

>2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus}

Probab=95.79  E-value=0.0072  Score=54.37  Aligned_cols=68  Identities=22%  Similarity=0.207  Sum_probs=49.4

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---ccccCC---CCccEEEECCCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNFQP---EKGAILANATPLG  374 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~~~---~~~divInat~~g  374 (454)
                      |+++|.|+ ||.|++++..|.+.  +|++++|+.++.+++.++++...  .++.+   +.. ..   .+.|+|||+....
T Consensus         1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~id~vi~~ag~~   77 (207)
T 2yut_A            1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGALAELAREVGARALPADLADELEAKA-LLEEAGPLDLLVHAVGKA   77 (207)
T ss_dssp             CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHHHHHHHHHTCEECCCCTTSHHHHHH-HHHHHCSEEEEEECCCCC
T ss_pred             CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHHHHHHHhccCcEEEeeCCCHHHHHH-HHHhcCCCCEEEECCCcC
Confidence            46899986 79999999999988  99999999999888887664311  22222   222 11   2689999987643

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=95.79  E-value=0.012  Score=57.86  Aligned_cols=71  Identities=20%  Similarity=0.149  Sum_probs=52.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc--cccc-c--CCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE--DILN-F--QPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~--~l~~-~--~~~~~divInat~~  373 (454)
                      .+++|+|+|+|++|.+++..++..|++|+++.|+.++.+.+ ++++... ++..  ++.+ .  ....+|++|++++.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~  240 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA-KELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVS  240 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCC
Confidence            47899999999999999999999999999999998887654 5676532 2222  1111 0  01468999999863

>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0

Probab=95.79  E-value=0.015  Score=55.30  Aligned_cols=47  Identities=38%  Similarity=0.613  Sum_probs=39.1

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ..+++|+++|.|+ ||+|++++..|++.|++|++++|+ ++.+++++++
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~-~~~~~~~~~~   74 (273)
T 3uf0_A           27 FSLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRT-DGVKEVADEI   74 (273)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS-THHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCH-HHHHHHHHHH
Confidence            4578999999996 699999999999999999999987 4455555554

>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}

Probab=95.79  E-value=0.011  Score=54.87  Aligned_cols=46  Identities=24%  Similarity=0.424  Sum_probs=38.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~  346 (454)
                      +++|+++|.|+ ||.|++++..|.+.|++|+++ .|+.++.+++.+++
T Consensus         3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~~~~~~~~~   50 (247)
T 2hq1_A            3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTSLDATAEEF   50 (247)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSHHHHHHHHH
T ss_pred             CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHHHHHHHHHH
Confidence            46789999996 699999999999999999888 77877777766554

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.78  E-value=0.019  Score=56.53  Aligned_cols=71  Identities=23%  Similarity=0.227  Sum_probs=51.7

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccc-ccc----ccc-CCCCccEEEECCCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPF-EDI----LNF-QPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~-~~l----~~~-~~~~~divInat~~  373 (454)
                      .|++|||+|+ |++|.+++..++..|++|+++.|+.++.+ ++++++... ++. +++    .+. .-..+|++|+|+..
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~-~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATE-FVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHH-HHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH-HHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch
Confidence            5789999998 99999999999999999999999988865 556676542 111 121    110 12368999999863

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=95.77  E-value=0.0086  Score=58.78  Aligned_cols=108  Identities=14%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             ceEEEEccchhHH-HHHHHHHHCCCe-EEEEeCCHHHHHHHHHHhcC-C-ccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGR-ALAFGAKSRGAR-VVIFDIDFERAKSLASDVMG-A-ARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       304 k~vlViGaGG~ar-ai~~~L~~~G~~-v~i~nRt~~~a~~la~~~~~-~-~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      -++.|||+|.++. ..+.+|...|++ +.|++|+.+++++++++++. . ..+++++-+  -.+.|+|+.|||.....  
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~--~~~~D~V~i~tp~~~h~--   80 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLIT--DASIDLIACAVIPCDRA--   80 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHT--CTTCCEEEECSCGGGHH--
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhh--CCCCCEEEEeCChhhHH--
Confidence            4799999998875 566777777886 57999999999999999843 2 223444321  24689999999864321  


Q ss_pred             CCCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceecc
Q 012866          380 DRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSG  421 (454)
Q Consensus       380 ~~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~G  421 (454)
                         ++-...++.+. ++++   +|.-      ..+.+.|++.|..+.-|
T Consensus        81 ---~~~~~al~aGkhVl~E---KP~a~~~~e~~~l~~~a~~~g~~~~v~  123 (336)
T 2p2s_A           81 ---ELALRTLDAGKDFFTA---KPPLTTLEQLDAVQRRVAETGRKFAVY  123 (336)
T ss_dssp             ---HHHHHHHHTTCEEEEC---SSCCSCHHHHHHHHHHHHHHCCCEEEC
T ss_pred             ---HHHHHHHHCCCcEEEe---CCCCCCHHHHHHHHHHHHHcCCEEEEe
Confidence               12233455554 4443   4532      34666777888776544

>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}

Probab=95.77  E-value=0.011  Score=57.84  Aligned_cols=74  Identities=16%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-----HHHHHHHHHHh---cCCc----ccccc---cccc-----
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-----FERAKSLASDV---MGAA----RPFED---ILNF-----  359 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-----~~~a~~la~~~---~~~~----~~~~~---l~~~-----  359 (454)
                      +.+|+++|.|+ ||.|++++..|.+.|++|++..|+     .++++++++.+   +...    .++.+   +.+.     
T Consensus         3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~~~~~l~~~~~~~~~~~~~~~~Dvtd~~~v~~~~~~~~   82 (324)
T 3u9l_A            3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNASNVEAIAGFARDNDVDLRTLELDVQSQVSVDRAIDQII   82 (324)
T ss_dssp             --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHHHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHH
Confidence            34789999996 799999999999999999987665     56666665543   2221    12211   1110     


Q ss_pred             -CCCCccEEEECCCCC
Q 012866          360 -QPEKGAILANATPLG  374 (454)
Q Consensus       360 -~~~~~divInat~~g  374 (454)
                       .....|+|||+...+
T Consensus        83 ~~~g~iD~lVnnAG~~   98 (324)
T 3u9l_A           83 GEDGRIDVLIHNAGHM   98 (324)
T ss_dssp             HHHSCCSEEEECCCCC
T ss_pred             HHcCCCCEEEECCCcC
Confidence             113689999988654

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.76  E-value=0.025  Score=56.11  Aligned_cols=92  Identities=18%  Similarity=0.105  Sum_probs=61.6

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccc--ccc----ccc-CCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPF--EDI----LNF-QPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~--~~l----~~~-~~~~~divInat~~  373 (454)
                      .|++|||+|+|++|.+++..++..|++|+++.++.++.+. +++++... ++.  +++    .+. .-..+|+++++++ 
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~-~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-  266 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDR-AFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-  266 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHH-HHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHH-HHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-
Confidence            5789999999999999999999999999999999888665 67777642 221  111    110 1236899999986 


Q ss_pred             CCCCCCCCCCCChhcccCCcEEEEEec
Q 012866          374 GMHPNTDRVPVSEETLRDYQLVFDAVY  400 (454)
Q Consensus       374 g~~p~~~~~~i~~~~l~~~~~v~D~~y  400 (454)
                      +.  .   ..-..+.+.++..++.+..
T Consensus       267 ~~--~---~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          267 GA--G---LGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             SS--C---HHHHHHHEEEEEEEEEECC
T ss_pred             hH--H---HHHHHHHhhcCCEEEEEec
Confidence            21  0   0111234666666666643

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.74  E-value=0.02  Score=55.96  Aligned_cols=73  Identities=14%  Similarity=0.063  Sum_probs=49.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH----HHHHHHHHh-----c-CCc--ccccc---ccccCCCCc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE----RAKSLASDV-----M-GAA--RPFED---ILNFQPEKG  364 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~----~a~~la~~~-----~-~~~--~~~~~---l~~~~~~~~  364 (454)
                      ..+++|||+|+ |..|++++..|.+.|.+|+++.|+..    ..+.+...+     . ...  .++.+   +.+ ...++
T Consensus        23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~  101 (351)
T 3ruf_A           23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQ-VMKGV  101 (351)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHH-HTTTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHH-HhcCC
Confidence            45789999995 88999999999999999999999543    333332211     1 111  12222   333 34578


Q ss_pred             cEEEECCCCC
Q 012866          365 AILANATPLG  374 (454)
Q Consensus       365 divInat~~g  374 (454)
                      |+||++....
T Consensus       102 d~Vih~A~~~  111 (351)
T 3ruf_A          102 DHVLHQAALG  111 (351)
T ss_dssp             SEEEECCCCC
T ss_pred             CEEEECCccC
Confidence            9999988653

>2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2

Probab=95.73  E-value=0.014  Score=54.05  Aligned_cols=44  Identities=18%  Similarity=0.325  Sum_probs=39.7

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCC-------eEEEEeCCHHHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGA-------RVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~-------~v~i~nRt~~~a~~la~~~  346 (454)
                      +|+++|.|+ ||.|++++..|.+.|+       +|++++|+.++.+++.+++
T Consensus         2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~   53 (244)
T 2bd0_A            2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLEC   53 (244)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHHHHHHHHH
Confidence            578999995 7999999999999999       9999999999988887766

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.72  E-value=0.015  Score=57.53  Aligned_cols=71  Identities=15%  Similarity=0.195  Sum_probs=51.2

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-----ccc-ccccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-----RPF-EDILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-----~~~-~~l~~~~~~~~divInat~  372 (454)
                      .+++|.|+|+ |.+|.++++.+..+|.  +|.+++++.++++..+.++....     +.+ .+..+ ..+++|+||.|..
T Consensus         7 ~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~-al~dADvVvitaG   85 (343)
T 3fi9_A            7 TEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKE-ALTDAKYIVSSGG   85 (343)
T ss_dssp             CSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHH-HHTTEEEEEECCC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHH-HhCCCCEEEEccC
Confidence            4678999997 9999999999999985  89999999998887655543211     111 12222 3578999998754


Q ss_pred             C
Q 012866          373 L  373 (454)
Q Consensus       373 ~  373 (454)
                      .
T Consensus        86 ~   86 (343)
T 3fi9_A           86 A   86 (343)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=95.70  E-value=0.015  Score=55.02  Aligned_cols=48  Identities=27%  Similarity=0.423  Sum_probs=39.6

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEe-CCHHHHHHHHHHh
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFD-IDFERAKSLASDV  346 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~n-Rt~~~a~~la~~~  346 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|++.. |+.++++++++++
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~   63 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEI   63 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHH
Confidence            4578999999996 5999999999999999988865 5667777776655

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=95.69  E-value=0.0035  Score=59.09  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=31.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC----CeEEEEeCCHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG----ARVVIFDIDFER  338 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G----~~v~i~nRt~~~  338 (454)
                      .++.|||+|.+|.+++..|.+.|    .+|++++|+.++
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~   43 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN   43 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc
Confidence            47999999999999999999988    589999999765

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.69  E-value=0.0026  Score=62.23  Aligned_cols=67  Identities=21%  Similarity=0.340  Sum_probs=44.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--ccccc---ccccCCCCccEEEECCC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFED---ILNFQPEKGAILANATP  372 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~~---l~~~~~~~~divInat~  372 (454)
                      ...++++|||+|+ |+.|++++..|.+.|++|+++.|+.++       -+...  .++.+   +.+ .+.+.|+||++.+
T Consensus        15 ~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-------~~~~~~~~Dl~d~~~~~~-~~~~~d~vih~A~   86 (347)
T 4id9_A           15 VPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-------TGGEEVVGSLEDGQALSD-AIMGVSAVLHLGA   86 (347)
T ss_dssp             ------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-------SCCSEEESCTTCHHHHHH-HHTTCSEEEECCC
T ss_pred             cccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-------CCccEEecCcCCHHHHHH-HHhCCCEEEECCc
Confidence            4567899999997 899999999999999999999998654       11111  12222   222 2457899999876


Q ss_pred             C
Q 012866          373 L  373 (454)
Q Consensus       373 ~  373 (454)
                      .
T Consensus        87 ~   87 (347)
T 4id9_A           87 F   87 (347)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium}

Probab=95.68  E-value=0.012  Score=57.46  Aligned_cols=47  Identities=40%  Similarity=0.661  Sum_probs=40.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC----------HHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID----------FERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt----------~~~a~~la~~~  346 (454)
                      .+++|++||.|+ ||+|++++..|++.|++|++++|+          .++++++++++
T Consensus        24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~   81 (322)
T 3qlj_A           24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPASGGSAAQSVVDEI   81 (322)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBTCTTSHHHHHHHHH
T ss_pred             ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCcccccccccccHHHHHHHHHHH
Confidence            477899999996 699999999999999999999998          67777777665

>1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A*

Probab=95.67  E-value=0.013  Score=57.43  Aligned_cols=72  Identities=15%  Similarity=0.080  Sum_probs=50.0

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH----HHHHHHHHHhc----CC--c--ccccc---ccccCCCCc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF----ERAKSLASDVM----GA--A--RPFED---ILNFQPEKG  364 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~----~~a~~la~~~~----~~--~--~~~~~---l~~~~~~~~  364 (454)
                      +.++++||+|+ |+.|++++..|.+.|++|+++.|+.    ++.+.+.+.+.    ..  .  .++.+   +.+ ...+.
T Consensus        25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~-~~~~~  103 (352)
T 1sb8_A           25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRNLDEVRSLVSEKQWSNFKFIQGDIRNLDDCNN-ACAGV  103 (352)
T ss_dssp             HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHSCHHHHTTEEEEECCTTSHHHHHH-HHTTC
T ss_pred             ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchhhHHHHhhhcccccCCceEEEECCCCCHHHHHH-HhcCC
Confidence            45789999997 8999999999999999999999965    34455544331    11  1  12222   222 23578


Q ss_pred             cEEEECCCC
Q 012866          365 AILANATPL  373 (454)
Q Consensus       365 divInat~~  373 (454)
                      |+||++...
T Consensus       104 d~vih~A~~  112 (352)
T 1sb8_A          104 DYVLHQAAL  112 (352)
T ss_dssp             SEEEECCSC
T ss_pred             CEEEECCcc
Confidence            999998864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.64  E-value=0.027  Score=55.69  Aligned_cols=70  Identities=16%  Similarity=0.194  Sum_probs=51.7

Q ss_pred             CCceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc------cccc-CCCCccEEEECCC
Q 012866          302 AGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED------ILNF-QPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~------l~~~-~~~~~divInat~  372 (454)
                      .+++|+|+| +||+|++++..++..|++|+++.|+.++.+.+ ++++... ++..+      +.+. ....+|++||++.
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G  240 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA-EKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG  240 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH-HHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH-HHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCC
Confidence            478999999 69999999999999999999999999887665 6666532 22211      1110 1135899999986

>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}

Probab=95.64  E-value=0.015  Score=54.96  Aligned_cols=49  Identities=18%  Similarity=0.230  Sum_probs=40.8

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHHhc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID---FERAKSLASDVM  347 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt---~~~a~~la~~~~  347 (454)
                      ..+++|++||.|+ ||+|++++..|++.|++|+++.|+   .++++++++++.
T Consensus         7 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~   59 (262)
T 3ksu_A            7 HDLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDTANKLKDELE   59 (262)
T ss_dssp             SCCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHHHHHHHHHHH
Confidence            4578999999996 699999999999999999998664   567777777663

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=95.62  E-value=0.019  Score=59.12  Aligned_cols=74  Identities=18%  Similarity=0.076  Sum_probs=49.7

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .+++|++|+|+|+|..|.+.+..|.+.|++|+|++.+.. ..+++++..+.... ..+.....+.++|+||-+|..
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~-~~~~~~~~l~~~~lVi~at~~   82 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLV-EGPFDETLLDSCWLAIAATDD   82 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEE-ESSCCGGGGTTCSEEEECCSC
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEE-ECCCCccccCCccEEEEcCCC
Confidence            467899999999999999999999999999999998643 33344332111111 011111124568999887754

>3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis}

Probab=95.61  E-value=0.0085  Score=56.86  Aligned_cols=46  Identities=26%  Similarity=0.352  Sum_probs=39.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASD  345 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~  345 (454)
                      .+++|+++|.|+ ||.|++++..|.+.|++|++++|+.++.+++.+.
T Consensus        31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~   77 (279)
T 3ctm_A           31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPADEKAEHL   77 (279)
T ss_dssp             CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCHHHHHHH
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH
Confidence            467899999995 6999999999999999999999987766665544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	454
d1sfla_	236	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	4e-33
d1gqna_	252	c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase	8e-32
d1vi2a2	102	c.58.1.5 (A:5-106) Putative shikimate dehydrogenas	5e-28
d1nvta2	110	c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE	1e-27
d1p77a2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	4e-27
d1npya2	102	c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like	6e-26
d1nyta2	101	c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE	1e-25
d1nyta1	170	c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE	1e-22
d1npya1	167	c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like	2e-21
d1vi2a1	182	c.2.1.7 (A:107-288) Putative shikimate dehydrogena	7e-21
d1p77a1	171	c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE	9e-19
d1nvta1	177	c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE	8e-18
d1nffa_	244	c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycob	7e-05
d1ydea1	250	c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase	1e-04
d1e5qa1	182	c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase	1e-04
d1k2wa_	256	c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s	1e-04
d1jaya_	212	c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase	2e-04
d1xhla_	274	c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorh	2e-04
d1hdca_	254	c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydr	3e-04
d1ooea_	235	c.2.1.2 (A:) Dihydropteridin reductase (pteridine	4e-04
d1hxha_	253	c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydroge	5e-04
d1bdba_	276	c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehy	8e-04
d1pr9a_	244	c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie	8e-04
d2ae2a_	259	c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datu	0.001
d1fmca_	255	c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase	0.001
d1yb1a_	244	c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase	0.001
d1spxa_	264	c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato	0.001
d1fjha_	257	c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase	0.001
d1gega_	255	c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Kl	0.002
d2a4ka1	241	c.2.1.2 (A:2-242) beta-keto acyl carrier protein r	0.002
d1pjca1	168	c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phorm	0.002
d1zema1	260	c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconoba	0.002
d1cyda_	242	c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul	0.002
d2ag5a1	245	c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR fami	0.002
d1yxma1	297	c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re	0.003
d1ulsa_	242	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.003
d2bgka1	268	c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de	0.003
d1iy8a_	258	c.2.1.2 (A:) Levodione reductase {Corynebacterium	0.003
d1q7ba_	243	c.2.1.2 (A:) beta-keto acyl carrier protein reduct	0.003
d1xkqa_	272	c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh	0.003
d1w6ua_	294	c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondr	0.004
d1vl8a_	251	c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga	0.004
d1uwka_	554	e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomona	0.004

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 236

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  123 bits (309), Expect = 4e-33
 Identities = 38/168 (22%), Positives = 67/168 (39%), Gaps = 8/168 (4%)

Query: 7   RPKWAGGLYEGDEHKRLEAL-HLAEDLGADYVDFELKVASNILGKQ---YSSHQSGTRFI 62
           R K  GG  +      L  +  LA   G D +D E +   +I   Q       Q     I
Sbjct: 68  RTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVI 127

Query: 63  VSCNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSHC----QVPI 118
           +S +    TP  ++L ++  +MQ    + +KL    ++  ++  + Q +S         +
Sbjct: 128 ISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKV 187

Query: 119 IAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKV 166
           +  S+ + GL+S+     F GAL YG +      G   V  L+    +
Sbjct: 188 VGISMSKLGLISRTAQGVFGGALTYGCIGEPQAPGQIDVTDLKAQVTL 235

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} Length = 252

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

 Score =  119 bits (300), Expect = 8e-32
 Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 7/169 (4%)

Query: 7   RPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQY-SSHQSGTRFIVS 64
           R    GG         L     A D G  D +D EL      +      +H      ++S
Sbjct: 82  RSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMS 141

Query: 65  CNLDCETPSEEDLGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPII 119
            +   +TPS E++   + +MQA GADI K+        ++  +              P+I
Sbjct: 142 NHDFHQTPSAEEMVSRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVI 201

Query: 120 AYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLGLPTVESLRQTYKVEH 168
             S+ + G++S+L    F  A  +G++K     G   V  LR    + H
Sbjct: 202 TMSMAKEGVISRLAGEVFGSAATFGAVKQASAPGQIAVNDLRSVLMILH 250

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score =  104 bits (261), Expect = 5e-28
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)

Query: 171 ADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGF 228
           A  ++ GL++ P+ HS  P + N           Y+   VD            +    G 
Sbjct: 1   AKYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGT 60

Query: 229 SVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 272
            V  P K+   ++ DE+ P A+ + A+NTI+    DG L GYNT
Sbjct: 61  GVSMPNKQLACEYVDELTPAAKLVGAINTIVND--DGYLRGYNT 102

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 110

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  104 bits (259), Expect = 1e-27
 Identities = 48/106 (45%), Positives = 60/106 (56%), Gaps = 4/106 (3%)

Query: 169 INADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVP--MFVDDLKKFFSTYSSPDFA 226
           INA TKV GLI  PV HS  PI+HN  F+    N +YV   +  ++LK       +    
Sbjct: 7   INAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIV 66

Query: 227 GFSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 272
           GF+V  P+K  +MK+ DE+   AQ I AVNTI     DGK IGYNT
Sbjct: 67  GFNVTIPHKIEIMKYLDEIDKDAQLIGAVNTIKIE--DGKAIGYNT 110

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score =  102 bits (255), Expect = 4e-27
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 231
            ++ +   P+  SK P++ N      +    Y+    D    ++    +      G ++ 
Sbjct: 2   DLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNIT 61

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 272
            P+KE   +  DE    A+   A NT+ +   DGKL   NT
Sbjct: 62  SPFKERAYQLADEYSQRAKLAEACNTLKKLD-DGKLYADNT 101

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 102

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 98.9 bits (246), Expect = 6e-26
 Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 169 INADTKVF-GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAG 227
           IN DT++   L  +P   + G   HN  +  +  N IY      D++       +    G
Sbjct: 2   INKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRG 59

Query: 228 FSVGFPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 272
            +V  P+KE  M F DE+HP AQAI +VNTI+    +G L  YNT
Sbjct: 60  CAVSMPFKETCMPFLDEIHPSAQAIESVNTIVND--NGFLRAYNT 102

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 101

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score = 98.2 bits (244), Expect = 1e-25
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 174 KVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVG 231
           + + +   P+ HSK P +H    + +N    Y  +     D     + + S    G +V 
Sbjct: 2   ETYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVT 61

Query: 232 FPYKEAVMKFCDEVHPLAQAIAAVNTIIRRPSDGKLIGYNT 272
            P+KE      DE+   A    AVNT++R   DG+L+G NT
Sbjct: 62  VPFKEEAFARADELTERAALAGAVNTLMRLE-DGRLLGDNT 101

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

 Score = 92.3 bits (228), Expect = 1e-22
 Identities = 37/167 (22%), Positives = 60/167 (35%), Gaps = 4/167 (2%)

Query: 289 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 348
           G  +          G   +L GAGGA R +     S    V I +    RA+ LA     
Sbjct: 4   GLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAH 63

Query: 349 AARPFEDILNFQPEKGA-ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRL 407
                   ++        ++ NAT  G+  +   +P S   +      +D  Y   KT  
Sbjct: 64  TGSIQALSMDELEGHEFDLIINATSSGISGDIPAIPSS--LIHPGIYCYDMFYQKGKTPF 121

Query: 408 LKDAEAAGAIIVS-GVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
           L   E  G+   + G+ M + QA   F L+ G     E + + +  +
Sbjct: 122 LAWCEQRGSKRNADGLGMLVAQAAHAFLLWHGVLPDVEPVIKQLQEE 168

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} Length = 167

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

 Score = 88.4 bits (218), Expect = 2e-21
 Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 9/163 (5%)

Query: 289 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVM 347
                   +      ++ V  G+GG  +A+    K+ G  ++ I+  + +  + LA+   
Sbjct: 4   AIVKLIEKYHLNKNAKVIVH-GSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYG 62

Query: 348 GAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV--SEETLRDYQLVFDAVYTPRKT 405
            A     +             N T +GM    + + +   +  + +  + FD V  P +T
Sbjct: 63  YAYINSLENQQADILV-----NVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVET 117

Query: 406 RLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 448
             ++ A+A G   +SG  + + QA+ QF L+T +    E + E
Sbjct: 118 PFIRYAQARGKQTISGAAVIVLQAVEQFELYTHQRPSDELIAE 160

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

 Score = 87.7 bits (216), Expect = 7e-21
 Identities = 46/175 (26%), Positives = 75/175 (42%), Gaps = 13/175 (7%)

Query: 289 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRG-ARVVIFDIDFERAKSLASDVM 347
           G+       G  + G+  VL GAGGA  A+       G   + +F+   E      +   
Sbjct: 4   GHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQ 63

Query: 348 GAARPFEDILNFQ-----------PEKGAILANATPLGMHPNTDRVPVSEETLRDYQL-V 395
                 + ++                   IL N T +GM P  +   V++ +L    L V
Sbjct: 64  RVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGMKPLENESLVNDISLLHPGLLV 123

Query: 396 FDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV 450
            + VY P  T+LL+ A+ AG   + G  M L Q   QF L+TGK+ P E++++++
Sbjct: 124 TECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM 178

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

 Score = 81.1 bits (199), Expect = 9e-19
 Identities = 31/163 (19%), Positives = 56/163 (34%), Gaps = 5/163 (3%)

Query: 289 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG 348
           G              +  ++ GAGGA + +          +V+ +  F + K LA     
Sbjct: 4   GLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQP 63

Query: 349 AARPFEDILNFQPEKGA-ILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYT-PRKTR 406
                   ++  P +   ++ NAT  G+        V  E L+     +D  Y     T 
Sbjct: 64  YGNIQAVSMDSIPLQTYDLVINATSAGLSG--GTASVDAEILKLGSAFYDMQYAKGTDTP 121

Query: 407 LLKDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE 448
            +   ++ G   +  G  M + QA   F+L+ G       + E
Sbjct: 122 FIALCKSLGLTNVSDGFGMLVAQAAHSFHLWRGVMPDFVSVYE 164

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 177

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 78.5 bits (192), Expect = 8e-18
 Identities = 46/171 (26%), Positives = 76/171 (44%), Gaps = 6/171 (3%)

Query: 289 GYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-----RVVIFDIDFERAKSLA 343
           G +         +  +  V+ GAGGA RA+AF            R V       +  +  
Sbjct: 4   GARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAKDNNIIIANRTVEKAEALAKEIAEK 63

Query: 344 SDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETL-RDYQLVFDAVYTP 402
            +           L+   +   I+ NATP+GM+PN D  P+ +    R+  +V D +Y P
Sbjct: 64  LNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNP 123

Query: 403 RKTRLLKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMREIVLAK 453
            +T LLK+A+   A  ++G+ M + Q    F ++TG E   E M+  ++ K
Sbjct: 124 LETVLLKEAKKVNAKTINGLGMLIYQGAVAFKIWTGVEPNIEVMKNAIIDK 174

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.0 bits (98), Expect = 7e-05
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
           L G+   V  GA G G +      + GA+VV  DI  E  K++A+++  AAR   
Sbjct: 4   LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVH 58

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 28/135 (20%), Positives = 49/135 (36%), Gaps = 13/135 (9%)

Query: 298 GSPLAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDI 356
           G+  AG+ + V  G  G G  +     + GARVVI D D    ++L  ++ GA     D+
Sbjct: 1   GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDV 60

Query: 357 LNFQPEKGA---ILANATPL-----GMHPNTDRVPVSEETLRDYQLVFD----AVYTPRK 404
                 K      +     L         +       E + + ++ + +      YT  K
Sbjct: 61  TQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTK 120

Query: 405 TRLLKDAEAAGAIIV 419
             L    ++ G +I 
Sbjct: 121 LALPYLRKSQGNVIN 135

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 20/110 (18%), Positives = 38/110 (34%)

Query: 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQP 361
           A +  ++ G+G   R         G +V +     E AK L++ V  +     D+ +   
Sbjct: 1   ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAA 60

Query: 362 EKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDA 411
               +  +   + + P T    V +  +R  + V    Y       L  A
Sbjct: 61  LDAEVAKHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQA 110

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
           L G+   +   A G GRA A      GARV I DI+ E A++ A+++  AA    
Sbjct: 3   LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIA 57

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 12/44 (27%), Positives = 22/44 (50%)

Query: 307 VLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
           +L G G  G+ LA    + G  +V+     E+A++ A++    A
Sbjct: 5   LLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIA 48

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} Length = 274

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNF 359
            +G+ + +   + G GR+ A      GA+V I   + +R +     ++ A  P E I   
Sbjct: 2   FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAV 61

Query: 360 Q 360
            
Sbjct: 62  V 62

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} Length = 254

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE 354
           L+G+ + +  GA G G   A  A + GARVV+ D+  E   + A ++  AAR   
Sbjct: 3   LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQH 57

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 235

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 13/55 (23%), Positives = 19/55 (34%)

Query: 302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDI 356
           +G++ V  G G  G A+    K  G  V+  D+           V G     E  
Sbjct: 2   SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQADSNILVDGNKNWTEQE 56

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 253

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 39.2 bits (91), Expect = 5e-04
 Identities = 26/160 (16%), Positives = 49/160 (30%), Gaps = 13/160 (8%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNF 359
           L G+   V  GA G G  +       GA+V   DI+    + LA+++   +      ++ 
Sbjct: 4   LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSS 63

Query: 360 QPEKGAILANATPLGMHPN--------TDRVPVSEETLRDYQLVFD----AVYTPRKTRL 407
           + +   ++A         N             +    L D+  +      +V+   +  +
Sbjct: 64  EADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGI 123

Query: 408 LKDAEAAGAIIVSGVEMFLRQAIGQFNLFTGKEAPKEFMR 447
               E  G+II                    K A     R
Sbjct: 124 AAMKETGGSIINMASVSSWLPIEQYAGYSASKAAVSALTR 163

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} Length = 276

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

 Score = 38.9 bits (90), Expect = 8e-04
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
           L G  + +  GA G GRAL     + GA+V + D   ER   L +D        
Sbjct: 3   LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGI 56

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (89), Expect = 8e-04
 Identities = 16/50 (32%), Positives = 19/50 (38%), Gaps = 1/50 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
           LAGR + V     G GR       + GARVV          SL  +  G 
Sbjct: 5   LAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGI 54

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} Length = 259

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

 Score = 38.4 bits (89), Expect = 0.001
 Identities = 18/110 (16%), Positives = 30/110 (27%), Gaps = 13/110 (11%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE----D 355
           L G    V  G+ G G  +     S GA V     + +      +         E    D
Sbjct: 6   LEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKGFKVEASVCD 65

Query: 356 ILNFQPEKGAILANATPLGMHPN--------TDRVPVSEETLRDYQLVFD 397
           + +    +  +   A       N               + T+ DY L+  
Sbjct: 66  LSSRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMS 115

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
           L G+   +     G G+ +A    + GA VV+ DI+ + A  +  ++
Sbjct: 9   LDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEI 55

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} Length = 244

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
           + G + ++ GAG G GR  A+      +++V++DI+    +  A+   G 
Sbjct: 5   VTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGL 54

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (88), Expect = 0.001
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNF 359
            A +   +   + G GRA A      GA+V I     ER +     ++ A    +++ + 
Sbjct: 3   FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSV 62

Query: 360 Q 360
            
Sbjct: 63  V 63

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} Length = 257

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 13/64 (20%), Positives = 22/64 (34%)

Query: 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGA 365
            +   A G G A     ++ G ++V  DI      +  S   G  +   D+L    +   
Sbjct: 5   VISGCATGIGAATRKVLEAAGHQIVGIDIRDAEVIADLSTAEGRKQAIADVLAKCSKGMD 64

Query: 366 ILAN 369
            L  
Sbjct: 65  GLVL 68

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} Length = 255

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 306 FVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
            V     G G+A+A      G  V I D +   AK++AS++
Sbjct: 5   LVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEI 45

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

 Score = 37.4 bits (86), Expect = 0.002
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
           L+G+ + V   A G GRA        GA +V  D +        + +   A   
Sbjct: 3   LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAV 56

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 17/63 (26%), Positives = 21/63 (33%)

Query: 303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPE 362
               V+ G G  G   A  A   GA+V IFDI+ ER   L +                  
Sbjct: 32  PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIET 91

Query: 363 KGA 365
             A
Sbjct: 92  AVA 94

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} Length = 260

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

 Score = 37.5 bits (86), Expect = 0.002
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
             G+   V    G  G A A      G  + + D++ E  +   + V
Sbjct: 3   FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASV 49

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 13/50 (26%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA 349
            +G    V     G GR       + GA+VV          SLA +  G 
Sbjct: 3   FSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGI 52

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} Length = 245

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 0.002
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA 343
           L G+ + + A A G G+A A      GA+V+  DI+  + + L 
Sbjct: 4   LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELE 47

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
           L G+   V  GA G G+A+       G+ VVI     ER KS A ++
Sbjct: 10  LQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADEL 56

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} Length = 242

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
           L  + + +   A G GRA        GAR+V  DI+    +  A  V
Sbjct: 3   LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAV 49

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
           L  +   +  GAGG G   A      GA+VVI DI  +  + + +++
Sbjct: 4   LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNI 50

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} Length = 258

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
              R + +  G  G GRA A    + GA++ + D+  E  ++  + V+  A
Sbjct: 2   FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETA 52

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} Length = 243

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

 Score = 37.0 bits (85), Expect = 0.003
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF 353
             G+   V   + G GRA+A    +RGA+V+        A++++  +    +  
Sbjct: 2   FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGL 55

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.9 bits (85), Expect = 0.003
 Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNF 359
            + + + +   + G GR  A      GA V I     ER +     ++ +    + + + 
Sbjct: 3   FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSV 62

Query: 360 Q 360
            
Sbjct: 63  V 63

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} Length = 294

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV 346
             G+  F+  G  G G+ +     S GA+ VI     +  K+ A  +
Sbjct: 23  FQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQI 69

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} Length = 251

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

 Score = 36.6 bits (84), Expect = 0.004
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 301 LAGR-MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA 350
           L GR   V  G+ G G  +A G    G  VV+   + E A   A  +    
Sbjct: 3   LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKY 53

>d1uwka_ e.51.1.1 (A:) Urocanate hydratase HutU {Pseudomonas putida [TaxId: 303]} Length = 554

class: Multi-domain proteins (alpha and beta)
fold: Urocanase
superfamily: Urocanase
family: Urocanase
domain: Urocanate hydratase HutU
species: Pseudomonas putida [TaxId: 303]

 Score = 37.1 bits (86), Expect = 0.004
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 297 FGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK 340
           +G  L G+  + AG GG G A    A   GA  +  +    R  
Sbjct: 158 YGGSLKGKWVLTAGLGGMGGAQPLAATLAGACSLNIESQQSRID 201

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	454
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	100.0
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	100.0
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	100.0
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	100.0
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	100.0
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	100.0
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	100.0
d1vi2a2	102	Putative shikimate dehydrogenase YdiB {Escherichia	100.0
d1p77a2	101	Shikimate 5-dehydrogenase AroE {Haemophilus influe	100.0
d1nyta2	101	Shikimate 5-dehydrogenase AroE {Escherichia coli [	100.0
d1nvta2	110	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	99.98
d1npya2	102	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	99.97
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	99.49
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	99.18
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.72
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.22
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.02
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	97.98
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	97.95
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.94
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	97.94
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.94
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.93
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	97.91
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.9
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.89
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.86
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	97.86
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.86
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	97.85
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	97.82
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	97.82
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.81
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	97.8
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	97.8
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	97.79
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	97.78
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.77
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.77
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	97.75
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.74
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	97.71
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	97.71
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	97.71
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	97.7
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	97.69
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.66
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	97.66
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	97.65
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.64
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.63
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.62
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	97.6
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.59
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	97.57
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	97.56
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	97.55
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.55
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.54
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	97.52
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	97.52
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.52
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	97.5
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	97.5
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.49
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.49
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	97.49
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.47
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.47
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	97.46
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.45
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	97.45
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	97.44
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.44
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.4
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	97.39
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	97.39
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	97.39
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	97.38
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	97.36
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	97.35
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	97.34
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.34
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.33
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	97.32
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	97.32
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	97.31
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.29
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	97.29
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	97.29
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.26
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.23
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.22
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.22
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.22
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	97.21
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.21
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.21
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	97.2
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.19
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.16
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	97.14
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	97.14
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.13
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.13
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.12
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	97.11
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.1
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.06
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.05
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.04
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.04
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.03
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.02
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.02
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.0
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.0
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.98
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.98
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	96.96
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.95
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	96.93
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	96.92
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	96.9
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.9
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.88
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.87
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	96.86
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.86
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	96.86
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.82
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	96.81
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	96.77
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.69
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	96.64
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	96.62
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.61
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	96.61
d1yo6a1	250	Putative carbonyl reductase sniffer {Caenorhabditi	96.59
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	96.54
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.47
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.45
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.43
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.42
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	96.39
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	96.38
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	96.38
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.35
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	96.35
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.31
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.26
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	96.25
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	96.24
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	96.22
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.17
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.07
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.06
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.03
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	96.01
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.0
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.88
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	95.86
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	95.85
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	95.74
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	95.67
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	95.67
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	95.63
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	95.55
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	95.51
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	95.51
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	95.5
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	95.5
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.47
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	95.44
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.35
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	95.27
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	95.2
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	95.18
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	95.12
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.11
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	95.09
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	95.06
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.04
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	95.0
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.91
d1snya_	248	Carbonyl reductase sniffer {Fruit fly (Drosophila	94.88
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	94.77
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.74
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	94.71
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.68
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.66
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	94.63
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.63
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	94.62
d1zmta1	252	Halohydrin dehalogenase HheC {Agrobacterium tumefa	94.59
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.58
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	94.52
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	94.46
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	94.44
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.41
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	94.4
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.38
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.37
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.36
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	94.34
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	94.33
d2fr1a1	259	Erythromycin synthase, eryAI, 1st ketoreductase mo	94.32
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	94.24
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	94.23
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	94.18
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.03
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.02
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	94.01
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.94
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	93.82
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	93.82
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.74
d1uh5a_	329	Enoyl-ACP reductase {Malaria parasite (Plasmodium	93.73
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	93.66
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.58
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.57
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	93.52
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	93.52
d1jtva_	285	Human estrogenic 17beta-hydroxysteroid dehydrogena	93.52
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	93.41
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.34
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	93.28
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.27
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	93.24
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	93.22
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	93.21
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	93.12
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	93.05
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	92.99
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	92.97
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	92.91
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.88
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	92.85
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	92.82
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	92.58
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	92.48
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	92.4
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	92.37
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	92.31
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	92.29
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	92.26
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.2
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.12
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	92.09
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.0
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	91.95
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.88
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.79
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	91.73
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	91.54
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	91.22
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.21
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	90.97
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.97
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	90.94
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.76
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	90.53
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	90.44
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.34
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	90.14
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	90.12
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	89.95
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	89.86
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	89.85
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	89.68
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	89.56
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	89.43
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	89.33
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	89.33
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	89.09
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	89.07
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	88.7
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	88.66
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	88.59
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	88.57
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	88.39
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	88.37
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	88.35
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	88.25
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.22
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	88.17
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	88.1
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	87.79
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.79
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	87.48
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	87.0
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	86.76
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	86.47
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	86.44
d1vkza2	90	Glycinamide ribonucleotide synthetase (GAR-syn), N	86.37
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	86.29
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.86
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	85.82
d2ax3a2	211	Hypothetical protein TM0922, N-terminal domain {Th	85.8
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	85.42
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	85.4
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.31
d1yova1	529	Amyloid beta precursor protein-binding protein 1,	85.28
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.11
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	84.91
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.85
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	84.5
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	84.21
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	84.2
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	83.88
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	83.86
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	83.71
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	83.25
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.1
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	82.5
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.36
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.3
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	81.92
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	81.67
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	81.55
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	81.51
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	81.51
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	81.4
d1gq2a1	298	Mitochondrial NAD(P)-dependent malic enzyme {Domes	80.89
d1o0sa1	308	Mitochondrial NAD(P)-dependent malic enzyme {Pig r	80.72
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	80.38

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=100.00  E-value=6.9e-45  Score=347.38  Aligned_cols=167  Identities=24%  Similarity=0.304  Sum_probs=157.2

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHhC-CcEEEEeccCcchHHHHhhh-cCCCCeEEEEeeccCCCCCCHhHHH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDLG-ADYVDFELKVASNILGKQYS-SHQSGTRFIVSCNLDCETPSEEDLG   78 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~-~~yvDvE~~~~~~~~~~l~~-~~~~~~kiI~S~H~f~~tp~~~~l~   78 (454)
                      |+|||+|+++|||.|++++++|+++|+.++++| ++|||||++..++.++++.. ++..++++|+|||||++||+.++|.
T Consensus        76 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~  155 (252)
T d1gqna_          76 PLLFTFRSAKEGGEQTITTQHYLTLNRAAIDSGLVDMIDLELFTGDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMV  155 (252)
T ss_dssp             CEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHSCCSEEEEEGGGCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHH
T ss_pred             CEEEEEechhhCCCCCCCHHHHHHHHHHHHHcCCCceEeccccccHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHH
Confidence            899999999999999999999999999999998 89999999999887777764 5678999999999999999999999


Q ss_pred             HHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc-----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCCC
Q 012866           79 YLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH-----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVLG  153 (454)
Q Consensus        79 ~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~-----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~ApG  153 (454)
                      +++++|.+.||||+|||+||++.+|++++++++.+     .++|+|+||||+.|++||+++++|||++||+++++++|||
T Consensus       156 ~~~~~m~~~gaDivKia~~a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~G~~SRi~~~~~GS~~tya~~~~~sAPG  235 (252)
T d1gqna_         156 SRLRKMQALGADIPKIAVMPQSKHDVLTLLTATLEMQQHYADRPVITMSMAKEGVISRLAGEVFGSAATFGAVKQASAPG  235 (252)
T ss_dssp             HHHHHHHHTTCSEEEEEECCSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTTTHHHHHCHHHHTCCEEECBSSSCCSTT
T ss_pred             HHHHHHHHhCCCeEEEEecCCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCcchhHHHHHHHhCCceEeccCCCCCCCC
Confidence            99999999999999999999999999999998643     3789999999999999999999999999999999999999


Q ss_pred             CCChHhhhhhcccc
Q 012866          154 LPTVESLRQTYKVE  167 (454)
Q Consensus       154 Q~~~~~l~~~~~~~  167 (454)
                      |+++++|+++++..
T Consensus       236 Q~~~~~l~~~l~~l  249 (252)
T d1gqna_         236 QIAVNDLRSVLMIL  249 (252)
T ss_dssp             CCBHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999999988753

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2.7e-43  Score=333.39  Aligned_cols=165  Identities=22%  Similarity=0.326  Sum_probs=151.2

Q ss_pred             CEEEEeccCCCCCCCCCCHHHHHHHHHHHHHh-CCcEEEEeccCcchHH--HHhh-hcCCCCeEEEEeeccCCCCCCHhH
Q 012866            1 MLCNVSRPKWAGGLYEGDEHKRLEALHLAEDL-GADYVDFELKVASNIL--GKQY-SSHQSGTRFIVSCNLDCETPSEED   76 (454)
Q Consensus         1 p~l~T~R~~~eGG~~~~~~~~~~~ll~~~~~~-~~~yvDvE~~~~~~~~--~~l~-~~~~~~~kiI~S~H~f~~tp~~~~   76 (454)
                      |+|||+|+++|||.|++++++|.+++..+++. +++|||||++.+.+..  .++. ..++.++++|+|||||++||+.++
T Consensus        62 PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDiE~~~~~~~~~~~~~~~~~~~~~~~vI~S~H~f~~TP~~~e  141 (236)
T d1sfla_          62 KLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTPPLDE  141 (236)
T ss_dssp             EEEEECCBGGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHH
T ss_pred             cEEEEEeCHHHCCCCCCCHHHHHHHHHHHHHhcCCchhhhhhcchhhHHHHHHHHHHhhcCCCEEEEEEcCCCCCCCHHH
Confidence            89999999999999999999999999998886 5999999999876432  2333 356689999999999999999999


Q ss_pred             HHHHHHHHHhcCCCEEEEecccCCHhHHHHHHHHhcc----CCCCEEEEEcCCCcchhhcccCCCCCcccccccCCCCCC
Q 012866           77 LGYLVSRMQATGADIIKLVFSVNDITEIARIFQLLSH----CQVPIIAYSVGERGLVSQLLSPKFNGALVYGSLKGTPVL  152 (454)
Q Consensus        77 l~~~~~~~~~~gadivKia~~~~~~~D~~~l~~~~~~----~~~p~i~~~MG~~G~~sRil~~~~gs~~ty~~l~~~~Ap  152 (454)
                      +.+++++|.+.||||+|||+||++.+|++++++++.+    .++|+|+||||+.|++||+++++|||++||+++++++||
T Consensus       142 l~~~~~~~~~~gaDivKia~~~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG~~G~~sRi~~~~~GS~~tya~~~~~sAP  221 (236)
T d1sfla_         142 LQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGEPQAP  221 (236)
T ss_dssp             HHHHHHHHHTTCCSEEEEEECCSSHHHHHHHHHHHHHHHHHCSSEEEEEECTGGGHHHHHTGGGGTBCEEEEBSSCCSST
T ss_pred             HHHHHHHHHHhCCCeEEEEEecCCHHHHHHHHHHHHHHhhccCCCEEEEecCCcchHHHHHHHHhCCceEEccCCCCCCC
Confidence            9999999999999999999999999999999998643    478999999999999999999999999999999999999


Q ss_pred             CCCChHhhhhhcc
Q 012866          153 GLPTVESLRQTYK  165 (454)
Q Consensus       153 GQ~~~~~l~~~~~  165 (454)
                      ||+++++|++++.
T Consensus       222 GQ~~~~~lr~~l~  234 (236)
T d1sfla_         222 GQIDVTDLKAQVT  234 (236)
T ss_dssp             TCCBHHHHHHHHT
T ss_pred             CCcCHHHHHHHHh
Confidence            9999999999875

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-38  Score=287.04  Aligned_cols=163  Identities=23%  Similarity=0.276  Sum_probs=143.2

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC---
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA---  349 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~---  349 (454)
                      ||.||+.+|++.             +..++||+|+|+|+||+|||++++|.++|++|+|+|||.++++++++.+...   
T Consensus         1 Dg~Gf~~~l~~~-------------~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~   67 (170)
T d1nyta1           1 DGVGLLSDLERL-------------SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSI   67 (170)
T ss_dssp             HHHHHHHHHHHH-------------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSE
T ss_pred             CHhHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccc
Confidence            899999998763             3567899999999999999999999999999999999999999999988642   


Q ss_pred             -ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCc-eeccHHHHHH
Q 012866          350 -ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-IVSGVEMFLR  427 (454)
Q Consensus       350 -~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~~~Gl~mlv~  427 (454)
                       ..++++.   ...++|+||||||+||.++.  .+++.+.+++..+|+|++|+|.+|+|+++|+++||. +++|++||++
T Consensus        68 ~~~~~~~~---~~~~~dliIN~Tp~G~~~~~--~~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~~i~Gl~MLi~  142 (170)
T d1nyta1          68 QALSMDEL---EGHEFDLIINATSSGISGDI--PAIPSSLIHPGIYCYDMFYQKGKTPFLAWCEQRGSKRNADGLGMLVA  142 (170)
T ss_dssp             EECCSGGG---TTCCCSEEEECCSCGGGTCC--CCCCGGGCCTTCEEEESCCCSSCCHHHHHHHHTTCCEEECTHHHHHH
T ss_pred             cccccccc---cccccceeecccccCcccCC--CCCcHHHhccCcEEEEeecCCCCCHHHHHHHHcCCCcccCCHHHHHH
Confidence             2233333   23568999999999998753  356677899999999999999999999999999996 7899999999


Q ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866          428 QAIGQFNLFTGKEAPKEFMREIVLAK  453 (454)
Q Consensus       428 Qa~~~f~lw~g~~~p~~~~~~~~~~~  453 (454)
                      ||+.||++|||+++|.+.|++++.++
T Consensus       143 Qa~~~f~lwtG~~~~~~~~~~~l~~~  168 (170)
T d1nyta1         143 QAAHAFLLWHGVLPDVEPVIKQLQEE  168 (170)
T ss_dssp             HHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence            99999999999999999999998764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=8.8e-39  Score=287.29  Aligned_cols=160  Identities=24%  Similarity=0.373  Sum_probs=140.2

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCcc
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAAR  351 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~  351 (454)
                      ||.||.++|++.             +.+ ++++|+|+|+||+|||++++|.+.|+ +|+|+||+.+++++|++.++....
T Consensus         1 D~~G~~~~l~~~-------------~~~-~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~   66 (167)
T d1npya1           1 DYIAIVKLIEKY-------------HLN-KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYI   66 (167)
T ss_dssp             HHHHHHHHHHHT-------------TCC-TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEE
T ss_pred             ChHHHHHHHHHc-------------CCC-CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhh
Confidence            899999998752             123 67899999999999999999999999 999999999999999998865432


Q ss_pred             ccccccccCCCCccEEEECCCCCCCCCCCCC--CCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHH
Q 012866          352 PFEDILNFQPEKGAILANATPLGMHPNTDRV--PVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQA  429 (454)
Q Consensus       352 ~~~~l~~~~~~~~divInat~~g~~p~~~~~--~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa  429 (454)
                      .  .+   ...++|+||||||+||.|..+..  +++...+++..+|+|++|+|.+|+|+++|+++||++++|++||++||
T Consensus        67 ~--~~---~~~~~DliINaTpiGm~~~~~~~~l~~~~~~~~~~~~v~D~vY~P~~T~ll~~A~~~G~~~i~Gl~Mli~Qa  141 (167)
T d1npya1          67 N--SL---ENQQADILVNVTSIGMKGGKEEMDLAFPKAFIDNASVAFDVVAMPVETPFIRYAQARGKQTISGAAVIVLQA  141 (167)
T ss_dssp             S--CC---TTCCCSEEEECSSTTCTTSTTTTSCSSCHHHHHHCSEEEECCCSSSSCHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred             h--cc---cccchhhheeccccCCccccccccccccHhhcCCcceEEEEeeccCCCHHHHHHHHCCCeEEECHHHHHHHH
Confidence            2  22   23568999999999998875544  45567788899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCHHHHHHHHH
Q 012866          430 IGQFNLFTGKEAPKEFMREIVL  451 (454)
Q Consensus       430 ~~~f~lw~g~~~p~~~~~~~~~  451 (454)
                      +.||++|||+++|.++|+++..
T Consensus       142 ~~~f~lwtg~~~~~~~~~~aa~  163 (167)
T d1npya1         142 VEQFELYTHQRPSDELIAEAAA  163 (167)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCHHHHHHHHH
Confidence            9999999999999999999864

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=4.5e-37  Score=278.66  Aligned_cols=166  Identities=33%  Similarity=0.508  Sum_probs=144.7

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC---
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA---  349 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~---  349 (454)
                      ||.||+++|++..             ..+++|+|+|+|+||+|||++++|.+.| +|+|+||+.++++++++.+...   
T Consensus         1 D~~G~~~~l~~~~-------------~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~   66 (177)
T d1nvta1           1 DGIGARMALEEEI-------------GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNK   66 (177)
T ss_dssp             HHHHHHHHHHHHH-------------CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhC-------------CCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhch
Confidence            8999999998743             4589999999999999999999997666 9999999999999999887531   


Q ss_pred             ----ccccccccccCCCCccEEEECCCCCCCCCCCCC-CCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHH
Q 012866          350 ----ARPFEDILNFQPEKGAILANATPLGMHPNTDRV-PVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       350 ----~~~~~~l~~~~~~~~divInat~~g~~p~~~~~-~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                          .++++++.. ....+|++|||||+||.|..+.. +++.+.+.+..+++|++|+|.+|+|++.|+++||++++|++|
T Consensus        67 ~~~~~~~~~~~~~-~~~~~dliIn~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~T~l~~~a~~~G~~~i~Gl~M  145 (177)
T d1nvta1          67 KFGEEVKFSGLDV-DLDGVDIIINATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLETVLLKEAKKVNAKTINGLGM  145 (177)
T ss_dssp             CHHHHEEEECTTC-CCTTCCEEEECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSSCHHHHHHHTTTCEEECTHHH
T ss_pred             hhhhhhhhhhhhh-ccchhhhhccCCcccccccccccchhhhhccCcccceeeecCCcHhHHHHHHHHHCCCcccCCHHH
Confidence                234555554 45678999999999998864433 356678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866          425 FLRQAIGQFNLFTGKEAPKEFMREIVLAK  453 (454)
Q Consensus       425 lv~Qa~~~f~lw~g~~~p~~~~~~~~~~~  453 (454)
                      |++||+.||++|||.++|.+.|++++.++
T Consensus       146 Lv~Qa~~qf~lwtg~~~~~~~~r~~l~~~  174 (177)
T d1nvta1         146 LIYQGAVAFKIWTGVEPNIEVMKNAIIDK  174 (177)
T ss_dssp             HHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999998764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.8e-36  Score=272.05  Aligned_cols=164  Identities=32%  Similarity=0.504  Sum_probs=136.6

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHH---HHHHHHHHhcC
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE---RAKSLASDVMG  348 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~---~a~~la~~~~~  348 (454)
                      ||.||+++|++.             +.++++|+|+|+|+||+|||++++|.+.|+ +|+|+||+.+   +++.++++++.
T Consensus         1 D~~Gf~~~l~~~-------------~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~   67 (182)
T d1vi2a1           1 DGTGHIRAIKES-------------GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNE   67 (182)
T ss_dssp             HHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHc-------------CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHh
Confidence            899999998652             357899999999999999999999999999 9999999865   45556666643


Q ss_pred             Cc------ccccc---ccccCCCCccEEEECCCCCCCCCCCCC-CCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCce
Q 012866          349 AA------RPFED---ILNFQPEKGAILANATPLGMHPNTDRV-PVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAII  418 (454)
Q Consensus       349 ~~------~~~~~---l~~~~~~~~divInat~~g~~p~~~~~-~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~  418 (454)
                      ..      .++.+   +.+ .+..+|+||||||+||.|..... +.+.+.+++..+++|++|+|.+|+|++.|+++||++
T Consensus        68 ~~~~~~~~~~~~~~~~~~~-~~~~~diiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~p~~T~ll~~a~~~g~~~  146 (182)
T d1vi2a1          68 NTDCVVTVTDLADQQAFAE-ALASADILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYNPHMTKLLQQAQQAGCKT  146 (182)
T ss_dssp             HSSCEEEEEETTCHHHHHH-HHHTCSEEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCSSSSCHHHHHHHTTTCEE
T ss_pred             hcCcceEeeecccccchhh-hhcccceeccccCCccccccchhhhhHHHhhhcchhhHHhhcCccccHHHHHHHHCcCeE
Confidence            21      12222   222 23568999999999998764433 345567889999999999999999999999999999


Q ss_pred             eccHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 012866          419 VSGVEMFLRQAIGQFNLFTGKEAPKEFMREIV  450 (454)
Q Consensus       419 ~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~~~  450 (454)
                      ++|++||++||+.||++|||+++|.+.||++|
T Consensus       147 i~Gl~Mli~Qa~~~f~iwtg~~~~~~~~~~~l  178 (182)
T d1vi2a1         147 IDGYGMLLWQGAEQFTLWTGKDFPLEYVKQVM  178 (182)
T ss_dssp             ECHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH
T ss_pred             eccHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            99999999999999999999999999999986

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=3.8e-35  Score=264.32  Aligned_cols=163  Identities=20%  Similarity=0.265  Sum_probs=134.3

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--  350 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--  350 (454)
                      ||.||+++|++.             +..+++|+|+|+|+||+||+++++|.+.+.+|+|+||+.++++++++.+....  
T Consensus         1 D~~Gf~~~l~~~-------------~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~   67 (171)
T d1p77a1           1 DGIGLVTDLQRL-------------NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNI   67 (171)
T ss_dssp             HHHHHHHHHHHT-------------TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCE
T ss_pred             CHHHHHHHHHHc-------------CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcccc
Confidence            899999998752             35688999999999999999999999855599999999999999999986421  


Q ss_pred             --cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEec-CCCCCHHHHHHHHCCCc-eeccHHHHH
Q 012866          351 --RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVY-TPRKTRLLKDAEAAGAI-IVSGVEMFL  426 (454)
Q Consensus       351 --~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y-~P~~T~ll~~A~~~G~~-~~~Gl~mlv  426 (454)
                        ..+++.   ...++|+||||||+||.+.  ..+.+.+.+++..+++|++| +|.+|+|+++|+++||. +++|++||+
T Consensus        68 ~~~~~~~~---~~~~~diiIN~tp~g~~~~--~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g~~~v~~Gl~Ml~  142 (171)
T d1p77a1          68 QAVSMDSI---PLQTYDLVINATSAGLSGG--TASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLGLTNVSDGFGMLV  142 (171)
T ss_dssp             EEEEGGGC---CCSCCSEEEECCCC---------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTTCCCEECSHHHHH
T ss_pred             chhhhccc---cccccceeeeccccccccc--ccchhhhhhcccceeeeeeccCcccHHHHHHHHHcCCCcccCcHHHHH
Confidence              122222   3567999999999999764  33456677888899999999 58899999999999995 679999999


Q ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHhh
Q 012866          427 RQAIGQFNLFTGKEAPKEFMREIVLAK  453 (454)
Q Consensus       427 ~Qa~~~f~lw~g~~~p~~~~~~~~~~~  453 (454)
                      +||+.||++|||.++|.+.|++.+.++
T Consensus       143 ~Qa~~~f~iwtg~~~~~~~~~~~l~~~  169 (171)
T d1p77a1         143 AQAAHSFHLWRGVMPDFVSVYEQLKKA  169 (171)
T ss_dssp             HHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCChHHHHHHHHHH
Confidence            999999999999999999999988653

>d1vi2a2 c.58.1.5 (A:5-106) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.3e-35  Score=240.66  Aligned_cols=99  Identities=29%  Similarity=0.517  Sum_probs=95.8

Q ss_pred             CccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhH
Q 012866          172 DTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLA  249 (454)
Q Consensus       172 ~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A  249 (454)
                      ++++|||||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||++++++||++|+.|
T Consensus         2 k~~l~GliG~Pi~hS~SP~ihn~~f~~~gi~~~Y~~~~v~~~~l~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a   81 (102)
T d1vi2a2           2 KYELIGLMAYPIRHSLSPEMQNKALEKAGLPFTYMAFEVDNDSFPGAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAA   81 (102)
T ss_dssp             CCEEEEEEESCCTTCSHHHHHHHHHHHTTCSEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTSTTGGGGGCSEECHHH
T ss_pred             CeEEEEEEcCCcccccCHHHHHHHHHHcCCCcEEeeEeeCchHHHHHHHHhhhhccchhhhhhHHHHHHHHhcccCCHHH
Confidence            578999999999999999999999999999999999998  589999999988899999999999999999999999999


Q ss_pred             hHccceeEEEEeCCCCeEEEeec
Q 012866          250 QAIAAVNTIIRRPSDGKLIGYNT  272 (454)
Q Consensus       250 ~~igavNTi~~~~~~g~l~G~NT  272 (454)
                      +.+||||||+++  +|+|+||||
T Consensus        82 ~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1vi2a2          82 KLVGAINTIVND--DGYLRGYNT  102 (102)
T ss_dssp             HHHTCCSEEEEE--TTEEEEECH
T ss_pred             HhhCcEEEEEEE--CCEEEEeCC
Confidence            999999999988  899999998

>d1p77a2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=7e-35  Score=239.22  Aligned_cols=99  Identities=23%  Similarity=0.392  Sum_probs=94.5

Q ss_pred             ccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHh
Q 012866          173 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  250 (454)
Q Consensus       173 t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  250 (454)
                      +++|||||+||+||+||.|||.+|+++|+|+.|.++++  ++++++++.+++.+|.|+|||||||+++++++|++|+.|+
T Consensus         1 M~~~~viG~PI~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1p77a2           1 MDLYAVWGNPIAQSKSPLIQNKLAAQTHQTMEYIAKLGDLDAFEQQLLAFFEEGAKGCNITSPFKERAYQLADEYSQRAK   80 (101)
T ss_dssp             CEEEEEEESSCTTCCHHHHHHHHHHHTTCCEEEEEEECCTTTHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHHhccccceeeccHHHHHHHHHhccCCHHHH
Confidence            46899999999999999999999999999999999988  5899999999888999999999999999999999999999


Q ss_pred             HccceeEEEEeCCCCeEEEeec
Q 012866          251 AIAAVNTIIRRPSDGKLIGYNT  272 (454)
Q Consensus       251 ~igavNTi~~~~~~g~l~G~NT  272 (454)
                      .+||||||++.+ +|+|+|+||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1p77a2          81 LAEACNTLKKLD-DGKLYADNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HcCeeEEEEECC-CCEEEEecC
Confidence            999999998763 899999998

>d1nyta2 c.58.1.5 (A:1-101) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.5e-35  Score=238.94  Aligned_cols=99  Identities=29%  Similarity=0.507  Sum_probs=94.5

Q ss_pred             ccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEeccc--CCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcCHhHh
Q 012866          173 TKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFV--DDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVHPLAQ  250 (454)
Q Consensus       173 t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~--~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~~~A~  250 (454)
                      ++.|||||+||+||+||.|||.+|+++|+|+.|.++++  +++.++++.++..+|.|+|||||||++++++||++|+.|+
T Consensus         1 M~~~~liG~pi~hS~SP~ihn~~~~~~gi~~~y~~~~v~~~~~~~~~~~l~~~~~~G~nVT~P~K~~~~~~~d~~~~~a~   80 (101)
T d1nyta2           1 METYAVFGNPIAHSKSPFIHQQFAQQLNIEHPYGRVLAPINDFINTLNAFFSAGGKGANVTVPFKEEAFARADELTERAA   80 (101)
T ss_dssp             CCSEEEEESSCTTCSHHHHHHHHHHHHTCCCCEEEEECCTTCHHHHHHHHHHTTCCEEEECTTCHHHHHHHCSEECHHHH
T ss_pred             CCEEEEeCCCcccccCHHHHHHHHHHcCCcchhhhhcCChHhHHHHHHHhhhccchhheeehHHHHHHHHHhccCChHHH
Confidence            46799999999999999999999999999999999998  5899999999889999999999999999999999999999


Q ss_pred             HccceeEEEEeCCCCeEEEeec
Q 012866          251 AIAAVNTIIRRPSDGKLIGYNT  272 (454)
Q Consensus       251 ~igavNTi~~~~~~g~l~G~NT  272 (454)
                      .+||||||++.+ +|+|+||||
T Consensus        81 ~igAvNti~~~~-~g~l~G~NT  101 (101)
T d1nyta2          81 LAGAVNTLMRLE-DGRLLGDNT  101 (101)
T ss_dssp             HHTCCSEEEECT-TSCEEEECC
T ss_pred             HhCcEEEEEECC-CCeEEEeCC
Confidence            999999999864 899999998

>d1nvta2 c.58.1.5 (A:1-110) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.98  E-value=1.7e-33  Score=234.33  Aligned_cols=104  Identities=47%  Similarity=0.657  Sum_probs=99.6

Q ss_pred             cccCCCccEEEEecCCCCcccCHHHHHHHHHhcCCCceEEecccC--CHHHHHHhcCCCCCCEEEeccCchHHHHhhhhh
Q 012866          167 EHINADTKVFGLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVD--DLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDE  244 (454)
Q Consensus       167 ~~~~~~t~~~~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~--~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~  244 (454)
                      .+++++|++|||||+||+||+||.|||++|+++|+|+.|.+++++  +++++++.++..+|.|+|||||||++++++||+
T Consensus         5 ~mi~~~tk~~gliG~pi~~S~SP~ihn~~~~~~gi~~~y~~~~v~~~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~   84 (110)
T d1nvta2           5 SMINAKTKVIGLIGHPVEHSFSPIMHNAAFKDKGLNYVYVAFDVLPENLKYVIDGAKALGIVGFNVTIPHKIEIMKYLDE   84 (110)
T ss_dssp             BCCCTTCEEEEEEESSCTTCSHHHHHHHHHHHTTCCEEEEEEECCGGGGGGHHHHHHHHTCCEEEECTTSTTGGGGGCSE
T ss_pred             cccCCCccEEEEEcCCcccccCHHHHHHHHHHcCCcEEEeecccCHHHHHHHHHhhcccCcchhheehHHHHHHHHHhcc
Confidence            368899999999999999999999999999999999999999984  899999999888999999999999999999999


Q ss_pred             cCHhHhHccceeEEEEeCCCCeEEEeec
Q 012866          245 VHPLAQAIAAVNTIIRRPSDGKLIGYNT  272 (454)
Q Consensus       245 ~~~~A~~igavNTi~~~~~~g~l~G~NT  272 (454)
                      +|+.|+.+||||||++.  +|+|+||||
T Consensus        85 ~s~~a~~igavNti~~~--~~~l~G~NT  110 (110)
T d1nvta2          85 IDKDAQLIGAVNTIKIE--DGKAIGYNT  110 (110)
T ss_dssp             ECHHHHHHTCCCEEEEE--TTEEEEECC
T ss_pred             CCHHHHHhCcEEEEEEE--CCEEEEeCC
Confidence            99999999999999997  899999998

>d1npya2 c.58.1.5 (A:1-102) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Aminoacid dehydrogenase-like, N-terminal domain
superfamily: Aminoacid dehydrogenase-like, N-terminal domain
family: Shikimate dehydrogenase-like
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=99.97  E-value=4.2e-32  Score=222.73  Aligned_cols=101  Identities=37%  Similarity=0.586  Sum_probs=96.8

Q ss_pred             ccCCCccEE-EEecCCCCcccCHHHHHHHHHhcCCCceEEecccCCHHHHHHhcCCCCCCEEEeccCchHHHHhhhhhcC
Q 012866          168 HINADTKVF-GLISKPVGHSKGPILHNPTFRHVNYNGIYVPMFVDDLKKFFSTYSSPDFAGFSVGFPYKEAVMKFCDEVH  246 (454)
Q Consensus       168 ~~~~~t~~~-~liG~pv~hS~SP~~hn~~f~~~gl~~~y~~~~~~~~~~~~~~l~~~~~~G~~VT~P~K~~v~~~~d~~~  246 (454)
                      +++++|+++ +++|+|  ||+||.|||++|+++|+|++|.++++++++++++.++..+|.|+|||||||+++++++|++|
T Consensus         1 mi~~~t~~~~~i~g~P--~s~SP~ihn~~~~~~gi~~~Y~~~~v~~l~~~~~~~~~~~~~G~nVT~P~K~~~~~~~d~~s   78 (102)
T d1npya2           1 MINKDTQLCMSLSGRP--SNFGTTFHNYLYDKLGLNFIYKAFTTQDIEHAIKGVRALGIRGCAVSMPFKETCMPFLDEIH   78 (102)
T ss_dssp             CCCTTCEEEEEECSSC--CSHHHHHHHHHHHHHTCCEEEEEECCSCHHHHHHHHHHHTCCEEEECTTCTTTTGGGCSEEC
T ss_pred             CcCCCCEEEEEEcCCc--ccCCHHHHHHHHHHcCCCeEEeeEecccHHHHHHHHhccccceeEEehhHHHHHHHHhhhCC
Confidence            477889995 899999  89999999999999999999999999999999999988999999999999999999999999


Q ss_pred             HhHhHccceeEEEEeCCCCeEEEeec
Q 012866          247 PLAQAIAAVNTIIRRPSDGKLIGYNT  272 (454)
Q Consensus       247 ~~A~~igavNTi~~~~~~g~l~G~NT  272 (454)
                      +.|+.+||||||+++  +|+|+||||
T Consensus        79 ~~a~~igAvNti~~~--~g~l~G~NT  102 (102)
T d1npya2          79 PSAQAIESVNTIVND--NGFLRAYNT  102 (102)
T ss_dssp             HHHHTTTCCCEEEEE--TTEEEEECH
T ss_pred             hhhhhcCcEEEEEEE--CCEEEEeCC
Confidence            999999999999998  899999998

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.49  E-value=1.6e-14  Score=126.81  Aligned_cols=125  Identities=22%  Similarity=0.418  Sum_probs=96.1

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ++++++++|||+|++|+.++.+|...|+ +|+|+|||.++|++++++++..+.+++++.+ .+.++|+||+||+.+. | 
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~-~l~~~Divi~atss~~-~-   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVD-HLARSDVVVSATAAPH-P-   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHH-HHHTCSEEEECCSSSS-C-
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHH-HhccCCEEEEecCCCC-c-
Confidence            5789999999999999999999999999 8999999999999999999988888888876 5678999999998643 1 


Q ss_pred             CCCCCCChhccc---------CCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHHHHHHHHH
Q 012866          379 TDRVPVSEETLR---------DYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMFLRQAIGQ  432 (454)
Q Consensus       379 ~~~~~i~~~~l~---------~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~  432 (454)
                          .+..+.++         +..+++|+.+ |+ -.|-+.......+.-++.+++++.+-.+.
T Consensus        98 ----ii~~~~i~~~~~~r~~~~~~~iiDlav-Pr~vd~~v~~~~~v~l~~ld~l~~~~~~n~~~  156 (159)
T d1gpja2          98 ----VIHVDDVREALRKRDRRSPILIIDIAN-PRDVEEGVENIEDVEVRTIDDLRVIARENLER  156 (159)
T ss_dssp             ----CBCHHHHHHHHHHCSSCCCEEEEECCS-SCSBCTTGGGSTTEEEEEHHHHHHHHHHHHHH
T ss_pred             ----cccHhhhHHHHHhcccCCCeEEEeecC-CCCcChhhhccCCeEEEeHHHHHHHHHHHHHH
Confidence                25554432         2358999985 55 34433332222334567888888776654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.18  E-value=2e-11  Score=109.73  Aligned_cols=116  Identities=20%  Similarity=0.270  Sum_probs=86.5

Q ss_pred             EeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          269 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       269 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      |+|||+.|.+..+.+..            +.+++||+++|+|+ ||+|++++..|++.|++|++++|+.++++++++.+.
T Consensus         1 g~~~~~~~~v~~~~~~~------------~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~   68 (191)
T d1luaa1           1 GSNTTAAAGVALVVKAA------------GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVN   68 (191)
T ss_dssp             GHHHHHHHHHHHHHHHT------------TSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             CCCccHHHHHHHHHHHc------------CCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHH
Confidence            78999999988875532            36899999999995 799999999999999999999999999999988774


Q ss_pred             C----Cc--ccc---ccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc---CCcEEEEEecCCC
Q 012866          348 G----AA--RPF---EDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR---DYQLVFDAVYTPR  403 (454)
Q Consensus       348 ~----~~--~~~---~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~---~~~~v~D~~y~P~  403 (454)
                      .    ..  .+.   +++.+ ...+.|+|||+++.|+.      .++.+.++   ...++.|+.+.|.
T Consensus        69 ~~~~~~~~~~d~~~~~~~~~-~~~~iDilin~Ag~g~~------~~~~e~~~~~~~~nv~~~~~~~~~  129 (191)
T d1luaa1          69 KRFKVNVTAAETADDASRAE-AVKGAHFVFTAGAIGLE------LLPQAAWQNESSIEIVADYNAQPP  129 (191)
T ss_dssp             HHHTCCCEEEECCSHHHHHH-HTTTCSEEEECCCTTCC------CBCHHHHHTCTTCCEEEECCCSSS
T ss_pred             hccchhhhhhhcccHHHHHH-HhcCcCeeeecCccccc------cCCHHHHHhhhcceeehhHhhHHH
Confidence            3    11  112   22333 35778999999987653      23444332   3346777777654

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.72  E-value=1.7e-09  Score=94.52  Aligned_cols=111  Identities=19%  Similarity=0.232  Sum_probs=79.0

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccc------cccccCCCCccEEEECCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE------DILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~------~l~~~~~~~~divInat~~g~~  376 (454)
                      +|+|+|+|||.+|+.+|..|.+.|.+|+|+|||.++++++++.++.......      ...+ .+...|++|.++|....
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDA-EVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHH-HHTTSSEEEECSCGGGH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHh-hhhccceeEeeccchhh
Confidence            5899999999999999999999999999999999999999998865332111      1111 24567899988874211


Q ss_pred             CCCCCCCCChhcccCCcEEEEEecCCCC-CHHHHHHHHCCCcee
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAVYTPRK-TRLLKDAEAAGAIIV  419 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~y~P~~-T~ll~~A~~~G~~~~  419 (454)
                           ..+...+...+..++|+.|.+.. ..+..+++..+....
T Consensus        81 -----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  119 (182)
T d1e5qa1          81 -----ATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGITVM  119 (182)
T ss_dssp             -----HHHHHHHHHHTCEEECSSCCCHHHHHTHHHHHHTTCEEE
T ss_pred             -----hHHHHHHHhhccceeecccCcHHHHHHHHHhccccceee
Confidence                 11222345566788999887653 455667777766443

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.22  E-value=1.3e-06  Score=75.33  Aligned_cols=98  Identities=22%  Similarity=0.232  Sum_probs=73.5

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccc----cccccccCCCCccEEEECCCCCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP----FEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~----~~~l~~~~~~~~divInat~~g~~  376 (454)
                      .+..+|+|||+|-+|+.++...+.+|++|++++++.++.+++.+.++.....    -+.+.+ .+.++|+||+|.-+-- 
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~-~~~~aDivI~aalipG-  107 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIET-AVAEADLLIGAVLVPG-  107 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHH-HHHTCSEEEECCCCTT-
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHH-hhccCcEEEEeeecCC-
Confidence            3567999999999999999999999999999999999999998887653211    112333 4567999999874311 


Q ss_pred             CCCCCCCCChhc---ccCCcEEEEEecC
Q 012866          377 PNTDRVPVSEET---LRDYQLVFDAVYT  401 (454)
Q Consensus       377 p~~~~~~i~~~~---l~~~~~v~D~~y~  401 (454)
                       ...+..+..+.   ++++.+++|+.-.
T Consensus       108 -~~aP~lIt~~mv~~Mk~GSVIVDvaid  134 (168)
T d1pjca1         108 -RRAPILVPASLVEQMRTGSVIVDVAVD  134 (168)
T ss_dssp             -SSCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             -cccCeeecHHHHhhcCCCcEEEEeecC
Confidence             11223467665   5789999999764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=1.3e-05  Score=62.27  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=34.3

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +++||+++|+|.|.+|++++..|.+.|++|++++.+.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            4789999999999999999999999999999999864

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=1.1e-05  Score=74.15  Aligned_cols=74  Identities=24%  Similarity=0.259  Sum_probs=57.4

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC-c--ccccc---cccc--CCCCccEEEEC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA-A--RPFED---ILNF--QPEKGAILANA  370 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~-~--~~~~~---l~~~--~~~~~divIna  370 (454)
                      +++||++||.|+ +|+|++++..|++.|++|.+++|+.+++++++++++.. .  +++.+   +++.  .....|++||+
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~g~iDilVnn   81 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDLVSLAKECPGIEPVCVDLGDWDATEKALGGIGPVDLLVNN   81 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHcCCCeEEEEC
Confidence            478999999997 59999999999999999999999999999999887542 1  22221   1110  34678999998


Q ss_pred             CCC
Q 012866          371 TPL  373 (454)
Q Consensus       371 t~~  373 (454)
                      ...
T Consensus        82 Ag~   84 (242)
T d1cyda_          82 AAL   84 (242)
T ss_dssp             CCC
T ss_pred             Ccc
Confidence            754

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.4e-05  Score=73.45  Aligned_cols=75  Identities=27%  Similarity=0.315  Sum_probs=58.1

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC-c--ccccc---cccc--CCCCccEEEEC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA-A--RPFED---ILNF--QPEKGAILANA  370 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~-~--~~~~~---l~~~--~~~~~divIna  370 (454)
                      .++||++||.|+ +|+|++++..|++.|++|.+++|+.+++++++++++.. .  +++.+   ++..  .....|++||+
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~g~iDilVnn   83 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADLDSLVRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNN   83 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHSTTCEEEECCTTCHHHHHHHHTTCCCCCEEEEC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHHhCCceEEEec
Confidence            478999999996 59999999999999999999999999999999887642 1  22221   1110  34678999998


Q ss_pred             CCCC
Q 012866          371 TPLG  374 (454)
Q Consensus       371 t~~g  374 (454)
                      ....
T Consensus        84 Ag~~   87 (244)
T d1pr9a_          84 AAVA   87 (244)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            7543

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.94  E-value=1.5e-06  Score=74.78  Aligned_cols=110  Identities=14%  Similarity=0.149  Sum_probs=73.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      +|-|||.|-||++++..|.+.|++|+++||++++++++.+.......+..+    ...++|+||-|.|-+-  ......+
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e----~~~~~d~ii~~v~~~~--~v~~v~~   75 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKA----IAEQCDVIITMLPNSP--HVKEVAL   75 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHH----HHHHCSEEEECCSSHH--HHHHHHH
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHH----HHhCCCeEEEEcCCHH--HHHHHHh
Confidence            588999999999999999999999999999999999887653222212222    2346899998886421  1011001


Q ss_pred             C----hhcccCCcEEEEEecCCCCC--HHHHHHHHCCCceec
Q 012866          385 S----EETLRDYQLVFDAVYTPRKT--RLLKDAEAAGAIIVS  420 (454)
Q Consensus       385 ~----~~~l~~~~~v~D~~y~P~~T--~ll~~A~~~G~~~~~  420 (454)
                      .    ...+.++.+++|+.-...++  .+.+.++++|..+++
T Consensus        76 ~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vd  117 (161)
T d1vpda2          76 GENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLD  117 (161)
T ss_dssp             STTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceec
Confidence            1    12356789999998764432  344566667776553

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=6.2e-06  Score=75.85  Aligned_cols=74  Identities=24%  Similarity=0.323  Sum_probs=57.2

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      +++||.++|.|+ +|+|++++..|++.|++|.+++|+.+++++++++++...    +++.+   ++++      .....|
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENGAQAISDYLGANGKGLMLNVTDPASIESVLEKIRAEFGEVD   80 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhCCCCcEEEEEecCHHHhhhhhhhhhcccCCcc
Confidence            378999999996 499999999999999999999999999999999987532    22211   1110      235689


Q ss_pred             EEEECCCC
Q 012866          366 ILANATPL  373 (454)
Q Consensus       366 ivInat~~  373 (454)
                      ++||+...
T Consensus        81 ilVnnAg~   88 (243)
T d1q7ba_          81 ILVNNAGI   88 (243)
T ss_dssp             EEEECCCC
T ss_pred             eehhhhhh
Confidence            99998643

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=5.4e-05  Score=64.91  Aligned_cols=117  Identities=15%  Similarity=0.191  Sum_probs=83.8

Q ss_pred             CCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      +.++.||+++|+|-+. .|+.++.-|.+.|+.|++++......++                  ...++|+||.|+..   
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t~~l~~------------------~~~~ADivI~a~G~---   90 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRH------------------HVENADLLIVAVGK---   90 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSCSCHHH------------------HHHHCSEEEECSCC---
T ss_pred             CcccccceEEEEeccccccHHHHHHHHHhhccccccccccchhHH------------------HHhhhhHhhhhccC---
Confidence            4678999999999886 6999999999999999999875432221                  22458999988853   


Q ss_pred             CCCCCCCCChhcccCCcEEEEEecCCC-C------CHHHHHHHHCCCc--eeccH-----HHHHHHHHHHHHHhcCC
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAVYTPR-K------TRLLKDAEAAGAI--IVSGV-----EMFLRQAIGQFNLFTGK  439 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~y~P~-~------T~ll~~A~~~G~~--~~~Gl-----~mlv~Qa~~~f~lw~g~  439 (454)
                      |.    .+..++++++.+|+|+-.+.. +      -.+-...+...+.  +-.|.     -||....+.+++-|...
T Consensus        91 p~----~i~~~~vk~g~vvIDvGi~~~~~~~~~Gdvd~~~v~~~a~~~TPvPGGVGP~Tva~L~~N~v~a~~~~~~~  163 (166)
T d1b0aa1          91 PG----FIPGDWIKEGAIVIDVGINRLENGKVVGDVVFEDAAKRASYITPVPGGVGPMTVATLIENTLQACVEYHDP  163 (166)
T ss_dssp             TT----CBCTTTSCTTCEEEECCCEECTTSCEECSBCHHHHHHHCSEECCSSSSSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cc----cccccccCCCcEEEecCceecCCCCEEeccccHhHHhheeEeCCCCCcccHHHHHHHHHHHHHHHHHHhCc
Confidence            32    477889999999999877642 1      1122333334432  34445     48999999999988754

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.93  E-value=1e-05  Score=68.75  Aligned_cols=64  Identities=19%  Similarity=0.236  Sum_probs=52.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      ++.+||+|-||.+++..|.+.|. +|++++|+++++++++++++....  ++.+  .+.++|+||-|++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~--~~~~--~v~~~Div~lavk   66 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETS--ATLP--ELHSDDVLILAVK   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEE--SSCC--CCCTTSEEEECSC
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccc--cccc--cccccceEEEecC
Confidence            58899999999999999998885 999999999999999998875432  2222  2456899998886

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=97.91  E-value=8.6e-06  Score=75.40  Aligned_cols=75  Identities=25%  Similarity=0.261  Sum_probs=57.9

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      +++||.+||.|++ |+|++++..|++.|++|++++|+.+++++++++++...    +++.+   ++++      .....|
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   81 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEGAATARELGDAARYQHLDVTIEEDWQRVVAYAREEFGSVD   81 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEcccCCHHHHHHHHHHHHHHcCCcc
Confidence            4789999999975 99999999999999999999999999999999887532    22211   1110      124679


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus        82 ilVnnAg~~   90 (254)
T d1hdca_          82 GLVNNAGIS   90 (254)
T ss_dssp             EEEECCCCC
T ss_pred             EEEecCccc
Confidence            999987543

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.90  E-value=6.5e-06  Score=71.76  Aligned_cols=111  Identities=17%  Similarity=0.223  Sum_probs=75.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC-----ccccccccccCCCCccEEEECCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA-----ARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~-----~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      .++|-|||.|-||.+++..|.+.|++|++|||++++++++.++-...     ....+++.+ ....+|++|.+.+.+-. 
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ii~~~~~~~~-   79 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVS-KLKKPRRIILLVKAGQA-   79 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHH-HBCSSCEEEECSCTTHH-
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhh-hhcccceEEEecCchHH-
Confidence            36799999999999999999999999999999999999997753211     112223322 34567888877664310 


Q ss_pred             CCCCCCCCh---hcccCCcEEEEEecC-CCCC-HHHHHHHHCCCce
Q 012866          378 NTDRVPVSE---ETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAII  418 (454)
Q Consensus       378 ~~~~~~i~~---~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~  418 (454)
                       .  ..+..   ..++++.+++|+.-. |..+ .+.++++++|..+
T Consensus        80 -v--~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~  122 (176)
T d2pgda2          80 -V--DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILF  122 (176)
T ss_dssp             -H--HHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             -H--HHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCce
Confidence             0  00111   235678899999765 4443 4456677788754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.89  E-value=0.00011  Score=65.31  Aligned_cols=130  Identities=23%  Similarity=0.291  Sum_probs=91.9

Q ss_pred             cHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccc
Q 012866          273 DCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARP  352 (454)
Q Consensus       273 D~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~  352 (454)
                      -+.|...+++..+...+        ..+++|++|+|-|.|.+|+.++..|.+.|++|++++.+.++.... ..++...++
T Consensus         5 Ta~Gv~~~~~~~~~~~g--------~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~-~~~g~~~~~   75 (201)
T d1c1da1           5 TAVGVFEAMKATVAHRG--------LGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHA-VALGHTAVA   75 (201)
T ss_dssp             HHHHHHHHHHHHHHHTT--------CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH-HHTTCEECC
T ss_pred             hHHHHHHHHHHHHHHhC--------CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHH-HhhcccccC
Confidence            36788888877665321        136899999999999999999999999999999999998876654 344555555


Q ss_pred             cccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc--CCcEEEEEecCCCCCH-HHHHHHHCCCceeccH
Q 012866          353 FEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKTR-LLKDAEAAGAIIVSGV  422 (454)
Q Consensus       353 ~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T~-ll~~A~~~G~~~~~Gl  422 (454)
                      .+++-.   .++||++-|..-+        .++.+..+  +..+++.-.-+|..++ .-+.-+++|+.+++..
T Consensus        76 ~~~~~~---~~~DI~iPcA~~~--------~I~~~~a~~i~ak~i~e~AN~p~~~~~~~~~L~~rgI~~iPD~  137 (201)
T d1c1da1          76 LEDVLS---TPCDVFAPCAMGG--------VITTEVARTLDCSVVAGAANNVIADEAASDILHARGILYAPDF  137 (201)
T ss_dssp             GGGGGG---CCCSEEEECSCSC--------CBCHHHHHHCCCSEECCSCTTCBCSHHHHHHHHHTTCEECCHH
T ss_pred             cccccc---ccceeeecccccc--------cccHHHHhhhhhheeeccCCCCcchhhHHHHhcccceEEEehh
Confidence            555432   4689999765322        24443322  3467778777787666 4456678999877643

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.86  E-value=4.1e-06  Score=72.13  Aligned_cols=110  Identities=15%  Similarity=0.244  Sum_probs=74.5

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      ++|.|||.|-||.+++..|.+.|++|+++||+.++.+.+...-....   .+..+ ....+|+++.+.+.....  ....
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~---~~~~e-~~~~~diii~~v~~~~~~--~~v~   75 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAA---RSARD-AVQGADVVISMLPASQHV--EGLY   75 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC---SSHHH-HHTSCSEEEECCSCHHHH--HHHH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhcccc---chhhh-hccccCeeeecccchhhH--HHHH
Confidence            47999999999999999999999999999999999888765422111   12222 245689999888743111  0000


Q ss_pred             C-C---hhcccCCcEEEEEecC-CCC-CHHHHHHHHCCCcee
Q 012866          384 V-S---EETLRDYQLVFDAVYT-PRK-TRLLKDAEAAGAIIV  419 (454)
Q Consensus       384 i-~---~~~l~~~~~v~D~~y~-P~~-T~ll~~A~~~G~~~~  419 (454)
                      . .   ...+.++.+++|..-. |.. ..+-+.++++|..++
T Consensus        76 ~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~  117 (162)
T d3cuma2          76 LDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAML  117 (162)
T ss_dssp             HSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             hccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEE
Confidence            0 0   1235678899999765 443 356667777887655

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=97.86  E-value=7.9e-06  Score=75.64  Aligned_cols=73  Identities=36%  Similarity=0.441  Sum_probs=57.5

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      ++||+++|.|+ +|+|++++..|++.|++|.+++|+.+++++++++++...    +++.+   +.++      .....|+
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iDi   82 (256)
T d1k2wa_           3 LDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEAARATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDI   82 (256)
T ss_dssp             TTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCTTEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCceEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            67999999997 599999999999999999999999999999999997643    12211   1110      1246799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        83 lVnnAg~   89 (256)
T d1k2wa_          83 LVNNAAL   89 (256)
T ss_dssp             EEECCCC
T ss_pred             EEeeccc
Confidence            9998754

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=2.2e-06  Score=72.90  Aligned_cols=63  Identities=25%  Similarity=0.270  Sum_probs=45.6

Q ss_pred             EEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          307 VLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       307 lViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      -+||+|.||++++.+|.+.+..+.|+||+.+++++++++++....+..+    ...++|+||-|+|.
T Consensus         3 gfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~----~~~~~DiVil~v~d   65 (153)
T d2i76a2           3 NFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEK----HPELNGVVFVIVPD   65 (153)
T ss_dssp             EEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCC----CCC---CEEECSCT
T ss_pred             EEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhh----hhccCcEEEEeccc
Confidence            5899999999999988664334579999999999999998765544333    35678999999874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.4e-05  Score=73.52  Aligned_cols=76  Identities=22%  Similarity=0.375  Sum_probs=58.6

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CCC
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QPE  362 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~  362 (454)
                      ++.||.++|.|++ |+|++++..|++.|++|++++|+.++++++++++..   ..    +++.+   +.++      ...
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            5889999999975 999999999999999999999999999999887742   11    22222   1110      235


Q ss_pred             CccEEEECCCCCC
Q 012866          363 KGAILANATPLGM  375 (454)
Q Consensus       363 ~~divInat~~g~  375 (454)
                      ..|++||+...+.
T Consensus        84 ~idilinnag~~~   96 (244)
T d1yb1a_          84 DVSILVNNAGVVY   96 (244)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             CCceeEeeccccc
Confidence            6899999987664

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=97.82  E-value=2.6e-05  Score=72.46  Aligned_cols=73  Identities=22%  Similarity=0.317  Sum_probs=56.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc------ccccc---cccc------CCCCc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA------RPFED---ILNF------QPEKG  364 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~------~~~~~---l~~~------~~~~~  364 (454)
                      ++||.+||.|+ +|+|++++..|++.|++|++++|+.++++++++++....      +++.+   ++.+      .....
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i   83 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL   83 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence            78999999996 499999999999999999999999999999999886421      12211   1110      12467


Q ss_pred             cEEEECCCC
Q 012866          365 AILANATPL  373 (454)
Q Consensus       365 divInat~~  373 (454)
                      |++||+...
T Consensus        84 D~lVnnAG~   92 (268)
T d2bgka1          84 DIMFGNVGV   92 (268)
T ss_dssp             CEEEECCCC
T ss_pred             ceecccccc
Confidence            999997754

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=97.82  E-value=1.1e-05  Score=74.04  Aligned_cols=73  Identities=22%  Similarity=0.197  Sum_probs=56.9

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc---cccc------CCCCccEEE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~~---l~~~------~~~~~divI  368 (454)
                      ++||+++|.|+ +|+|++++..|++.|++|++++|+.+++++++++++...+  ++.+   ++++      .....|++|
T Consensus         3 L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDilV   82 (242)
T d1ulsa_           3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPLREAAEAVGAHPVVMDVADPASVERGFAEALAHLGRLDGVV   82 (242)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTTCEEEECCTTCHHHHHHHHHHHHHHHSSCCEEE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHHhcCCceEEE
Confidence            67999999996 5999999999999999999999999999999998875432  2221   1110      124689999


Q ss_pred             ECCCC
Q 012866          369 NATPL  373 (454)
Q Consensus       369 nat~~  373 (454)
                      |+...
T Consensus        83 nnAG~   87 (242)
T d1ulsa_          83 HYAGI   87 (242)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            98754

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=9.2e-05  Score=63.80  Aligned_cols=115  Identities=23%  Similarity=0.251  Sum_probs=78.6

Q ss_pred             CCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      +.+++||+|+|+|.+. .||.++.-|.+.|+.|++++......++                  ...++|++|.+++.   
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~~l~~------------------~~~~aDivi~a~G~---   92 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTAHLDE------------------EVNKGDILVVATGQ---   92 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCSSHHH------------------HHTTCSEEEECCCC---
T ss_pred             CcccccceEEEEecCCccchHHHHHHHhccCceEEEecccccHHH------------------HHhhccchhhcccc---
Confidence            4789999999999885 6999999999999999999975333221                  23568999988864   


Q ss_pred             CCCCCCCCChhcccCCcEEEEEecCCCCCHHH------------HHHHHC-CC--ceeccHH-----HHHHHHHHHHHHh
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAVYTPRKTRLL------------KDAEAA-GA--IIVSGVE-----MFLRQAIGQFNLF  436 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll------------~~A~~~-G~--~~~~Gl~-----mlv~Qa~~~f~lw  436 (454)
                      |+    .+..++++++.+|+|+-.++.+..-.            ..++++ .+  ++-.|.+     ||+...+.+.+-|
T Consensus        93 ~~----~i~~~~vk~g~iviDvgi~~~~~~~~~~~~~~~gdvd~~~v~~~a~~~TPvPGGVGp~Tva~L~~N~v~a~~r~  168 (170)
T d1a4ia1          93 PE----MVKGEWIKPGAIVIDCGINYVPDDKKPNGRKVVGDVAYDEAKERASFITPVPGGVGPMTVAMLMQSTVESAKRF  168 (170)
T ss_dssp             TT----CBCGGGSCTTCEEEECCCBC----------CCBCSBCHHHHTTTCSEECCSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cc----ccccccccCCCeEeccCcccccccccCCCCEEecccchHhhhhhceEeCCCCCchhHHHHHHHHHHHHHHHHHh
Confidence            22    47789999999999998664321100            222222 21  1222554     8888877777766


Q ss_pred             c
Q 012866          437 T  437 (454)
Q Consensus       437 ~  437 (454)
                      .
T Consensus       169 l  169 (170)
T d1a4ia1         169 L  169 (170)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=1.7e-05  Score=72.80  Aligned_cols=74  Identities=24%  Similarity=0.280  Sum_probs=57.6

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      .++||.++|.|+ +|+|++++..|++.|++|++.+|+.+++++++++++...    .++.+   ++++      .....|
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~id   82 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGKAMAAELADAARYVHLDVTQPAQWKAAVDTAVTAFGGLH   82 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhCcceEEEeecCCHHHHHHHHHHHHHHhCCCe
Confidence            478999999997 599999999999999999999999999999999986532    22211   1110      124579


Q ss_pred             EEEECCCC
Q 012866          366 ILANATPL  373 (454)
Q Consensus       366 ivInat~~  373 (454)
                      ++||+...
T Consensus        83 ilinnAG~   90 (244)
T d1nffa_          83 VLVNNAGI   90 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99998754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.80  E-value=1.1e-05  Score=68.71  Aligned_cols=87  Identities=16%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-ccccccccCCCCccEEEECCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-PFEDILNFQPEKGAILANATPLGMHPNTDRVP  383 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-~~~~l~~~~~~~~divInat~~g~~p~~~~~~  383 (454)
                      ++.+||+|-+|.+++..|.+.|.+|++++|+.+++++++++++.... +.+++    ..++|+||-|++....+.     
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~----~~~~dvIilavkp~~~~~-----   72 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDL----IDQVDLVILGIKPQLFET-----   72 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHH----HHTCSEEEECSCGGGHHH-----
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhh----hhccceeeeecchHhHHH-----
Confidence            58899999999999999999999999999999999999999876542 22232    346899998885321111     


Q ss_pred             CChhcccCCcEEEEEecC
Q 012866          384 VSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       384 i~~~~l~~~~~v~D~~y~  401 (454)
                      + ...+.++.+++++.-.
T Consensus        73 v-l~~l~~~~~iis~~ag   89 (152)
T d2ahra2          73 V-LKPLHFKQPIISMAAG   89 (152)
T ss_dssp             H-HTTSCCCSCEEECCTT
T ss_pred             H-hhhcccceeEeccccc
Confidence            1 0124556777777643

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.79  E-value=2.9e-05  Score=71.46  Aligned_cols=77  Identities=16%  Similarity=0.180  Sum_probs=58.0

Q ss_pred             CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------C
Q 012866          298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------Q  360 (454)
Q Consensus       298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~  360 (454)
                      -..+++|.+||.|+ +|+|++++..|++.|++|.+++|+.++++++++++..   +.    .++.+   +.++      .
T Consensus         5 ~f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   84 (251)
T d2c07a1           5 YYCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTE   84 (251)
T ss_dssp             CCCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHh
Confidence            35789999999997 5999999999999999999999999999999887743   21    12211   1110      2


Q ss_pred             CCCccEEEECCCCC
Q 012866          361 PEKGAILANATPLG  374 (454)
Q Consensus       361 ~~~~divInat~~g  374 (454)
                      ....|++||+....
T Consensus        85 ~g~iDilvnnag~~   98 (251)
T d2c07a1          85 HKNVDILVNNAGIT   98 (251)
T ss_dssp             CSCCCEEEECCCCC
T ss_pred             cCCceeeeeccccc
Confidence            35689999977543

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=2.8e-05  Score=71.58  Aligned_cols=74  Identities=26%  Similarity=0.367  Sum_probs=56.8

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc---cccc---ccccc------CCCCccE
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA---RPFE---DILNF------QPEKGAI  366 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~---~~~~---~l~~~------~~~~~di  366 (454)
                      .++||.+||.|+ +|+|++++..|++.|++|++++|+.+++++++++++...   +++.   +++++      .....|+
T Consensus         3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iDi   82 (250)
T d1ydea1           3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGGRALEQELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDC   82 (250)
T ss_dssp             TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCCCeEEEccCCCHHHHHHHHHHHHHhcCCCCE
Confidence            478999999997 599999999999999999999999999999998876421   2221   11110      1246799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        83 lVnnAG~   89 (250)
T d1ydea1          83 VVNNAGH   89 (250)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9998753

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.77  E-value=3.3e-05  Score=66.16  Aligned_cols=101  Identities=17%  Similarity=0.136  Sum_probs=67.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      |+.|||+|-+|.+++.+|.+.|.+|++++|+.+++++..+ .+......++++  .++++|+||-|+|.+....    .+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~-~~~~~~~~~~~~--~~~~~DiIilavp~~~~~~----vl   74 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVE-RQLVDEAGQDLS--LLQTAKIIFLCTPIQLILP----TL   74 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-TTSCSEEESCGG--GGTTCSEEEECSCHHHHHH----HH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHH-hhccceeeeecc--cccccccccccCcHhhhhh----hh
Confidence            5899999999999999999999999999999888776543 332111122332  3467999999998542110    11


Q ss_pred             C--hhcccCCcEEEEEecCCCCCHHHHHHHHC
Q 012866          385 S--EETLRDYQLVFDAVYTPRKTRLLKDAEAA  414 (454)
Q Consensus       385 ~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~~  414 (454)
                      .  ...++++.++.|+.-.  .....+..++.
T Consensus        75 ~~l~~~l~~~~iv~~~~s~--~~~~~~~~~~~  104 (165)
T d2f1ka2          75 EKLIPHLSPTAIVTDVASV--KTAIAEPASQL  104 (165)
T ss_dssp             HHHGGGSCTTCEEEECCSC--CHHHHHHHHHH
T ss_pred             hhhhhhcccccceeecccc--chHHHHHHHHh
Confidence            1  1246778899998643  34444555443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.77  E-value=2.1e-05  Score=68.20  Aligned_cols=70  Identities=21%  Similarity=0.261  Sum_probs=53.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC----c--------cccccccccCCCCccEEEECC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA----A--------RPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~----~--------~~~~~l~~~~~~~~divInat  371 (454)
                      |++.|||+|.+|.+++..|++.|++|++++|++++.+.+.+.-...    .        ....++.+ .++++|+||.|+
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~~~aD~iii~v   80 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGL-AVKDADVILIVV   80 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHH-HHTTCSEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHh-HhcCCCEEEEEE
Confidence            7899999999999999999999999999999999988876542110    0        00112222 356799999999


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      +..
T Consensus        81 ~~~   83 (184)
T d1bg6a2          81 PAI   83 (184)
T ss_dssp             CGG
T ss_pred             chh
Confidence            864

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=97.75  E-value=2e-05  Score=72.73  Aligned_cols=73  Identities=19%  Similarity=0.256  Sum_probs=57.3

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc----cccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR----PFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~----~~~~---l~~~------~~~~~di  366 (454)
                      ++||.+||.|+ +|+|++++..|++.|++|.+++|+.+++++++++++....    ++.+   ++++      .....|+
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDi   83 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGERSMFVRHDVSSEADWTLVMAAVQRRLGTLNV   83 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCTTEEEECCCTTCHHHHHHHHHHHHHHHCSCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCeEEEEeecCCHHHHHHHHHHHHHHhCCCCe
Confidence            78999999996 5999999999999999999999999999999999975431    2211   1110      1246799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        84 lVnnAG~   90 (253)
T d1hxha_          84 LVNNAGI   90 (253)
T ss_dssp             EEECCCC
T ss_pred             EEecccc
Confidence            9998754

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.74  E-value=3.7e-05  Score=66.92  Aligned_cols=96  Identities=20%  Similarity=0.183  Sum_probs=67.7

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-c---cccc----------------------
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-R---PFED----------------------  355 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~---~~~~----------------------  355 (454)
                      ...+|+|||+|-+|..++.....+|++|++++.+.++.+++-+.++... .   ..++                      
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~  107 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEA  107 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHH
Confidence            4579999999999999999999999999999999999888866543211 0   0000                      


Q ss_pred             ccccCCCCccEEEECCCCCCCCCCCCCCCChhc---ccCCcEEEEEec
Q 012866          356 ILNFQPEKGAILANATPLGMHPNTDRVPVSEET---LRDYQLVFDAVY  400 (454)
Q Consensus       356 l~~~~~~~~divInat~~g~~p~~~~~~i~~~~---l~~~~~v~D~~y  400 (454)
                      +.+ .+.++|+||.|.-+.-.+  .+..+.++.   ++++.+++|+.-
T Consensus       108 l~~-~l~~aDlVI~talipG~~--aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         108 VLK-ELVKTDIAITTALIPGKP--APVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHH-HHTTCSEEEECCCCTTSC--CCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHH-HHHhhhhheeeeecCCcc--cceeehHHHHHhcCCCcEEEEEee
Confidence            111 256799999877432111  223466664   578999999975

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=97.71  E-value=4.5e-05  Score=70.14  Aligned_cols=74  Identities=22%  Similarity=0.238  Sum_probs=56.6

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC--c----ccccc---cccc------CCCCc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA--A----RPFED---ILNF------QPEKG  364 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~--~----~~~~~---l~~~------~~~~~  364 (454)
                      ++||.+||.|+ +|+|++++..|++.|++|.+++|+.+++++++++++..  .    .++.+   +.++      .....
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i   83 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPV   83 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCc
Confidence            78999999996 59999999999999999999999999999999888531  1    12211   1110      12467


Q ss_pred             cEEEECCCCC
Q 012866          365 AILANATPLG  374 (454)
Q Consensus       365 divInat~~g  374 (454)
                      |++||+....
T Consensus        84 DiLVnnAg~~   93 (251)
T d1zk4a1          84 STLVNNAGIA   93 (251)
T ss_dssp             CEEEECCCCC
T ss_pred             eEEEeccccc
Confidence            9999987543

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.71  E-value=2.2e-05  Score=73.30  Aligned_cols=47  Identities=23%  Similarity=0.449  Sum_probs=43.1

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ++||+++|.|+ +|+|++++..|++.|++|++++|+.++++++++++.
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~   49 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQIL   49 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            67999999997 599999999999999999999999999999887763

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=97.71  E-value=2.1e-05  Score=73.58  Aligned_cols=73  Identities=25%  Similarity=0.288  Sum_probs=56.7

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc----ccccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      ++||.+||.|+ +|+|++++..|++.|++|.+++|+.++++++.++++...    .++.+   ++++      .....|+
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~idi   82 (276)
T d1bdba_           3 LKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAERLAELETDHGDNVLGIVGDVRSLEDQKQAASRCVARFGKIDT   82 (276)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGEEEEECCTTCHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCeeEEecccccHHHHHHHHHHHHHHhCCccc
Confidence            67999999996 599999999999999999999999999999999887543    12211   1110      1246799


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        83 lvnnAG~   89 (276)
T d1bdba_          83 LIPNAGI   89 (276)
T ss_dssp             EECCCCC
T ss_pred             ccccccc
Confidence            9997754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=3.5e-05  Score=71.23  Aligned_cols=48  Identities=25%  Similarity=0.329  Sum_probs=44.2

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .++||.|||.|++ |+|++++..|++.|++|++++|+.++++++++++.
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~   55 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECK   55 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            3889999999975 99999999999999999999999999999988774

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.69  E-value=2.4e-05  Score=67.67  Aligned_cols=43  Identities=26%  Similarity=0.358  Sum_probs=39.8

Q ss_pred             eEEEE-ccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          305 MFVLA-GAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       305 ~vlVi-GaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      |+.|+ |+|++|++++..|++.|++|++++|+++++++++++++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~   45 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYR   45 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            47788 78999999999999999999999999999999988775

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=9.2e-05  Score=63.22  Aligned_cols=94  Identities=22%  Similarity=0.278  Sum_probs=68.2

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCccccccccccCCCCccEEEECCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~~~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      +..+.||+++|+|.|-.||.+|..|+.+|++|+++++++-+|-+  ..+. ....++++    .+..+|++|.||.-  .
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~--A~~dG~~v~~~~~----a~~~adivvtaTGn--~   90 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQ--AAMEGYEVTTMDE----ACQEGNIFVTTTGC--I   90 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH--HHHTTCEECCHHH----HTTTCSEEEECSSC--S
T ss_pred             CceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHH--hhcCceEeeehhh----hhhhccEEEecCCC--c
Confidence            46789999999999999999999999999999999999877543  3332 23334433    34568999998852  1


Q ss_pred             CCCCCCCCChh---cccCCcEEEEEecCCCC
Q 012866          377 PNTDRVPVSEE---TLRDYQLVFDAVYTPRK  404 (454)
Q Consensus       377 p~~~~~~i~~~---~l~~~~~v~D~~y~P~~  404 (454)
                           ..+..+   .++++.++..+-....+
T Consensus        91 -----~vI~~eh~~~MKdgaIL~N~Ghfd~E  116 (163)
T d1li4a1          91 -----DIILGRHFEQMKDDAIVCNIGHFDVE  116 (163)
T ss_dssp             -----CSBCHHHHTTCCTTEEEEECSSSTTS
T ss_pred             -----cchhHHHHHhccCCeEEEEeccccce
Confidence                 125554   35677888887554443

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=97.66  E-value=2.3e-05  Score=71.80  Aligned_cols=73  Identities=21%  Similarity=0.202  Sum_probs=57.0

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc----cccc---cccc------CCCCccE
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR----PFED---ILNF------QPEKGAI  366 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~----~~~~---l~~~------~~~~~di  366 (454)
                      ++||++||.|++ |.|++++..|++.|++|++..|+.++++++.++++.+..    ++.+   ++++      .....|+
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g~iDi   82 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLLAEAVAALEAEAIAVVADVSDPKAVEAVFAEALEEFGRLHG   82 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCSSEEEEECCTTSHHHHHHHHHHHHHHHSCCCE
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCceEEEEecCCCHHHHHHHHHHHHHHhCCccE
Confidence            789999999975 899999999999999999999999999999999876431    2211   1110      1246899


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        83 LinnAg~   89 (241)
T d2a4ka1          83 VAHFAGV   89 (241)
T ss_dssp             EEEGGGG
T ss_pred             ecccccc
Confidence            9997643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=97.65  E-value=3.6e-05  Score=71.24  Aligned_cols=47  Identities=23%  Similarity=0.463  Sum_probs=43.5

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ++||.+||.|+ +|+|++++..|++.|++|++++|+.++++++++++.
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~   50 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREALEKAEASVR   50 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            78999999997 599999999999999999999999999999888774

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.64  E-value=0.00029  Score=63.62  Aligned_cols=129  Identities=16%  Similarity=0.156  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF  353 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~  353 (454)
                      +.|...+++..+....       ...+++|++|+|-|.|.+|+.++..|.+.|++|++++.+..+...+....+....+.
T Consensus        17 g~GV~~~~~~~~~~~~-------g~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~   89 (230)
T d1leha1          17 AYGVYRGMKAAAKEAF-------GSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAP   89 (230)
T ss_dssp             HHHHHHHHHHHHHHHH-------SSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCG
T ss_pred             HHHHHHHHHHHHHHhc-------CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCC
Confidence            5677777765553210       124689999999999999999999999999999999999999998888887766555


Q ss_pred             ccccccCCCCccEEEECCCCCCCCCCCCCCCChh---cccCCcEEEEEecCCCCCH-HHHHHHHCCCceecc
Q 012866          354 EDILNFQPEKGAILANATPLGMHPNTDRVPVSEE---TLRDYQLVFDAVYTPRKTR-LLKDAEAAGAIIVSG  421 (454)
Q Consensus       354 ~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~---~l~~~~~v~D~~y~P~~T~-ll~~A~~~G~~~~~G  421 (454)
                      +++-   ...+||++-|.--+.        |..+   .++ ..+|+.-.-+|..|| -.+.-+++|+.+++-
T Consensus        90 ~~~~---~~~cDIl~PcA~~~~--------I~~~~~~~l~-ak~Ive~ANn~~t~~ea~~~L~~rGI~~iPD  149 (230)
T d1leha1          90 NAIY---GVTCDIFAPCALGAV--------LNDFTIPQLK-AKVIAGSADNQLKDPRHGKYLHELGIVYAPD  149 (230)
T ss_dssp             GGTT---TCCCSEEEECSCSCC--------BSTTHHHHCC-CSEECCSCSCCBSSHHHHHHHHHHTCEECCH
T ss_pred             cccc---cccccEecccccccc--------cChHHhhccC-ccEEEecccCCCCCchHHHHHHhhCcEEEee
Confidence            5543   246899997765432        2322   233 467888887777664 445567789877653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.63  E-value=7e-05  Score=61.69  Aligned_cols=118  Identities=17%  Similarity=0.210  Sum_probs=78.3

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc-----ccccccccCCCCccEEEECCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR-----PFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~-----~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      +|+|+|+|..|+.++..|.+.|.+|+++++++++.++++++++...+     +.+-+.+..+.++|.++.+|+-.     
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d-----   76 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKE-----   76 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCH-----
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcH-----
Confidence            68999999999999999999999999999999999999888764332     22223333467899999887631     


Q ss_pred             CCCCCCh----hcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHHHHHHHH
Q 012866          380 DRVPVSE----ETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFLRQAIGQ  432 (454)
Q Consensus       380 ~~~~i~~----~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv~Qa~~~  432 (454)
                       +..+..    ..+.+..++ =.+.+|..   .+..++.|...+=--+++..+.+.+
T Consensus        77 -~~N~~~~~~~k~~~~~~iI-~~~~~~~~---~~~l~~~G~d~vi~p~~~~a~~i~~  128 (132)
T d1lssa_          77 -EVNLMSSLLAKSYGINKTI-ARISEIEY---KDVFERLGVDVVVSPELIAANYIEK  128 (132)
T ss_dssp             -HHHHHHHHHHHHTTCCCEE-EECSSTTH---HHHHHHTTCSEEECHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHcCCceEE-EEecCHHH---HHHHHHCCCCEEECHHHHHHHHHHH
Confidence             111111    113344443 34555544   4566788985433356666665543

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.62  E-value=7.4e-05  Score=71.29  Aligned_cols=89  Identities=16%  Similarity=0.152  Sum_probs=66.2

Q ss_pred             CceEEEEccchhHHHHHHHHHH-CCC-eEEEEeCCHHHHHHHHHHhcCCcccc-ccccccCCCCccEEEECCCCCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKS-RGA-RVVIFDIDFERAKSLASDVMGAARPF-EDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~-~G~-~v~i~nRt~~~a~~la~~~~~~~~~~-~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .+++.|+|+|..|+.-+.+|.. ... +|.|++|+.++++++++++....... .+..+ ...++|+||.||+.. .|  
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~-a~~~aDiV~taT~s~-~P--  200 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAE-EASRCDVLVTTTPSR-KP--  200 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHH-HHTSSSEEEECCCCS-SC--
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhh-hhccccEEEEeccCc-cc--
Confidence            4689999999999999999875 566 89999999999999998875432211 11122 346799999999852 23  


Q ss_pred             CCCCCChhcccCCcEEEEE
Q 012866          380 DRVPVSEETLRDYQLVFDA  398 (454)
Q Consensus       380 ~~~~i~~~~l~~~~~v~D~  398 (454)
                         .+..++++++..+.=+
T Consensus       201 ---~~~~~~l~~G~hv~~i  216 (320)
T d1omoa_         201 ---VVKAEWVEEGTHINAI  216 (320)
T ss_dssp             ---CBCGGGCCTTCEEEEC
T ss_pred             ---ccchhhcCCCCeEeec
Confidence               3677889888766555

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.60  E-value=7.5e-05  Score=59.88  Aligned_cols=74  Identities=18%  Similarity=0.060  Sum_probs=49.8

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHH-HHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAK-SLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~-~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      .+++||+|+|+|+|.+|.+-+..|.+.|++|++++.+..... .+++.-..... -.......+.++++++.+|.-
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~-~~~~~~~dl~~~~lv~~at~d   82 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLV-EGPFDETLLDSCWLAIAATDD   82 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEE-ESSCCGGGGTTCSEEEECCSC
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceee-ccCCCHHHhCCCcEEeecCCC
Confidence            468899999999999999999999999999999998765432 33322111110 001111124567889888753

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.59  E-value=9.2e-05  Score=63.00  Aligned_cols=95  Identities=22%  Similarity=0.264  Sum_probs=69.8

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC-CccccccccccCCCCccEEEECCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG-AARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~-~~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      +.-+.||+++|+|-|-.||.+|..|+.+|++|+|+.+++-+|-+-  .+.. +..++++    .++.+|++|.||.-  .
T Consensus        18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA--~mdGf~v~~~~~----a~~~aDi~vTaTGn--~   89 (163)
T d1v8ba1          18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQA--VMEGFNVVTLDE----IVDKGDFFITCTGN--V   89 (163)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHH--HTTTCEECCHHH----HTTTCSEEEECCSS--S
T ss_pred             CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHH--HhcCCccCchhH----ccccCcEEEEcCCC--C
Confidence            467899999999999999999999999999999999999775543  3322 2333333    35678999999952  1


Q ss_pred             CCCCCCCCChh---cccCCcEEEEEecCCCCC
Q 012866          377 PNTDRVPVSEE---TLRDYQLVFDAVYTPRKT  405 (454)
Q Consensus       377 p~~~~~~i~~~---~l~~~~~v~D~~y~P~~T  405 (454)
                      +     .+..+   .++.+.++..+-....+-
T Consensus        90 ~-----vI~~~h~~~MKdgaIl~N~GHfd~EI  116 (163)
T d1v8ba1          90 D-----VIKLEHLLKMKNNAVVGNIGHFDDEI  116 (163)
T ss_dssp             S-----SBCHHHHTTCCTTCEEEECSSTTTSB
T ss_pred             c-----cccHHHHHHhhCCeEEEeccccchhh
Confidence            1     24544   356778888887665543

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=97.57  E-value=5.9e-05  Score=69.51  Aligned_cols=72  Identities=18%  Similarity=0.189  Sum_probs=53.8

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CCCCcc
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~~~~d  365 (454)
                      ||.+||.|+ +|+|++++..|++.|++|.+++|+.++++++++++..   +.    .++.+   ++++      .....|
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~iD   81 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPVD   81 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCCC
Confidence            788899996 4999999999999999999999999999998887642   21    12211   1110      235689


Q ss_pred             EEEECCCCC
Q 012866          366 ILANATPLG  374 (454)
Q Consensus       366 ivInat~~g  374 (454)
                      ++||+....
T Consensus        82 ilVnnAG~~   90 (257)
T d2rhca1          82 VLVNNAGRP   90 (257)
T ss_dssp             EEEECCCCC
T ss_pred             EEEeccccc
Confidence            999987543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=6.5e-05  Score=69.13  Aligned_cols=46  Identities=28%  Similarity=0.471  Sum_probs=42.2

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      +||.+||.|+ +|+|++++..|++.|++|.+++|+.++.+++++++.
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~   48 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALH   48 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            5899999997 599999999999999999999999999998888764

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=3e-05  Score=70.60  Aligned_cols=70  Identities=20%  Similarity=0.162  Sum_probs=51.2

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccc----cccccCCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFE----DILNFQPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~----~l~~~~~~~~divInat~~  373 (454)
                      ++||++||.|+ +|+|++++..|++.|++|.+++|+.++.++...++-  ..++.    .+.+ ...+.|++||+...
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~l~~~~~~~~--~~Dv~~~~~~~~~-~~g~iD~lVnnAG~   76 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEELLKRSGHRYV--VCDLRKDLDLLFE-KVKEVDILVLNAGG   76 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHTCSEEE--ECCTTTCHHHHHH-HSCCCSEEEECCCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHhcCCcEE--EcchHHHHHHHHH-HhCCCcEEEecccc
Confidence            67999999996 599999999999999999999999887665433221  11221    1222 34678999998753

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.55  E-value=4.1e-05  Score=67.18  Aligned_cols=118  Identities=19%  Similarity=0.272  Sum_probs=84.3

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.++++.|+|.|..|+.++..+...|++|..++|...+....  ..+....+++   + .++++|+|+.+.|..  +
T Consensus        39 ~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~~~~--~~~~~~~~l~---e-ll~~sDiv~~~~Plt--~  110 (184)
T d1ygya1          39 GTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA--QLGIELLSLD---D-LLARADFISVHLPKT--P  110 (184)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHH--HHTCEECCHH---H-HHHHCSEEEECCCCS--T
T ss_pred             cccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChhHHh--hcCceeccHH---H-HHhhCCEEEEcCCCC--c
Confidence            346789999999999999999999999999999999976554332  2222223333   3 345689999999874  3


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHH
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                      .+ ...++.+.   ++++.+++.+.-.+. +..-+.+|-+.|...--|+|.
T Consensus       111 ~T-~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV  160 (184)
T d1ygya1         111 ET-AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV  160 (184)
T ss_dssp             TT-TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred             hh-hhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeC
Confidence            32 23577654   467889999888766 566777777777665555554

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.54  E-value=0.00023  Score=60.74  Aligned_cols=78  Identities=13%  Similarity=0.178  Sum_probs=58.3

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc--------cccccccccCCCCccEEE
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--------RPFEDILNFQPEKGAILA  368 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~~~~~~divI  368 (454)
                      .....+|+.|||+|.+|.++++.|...|.  ++.+++++.++++..+.++....        ....+.+  ...++|+||
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~--~~~~adiVV   93 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYS--VTANSKIVV   93 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGG--GGTTCSEEE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchh--hcccccEEE
Confidence            34567899999999999999999999996  89999999999988877764211        1112232  356799999


Q ss_pred             ECCCCCCCCC
Q 012866          369 NATPLGMHPN  378 (454)
Q Consensus       369 nat~~g~~p~  378 (454)
                      .|......|.
T Consensus        94 itAg~~~~~g  103 (160)
T d1i0za1          94 VTAGVRQQEG  103 (160)
T ss_dssp             ECCSCCCCTT
T ss_pred             EecCCccccC
Confidence            8887654443

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=97.52  E-value=7.5e-05  Score=68.95  Aligned_cols=49  Identities=20%  Similarity=0.163  Sum_probs=44.7

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ++++||+|||.|+ +|+|++++..|++.|++|.+++|+.++++++++++.
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~   51 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELDECLEIWR   51 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            4689999999995 699999999999999999999999999998887764

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=97.52  E-value=7.5e-05  Score=68.94  Aligned_cols=49  Identities=18%  Similarity=0.173  Sum_probs=45.2

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ++++||.+||.|++ |+|++++..|++.|++|++++|+.++++++++++.
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~   53 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKELNDCLTQWR   53 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            57899999999975 99999999999999999999999999999988774

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.52  E-value=7.4e-05  Score=65.31  Aligned_cols=104  Identities=13%  Similarity=0.076  Sum_probs=72.8

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNT  379 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~  379 (454)
                      .+.|+++.|+|.|.+|+.++..+...|++|+.++|+....         .....+++++ .+.++|+|+.++|..  |. 
T Consensus        39 ~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~---------~~~~~~~l~e-ll~~sDiv~~~~pl~--~~-  105 (181)
T d1qp8a1          39 LIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG---------PWRFTNSLEE-ALREARAAVCALPLN--KH-  105 (181)
T ss_dssp             CCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS---------SSCCBSCSHH-HHTTCSEEEECCCCS--TT-
T ss_pred             cccCceEEEeccccccccceeeeecccccccccccccccc---------ceeeeechhh-hhhccchhhcccccc--cc-
Confidence            4789999999999999999999999999999999985421         1112234444 457899999999974  33 


Q ss_pred             CCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCC
Q 012866          380 DRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGA  416 (454)
Q Consensus       380 ~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~  416 (454)
                      ....++.+.   ++++.+++++.-.+. ++.-|.+|-+.|.
T Consensus       106 t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~  146 (181)
T d1qp8a1         106 TRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERP  146 (181)
T ss_dssp             TTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCT
T ss_pred             cccccccceeeeccccceEEeccccccccchhhhhhcccCc
Confidence            223466654   578899999875443 3444444545443

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=6.2e-05  Score=68.74  Aligned_cols=50  Identities=24%  Similarity=0.333  Sum_probs=45.8

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA  349 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~  349 (454)
                      +++||.+||.|+ +|+|++++..|++.|++|++++|+.+++++++++++..
T Consensus         2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~   52 (248)
T d2o23a1           2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGGEAQAKKLGNN   52 (248)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSHHHHHHHHCTT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHhCCC
Confidence            478999999996 59999999999999999999999999999999988653

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=3.7e-05  Score=70.51  Aligned_cols=72  Identities=25%  Similarity=0.337  Sum_probs=54.9

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccc--c----ccccCCCCccEEEECC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFE--D----ILNFQPEKGAILANAT  371 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~--~----l~~~~~~~~divInat  371 (454)
                      ++||++||.|+ +|+|++++..|++.|++|.+++|++++++++++..+...  .+..  +    ... .....|++||+.
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~id~lVn~a   82 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKLQELEKYPGIQTRVLDVTKKKQIDQFAN-EVERLDVLFNVA   82 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHGGGGGSTTEEEEECCTTCHHHHHHHHH-HCSCCSEEEECC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhccCCceeeeecccccccccccc-ccccceeEEecc
Confidence            78999999996 599999999999999999999999999988877665432  1111  1    111 235679999986


Q ss_pred             CC
Q 012866          372 PL  373 (454)
Q Consensus       372 ~~  373 (454)
                      ..
T Consensus        83 g~   84 (245)
T d2ag5a1          83 GF   84 (245)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.49  E-value=0.00013  Score=61.43  Aligned_cols=74  Identities=23%  Similarity=0.293  Sum_probs=52.9

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~~  373 (454)
                      .+|+.|||+|..|.++++.|+..|.  +|++++++.++++..+.++....       ..-.+.+  ...++|+||.|...
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~--~~~~adivvitag~   82 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS--DCKDADLVVITAGA   82 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG--GGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH--HhccccEEEEeccc
Confidence            4689999999999999999999884  89999999999888776664210       1111233  24679999998876


Q ss_pred             CCCCC
Q 012866          374 GMHPN  378 (454)
Q Consensus       374 g~~p~  378 (454)
                      ...|.
T Consensus        83 ~~~~g   87 (146)
T d1ez4a1          83 PQKPG   87 (146)
T ss_dssp             -----
T ss_pred             ccCCC
Confidence            55553

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.49  E-value=0.00019  Score=60.50  Aligned_cols=75  Identities=20%  Similarity=0.243  Sum_probs=56.2

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC------c--cccccccccCCCCccEEEECC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA------A--RPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~------~--~~~~~l~~~~~~~~divInat  371 (454)
                      .++|+.|||+|.+|.++++.|...|.  +|.++++++++++..+.++...      .  +...+.+  .+.++|+||.|.
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~--~l~daDvvvita   82 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYD--DCRDADLVVICA   82 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGG--GTTTCSEEEECC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHH--HhccceeEEEec
Confidence            36789999999999999999998885  8999999999988887766421      1  1112222  357899999988


Q ss_pred             CCCCCCC
Q 012866          372 PLGMHPN  378 (454)
Q Consensus       372 ~~g~~p~  378 (454)
                      ...-.|.
T Consensus        83 g~~~~~~   89 (148)
T d1ldna1          83 GANQKPG   89 (148)
T ss_dssp             SCCCCTT
T ss_pred             ccccccC
Confidence            7654443

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.49  E-value=8.8e-05  Score=68.15  Aligned_cols=75  Identities=23%  Similarity=0.311  Sum_probs=54.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh----cCCc----ccccc---cccc------CC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV----MGAA----RPFED---ILNF------QP  361 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~----~~~~----~~~~~---l~~~------~~  361 (454)
                      +++||.++|.|+ +|+|++++..|++.|++|.+++|+.++++++++++    +.+.    .++.+   ++++      ..
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKF   81 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            578999999997 59999999999999999999999999887766554    3332    12211   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus        82 g~iDiLVnnAG~~   94 (251)
T d1vl8a_          82 GKLDTVVNAAGIN   94 (251)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEEEECCCCC
Confidence            4689999987543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.47  E-value=3.4e-05  Score=68.05  Aligned_cols=70  Identities=17%  Similarity=0.188  Sum_probs=51.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc-CCc---ccc-------ccccccCCCCccEEEECC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM-GAA---RPF-------EDILNFQPEKGAILANAT  371 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~-~~~---~~~-------~~l~~~~~~~~divInat  371 (454)
                      -+++.|||+|..|.|++..|++.|.+|++|.|+.+.++++.+.-. ...   +.+       .++.+ .+.++|+||-|+
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~-a~~~ad~iiiav   85 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEK-AYNGAEIILFVI   85 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHH-HHTTCSCEEECS
T ss_pred             eceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhh-ccCCCCEEEEcC
Confidence            368999999999999999999999899999999999998865421 111   111       12233 345678888877


Q ss_pred             CC
Q 012866          372 PL  373 (454)
Q Consensus       372 ~~  373 (454)
                      |.
T Consensus        86 Ps   87 (189)
T d1n1ea2          86 PT   87 (189)
T ss_dssp             CH
T ss_pred             cH
Confidence            64

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.47  E-value=3.2e-05  Score=68.67  Aligned_cols=118  Identities=13%  Similarity=0.218  Sum_probs=81.0

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|+++.|+|.|.+|+.++..|...|++|..+++.......  .    .....+++.+ .+.++|+|+.+.|..-  
T Consensus        38 g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~--~----~~~~~~~l~~-~l~~sDii~~~~plt~--  108 (197)
T d1j4aa1          38 GREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE--K----KGYYVDSLDD-LYKQADVISLHVPDVP--  108 (197)
T ss_dssp             BCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH--H----TTCBCSCHHH-HHHHCSEEEECSCCCG--
T ss_pred             CccccCCeEEEecccccchhHHHhHhhhcccccccCcccccccc--c----ceeeeccccc-cccccccccccCCccc--
Confidence            35688999999999999999999999999999999987543221  1    1112334444 3457899999998742  


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      . ....+..+.   ++++.+++.+.-.+. +..-+.+|-+.|...--++|.+
T Consensus       109 ~-T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~  159 (197)
T d1j4aa1         109 A-NVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVY  159 (197)
T ss_dssp             G-GTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCC
T ss_pred             c-ccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeecc
Confidence            2 123466654   567888988877655 4555566666665544455544

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=97.46  E-value=0.00012  Score=67.14  Aligned_cols=73  Identities=23%  Similarity=0.312  Sum_probs=53.0

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCCc----ccccc---cccc------CCCCcc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAA----RPFED---ILNF------QPEKGA  365 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~~~~----~~~~~---l~~~------~~~~~d  365 (454)
                      ++||.++|.|+ +|+|++++..|++.|++|.+++|+. +.+++..+.++.+.    .++.+   ++.+      .....|
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~G~iD   82 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGRRVLTVKCDVSQPGDVEAFGKQVISTFGRCD   82 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence            68999999997 5999999999999999999999976 45666667766542    22221   1110      124689


Q ss_pred             EEEECCCC
Q 012866          366 ILANATPL  373 (454)
Q Consensus       366 ivInat~~  373 (454)
                      ++||+...
T Consensus        83 ilVnnAG~   90 (247)
T d2ew8a1          83 ILVNNAGI   90 (247)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCC
Confidence            99998654

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.45  E-value=6.2e-05  Score=66.52  Aligned_cols=118  Identities=15%  Similarity=0.195  Sum_probs=78.6

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.||++.|||.|.+|+.++..|...|++|..++|.......  ...+..  ..+++++ .+..+|+|+.+.|..  +
T Consensus        44 ~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~--~~~~~~--~~~~l~~-ll~~sD~i~~~~plt--~  116 (193)
T d1mx3a1          44 AARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVE--RALGLQ--RVSTLQD-LLFHSDCVTLHCGLN--E  116 (193)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHH--HHHTCE--ECSSHHH-HHHHCSEEEECCCCC--T
T ss_pred             ceeeeCceEEEeccccccccceeeeeccccceeeccCcccccch--hhhccc--cccchhh-ccccCCEEEEeeccc--c
Confidence            46689999999999999999999999999999999997554221  222221  2223333 345689999999864  2


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHH
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~  423 (454)
                      .+ ...++.+.   ++++.+++.+.-.+. ++.-+.+|-+.|-..--++|
T Consensus       117 ~T-~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lD  165 (193)
T d1mx3a1         117 HN-HHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALD  165 (193)
T ss_dssp             TC-TTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEES
T ss_pred             cc-hhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCceEEEEE
Confidence            22 23466553   567888888877665 45555556665554334444

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=7.7e-05  Score=69.16  Aligned_cols=46  Identities=30%  Similarity=0.505  Sum_probs=43.0

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++||++||.|++ |+|++++..|++.|++|++++|+.++.+++++++
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~l~~~~~~~   58 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETLQKVVSHC   58 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            899999999975 9999999999999999999999999999987765

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.44  E-value=8.7e-05  Score=68.52  Aligned_cols=49  Identities=16%  Similarity=0.124  Sum_probs=45.1

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ++++||++||.|+ +|+|++++..|++.|++|.+++|+.++++++++++.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~   53 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQ   53 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            5689999999997 499999999999999999999999999999988774

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.44  E-value=5.3e-05  Score=62.41  Aligned_cols=70  Identities=21%  Similarity=0.242  Sum_probs=52.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~  373 (454)
                      |+++|+|.|..|+.++..|.+.|.+|++++.++++++++.+.....    ..+.+.+.+..+.++|.+|-+++-
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCc
Confidence            5789999999999999999999999999999999999886543211    111222333245678998888863

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.40  E-value=8.8e-05  Score=62.96  Aligned_cols=105  Identities=21%  Similarity=0.286  Sum_probs=70.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPV  384 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i  384 (454)
                      |+-+||.|-||.+++..|.+.|. ++++||+.++++++++..+......+.     ..++|++|.+.+...    .....
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~~~~~~~----~v~~~   71 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFP-TLVWNRTFEKALRHQEEFGSEAVPLER-----VAEARVIFTCLPTTR----EVYEV   71 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSC-EEEECSSTHHHHHHHHHHCCEECCGGG-----GGGCSEEEECCSSHH----HHHHH
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCC-EEEEeCCHHHHHHHHHHcCCccccccc-----ccceeEEEecccchh----hhhhh
Confidence            58899999999999999998775 558999999999998887654333332     234688886665321    00000


Q ss_pred             Ch---hcccCCcEEEEEecC-CCCC-HHHHHHHHCCCcee
Q 012866          385 SE---ETLRDYQLVFDAVYT-PRKT-RLLKDAEAAGAIIV  419 (454)
Q Consensus       385 ~~---~~l~~~~~v~D~~y~-P~~T-~ll~~A~~~G~~~~  419 (454)
                      ..   +.+.++.+++|+... |..+ .+-++++++|+.++
T Consensus        72 ~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~l  111 (156)
T d2cvza2          72 AEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYL  111 (156)
T ss_dssp             HHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEE
T ss_pred             hccccccccccccccccccCCHHHHHHHHHHHHHcCCeEE
Confidence            11   234678899999876 4333 44466777776543

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=9.3e-05  Score=68.14  Aligned_cols=76  Identities=26%  Similarity=0.400  Sum_probs=57.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc----ccccc---cccc------CC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA----RPFED---ILNF------QP  361 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~---l~~~------~~  361 (454)
                      ..++||.++|.|+ +|+|++++..|++.|++|++++|+.++++++++++..   +.    .++.+   +.++      ..
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            4588999999997 5999999999999999999999999999999887742   21    12211   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus        87 g~iDilvnnAG~~   99 (255)
T d1fmca_          87 GKVDILVNNAGGG   99 (255)
T ss_dssp             SSCCEEEECCCCC
T ss_pred             CCCCEeeeCCcCC
Confidence            4689999987643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.39  E-value=0.00013  Score=66.98  Aligned_cols=71  Identities=25%  Similarity=0.358  Sum_probs=51.6

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCc----ccccc---cccc------CCCCccE
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM---GAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      |.+||.|+ +|+|++++..|++.|++|.+++|+.++++++++++.   .+.    +++.+   +.++      .....|+
T Consensus         2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   81 (255)
T d1gega_           2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV   81 (255)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred             CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence            44688886 499999999999999999999999999999987774   221    22221   1110      2356899


Q ss_pred             EEECCCCC
Q 012866          367 LANATPLG  374 (454)
Q Consensus       367 vInat~~g  374 (454)
                      +||+...+
T Consensus        82 lVnnAG~~   89 (255)
T d1gega_          82 IVNNAGVA   89 (255)
T ss_dssp             EEECCCCC
T ss_pred             EEeccccc
Confidence            99987543

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=97.39  E-value=7.6e-05  Score=69.02  Aligned_cols=75  Identities=24%  Similarity=0.387  Sum_probs=53.5

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhc---CCc----ccccc---cccc------CC
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVM---GAA----RPFED---ILNF------QP  361 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~---~~~----~~~~~---l~~~------~~  361 (454)
                      +++||.++|.|+ +|+|++++..|++.|++|.+..|+. ++++++++++.   .+.    +++.+   +.++      ..
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~   83 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEANSVLEEIKKVGGEAIAVKGDVTVESDVINLVQSAIKEF   83 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            588999999996 5999999999999999999999985 46777766653   221    12211   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus        84 G~iDiLVnnAG~~   96 (261)
T d1geea_          84 GKLDVMINNAGLE   96 (261)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCCCEeeccceec
Confidence            4679999987653

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=8.6e-05  Score=68.10  Aligned_cols=72  Identities=31%  Similarity=0.446  Sum_probs=52.9

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--cccc---cccc------CCCCccEEE
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--PFED---ILNF------QPEKGAILA  368 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~~~~---l~~~------~~~~~divI  368 (454)
                      ++||.+||.|+ +|+|++++..|++.|++|.+.+|+.++ .++++.++...+  ++.+   ++++      .....|++|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iDiLV   81 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-KEVAEAIGGAFFQVDLEDERERVRFVEEAAYALGRVDVLV   81 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-HHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHSCCCEEE
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-HHHHHHcCCeEEEEeCCCHHHHHHHHHHHHHhcCCCCeEE
Confidence            68999999996 599999999999999999999999765 556777665432  2211   1110      124679999


Q ss_pred             ECCCC
Q 012866          369 NATPL  373 (454)
Q Consensus       369 nat~~  373 (454)
                      |+...
T Consensus        82 nnAG~   86 (248)
T d2d1ya1          82 NNAAI   86 (248)
T ss_dssp             ECCCC
T ss_pred             EeCcC
Confidence            97654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.36  E-value=0.00011  Score=68.13  Aligned_cols=47  Identities=23%  Similarity=0.373  Sum_probs=43.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      ++||++||.|+ +|+|++++..|++.|++|++++|+.++++++++++.
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~   50 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERLEETRQIIL   50 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            78999999996 599999999999999999999999999999888773

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00044  Score=58.84  Aligned_cols=77  Identities=17%  Similarity=0.193  Sum_probs=57.9

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc--------cccccccccCCCCccEEEEC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA--------RPFEDILNFQPEKGAILANA  370 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~--------~~~~~l~~~~~~~~divIna  370 (454)
                      ....|+.|||+|..|.++++.|...|.  ++.+++++.++++..+.++....        ....+.+  ...++|+||.|
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~--~~~~adivvit   94 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYN--VSANSKLVIIT   94 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGG--GGTTEEEEEEC
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchh--hhccccEEEEe
Confidence            445689999999999999999999886  89999999999888877774211        1112222  34679999998


Q ss_pred             CCCCCCCCC
Q 012866          371 TPLGMHPNT  379 (454)
Q Consensus       371 t~~g~~p~~  379 (454)
                      ......|..
T Consensus        95 ag~~~~~~~  103 (159)
T d2ldxa1          95 AGARMVSGQ  103 (159)
T ss_dssp             CSCCCCTTT
T ss_pred             cccccCCCC
Confidence            877666653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=97.34  E-value=0.00017  Score=67.37  Aligned_cols=76  Identities=20%  Similarity=0.265  Sum_probs=56.3

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh----cCCc----ccccc---ccc------cC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV----MGAA----RPFED---ILN------FQ  360 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~----~~~~----~~~~~---l~~------~~  360 (454)
                      ..++||++||.|+ ||+|++++..|++.|++|++.+|+.++++++++++    +...    +++.+   +..      ..
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence            4689999999995 69999999999999999999999998887776655    3221    12211   111      02


Q ss_pred             CCCccEEEECCCCC
Q 012866          361 PEKGAILANATPLG  374 (454)
Q Consensus       361 ~~~~divInat~~g  374 (454)
                      ....|++||+...+
T Consensus       101 ~g~iDilvnnAg~~  114 (294)
T d1w6ua_         101 AGHPNIVINNAAGN  114 (294)
T ss_dssp             TCSCSEEEECCCCC
T ss_pred             ccccchhhhhhhhc
Confidence            35689999988654

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.34  E-value=0.00027  Score=60.41  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=67.0

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      |+++|||+|-+|.+++.+|.+.|.  +|+.++|+.+..+... +.+.......+........+|+||-|+|......   
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~---   77 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV-DLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFRE---   77 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH-HTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHH---
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH-HhhcchhhhhhhhhhhccccccccccCCchhhhh---
Confidence            479999999999999999999996  7999999987766543 3332111111111112246899999999642110   


Q ss_pred             CCCC--hhcccCCcEEEEEecCCCCCHHHHHHHH
Q 012866          382 VPVS--EETLRDYQLVFDAVYTPRKTRLLKDAEA  413 (454)
Q Consensus       382 ~~i~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~  413 (454)
                       .+.  ...++++.++.|+...  .++..+..++
T Consensus        78 -vl~~l~~~~~~~~ii~d~~s~--k~~~~~~~~~  108 (171)
T d2g5ca2          78 -IAKKLSYILSEDATVTDQGSV--KGKLVYDLEN  108 (171)
T ss_dssp             -HHHHHHHHSCTTCEEEECCSC--CTHHHHHHHH
T ss_pred             -hhhhhhccccccccccccccc--cHHHHHHHHH
Confidence             111  1246788999999865  3455555554

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.33  E-value=0.00031  Score=59.27  Aligned_cols=75  Identities=19%  Similarity=0.189  Sum_probs=55.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC------c--cccccccccCCCCccEEEECCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA------A--RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~------~--~~~~~l~~~~~~~~divInat~~  373 (454)
                      +.|+.|||+|..|.++++.|...+. ++.+++++.++++..+.++...      .  +...+..+ .+.++|+||.|...
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~-~~~~advvvitag~   81 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYD-DLAGADVVIVTAGF   81 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGG-GGTTCSEEEECCSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEeccccc-ccCCCcEEEEeccc
Confidence            3589999999999999999998888 9999999998888877666431      1  11111112 35779999999887


Q ss_pred             CCCCC
Q 012866          374 GMHPN  378 (454)
Q Consensus       374 g~~p~  378 (454)
                      ...|.
T Consensus        82 ~~~~g   86 (150)
T d1t2da1          82 TKAPG   86 (150)
T ss_dssp             SSCTT
T ss_pred             ccCCC
Confidence            66554

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00016  Score=68.03  Aligned_cols=48  Identities=31%  Similarity=0.461  Sum_probs=43.8

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .++||.+||.|+ +|+|++++..|++.|++|++++|+.++.+++++++.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~   57 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLKSAADELQ   57 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH
Confidence            489999999997 499999999999999999999999999988887763

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.32  E-value=0.00013  Score=67.28  Aligned_cols=46  Identities=28%  Similarity=0.418  Sum_probs=42.8

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++||.+||.|+ +|+|++++..|++.|++|.+++|+.++++++++++
T Consensus         3 l~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l   49 (264)
T d1spxa_           3 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQI   49 (264)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            68999999996 59999999999999999999999999999998876

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00018  Score=63.39  Aligned_cols=39  Identities=23%  Similarity=0.264  Sum_probs=35.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      |+|.|||+|-||+.+|..++..|++|++++++++..++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHH
Confidence            689999999999999999999999999999998765543

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.29  E-value=0.00064  Score=52.75  Aligned_cols=42  Identities=26%  Similarity=0.176  Sum_probs=33.3

Q ss_pred             CCceEEEEccchhHHHH-HHHHHHCCCeEEEEeCCHH-HHHHHH
Q 012866          302 AGRMFVLAGAGGAGRAL-AFGAKSRGARVVIFDIDFE-RAKSLA  343 (454)
Q Consensus       302 ~~k~vlViGaGG~arai-~~~L~~~G~~v~i~nRt~~-~a~~la  343 (454)
                      +.+++.+||-||+|.+. |..|.++|++|+-+++... ..+.|.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~   50 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLA   50 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHH
Confidence            46899999999999666 7888999999999998643 344443

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=97.29  E-value=0.00011  Score=67.64  Aligned_cols=74  Identities=14%  Similarity=0.144  Sum_probs=54.7

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh----cCCc----ccccc---c-------ccc
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV----MGAA----RPFED---I-------LNF  359 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~----~~~~----~~~~~---l-------~~~  359 (454)
                      .+++||++||.|++ |+|++++..|++.|++|++++|+.++++++++++    +.+.    +++.+   +       .+ 
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~-   83 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADAVEVTEKVGKEFGVKTKAYQCDVSNTDIVTKTIQQIDA-   83 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTHHHHHHHHHHHHTCCEEEEECCTTCHHHHHHHHHHHHH-
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhCCceEEEEccCCCHHHHHHHHHHHHH-
Confidence            46889999999975 9999999999999999999999988777665544    4332    12211   1       11 


Q ss_pred             CCCCccEEEECCCC
Q 012866          360 QPEKGAILANATPL  373 (454)
Q Consensus       360 ~~~~~divInat~~  373 (454)
                      .....|++||+...
T Consensus        84 ~~g~iDilVnnAg~   97 (260)
T d1h5qa_          84 DLGPISGLIANAGV   97 (260)
T ss_dssp             HSCSEEEEEECCCC
T ss_pred             HhCCCcEecccccc
Confidence            23568999998754

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=97.29  E-value=0.0002  Score=65.96  Aligned_cols=46  Identities=28%  Similarity=0.533  Sum_probs=41.9

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDV  346 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~  346 (454)
                      ++||.++|.|++ |+|++++..|++.|++|.+++|+.++++++++++
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~   48 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGLEASKAAV   48 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH
Confidence            679999999975 9999999999999999999999999988877665

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.26  E-value=0.00018  Score=61.08  Aligned_cols=76  Identities=14%  Similarity=0.135  Sum_probs=56.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC-------c-ccc-ccccccCCCCccEEEECC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA-------A-RPF-EDILNFQPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~-------~-~~~-~~l~~~~~~~~divInat  371 (454)
                      +.+|+.|||+|..|..+++.|+..+. ++.+++.+.++++..+.++...       . ... .+.++ ...++|+||.|.
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~adiVvita   84 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEA-ALTGADCVIVTA   84 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHH-HHTTCSEEEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhh-hhcCCCeEEEec
Confidence            46899999999999999999998887 9999999998888877665321       0 000 11122 346799999998


Q ss_pred             CCCCCCC
Q 012866          372 PLGMHPN  378 (454)
Q Consensus       372 ~~g~~p~  378 (454)
                      ..+-.|.
T Consensus        85 g~~~~~g   91 (154)
T d1pzga1          85 GLTKVPG   91 (154)
T ss_dssp             SCSSCTT
T ss_pred             ccccCCC
Confidence            7765554

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.23  E-value=0.00024  Score=67.98  Aligned_cols=91  Identities=15%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             CceEEEEccchhHHHHHHHHH-HCCC-eEEEEeCCHHHHHHHHHHhcCC----ccccccccccCCCCccEEEECCCCCCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAK-SRGA-RVVIFDIDFERAKSLASDVMGA----ARPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~-~~G~-~v~i~nRt~~~a~~la~~~~~~----~~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      .+++.|||+|..|+.-+.++. -++. +|.|++|++++++++++++...    ....+++++ .+.++|+|+.||+... 
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~e-av~~ADIi~t~Tas~s-  205 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAE-AVKGVDIITTVTADKA-  205 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHH-HHTTCSEEEECCCCSS-
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHH-HHhcCCceeeccccCC-
Confidence            478999999999998888875 5678 9999999999999999988532    122334444 5678999999886421 


Q ss_pred             CCCCCCCCChhcccCCcEEEEE
Q 012866          377 PNTDRVPVSEETLRDYQLVFDA  398 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~  398 (454)
                         ....+..+|++++..+.=+
T Consensus       206 ---~~Pv~~~~~l~pG~hI~ai  224 (340)
T d1x7da_         206 ---YATIITPDMLEPGMHLNAV  224 (340)
T ss_dssp             ---EEEEECGGGCCTTCEEEEC
T ss_pred             ---CCcccchhhcCCCCEEeec
Confidence               1113667788887655444

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.22  E-value=0.00015  Score=63.85  Aligned_cols=120  Identities=21%  Similarity=0.236  Sum_probs=80.0

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.|+++.|+|.|.+|+.++..|...|++|..+++..............   ..+++.+ .+..+|+|+.+.|..  +
T Consensus        42 ~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~---~~~~l~~-ll~~sD~v~l~~plt--~  115 (191)
T d1gdha1          42 GEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQAT---FHDSLDS-LLSVSQFFSLNAPST--P  115 (191)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCE---ECSSHHH-HHHHCSEEEECCCCC--T
T ss_pred             cceecccceEEeecccchHHHHHHHHhhccccccccccccccchhhccccc---ccCCHHH-HHhhCCeEEecCCCC--c
Confidence            356789999999999999999999999999999999875543332222111   1223333 345689999999874  3


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHH
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                      .+ ...++.+.   ++++.+++.+.-.+. ++.-+-+|-+.|...--++|.
T Consensus       116 ~T-~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a~lDV  165 (191)
T d1gdha1         116 ET-RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV  165 (191)
T ss_dssp             TT-TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESC
T ss_pred             hH-hheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEEEEEC
Confidence            32 23466554   567888888876655 455556666666554444543

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.00026  Score=60.63  Aligned_cols=72  Identities=14%  Similarity=0.072  Sum_probs=53.9

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc---cccccCCCCccEEEECCCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE---DILNFQPEKGAILANATPLG  374 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~---~l~~~~~~~~divInat~~g  374 (454)
                      .|.+|+|+|+|++|..++..++.+|++|++++++++|.+ +++++|... +...   +..+.....+|.++++++.+
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~-~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~  102 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKRE-DAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL  102 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHH-HHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHH-HhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence            578999999999999999988899999999999988865 567787642 2221   11111345689999987654

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.22  E-value=0.0017  Score=49.47  Aligned_cols=86  Identities=13%  Similarity=0.070  Sum_probs=52.0

Q ss_pred             ceEEEEccchhHHH-HHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRA-LAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRV  382 (454)
Q Consensus       304 k~vlViGaGG~ara-i~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~  382 (454)
                      .++-+||-||+|.+ +|..|.++|++|+-.++.....-+-.+..|... ....-.+ .+.++|+||-++.+         
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i-~~gh~~~-~i~~~d~vV~SsAI---------   70 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPI-FVPHSAD-NWYDPDLVIKTPAV---------   70 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCE-ESSCCTT-SCCCCSEEEECTTC---------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeE-Eeeeccc-ccCCCCEEEEecCc---------
Confidence            46889999999885 467788999999999998633222223333321 1111111 12334544432211         


Q ss_pred             CCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCcee
Q 012866          383 PVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIV  419 (454)
Q Consensus       383 ~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~  419 (454)
                                         |.+.|.+++|+++|+++.
T Consensus        71 -------------------~~~npel~~A~~~gIpv~   88 (89)
T d1j6ua1          71 -------------------RDDNPEIVRARMERVPIE   88 (89)
T ss_dssp             -------------------CTTCHHHHHHHHTTCCEE
T ss_pred             -------------------CCCCHHHHHHHHcCCCcc
Confidence                               456788899999998864

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=97.21  E-value=0.00071  Score=56.48  Aligned_cols=72  Identities=25%  Similarity=0.325  Sum_probs=53.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC-------cc-ccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA-------AR-PFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~-------~~-~~~~l~~~~~~~~divInat~~  373 (454)
                      .|+.|||+|..|.++++.|...|.  ++.++++++++++..+.++...       .+ ..++.+  ...++|+||.|...
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~--~~~daDvVVitaG~   79 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPE--ICRDADMVVITAGP   79 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGG--GGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHH--HhhCCcEEEEeccc
Confidence            478999999999999999999986  8999999999888766655421       01 112232  24679999998865


Q ss_pred             CCCC
Q 012866          374 GMHP  377 (454)
Q Consensus       374 g~~p  377 (454)
                      .-.|
T Consensus        80 ~~~~   83 (143)
T d1llda1          80 RQKP   83 (143)
T ss_dssp             CCCT
T ss_pred             ccCC
Confidence            4444

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.21  E-value=0.0004  Score=58.28  Aligned_cols=68  Identities=21%  Similarity=0.253  Sum_probs=51.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC--c------cccccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA--A------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~--~------~~~~~l~~~~~~~~divInat~~  373 (454)
                      ||+.|||+|..|.++++.|...|.  ++.+++++.++++..+.++...  .      +...+.+  .++++|+||.|.+.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~--~l~~adiVVitaG~   79 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWA--ALADADVVISTLGN   79 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGG--GGTTCSEEEECCSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHH--HhccccEEEEeccc
Confidence            689999999999999999998885  8999999999988777665421  0      1112222  35779999987653

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.21  E-value=6.8e-05  Score=66.56  Aligned_cols=118  Identities=14%  Similarity=0.189  Sum_probs=82.7

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      +..+.++++.|+|.|.+|+.++..|+..|++|+.++|...+...       ....+.++++ ....+|+|+.++|..  +
T Consensus        40 ~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~-------~~~~~~~l~~-l~~~~D~v~~~~plt--~  109 (199)
T d1dxya1          40 GKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGDH-------PDFDYVSLED-LFKQSDVIDLHVPGI--E  109 (199)
T ss_dssp             CCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSCC-------TTCEECCHHH-HHHHCSEEEECCCCC--G
T ss_pred             cccccceeeeeeecccccccccccccccceeeeccCCccchhhh-------cchhHHHHHH-HHHhcccceeeeccc--c
Confidence            35688999999999999999999999999999999997543210       1112233333 345689999999864  2


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHHH
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                      .+ ...++.+.   ++++.+++.+.-.+. ++.-|-+|-+.|-..--|+|.+-
T Consensus       110 ~T-~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~  161 (199)
T d1dxya1         110 QN-THIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYE  161 (199)
T ss_dssp             GG-TTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCT
T ss_pred             cc-cccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccccC
Confidence            22 23466654   568888888887665 56667777787765555555543

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.20  E-value=0.00031  Score=66.17  Aligned_cols=76  Identities=25%  Similarity=0.354  Sum_probs=54.3

Q ss_pred             CCCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeC---------CHHHHHHHHHHhcCCc----cc---ccccccc--
Q 012866          299 SPLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDI---------DFERAKSLASDVMGAA----RP---FEDILNF--  359 (454)
Q Consensus       299 ~~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nR---------t~~~a~~la~~~~~~~----~~---~~~l~~~--  359 (454)
                      ..++||.+||.|++ |+|++++..|++.|++|++.+|         +.+.+++++++++...    .+   .++.++.  
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~   82 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGVGKGSSAADKVVEEIRRRGGKAVANYDSVEAGEKLVK   82 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSCBCCSHHHHHHHHHHHHTTCEEEEECCCGGGHHHHHH
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhhhhhHHHHHHHHHHHhhcccccccccchHHHHHHHHH
Confidence            45789999999975 9999999999999999999854         5667888887775321    11   1111110  


Q ss_pred             ----CCCCccEEEECCCCC
Q 012866          360 ----QPEKGAILANATPLG  374 (454)
Q Consensus       360 ----~~~~~divInat~~g  374 (454)
                          ...+.|++||.....
T Consensus        83 ~~~~~~G~iDiLVnNAGi~  101 (302)
T d1gz6a_          83 TALDTFGRIDVVVNNAGIL  101 (302)
T ss_dssp             HHHHHTSCCCEEEECCCCC
T ss_pred             HHHHHcCCCCEEEECCccC
Confidence                235689999987543

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00052  Score=58.71  Aligned_cols=71  Identities=24%  Similarity=0.237  Sum_probs=53.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCcc-cc--ccc-------cccCCCCccEEEEC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAAR-PF--EDI-------LNFQPEKGAILANA  370 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~-~~--~~l-------~~~~~~~~divIna  370 (454)
                      .+.+|+|+|+|++|..++..++.+|+ +|++++++++|.+ +++++|.... ..  ++.       .......+|++|+|
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~-~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLS-KAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH-HHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHH-HHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            47799999999999999999999999 8999999988865 6788886431 11  111       00012468999999


Q ss_pred             CCC
Q 012866          371 TPL  373 (454)
Q Consensus       371 t~~  373 (454)
                      ++.
T Consensus       105 ~G~  107 (171)
T d1pl8a2         105 TGA  107 (171)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            964

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.16  E-value=0.00067  Score=56.37  Aligned_cols=72  Identities=24%  Similarity=0.316  Sum_probs=52.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC------c-cccccccccCCCCccEEEECCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA------A-RPFEDILNFQPEKGAILANATPLGM  375 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~------~-~~~~~l~~~~~~~~divInat~~g~  375 (454)
                      |+.|||+|..|.++++.|+..+.  +|.++++++++++..+.++...      . ..-.+.+  ..+++|+||.|.....
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~--~~~~adivvitag~~~   79 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYA--DLKGSDVVIVAAGVPQ   79 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGG--GGTTCSEEEECCCCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHH--HhcCCCEEEEeccccc
Confidence            68899999999999999998875  8999999999888776654321      0 1111222  3578999999887655


Q ss_pred             CCC
Q 012866          376 HPN  378 (454)
Q Consensus       376 ~p~  378 (454)
                      .|.
T Consensus        80 ~~g   82 (140)
T d1a5za1          80 KPG   82 (140)
T ss_dssp             CSS
T ss_pred             CCC
Confidence            544

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.00019  Score=60.30  Aligned_cols=40  Identities=20%  Similarity=0.162  Sum_probs=35.2

Q ss_pred             CCCceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866          301 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAK  340 (454)
Q Consensus       301 ~~~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~  340 (454)
                      ..-+++.||| .|.||++++..|.+.|++|++++|+.....
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~   47 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVA   47 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccccc
Confidence            3457999999 899999999999999999999999876544

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.00042  Score=63.78  Aligned_cols=72  Identities=11%  Similarity=0.204  Sum_probs=49.5

Q ss_pred             CCCceEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCHH---HHHHHHHHhcCCc---ccc----------ccccccCC
Q 012866          301 LAGRMFVLAGA-G--GAGRALAFGAKSRGARVVIFDIDFE---RAKSLASDVMGAA---RPF----------EDILNFQP  361 (454)
Q Consensus       301 ~~~k~vlViGa-G--G~arai~~~L~~~G~~v~i~nRt~~---~a~~la~~~~~~~---~~~----------~~l~~~~~  361 (454)
                      ++||++||.|+ |  |+|+|++.+|++.|++|+++.|+.+   +++++.+..+...   .+.          +++.+ ..
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~   81 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKK-DL   81 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHH-HT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhCCceeEeeecccchhhHHHHHHHHHH-Hc
Confidence            67999999996 4  7999999999999999999999853   4444444433211   111          11111 24


Q ss_pred             CCccEEEECCCC
Q 012866          362 EKGAILANATPL  373 (454)
Q Consensus       362 ~~~divInat~~  373 (454)
                      ...|++||+...
T Consensus        82 g~id~lV~nag~   93 (274)
T d2pd4a1          82 GSLDFIVHSVAF   93 (274)
T ss_dssp             SCEEEEEECCCC
T ss_pred             CCCCeEEeeccc
Confidence            567999987654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00052  Score=59.35  Aligned_cols=71  Identities=25%  Similarity=0.275  Sum_probs=53.2

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc-----c----ccc-cCCCCccEEEE
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE-----D----ILN-FQPEKGAILAN  369 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~-----~----l~~-~~~~~~divIn  369 (454)
                      .|.+|+|+|+|++|..++..++.+|+ +|++++++++|. ++++++|... ++..     +    +.+ .....+|+||+
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~-~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvid  106 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL-KLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILE  106 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH-HHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEE
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccc-cccccccceEEEeccccchHHHHHHHHHhhCCCCceEEee
Confidence            58899999999999999999999999 899999999886 4678887532 2111     1    111 01245899999


Q ss_pred             CCCC
Q 012866          370 ATPL  373 (454)
Q Consensus       370 at~~  373 (454)
                      |++.
T Consensus       107 ~vG~  110 (182)
T d1vj0a2         107 ATGD  110 (182)
T ss_dssp             CSSC
T ss_pred             cCCc
Confidence            9853

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00013  Score=63.93  Aligned_cols=117  Identities=19%  Similarity=0.276  Sum_probs=79.7

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ...+.++++.|+|.|.+|+.++..|...|++|+.++|+.....       .....++++++ .+..+|+|+.+.|..  +
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-------~~~~~~~~l~e-ll~~sDii~i~~plt--~  108 (188)
T d1sc6a1          39 SFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL-------GNATQVQHLSD-LLNMSDVVSLHVPEN--P  108 (188)
T ss_dssp             CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC-------TTCEECSCHHH-HHHHCSEEEECCCSS--T
T ss_pred             cccccceEEEEeecccchhhhhhhcccccceEeeccccccchh-------hhhhhhhhHHH-HHhhccceeecccCC--c
Confidence            3568899999999999999999999999999999998754311       11122334444 345689999988874  2


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHHH
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      . ....++.+.   ++++.+++.+.-.+. ++.-|.+|-+.|-..--++|.+
T Consensus       109 ~-T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV~  159 (188)
T d1sc6a1         109 S-TKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF  159 (188)
T ss_dssp             T-TTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC-
T ss_pred             c-hhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEecC
Confidence            2 223467654   467888888887766 5555666666665544444443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.12  E-value=0.0014  Score=56.26  Aligned_cols=130  Identities=15%  Similarity=0.208  Sum_probs=78.8

Q ss_pred             CCCCCCceEEEEccch-hHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc---cc-----ccccccCCCCccEEE
Q 012866          298 GSPLAGRMFVLAGAGG-AGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR---PF-----EDILNFQPEKGAILA  368 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG-~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~---~~-----~~l~~~~~~~~divI  368 (454)
                      +.+++||+++|||-+. .|+.++.-|.++|+.|++++.+...-............   .+     +.+++ ....+|++|
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~-~~~~aDIvI  102 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKK-CSLDSDVVI  102 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHH-HHHHCSEEE
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhh-ccccCCEEE
Confidence            3579999999999875 59999999999999999988652110000000000000   00     11222 233689999


Q ss_pred             ECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHH-CCCc--eecc--HHHHHHHHHHHHHHhc
Q 012866          369 NATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEA-AGAI--IVSG--VEMFLRQAIGQFNLFT  437 (454)
Q Consensus       369 nat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~-~G~~--~~~G--l~mlv~Qa~~~f~lw~  437 (454)
                      .+++.   |+   ..+..++++++.+++|+..+...-   ..+++ .++.  +-.|  .-||+...+.+++.|-
T Consensus       103 savG~---p~---~~i~~d~ik~GavvIDvGi~~~~~---~~v~~~a~~iTPVPGGVTvamLl~N~v~a~~~~~  167 (171)
T d1edza1         103 TGVPS---EN---YKFPTEYIKEGAVCINFACTKNFS---DDVKEKASLYVPMTGKVTIAMLLRNMLRLVRNVE  167 (171)
T ss_dssp             ECCCC---TT---CCBCTTTSCTTEEEEECSSSCCBC---GGGGTTEEEEESCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EccCC---Cc---cccChhhcccCceEeecccccccc---cchhheeeEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            88864   21   136778999999999997654322   12222 2221  2223  4688888888777764

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=97.11  E-value=0.00072  Score=58.32  Aligned_cols=72  Identities=22%  Similarity=0.284  Sum_probs=55.4

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccccccc-------c-cCCCCccEEEEC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFEDIL-------N-FQPEKGAILANA  370 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~-------~-~~~~~~divIna  370 (454)
                      -.|.+|+|+|+||.|..++..++..|+ +|++++++.+|.+ +|++++... +...+-.       + .....+|++|++
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~-~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFE-KAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH-HHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHH-HHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            357899999999999999999999998 9999999999855 889998753 2222111       0 023568999999


Q ss_pred             CCC
Q 012866          371 TPL  373 (454)
Q Consensus       371 t~~  373 (454)
                      ++.
T Consensus       107 ~g~  109 (176)
T d1d1ta2         107 IGH  109 (176)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.10  E-value=0.00058  Score=58.82  Aligned_cols=71  Identities=20%  Similarity=0.145  Sum_probs=53.5

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccccc------cccc-CCCCccEEEECCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFED------ILNF-QPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~~------l~~~-~~~~~divInat~  372 (454)
                      .|.+|+|+|+|++|..++..++.+|+ +|++++++.+| .++++++|... +...+      +.+. .-..+|++|+|++
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r-~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g  105 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPIC-VEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGG  105 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHH-HHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSS
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhh-HHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccC
Confidence            47899999999999999999999999 89999999888 55678888532 22221      1110 1245899999997


Q ss_pred             C
Q 012866          373 L  373 (454)
Q Consensus       373 ~  373 (454)
                      .
T Consensus       106 ~  106 (174)
T d1jqba2         106 G  106 (174)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.06  E-value=0.00019  Score=62.32  Aligned_cols=68  Identities=21%  Similarity=0.254  Sum_probs=47.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH--HHHHHHHHhcCCc----------cccccccccCCCCccEEEECCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE--RAKSLASDVMGAA----------RPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~--~a~~la~~~~~~~----------~~~~~l~~~~~~~~divInat~  372 (454)
                      +|.|||+|.+|.+++..|++.|.+|++|+|..+  ..+.+.+......          ...+++.+ .+.++|+||.|+|
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~ad~Ii~avp   80 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEK-CLENAEVVLLGVS   80 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHH-HHTTCSEEEECSC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHH-HHhccchhhcccc
Confidence            588999999999999999999999999999544  3444433211000          01123333 3567899999998


Q ss_pred             C
Q 012866          373 L  373 (454)
Q Consensus       373 ~  373 (454)
                      .
T Consensus        81 s   81 (180)
T d1txga2          81 T   81 (180)
T ss_dssp             G
T ss_pred             h
Confidence            5

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.05  E-value=0.00044  Score=57.69  Aligned_cols=73  Identities=21%  Similarity=0.212  Sum_probs=48.8

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCc-------cccccccccCCCCccEEEECCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAA-------RPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~-------~~~~~l~~~~~~~~divInat~~g  374 (454)
                      +|+.|||+|..|.++++.|...|.  +|.+++++.++++..+.++....       ....+.+  ...++|+||.|....
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~--~~~~adivvitag~~   79 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYS--DVKDCDVIVVTAGAN   79 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGG--GGTTCSEEEECCCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHH--HhCCCceEEEecccc
Confidence            478999999999999999999886  89999999998887777765311       0111122  357799999987665


Q ss_pred             CCCC
Q 012866          375 MHPN  378 (454)
Q Consensus       375 ~~p~  378 (454)
                      ..|.
T Consensus        80 ~~~~   83 (142)
T d1y6ja1          80 RKPG   83 (142)
T ss_dssp             ----
T ss_pred             cCcC
Confidence            5443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.04  E-value=0.00036  Score=58.65  Aligned_cols=64  Identities=20%  Similarity=0.107  Sum_probs=47.2

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH-HHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL-ASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l-a~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      |+.|||.|.||++++..|.+.|++|++++|+.++...+ ++..+. ..+.++    ....+|+||-|+|.
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~-~~~~~e----~~~~~diIi~~v~~   66 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGV-TETSEE----DVYSCPVVISAVTP   66 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTC-EECCHH----HHHTSSEEEECSCG
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccc-cccHHH----HHhhcCeEEEEecC
Confidence            58899999999999999999999999999887665444 333322 112222    23568999999874

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.04  E-value=0.00096  Score=57.45  Aligned_cols=72  Identities=18%  Similarity=0.190  Sum_probs=55.1

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccccc---c-c----ccCCCCccEEEEC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFED---I-L----NFQPEKGAILANA  370 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~~---l-~----~~~~~~~divIna  370 (454)
                      -.|.+|+|+|+|+.|..++..++..|+ .|++.+++++| .+++++++... +....   . .    ......+|++|+|
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r-~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEK-FPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGG-HHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHH-HHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            357899999999999999999999999 89999999888 57889998643 22211   1 0    1123568999999


Q ss_pred             CCC
Q 012866          371 TPL  373 (454)
Q Consensus       371 t~~  373 (454)
                      +..
T Consensus       106 ~G~  108 (174)
T d1e3ia2         106 AGT  108 (174)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            964

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.03  E-value=0.0007  Score=59.12  Aligned_cols=120  Identities=10%  Similarity=0.010  Sum_probs=80.8

Q ss_pred             CCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCC
Q 012866          298 GSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHP  377 (454)
Q Consensus       298 ~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p  377 (454)
                      ...+.++++.|+|.|.+|++++..|...|++|..++|...... .....+.  ....++.+ .++++|+|+.+.|..-  
T Consensus        39 ~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~-~~~~~~~--~~~~~l~~-~l~~sD~v~~~~plt~--  112 (188)
T d2naca1          39 AYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPES-VEKELNL--TWHATRED-MYPVCDVVTLNCPLHP--  112 (188)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHH-HHHHHTC--EECSSHHH-HGGGCSEEEECSCCCT--
T ss_pred             ceeccccceeeccccccchhhhhhhhccCceEEEEeecccccc-ccccccc--cccCCHHH-HHHhccchhhcccccc--
Confidence            3568899999999999999999999999999999998643221 1122221  12233333 3467899999998742  


Q ss_pred             CCCCCCCChhc---ccCCcEEEEEecCCC-CCHHHHHHHHCCCceeccHHH
Q 012866          378 NTDRVPVSEET---LRDYQLVFDAVYTPR-KTRLLKDAEAAGAIIVSGVEM  424 (454)
Q Consensus       378 ~~~~~~i~~~~---l~~~~~v~D~~y~P~-~T~ll~~A~~~G~~~~~Gl~m  424 (454)
                      . ....+..+.   ++++.+++.+.-.+. +..-|.+|-+.|...--++|.
T Consensus       113 ~-T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~lDV  162 (188)
T d2naca1         113 E-TEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDV  162 (188)
T ss_dssp             T-TTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESC
T ss_pred             c-chhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEEeC
Confidence            2 223466654   567788888876554 566666777777655455553

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.02  E-value=0.00011  Score=62.69  Aligned_cols=117  Identities=11%  Similarity=0.028  Sum_probs=76.4

Q ss_pred             eEEEEccchhHHH-HHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRA-LAFGAKSR-GAR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       305 ~vlViGaGG~ara-i~~~L~~~-G~~-v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      ++.|||+|.+|+- .+..+... +++ +.|++|+.++++++++.++....  +++++ ..++.|+|+.|||..+..    
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~--~~~~~-l~~~~D~V~I~tp~~~h~----   75 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYA--DSLSS-LAASCDAVFVHSSTASHF----   75 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBC--SSHHH-HHTTCSEEEECSCTTHHH----
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhccccccc--ccchh-hhhhcccccccccchhcc----
Confidence            6899999999965 56667665 555 67999999999999999976542  22222 234689999999865432    


Q ss_pred             CCCChhcccCC-cEEEE--EecCCCC-CHHHHHHHHCCCceeccHHHHHHHH
Q 012866          382 VPVSEETLRDY-QLVFD--AVYTPRK-TRLLKDAEAAGAIIVSGVEMFLRQA  429 (454)
Q Consensus       382 ~~i~~~~l~~~-~~v~D--~~y~P~~-T~ll~~A~~~G~~~~~Gl~mlv~Qa  429 (454)
                       .+....+..+ .+++|  +..++.+ ..+++.|++.|..+.-|.....+++
T Consensus        76 -~~~~~al~~gk~V~~EKPla~~~~e~~~l~~~a~~~~~~~~v~~~~r~~~~  126 (164)
T d1tlta1          76 -DVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLTLMVGFNRRFFVG  126 (164)
T ss_dssp             -HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGHHH
T ss_pred             -ccccccccccceeeccccccCCHHHHHHHHHHHHHcCCcEEEEeccccCHH
Confidence             1223345444 44444  3333332 5677888889988777765444443

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.02  E-value=0.001  Score=55.34  Aligned_cols=72  Identities=21%  Similarity=0.184  Sum_probs=52.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC------C-c-c-ccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMG------A-A-R-PFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~------~-~-~-~~~~l~~~~~~~~divInat~~  373 (454)
                      |+.|||+|..|.++++.|+..|.  ++.+++++.++++..+.++..      . . + .-.+.+  .+.++|+||.|...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~--~~~~adiVvitag~   79 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYS--LLKGSEIIVVTAGL   79 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGG--GGTTCSEEEECCCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHH--HhccccEEEEeccc
Confidence            68899999999999999998875  899999999988776655531      1 1 1 112232  35779999998876


Q ss_pred             CCCCC
Q 012866          374 GMHPN  378 (454)
Q Consensus       374 g~~p~  378 (454)
                      ...|.
T Consensus        80 ~~~~g   84 (142)
T d1ojua1          80 ARKPG   84 (142)
T ss_dssp             CCCSS
T ss_pred             cCCCC
Confidence            55554

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.00  E-value=0.0012  Score=56.18  Aligned_cols=71  Identities=20%  Similarity=0.185  Sum_probs=52.7

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc----c-------ccccCCCCccEEEE
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE----D-------ILNFQPEKGAILAN  369 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~----~-------l~~~~~~~~divIn  369 (454)
                      .+.+|+|+|+|++|..++..++..|++|+++.++++|. +++++++... ...+    +       +.+.....+|++|+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~-~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL-EVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHH-HHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            47899999999999999999999999999999999985 5667776532 1111    1       11112346899999


Q ss_pred             CCCC
Q 012866          370 ATPL  373 (454)
Q Consensus       370 at~~  373 (454)
                      |++.
T Consensus       105 ~~g~  108 (170)
T d1e3ja2         105 CSGN  108 (170)
T ss_dssp             CSCC
T ss_pred             cCCC
Confidence            9863

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.00  E-value=0.00043  Score=59.64  Aligned_cols=110  Identities=18%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcc--c------cccccccCCCCccEEEECCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAAR--P------FEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~--~------~~~l~~~~~~~~divInat~~g~~  376 (454)
                      ++-|||.|-||.+++..|.+.|++|++|||++++++++.+.......  .      .+++.. .+...+.++...+.+..
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAA-SLKKPRKALILVQAGAA   81 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHH-HBCSSCEEEECCCCSHH
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHH-hcccceEEEEeecCcch
Confidence            58899999999999999999999999999999999999888653211  1      111111 12334444444432110


Q ss_pred             CCCCCCCCC--hhcccCCcEEEEEecCCCC--CHHHHHHHHCCCce
Q 012866          377 PNTDRVPVS--EETLRDYQLVFDAVYTPRK--TRLLKDAEAAGAII  418 (454)
Q Consensus       377 p~~~~~~i~--~~~l~~~~~v~D~~y~P~~--T~ll~~A~~~G~~~  418 (454)
                      -  . ..+.  ...+.++.+++|..-...+  ..+.++.+++|+.+
T Consensus        82 ~--~-~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~  124 (178)
T d1pgja2          82 T--D-STIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRF  124 (178)
T ss_dssp             H--H-HHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEE
T ss_pred             h--h-hhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeE
Confidence            0  0 0000  1235677888888765332  34455556677754

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.98  E-value=0.00085  Score=57.10  Aligned_cols=107  Identities=15%  Similarity=0.108  Sum_probs=72.1

Q ss_pred             eEEEEccchhHHH-HHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc--cccccccccCCCCccEEEECCCCCCCCCCC
Q 012866          305 MFVLAGAGGAGRA-LAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA--RPFEDILNFQPEKGAILANATPLGMHPNTD  380 (454)
Q Consensus       305 ~vlViGaGG~ara-i~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~--~~~~~l~~~~~~~~divInat~~g~~p~~~  380 (454)
                      ++.|||+|++|+. .+..|...+. ++.++++++++++++++.++...  .+++++-+   .+.|+|+.|||..+..   
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~---~~iD~V~I~tp~~~H~---   76 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQ---YGVDAVMIHAATDVHS---   76 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGG---GCCSEEEECSCGGGHH---
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcc---cccceecccccccccc---
Confidence            6899999999965 5667776655 88999999999999999987642  34444322   3579999999865432   


Q ss_pred             CCCCChhcccCC-cEEEEEecCCCC------CHHHHHHHHCCCceeccH
Q 012866          381 RVPVSEETLRDY-QLVFDAVYTPRK------TRLLKDAEAAGAIIVSGV  422 (454)
Q Consensus       381 ~~~i~~~~l~~~-~~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl  422 (454)
                        .+-...+..+ .++++   +|.-      -.+.+.+++.|..+.-|.
T Consensus        77 --~~~~~al~~gk~V~~E---KP~~~~~~e~~~l~~~a~~~~~~~~vg~  120 (167)
T d1xeaa1          77 --TLAAFFLHLGIPTFVD---KPLAASAQECENLYELAEKHHQPLYVGF  120 (167)
T ss_dssp             --HHHHHHHHTTCCEEEE---SCSCSSHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             --cccccccccccccccC---CCCcCCHHHHHHHHHHHHHcCCEEEEEe
Confidence              1223344443 34443   3442      456677788888765553

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.00083  Score=57.22  Aligned_cols=71  Identities=18%  Similarity=0.172  Sum_probs=53.3

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc--ccccCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED--ILNFQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~--l~~~~~~~~divInat~~  373 (454)
                      .|.+|+|+|+|++|..++..++.+|++++++.++.++. +++++++... ++..+  ........+|.+|++++.
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~-~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~  103 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR-EAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAA  103 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH-HHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSS
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH-HHHhccCCcEEEECchhhHHHHhcCCCceeeeeeec
Confidence            57899999999999999998999999877899988874 5778888643 22211  111134578999999864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.96  E-value=0.00048  Score=63.62  Aligned_cols=49  Identities=27%  Similarity=0.529  Sum_probs=41.6

Q ss_pred             CCCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh
Q 012866          298 GSPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV  346 (454)
Q Consensus       298 ~~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-~~~a~~la~~~  346 (454)
                      ...++||.+||.|+ +|+|++++..|++.|++|++..|+ .+.++++++++
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~   63 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTESAEEVVAAI   63 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHH
Confidence            35699999999995 699999999999999999998765 66777777655

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.95  E-value=0.00057  Score=58.72  Aligned_cols=72  Identities=25%  Similarity=0.234  Sum_probs=52.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCC-ccccc--c----ccccCCCCccEEEECCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGA-ARPFE--D----ILNFQPEKGAILANATP  372 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~-~~~~~--~----l~~~~~~~~divInat~  372 (454)
                      -.|.+|+|+|+|++|.+++..++..|+ .|++++++++|.+ ++++++.. .++..  +    +.+.....+|++|+|++
T Consensus        27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~-~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G  105 (174)
T d1f8fa2          27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLE-LAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG  105 (174)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHH-HHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred             CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHH-HHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence            357899999999999999999999999 7888899887754 56778753 22211  1    11211246899999987


Q ss_pred             C
Q 012866          373 L  373 (454)
Q Consensus       373 ~  373 (454)
                      .
T Consensus       106 ~  106 (174)
T d1f8fa2         106 S  106 (174)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0017  Score=56.12  Aligned_cols=36  Identities=36%  Similarity=0.591  Sum_probs=33.5

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      ..+|+|+|||+|.+|.++|..|+++|.+|+|+.++.
T Consensus        41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            457999999999999999999999999999999974

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=96.92  E-value=0.00052  Score=62.98  Aligned_cols=74  Identities=19%  Similarity=0.306  Sum_probs=51.7

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC-HHHHHHHHHHh----cCCc----ccccc---cccc------CC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID-FERAKSLASDV----MGAA----RPFED---ILNF------QP  361 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt-~~~a~~la~~~----~~~~----~~~~~---l~~~------~~  361 (454)
                      ++||.+||.|+ +|+|++++..|++.|++|++..|+ .++++++.+++    +...    .++.+   ++++      ..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~   81 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAEIEKVRAGLAAQHGVKVLYDGADLSKGEAVRGLVDNAVRQM   81 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHHHHHTSCEEEECCCTTSHHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHh
Confidence            57899999996 599999999999999999999996 56676665544    3322    12221   1110      12


Q ss_pred             CCccEEEECCCCC
Q 012866          362 EKGAILANATPLG  374 (454)
Q Consensus       362 ~~~divInat~~g  374 (454)
                      ...|++||+....
T Consensus        82 G~iDiLVnnAG~~   94 (260)
T d1x1ta1          82 GRIDILVNNAGIQ   94 (260)
T ss_dssp             SCCSEEEECCCCC
T ss_pred             CCCcEEEeecccc
Confidence            4679999987543

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=96.90  E-value=0.00042  Score=63.43  Aligned_cols=49  Identities=20%  Similarity=0.315  Sum_probs=41.7

Q ss_pred             CCCceEEEEcc-c--hhHHHHHHHHHHCCCeEEEEeCCHHHH-HHHHHHhcCC
Q 012866          301 LAGRMFVLAGA-G--GAGRALAFGAKSRGARVVIFDIDFERA-KSLASDVMGA  349 (454)
Q Consensus       301 ~~~k~vlViGa-G--G~arai~~~L~~~G~~v~i~nRt~~~a-~~la~~~~~~  349 (454)
                      ++||++||.|+ |  |+|++++..|++.|++|.+.+|+.++. ++++++++..
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~~~~~~~~~   56 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQRITDRLPAK   56 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHcCCc
Confidence            68999999995 4  699999999999999999999998775 6677776643

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.90  E-value=0.0014  Score=54.45  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=51.0

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC------c--cccccccccCCCCccEEEECCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA------A--RPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~------~--~~~~~l~~~~~~~~divInat~~g  374 (454)
                      |+.|||+|..|.++++.|+..|.  +|.++++++++++..+..+...      .  +...+..+ ...++|++|.|....
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~-~~~dadvvvitag~~   80 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYA-DTANSDIVIITAGLP   80 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGG-GGTTCSEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHH-HhcCCeEEEEEEecC
Confidence            58899999999999999999885  8999999998877665444221      1  11111122 357899999987654


Q ss_pred             CCC
Q 012866          375 MHP  377 (454)
Q Consensus       375 ~~p  377 (454)
                      ..|
T Consensus        81 ~~~   83 (142)
T d1guza1          81 RKP   83 (142)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            333

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.88  E-value=0.0014  Score=56.23  Aligned_cols=72  Identities=17%  Similarity=0.177  Sum_probs=54.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccccc----cc----cCCCCccEEEEC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFEDI----LN----FQPEKGAILANA  370 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~~l----~~----~~~~~~divIna  370 (454)
                      -.|.+|+|+|+||.|..++..++..|+ +|++++++.+|. +++++++... ++..+.    .+    .....+|++|.+
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl-~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF-PKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH-HHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH-HHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            357899999999999999999999998 899999998885 5678888653 222111    10    012468999998


Q ss_pred             CCC
Q 012866          371 TPL  373 (454)
Q Consensus       371 t~~  373 (454)
                      +..
T Consensus       105 ~g~  107 (174)
T d1p0fa2         105 AGR  107 (174)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.87  E-value=0.00061  Score=59.43  Aligned_cols=39  Identities=23%  Similarity=0.382  Sum_probs=35.0

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      ++|.|||+|-||+.++..++..|++|++++++++..++.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~   43 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQG   43 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhh
Confidence            679999999999999999999999999999998765543

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.86  E-value=0.0007  Score=62.01  Aligned_cols=47  Identities=34%  Similarity=0.571  Sum_probs=39.9

Q ss_pred             CCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHh
Q 012866          300 PLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDV  346 (454)
Q Consensus       300 ~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~  346 (454)
                      +|.||.|||.|+ +|.|++++..|++.|++|++. .|+.+.++++++++
T Consensus         3 ~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~   51 (259)
T d1ja9a_           3 PLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAEL   51 (259)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHH
Confidence            589999999996 599999999999999998885 66777677776665

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.86  E-value=0.001  Score=55.29  Aligned_cols=73  Identities=16%  Similarity=0.207  Sum_probs=52.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc--------cc-cccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA--------RP-FEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~--------~~-~~~l~~~~~~~~divInat~~  373 (454)
                      +|+.|||+|..|.++++.|+..+. ++.+++.+.++++..+.++....        +. -.+.+  ...++|+||.|...
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~--~~~~advvvitag~   79 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYA--DTANSDVIVVTSGA   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGG--GGTTCSEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHH--HhcCCCEEEEeeec
Confidence            589999999999999999998888 99999999988887776664211        11 12233  24678999988865


Q ss_pred             CCCCC
Q 012866          374 GMHPN  378 (454)
Q Consensus       374 g~~p~  378 (454)
                      ...|.
T Consensus        80 ~~~~~   84 (142)
T d1uxja1          80 PRKPG   84 (142)
T ss_dssp             C----
T ss_pred             cCCcC
Confidence            44443

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.86  E-value=0.00063  Score=62.26  Aligned_cols=48  Identities=27%  Similarity=0.305  Sum_probs=42.7

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHHHhc
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKS---RGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~---~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      .++||.++|.|++ |+|++++..|++   .|++|++++|+.++++++++++.
T Consensus         3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~l~   54 (259)
T d1oaaa_           3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKEELG   54 (259)
T ss_dssp             CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHHHH
Confidence            4789999999975 999999999986   68899999999999999988763

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.82  E-value=0.00014  Score=64.18  Aligned_cols=69  Identities=16%  Similarity=0.067  Sum_probs=48.9

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc--cccc---cccccCCCCccEEEECCCC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA--RPFE---DILNFQPEKGAILANATPL  373 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~--~~~~---~l~~~~~~~~divInat~~  373 (454)
                      .|||+|+|| |..|++++..|.+.|.+|+++.|++++....... +.+.  .++.   ++.+ .+.++|+||++.+.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~-~~~~~~gD~~d~~~l~~-al~~~d~vi~~~g~   77 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPR-PAHVVVGDVLQAADVDK-TVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCC-CSEEEESCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhccccccc-ccccccccccchhhHHH-HhcCCCEEEEEecc
Confidence            478999995 8999999999999999999999998885432110 1111  1222   2333 35678999998764

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.81  E-value=0.0008  Score=61.04  Aligned_cols=70  Identities=19%  Similarity=0.325  Sum_probs=50.6

Q ss_pred             eEEEEccc-hhHHHHHHHHHHCCCe-------EEEEeCCHHHHHHHHHHhcCC---c----ccccc---cccc------C
Q 012866          305 MFVLAGAG-GAGRALAFGAKSRGAR-------VVIFDIDFERAKSLASDVMGA---A----RPFED---ILNF------Q  360 (454)
Q Consensus       305 ~vlViGaG-G~arai~~~L~~~G~~-------v~i~nRt~~~a~~la~~~~~~---~----~~~~~---l~~~------~  360 (454)
                      -|||.|++ |+|++++..|++.|++       |.+++|+.++++++++++...   .    +++.+   +.++      .
T Consensus         3 VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (240)
T d2bd0a1           3 ILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLECRAEGALTDTITADISDMADVRRLTTHIVER   82 (240)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHHHHTTTCEEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHH
Confidence            36788974 9999999999999986       999999999999998877431   1    12221   1110      2


Q ss_pred             CCCccEEEECCCCC
Q 012866          361 PEKGAILANATPLG  374 (454)
Q Consensus       361 ~~~~divInat~~g  374 (454)
                      ....|++||+....
T Consensus        83 ~g~iDilvnnAg~~   96 (240)
T d2bd0a1          83 YGHIDCLVNNAGVG   96 (240)
T ss_dssp             TSCCSEEEECCCCC
T ss_pred             cCCcceeecccccc
Confidence            35689999987543

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=96.77  E-value=0.0021  Score=54.91  Aligned_cols=72  Identities=21%  Similarity=0.270  Sum_probs=53.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc---c-cc----ccCCCCccEEEEC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE---D-IL----NFQPEKGAILANA  370 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~---~-l~----~~~~~~~divIna  370 (454)
                      -.|.+|+|+|+||.+..++..++..|+ +|.+++++.+|.+ ++.+++... +...   + +.    ......+|++|++
T Consensus        27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~-~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFA-KAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHH-HHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHH-HHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            357899999999999999999999998 9999999999955 667776542 2221   1 11    1123578999999


Q ss_pred             CCC
Q 012866          371 TPL  373 (454)
Q Consensus       371 t~~  373 (454)
                      ++.
T Consensus       106 ~G~  108 (176)
T d2jhfa2         106 IGR  108 (176)
T ss_dssp             SCC
T ss_pred             CCc
Confidence            875

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.69  E-value=0.0025  Score=54.24  Aligned_cols=70  Identities=23%  Similarity=0.322  Sum_probs=52.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccccc----c----cccCCCCccEEEECC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFED----I----LNFQPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~~----l----~~~~~~~~divInat  371 (454)
                      .|.+|+|.|+||.|..++..++.+|+ .|++++++++| .++++++|... +...+    .    .......+|++|+++
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k-~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~  106 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDK-FARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  106 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGG-HHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHH-HHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecC
Confidence            57899999999999999999999998 78888888888 46788888643 22211    1    111235689999988


Q ss_pred             C
Q 012866          372 P  372 (454)
Q Consensus       372 ~  372 (454)
                      .
T Consensus       107 G  107 (176)
T d2fzwa2         107 G  107 (176)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.64  E-value=0.0013  Score=59.82  Aligned_cols=40  Identities=25%  Similarity=0.236  Sum_probs=35.6

Q ss_pred             CCCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          299 SPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       299 ~~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      .+++||++||.||+   |+|++++..|++.|++|.+..|+.+.
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~   46 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERL   46 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHH
Confidence            46899999999974   79999999999999999999998654

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.62  E-value=0.003  Score=52.58  Aligned_cols=72  Identities=14%  Similarity=0.222  Sum_probs=49.8

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCH--HHHHHHHHHhcC----Cc--cc--c---ccccccCCCCccEEE
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDF--ERAKSLASDVMG----AA--RP--F---EDILNFQPEKGAILA  368 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~--~~a~~la~~~~~----~~--~~--~---~~l~~~~~~~~divI  368 (454)
                      |+.|+|| |..|.++++.|+..|.  ++.+++++.  ++++.++.++..    ..  .+  +   ++.+  .+.++|+||
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~--~l~~aDvVV   79 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLR--IIDESDVVI   79 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGG--GGTTCSEEE
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHH--HhccceEEE
Confidence            5899996 9999999999999995  899999876  456666555432    10  11  1   1222  356899999


Q ss_pred             ECCCCCCCCC
Q 012866          369 NATPLGMHPN  378 (454)
Q Consensus       369 nat~~g~~p~  378 (454)
                      .|......|.
T Consensus        80 itAG~~~~~g   89 (145)
T d1hyea1          80 ITSGVPRKEG   89 (145)
T ss_dssp             ECCSCCCCTT
T ss_pred             EecccccCCC
Confidence            9876544443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.61  E-value=0.0013  Score=58.73  Aligned_cols=114  Identities=15%  Similarity=0.210  Sum_probs=70.9

Q ss_pred             ceEEEEccchhHHH-HHHHHHHC-CCeE-EEEeCCHHHHHHHHHHhcCCc---ccccccccc-CCCCccEEEECCCCCCC
Q 012866          304 RMFVLAGAGGAGRA-LAFGAKSR-GARV-VIFDIDFERAKSLASDVMGAA---RPFEDILNF-QPEKGAILANATPLGMH  376 (454)
Q Consensus       304 k~vlViGaGG~ara-i~~~L~~~-G~~v-~i~nRt~~~a~~la~~~~~~~---~~~~~l~~~-~~~~~divInat~~g~~  376 (454)
                      -++.|||+|.+|+. .+..+... +++| .|++|+++++++++++++...   ..+.+++++ .-.+.|+|+.|||....
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H  113 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  113 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhh
Confidence            48999999999975 55555554 4564 599999999999999987542   122333331 12468999999986543


Q ss_pred             CCCCCCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHHHH
Q 012866          377 PNTDRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVEMF  425 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~ml  425 (454)
                      .     .+....+..+. ++++   +|..      -.+++.|++.|..+.-|..+.
T Consensus       114 ~-----~~~~~al~~gk~v~~E---KPla~~~~e~~~l~~~a~~~~~~~~v~~~~r  161 (221)
T d1h6da1         114 A-----EFAIRAFKAGKHVMCE---KPMATSVADCQRMIDAAKAANKKLMIGYRCH  161 (221)
T ss_dssp             H-----HHHHHHHHTTCEEEEC---SSCCSSHHHHHHHHHHHHHHTCCEEECCGGG
T ss_pred             h-----hHHHHhhhcchhhhcC---CCccCCHHHHHHHHHHHHhcCCcEEEeeccc
Confidence            2     12233444443 3332   3332      345666777777776565543

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=96.61  E-value=0.066  Score=47.96  Aligned_cols=131  Identities=17%  Similarity=0.176  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEe-CC----------HHHHH--
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD-ID----------FERAK--  340 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~n-Rt----------~~~a~--  340 (454)
                      +.|...+++..+...         +.+++|++|+|-|.|.+|+.++..|.+.|++|+.++ .+          .+...  
T Consensus        11 g~Gv~~~~~~~~~~~---------~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~   81 (242)
T d1v9la1          11 GFGVAVATREMAKKL---------WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKN   81 (242)
T ss_dssp             HHHHHHHHHHHHHHH---------HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHT
T ss_pred             hHHHHHHHHHHHHHc---------CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHH
Confidence            567777776655422         246899999999999999999999999999765433 21          12111  


Q ss_pred             ---------HHHHHh-cCCccc-cccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHH
Q 012866          341 ---------SLASDV-MGAARP-FEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLK  409 (454)
Q Consensus       341 ---------~la~~~-~~~~~~-~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~  409 (454)
                               +....+ +..... -+++   ...++||++-|.--+....   ...  ..+ ..++++.-.-+|....--+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i---~~~~~DIliPcA~~~~I~~---~~a--~~i-~ak~IvegAN~p~t~~a~~  152 (242)
T d1v9la1          82 KGLTGPALVELFTTKDNAEFVKNPDAI---FKLDVDIFVPAAIENVIRG---DNA--GLV-KARLVVEGANGPTTPEAER  152 (242)
T ss_dssp             TTSCHHHHHHHHHHTSCCCCCSSTTGG---GGCCCSEEEECSCSSCBCT---TTT--TTC-CCSEEECCSSSCBCHHHHH
T ss_pred             hhcchhhHHHhhhhccCceEeeCcchh---ccccccEEeecchhccccH---HHH--Hhc-ccCEEEecCCCCCChhHHH
Confidence                     111111 111111 1222   2246899998875443211   111  122 3468888888886333334


Q ss_pred             HHHHCCCceeccH
Q 012866          410 DAEAAGAIIVSGV  422 (454)
Q Consensus       410 ~A~~~G~~~~~Gl  422 (454)
                      .-+++|+.+++..
T Consensus       153 ~L~~rgI~~~PD~  165 (242)
T d1v9la1         153 ILYERGVVVVPDI  165 (242)
T ss_dssp             HHHTTTCEEECHH
T ss_pred             HHHhCCeEEeCch
Confidence            4456888877654

>d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative carbonyl reductase sniffer
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.59  E-value=0.0009  Score=60.84  Aligned_cols=46  Identities=24%  Similarity=0.213  Sum_probs=40.0

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMG  348 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~  348 (454)
                      .|+|||.|+ +|+|++++..|++.|+  +|++..|+.++++++.+..+.
T Consensus         3 ~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~~~   51 (250)
T d1yo6a1           3 PGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKATELKSIKDS   51 (250)
T ss_dssp             CSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCCCT
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhhCC
Confidence            488999997 4999999999999996  688899999999998776544

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=96.54  E-value=0.00099  Score=60.93  Aligned_cols=44  Identities=18%  Similarity=0.183  Sum_probs=36.9

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      +++||.|+|.|++ |+|++++..|++.|++|+++.|+.++.++++
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~   46 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA   46 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH
Confidence            4789999999975 9999999999999999888888766555543

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.47  E-value=0.0039  Score=54.48  Aligned_cols=70  Identities=24%  Similarity=0.181  Sum_probs=51.9

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccc-c--cc----cccc-CCCCccEEEECCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARP-F--ED----ILNF-QPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~-~--~~----l~~~-~~~~~divInat~  372 (454)
                      .|.+|+|+|+|+.|..++..++..|+ +|++++++++|. +++++++...+. .  ++    +.+. ....+|++|+++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl-~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARL-AHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH-HHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhh-HhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            57899999999999998888888999 899999998885 567888764321 1  11    1110 2346899999885

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.45  E-value=0.0028  Score=54.02  Aligned_cols=71  Identities=18%  Similarity=0.176  Sum_probs=51.3

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc-c-c----cccCCCCccEEEECCCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE-D-I----LNFQPEKGAILANATPL  373 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~-~-l----~~~~~~~~divInat~~  373 (454)
                      .+.+|+|+|+|++|..++..++.+|+ .|++++++++|.+ ++++++... ++.. + .    +......+|++|++++.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~-~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~  110 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLK-LAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS  110 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHH-HHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHH-HHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCc
Confidence            47899999999999999998888998 8899999988754 566676532 2211 1 1    11123468999999964

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.43  E-value=0.0036  Score=52.03  Aligned_cols=71  Identities=18%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCC--c------cccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGA--A------RPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~--~------~~~~~l~~~~~~~~divInat~~  373 (454)
                      |+.|+|| |..|.++++.|...|.  ++.+++.+..+++.+  ++...  .      +...+..+ ..+++|+||.|...
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~--Dl~~~~~~~~~~~~~~~~~~~~-~~~~aDivVitag~   78 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAA--DLSHIETRATVKGYLGPEQLPD-CLKGCDVVVIPAGV   78 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHH--HHTTSSSSCEEEEEESGGGHHH-HHTTCSEEEECCSC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhH--HHhhhhhhcCCCeEEcCCChHH-HhCCCCEEEECCCc
Confidence            7899996 9999999999999886  899999987666554  43321  1      11122222 35779999988765


Q ss_pred             CCCCC
Q 012866          374 GMHPN  378 (454)
Q Consensus       374 g~~p~  378 (454)
                      ...|.
T Consensus        79 ~~~~g   83 (144)
T d1mlda1          79 PRKPG   83 (144)
T ss_dssp             CCCTT
T ss_pred             CCCCC
Confidence            44443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.42  E-value=0.0016  Score=55.71  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=51.5

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccccccc--cCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDILN--FQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~~--~~~~~~divInat~  372 (454)
                      .|++|+|.|+ |+.|.+++..++..|++|+.+.+++++.+ +++++|... +++.+..+  .....+|+|++++.
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~-~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G  100 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA-LPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG  100 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH-HHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccc-cccccccceeeehhhhhhhhhccccccccccccc
Confidence            5789999996 89999999999999999888888887754 556777643 33333211  02457899999764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.39  E-value=0.002  Score=59.63  Aligned_cols=41  Identities=24%  Similarity=0.254  Sum_probs=36.7

Q ss_pred             CCCCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          299 SPLAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       299 ~~~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      .+++||++||.|++   |+|++++..|++.|++|++.+|+.+..
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~   47 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALN   47 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhh
Confidence            56899999999985   899999999999999999999986543

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.38  E-value=0.00055  Score=62.08  Aligned_cols=41  Identities=24%  Similarity=0.399  Sum_probs=36.7

Q ss_pred             CCCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHH
Q 012866          300 PLAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAK  340 (454)
Q Consensus       300 ~~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~  340 (454)
                      +++||++||.|++ |+|++++..|++.|++|++++|+.++.+
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~~~   45 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAPK   45 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCCT
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcchhc
Confidence            4889999999975 9999999999999999999999876544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0017  Score=59.86  Aligned_cols=71  Identities=17%  Similarity=0.254  Sum_probs=50.8

Q ss_pred             CceE-EEEcc-chhHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHhcC---Cc----cccccccc---c------CCCC
Q 012866          303 GRMF-VLAGA-GGAGRALAFGAKSR-GARVVIFDIDFERAKSLASDVMG---AA----RPFEDILN---F------QPEK  363 (454)
Q Consensus       303 ~k~v-lViGa-GG~arai~~~L~~~-G~~v~i~nRt~~~a~~la~~~~~---~~----~~~~~l~~---~------~~~~  363 (454)
                      ||+| ||.|+ +|+|++++..|++. |++|++++|+.++++++++++..   ..    +++.+.++   +      ....
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~   81 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG   81 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence            5677 56675 59999999999986 77999999999999999888742   11    23222111   0      1246


Q ss_pred             ccEEEECCCC
Q 012866          364 GAILANATPL  373 (454)
Q Consensus       364 ~divInat~~  373 (454)
                      .|++||....
T Consensus        82 iDiLVnNAGi   91 (275)
T d1wmaa1          82 LDVLVNNAGI   91 (275)
T ss_dssp             EEEEEECCCC
T ss_pred             cEEEEEcCCc
Confidence            8999998754

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.35  E-value=0.0013  Score=59.24  Aligned_cols=33  Identities=30%  Similarity=0.533  Sum_probs=31.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +|||+|||||.+|.++|+.|++.|.+|+|+.++
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~   33 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE   33 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            489999999999999999999999999999875

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=96.35  E-value=0.0026  Score=57.57  Aligned_cols=69  Identities=19%  Similarity=0.324  Sum_probs=47.7

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc---CCc----ccccc---cccc------CCCCccE
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDVM---GAA----RPFED---ILNF------QPEKGAI  366 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~~---~~~----~~~~~---l~~~------~~~~~di  366 (454)
                      -|||.|+ +|+|++++..|++.|++|++. .|+.++++++++++.   .+.    .++.+   ++++      .....|+
T Consensus         3 V~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi   82 (244)
T d1edoa_           3 VVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQIEAYGGQAITFGGDVSKEADVEAMMKTAIDAWGTIDV   82 (244)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHHTCEEEEEECCTTSHHHHHHHHHHHHHHSSCCSE
T ss_pred             EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCc
Confidence            4778886 599999999999999999885 678888888877653   221    12211   1110      2356899


Q ss_pred             EEECCCC
Q 012866          367 LANATPL  373 (454)
Q Consensus       367 vInat~~  373 (454)
                      +||+...
T Consensus        83 LVnnAg~   89 (244)
T d1edoa_          83 VVNNAGI   89 (244)
T ss_dssp             EEECCCC
T ss_pred             ccccccc
Confidence            9998643

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.31  E-value=0.0042  Score=53.40  Aligned_cols=71  Identities=13%  Similarity=0.124  Sum_probs=52.3

Q ss_pred             eEEEEccchhHHHHHHHHHHC-CCeEE-EEeCCHHHHHHHHHHhcCCc--ccccccccc-CCCCccEEEECCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSR-GARVV-IFDIDFERAKSLASDVMGAA--RPFEDILNF-QPEKGAILANATPLGM  375 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~-G~~v~-i~nRt~~~a~~la~~~~~~~--~~~~~l~~~-~~~~~divInat~~g~  375 (454)
                      ++.|||+|.+|+..+.++... +++|+ |++++.+++++++++++...  ..+++++++ .-.+.|+|+.|||...
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~   78 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSL   78 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchh
Confidence            689999999999999999877 45654 89999999999999887421  112333221 1246899999998654

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.26  E-value=0.0089  Score=49.43  Aligned_cols=72  Identities=18%  Similarity=0.218  Sum_probs=48.8

Q ss_pred             eEEEEc-cchhHHHHHHHHHHCCC--eEEEEeC--CHHHHHHHHHHhcC----C-c--cccccccccCCCCccEEEECCC
Q 012866          305 MFVLAG-AGGAGRALAFGAKSRGA--RVVIFDI--DFERAKSLASDVMG----A-A--RPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       305 ~vlViG-aGG~arai~~~L~~~G~--~v~i~nR--t~~~a~~la~~~~~----~-~--~~~~~l~~~~~~~~divInat~  372 (454)
                      |+.|+| +|..|.++++.|...|.  ++.+++.  ..++++..+.++..    . .  +...+.+  .+.++|+||.|..
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~--~~~~aDiVvitaG   79 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYE--DTAGSDVVVITAG   79 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGG--GGTTCSEEEECCC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHH--HhhhcCEEEEecc
Confidence            789999 69999999999999986  7999985  44556555544431    1 1  1112222  2467999998876


Q ss_pred             CCCCCC
Q 012866          373 LGMHPN  378 (454)
Q Consensus       373 ~g~~p~  378 (454)
                      ..-.|.
T Consensus        80 ~~~~~g   85 (142)
T d1o6za1          80 IPRQPG   85 (142)
T ss_dssp             CCCCTT
T ss_pred             cccccC
Confidence            544443

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=96.25  E-value=0.0019  Score=59.36  Aligned_cols=55  Identities=22%  Similarity=0.329  Sum_probs=43.1

Q ss_pred             EeeccHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          269 GYNTDCEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       269 G~NTD~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +-|-|+..++...+..+.            ..-..|+|+|||+|-+|.++|+.|++.|.+|+|+.++
T Consensus         8 ~~~~~~~~~~~~~~~~~~------------~~~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~   62 (370)
T d2iida1           8 FQENDYEEFLEIARNGLK------------ATSNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEAS   62 (370)
T ss_dssp             GCCTTHHHHHHHHHHCSC------------CCSSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             cCCccHHHHHHHHhcCCC------------CCCCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            457788887776544322            1224579999999999999999999999999999976

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=96.24  E-value=0.007  Score=51.34  Aligned_cols=71  Identities=18%  Similarity=0.199  Sum_probs=52.9

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccccc---c-cc----cCCCCccEEEECC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFED---I-LN----FQPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~~---l-~~----~~~~~~divInat  371 (454)
                      .|.+|+|+|+||.+-.++..++..|+ +|++++++++|. ++++++|... +...+   . .+    .....+|++++++
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl-~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~~  106 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF-EKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV  106 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH-HHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH-HHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeeec
Confidence            57889999999999999999999998 899999998885 5678888642 32221   1 00    0124689999988


Q ss_pred             CC
Q 012866          372 PL  373 (454)
Q Consensus       372 ~~  373 (454)
                      ..
T Consensus       107 G~  108 (175)
T d1cdoa2         107 GN  108 (175)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.0025  Score=57.78  Aligned_cols=41  Identities=15%  Similarity=0.225  Sum_probs=35.1

Q ss_pred             CCCceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHH
Q 012866          301 LAGRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKS  341 (454)
Q Consensus       301 ~~~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a~~  341 (454)
                      ++||++||.|++   |.|++++..|++.|++|++..|+.+..+.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~~~~   46 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGR   46 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTTHHH
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence            679999999964   79999999999999999999998554333

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.17  E-value=0.0077  Score=50.62  Aligned_cols=47  Identities=28%  Similarity=0.429  Sum_probs=41.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA  349 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~  349 (454)
                      .+.+|+|+|+|++|..++..++..|++|++++++++|. +++++++..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~-~~a~~~Ga~   73 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKL-ELARKLGAS   73 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH-HHHHHTTCS
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHH-HhhhccCcc
Confidence            47899999999999999999999999999999998885 466778764

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.07  E-value=0.008  Score=50.72  Aligned_cols=91  Identities=14%  Similarity=0.114  Sum_probs=59.0

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-ccc------cccccc-CCCCccEEEECC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPF------EDILNF-QPEKGAILANAT  371 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~------~~l~~~-~~~~~divInat  371 (454)
                      .+.+++|+|+ |++|..++..++..|+ +|+++.++++|. ++++++|... ++.      +++.+. ....+|++|+|+
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~-~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~  105 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV-EAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  105 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH-HHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhH-HHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence            4788999995 8999999999998997 999999998874 4567777532 111      111110 134589999998


Q ss_pred             CCCCCCCCCCCCCChhcccCCcEEEEE
Q 012866          372 PLGMHPNTDRVPVSEETLRDYQLVFDA  398 (454)
Q Consensus       372 ~~g~~p~~~~~~i~~~~l~~~~~v~D~  398 (454)
                      +....     .....+.++++..++-+
T Consensus       106 g~~~~-----~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2         106 NSEKT-----LSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             CCHHH-----HTTGGGGEEEEEEEEEC
T ss_pred             ccchH-----HHhhhhhcccCCEEEEe
Confidence            64211     01123456666555544

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.06  E-value=0.0024  Score=54.77  Aligned_cols=35  Identities=26%  Similarity=0.190  Sum_probs=32.0

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFE  337 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~  337 (454)
                      +|||+|||+|.+|..+|..|+++|+ +|+|+.|...
T Consensus         4 ~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           4 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            6899999999999999999999999 6999998743

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0066  Score=51.58  Aligned_cols=70  Identities=19%  Similarity=0.160  Sum_probs=51.1

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc------ccc-cCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED------ILN-FQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~------l~~-~~~~~~divInat~  372 (454)
                      .|.+|||.|+ |++|.+++..++.+|++|+++.+++++. ++++++|... ++..+      +.+ .....+|+++++++
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~-~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ-KIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH-HHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CCCEEEEEeccccccccccccccccCccccccccccccc-ccccccCcccccccccccHHHHhhhhhccCCceEEeeccc
Confidence            5789999996 9999999999999999998888887765 5667787642 22211      111 12356899999875

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.006  Score=52.68  Aligned_cols=70  Identities=20%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCc-cccc------cccccCCCCccEEEECCC
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAA-RPFE------DILNFQPEKGAILANATP  372 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~-~~~~------~l~~~~~~~~divInat~  372 (454)
                      +++|||.|| ||+|.+++.-++..|+ .|..+.++.++.+.+++.++... ++..      .+.+.....+|++++++.
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence            478999995 9999999999999999 67778889999899998888643 2211      122223457999999885

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.00  E-value=0.0033  Score=55.85  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .|+|+|||+|-+|.++|+.|+++|.+|+|+.|.
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            468999999999999999999999999999985

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0092  Score=49.52  Aligned_cols=134  Identities=12%  Similarity=0.118  Sum_probs=80.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC---Cc-----cccccccccCCCCccEEEECCCCCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG---AA-----RPFEDILNFQPEKGAILANATPLGMH  376 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~---~~-----~~~~~l~~~~~~~~divInat~~g~~  376 (454)
                      +++|+|.|..|+.++..|.+.|.+++++..++++..+..++...   .+     .+.+.|....+.++|.+|-+|+-...
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            69999999999999999999999999999998877766655421   11     12222333356789999988863110


Q ss_pred             CCCCCCCC--ChhcccCCcEEEEEecCCCCCHHHHHHHHCCCc-eeccHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 012866          377 PNTDRVPV--SEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI-IVSGVEMFLRQAIGQFNLFTGKEAPKEFMRE  448 (454)
Q Consensus       377 p~~~~~~i--~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~-~~~Gl~mlv~Qa~~~f~lw~g~~~p~~~~~~  448 (454)
                          ...+  ...-+.+..-++=.+.+|.....   .++.|+. +++- +.+..+.+.  +.-.|...+.+.+.+
T Consensus        85 ----n~~~~~~~r~~~~~~~iia~~~~~~~~~~---l~~~Gad~vi~p-~~~~~~~l~--~~l~~~~v~~~~~~~  149 (153)
T d1id1a_          85 ----NAFVVLSAKDMSSDVKTVLAVSDSKNLNK---IKMVHPDIILSP-QLFGSEILA--RVLNGEEINNDMLVS  149 (153)
T ss_dssp             ----HHHHHHHHHHHTSSSCEEEECSSGGGHHH---HHTTCCSEEECH-HHHHHHHHH--HHHTTCCCCHHHHHH
T ss_pred             ----HHHHHHHHHHhCCCCceEEEEcCHHHHHH---HHHCCCCEEECH-HHHHHHHHH--HHhCcCCCCHHHHHH
Confidence                0000  00113344335555566665544   4577885 4443 444444443  234456666655443

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=95.86  E-value=0.0085  Score=51.31  Aligned_cols=109  Identities=17%  Similarity=0.222  Sum_probs=69.7

Q ss_pred             eEEEEccchhHHH-HHHHHHHCC--CeE-EEEeCCHHHHHHHHHHhcCCc--cccccccccCCCCccEEEECCCCCCCCC
Q 012866          305 MFVLAGAGGAGRA-LAFGAKSRG--ARV-VIFDIDFERAKSLASDVMGAA--RPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       305 ~vlViGaGG~ara-i~~~L~~~G--~~v-~i~nRt~~~a~~la~~~~~~~--~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      ++.|||+|.+|+. .+.++.+.+  ++| .|++|+.++++.+++.++...  .+++++-+  ..+.|+|+.|||..... 
T Consensus         5 rigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~--~~~id~v~I~tp~~~h~-   81 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLE--SGLVDAVDLTLPVELNL-   81 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHH--SSCCSEEEECCCGGGHH-
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeecccc--ccccceeeccccccccc-
Confidence            7899999999986 467777654  355 489999999999999997642  24444322  24679999999865432 


Q ss_pred             CCCCCCChhcccCCc-EEEEEecCCCC------CHHHHHHHHCCCceeccHH
Q 012866          379 TDRVPVSEETLRDYQ-LVFDAVYTPRK------TRLLKDAEAAGAIIVSGVE  423 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~-~v~D~~y~P~~------T~ll~~A~~~G~~~~~Gl~  423 (454)
                          .+-...++.+. +++|   +|.-      -.+.+.+++.|..+.-|..
T Consensus        82 ----~~~~~al~~gk~V~~E---KPl~~~~~e~~~l~~~~~~~~~~~~v~~~  126 (181)
T d1zh8a1          82 ----PFIEKALRKGVHVICE---KPISTDVETGKKVVELSEKSEKTVYIAEN  126 (181)
T ss_dssp             ----HHHHHHHHTTCEEEEE---SSSSSSHHHHHHHHHHHHHCSSCEEEECG
T ss_pred             ----cccccccccchhhhcC---CCCcCCHHHHHHHHHHHHHhCCeEEEEee
Confidence                12233444443 3333   4542      2355666777776655543

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.85  E-value=0.096  Score=48.09  Aligned_cols=139  Identities=14%  Similarity=0.115  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEe-----------CCHHHHHHH
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFD-----------IDFERAKSL  342 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~n-----------Rt~~~a~~l  342 (454)
                      +.|.+.+++..+...+.... -..+.+++|++|+|-|.|.+|+.++..|.+.|++|+-++           -+.+...+.
T Consensus         8 G~GV~~~~~~~l~~~~~~~~-~gl~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~   86 (293)
T d1hwxa1           8 GRGVFHGIENFIENASYMSI-LGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDF   86 (293)
T ss_dssp             HHHHHHHHHHHHTCHHHHHH-HTCCSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchh-ccCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHH
Confidence            56677777665431000000 001236889999999999999999999999999765443           344555554


Q ss_pred             HHHhcCCc------cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCC
Q 012866          343 ASDVMGAA------RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGA  416 (454)
Q Consensus       343 a~~~~~~~------~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~  416 (454)
                      ....+...      .+-+++   .-..+||+|-|.--+....   .  ....+ ...+++.-.-+|....-.+.-+++|+
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~---~~~~~DIliPaA~~~~I~~---~--~a~~l-~ak~I~EgAN~P~t~eA~~~L~~~gI  157 (293)
T d1hwxa1          87 KLQHGTILGFPKAKIYEGSI---LEVDCDILIPAASEKQLTK---S--NAPRV-KAKIIAEGANGPTTPQADKIFLERNI  157 (293)
T ss_dssp             HHTTSSSTTCTTSCBCCSCG---GGCCCSEEEECSSSSCBCT---T--TGGGC-CCSEEECCSSSCBCHHHHHHHHHTTC
T ss_pred             HHHcCCeecccccccCCccc---ccCCccEEeeccccccccH---H--HHHHH-hhCEEeccCCCCCCcchHHHHHHCCC
Confidence            44333211      111122   1246899998765433211   1  11223 34678888878863333444557899


Q ss_pred             ceeccH
Q 012866          417 IIVSGV  422 (454)
Q Consensus       417 ~~~~Gl  422 (454)
                      .+++..
T Consensus       158 ~viPD~  163 (293)
T d1hwxa1         158 MVIPDL  163 (293)
T ss_dssp             EEECHH
T ss_pred             EEeChh
Confidence            887754

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0032  Score=52.73  Aligned_cols=67  Identities=13%  Similarity=0.026  Sum_probs=44.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCcccc-----ccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPF-----EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~-----~~l~~~~~~~~divInat~~  373 (454)
                      |++|+|+|.+|.+++..|++.|.+|++++|+.++.+.+.. .+......     .+..+ ....+|+||.|++.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~D~iii~vka   73 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNL-VETDGSIFNESLTANDPD-FLATSDLLLVTLKA   73 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEE-ECTTSCEEEEEEEESCHH-HHHTCSEEEECSCG
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhcc-ccCCccccccccccchhh-hhcccceEEEeecc
Confidence            6899999999999999999999999999998765432211 01100000     01111 23467999988875

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=95.67  E-value=0.011  Score=50.20  Aligned_cols=105  Identities=15%  Similarity=0.186  Sum_probs=64.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHC-CCe-EEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSR-GAR-VVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPNTDR  381 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~-G~~-v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~  381 (454)
                      -++.|+|+|.+|+..+.++.+. +++ +.|++|+.++++.      .......+... ...+.|+|+.|||.....    
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~------~~~~~~~~~~~-~~~~~D~Vvi~tp~~~h~----   72 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK------TPVFDVADVDK-HADDVDVLFLCMGSATDI----   72 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS------SCEEEGGGGGG-TTTTCSEEEECSCTTTHH----
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc------cccccchhhhh-hccccceEEEeCCCcccH----
Confidence            3789999999999999999876 454 6688888654221      11112223333 346789999999976432    


Q ss_pred             CCCChhcccCCcEEEEEecCCCC------CHHHHHHHHCCCceecc
Q 012866          382 VPVSEETLRDYQLVFDAVYTPRK------TRLLKDAEAAGAIIVSG  421 (454)
Q Consensus       382 ~~i~~~~l~~~~~v~D~~y~P~~------T~ll~~A~~~G~~~~~G  421 (454)
                       ++-...|+.+.-|++ ...|..      ..+.+.|++.|...+-|
T Consensus        73 -~~a~~aL~aG~~vv~-~~~~~~~~~~~~~~l~~~A~~~~~~~~i~  116 (170)
T d1f06a1          73 -PEQAPKFAQFACTVD-TYDNHRDIPRHRQVMNEAATAAGNVALVS  116 (170)
T ss_dssp             -HHHHHHHTTTSEEEC-CCCCGGGHHHHHHHHHHHHHHHTCEEECS
T ss_pred             -HHHHHHHHCCCcEEE-ecCccccCHHHHHHHHHHHHhcCceEEEe
Confidence             233455677665443 223321      24555677778764433

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.67  E-value=0.0067  Score=54.80  Aligned_cols=43  Identities=26%  Similarity=0.379  Sum_probs=36.0

Q ss_pred             eEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHH-HHHHHHHHhc
Q 012866          305 MFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFE-RAKSLASDVM  347 (454)
Q Consensus       305 ~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~-~a~~la~~~~  347 (454)
                      .+||.|++ |+|++++.+|++.|++|++..|+.+ .++++++++.
T Consensus         3 vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~~~~~~~~~~   47 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGAAQRLVAELN   47 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHHH
Confidence            47899974 9999999999999999999999855 4677777663

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.63  E-value=0.014  Score=49.88  Aligned_cols=70  Identities=17%  Similarity=0.167  Sum_probs=49.9

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc------cc-cccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE------DI-LNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~------~l-~~~~~~~~divInat~  372 (454)
                      +|.+|+|.|+ |+.|.+++...+..|++|+.+.|+.++.+ +++.++... +...      .+ .......+|+++|++.
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~-~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIA-YLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH-HHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHH-HHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence            5889999998 56899999888899999999999988754 456666532 2111      11 1113467899999885

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.0033  Score=61.78  Aligned_cols=35  Identities=29%  Similarity=0.441  Sum_probs=31.5

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++.+|||+|+||.|..++..|+..|+ +|+|++.+
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D   70 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMD   70 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCC
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECC
Confidence            346789999999999999999999999 99999864

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.51  E-value=0.012  Score=49.98  Aligned_cols=70  Identities=21%  Similarity=0.178  Sum_probs=50.7

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc--cc----ccc-CCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE--DI----LNF-QPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~--~l----~~~-~~~~~divInat~  372 (454)
                      +|++|||.|+ |+.|.+++.-++..|+++.++.++.++. +.+++++... ++..  ++    .+. ...++|++++++.
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~-~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g  103 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKR-EMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA  103 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHH-HHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccc-cccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc
Confidence            4789999995 9999999998889999988888988885 4566777543 2211  11    110 2356899999886

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=95.51  E-value=0.0042  Score=55.31  Aligned_cols=36  Identities=42%  Similarity=0.649  Sum_probs=32.4

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      +|++||.|+ +|+|++++..|++.|++|++++|+.+.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~   37 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG   37 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc
Confidence            478999997 599999999999999999999998664

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=95.50  E-value=0.0094  Score=50.14  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=60.2

Q ss_pred             ceEEEEccchhHHH-HHHHHHHCCC-e-EEEEeCCHH-HHHHHHHHhcCCcc--ccccccc-cCCCCccEEEECCCCCCC
Q 012866          304 RMFVLAGAGGAGRA-LAFGAKSRGA-R-VVIFDIDFE-RAKSLASDVMGAAR--PFEDILN-FQPEKGAILANATPLGMH  376 (454)
Q Consensus       304 k~vlViGaGG~ara-i~~~L~~~G~-~-v~i~nRt~~-~a~~la~~~~~~~~--~~~~l~~-~~~~~~divInat~~g~~  376 (454)
                      -++.|||+|++|+. +...|..... + +.+++|+.+ +..+.++.++....  .++++.+ ....+.|+|+.|||.|..
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            47999999999986 4556666555 5 466788865 55677888876431  2233221 012468999999998753


Q ss_pred             CCCCCCCCChhcccCCcEEEEEecC
Q 012866          377 PNTDRVPVSEETLRDYQLVFDAVYT  401 (454)
Q Consensus       377 p~~~~~~i~~~~l~~~~~v~D~~y~  401 (454)
                      ...   ......++.+..|+|..-.
T Consensus        85 ~~~---~~~~~aa~~G~~VID~s~a  106 (157)
T d1nvmb1          85 VQN---EALLRQAKPGIRLIDLTPA  106 (157)
T ss_dssp             HHH---HHHHHHHCTTCEEEECSTT
T ss_pred             HHh---HHHHHHHHcCCEEEEcccc
Confidence            210   0112235778899999764

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=95.50  E-value=0.0017  Score=58.76  Aligned_cols=34  Identities=26%  Similarity=0.364  Sum_probs=29.9

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      |.|||.|+ +|+|++++..|++.|++|++++|+.+
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~   36 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDA   36 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChH
Confidence            56888896 69999999999999999999998753

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.47  E-value=0.0051  Score=51.13  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=34.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +.++||+|||+|+|..|..-+..|.+.|++|+|+...
T Consensus         9 ~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~   45 (150)
T d1kyqa1           9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD   45 (150)
T ss_dssp             ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred             eeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            5688999999999999999999999999999999754

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=95.44  E-value=0.1  Score=47.05  Aligned_cols=128  Identities=17%  Similarity=0.152  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHHCCCeEE-EEeC----------CHHHHHHH
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKSRGARVV-IFDI----------DFERAKSL  342 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~~G~~v~-i~nR----------t~~~a~~l  342 (454)
                      +.|.+.+++..+..         .+.++++++|+|-|.|.+|+.++..|.+.|++|+ |.+.          +.+...+.
T Consensus        16 G~Gv~~~~~~~~~~---------~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~   86 (255)
T d1bgva1          16 GYGSVYYVEAVMKH---------ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINY   86 (255)
T ss_dssp             HHHHHHHHHHHHHH---------TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHH
T ss_pred             hHHHHHHHHHHHHh---------CCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHH
Confidence            56777777776652         2357899999999999999999999999999754 4332          12332222


Q ss_pred             HHH---------------hcCCccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhc---cc--CCcEEEEEecCC
Q 012866          343 ASD---------------VMGAARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEET---LR--DYQLVFDAVYTP  402 (454)
Q Consensus       343 a~~---------------~~~~~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~---l~--~~~~v~D~~y~P  402 (454)
                      ..+               .+...++-+++-   -.++|++|-|.--+        .+..+.   +.  ..++|+.-.-+|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~DiliPcA~~~--------~I~~~~a~~l~a~~ck~I~EgAN~p  155 (255)
T d1bgva1          87 MLEMRASGRNKVQDYADKFGVQFFPGEKPW---GQKVDIIMPCATQN--------DVDLEQAKKIVANNVKYYIEVANMP  155 (255)
T ss_dssp             HHHHHHHCCCCTHHHHHHHTCEEEETCCGG---GSCCSEEECCSCTT--------CBCHHHHHHHHHTTCCEEECCSSSC
T ss_pred             HHHHhhhcCcchhhhhhhcCceeechhhcc---cccccEEeeccccc--------cccHHHHHhhhhcCceEEecCCCCC
Confidence            211               111111222221   24689998654322        245433   32  246889988777


Q ss_pred             CCCHHH-HH-HHHCCCceeccH
Q 012866          403 RKTRLL-KD-AEAAGAIIVSGV  422 (454)
Q Consensus       403 ~~T~ll-~~-A~~~G~~~~~Gl  422 (454)
                      . |+-- +. .+++|+.+++..
T Consensus       156 ~-t~ea~~~ll~~~gI~vvPD~  176 (255)
T d1bgva1         156 T-TNEALRFLMQQPNMVVAPSK  176 (255)
T ss_dssp             B-CHHHHHHHHHCTTCEEECHH
T ss_pred             c-chHHHHHHHHhcCCEEehHh
Confidence            5 5433 33 345788776654

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.35  E-value=0.007  Score=52.74  Aligned_cols=69  Identities=10%  Similarity=-0.004  Sum_probs=46.0

Q ss_pred             ceEEEEc-cchhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccc---cccccCCCCccEEEECCCC
Q 012866          304 RMFVLAG-AGGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFE---DILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViG-aGG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~---~l~~~~~~~~divInat~~  373 (454)
                      ++|||+| +|.+|++++..|.+.|.  .|+...|++++.+.+.........++.   .+.+ ...++|.||++...
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~d~vi~~a~~   78 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINP-AFQGIDALVILTSA   78 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHH-HHTTCSEEEECCCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeecccccccc-ccccceeeEEEEee
Confidence            6899999 58999999999999996  566678998876654322111111222   2222 34678999987654

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=95.27  E-value=0.034  Score=51.98  Aligned_cols=72  Identities=11%  Similarity=0.015  Sum_probs=50.5

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcC----Cc-----ccc---ccccccCCCCccEE
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMG----AA-----RPF---EDILNFQPEKGAIL  367 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~----~~-----~~~---~~l~~~~~~~~div  367 (454)
                      -+||+|||.|+. -+|+.++..|.+.|++|..+.|+.++...+......    ..     .++   +.+.. .+.++|.|
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~-~~~~~~~v   87 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDE-VIKGAAGV   87 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTT-TTTTCSEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhh-hcccchhh
Confidence            358999999975 589999999999999999999998887766543321    10     112   12223 45678888


Q ss_pred             EECCCC
Q 012866          368 ANATPL  373 (454)
Q Consensus       368 Inat~~  373 (454)
                      ++....
T Consensus        88 ~~~a~~   93 (342)
T d1y1pa1          88 AHIASV   93 (342)
T ss_dssp             EECCCC
T ss_pred             hhhccc
Confidence            876643

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.20  E-value=0.017  Score=48.27  Aligned_cols=48  Identities=31%  Similarity=0.407  Sum_probs=41.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA  350 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~  350 (454)
                      .+.+|+|.|+|++|..++..++..|++|+++.++++|.+ ++++++...
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~-~~k~~Ga~~   74 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLE-LAKELGADL   74 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH-HHHHTTCSE
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhh-hhhhcCcce
Confidence            578999999999999999999999999999999999865 567787643

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.18  E-value=0.011  Score=50.36  Aligned_cols=69  Identities=17%  Similarity=0.126  Sum_probs=55.2

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      +++|+|.|||-|--|+|=+..|.+.|++|+|-.|...+..+.|+.-|.+..++++.    .+.+|+|...+|-
T Consensus        14 ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA----~~~aDiim~L~PD   82 (182)
T d1np3a2          14 IQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTA----VAAADVVMILTPD   82 (182)
T ss_dssp             HHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHH----HHTCSEEEECSCH
T ss_pred             HCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHH----hhhcCeeeeecch
Confidence            56899999999999999999999999999999998877777777656555454443    3467888887763

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=95.12  E-value=0.0082  Score=53.58  Aligned_cols=34  Identities=15%  Similarity=0.219  Sum_probs=31.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .+||+|||||.+|.++|..|++.|.+|+|+.|+.
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999853

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.11  E-value=0.0092  Score=55.85  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=31.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .|+++|||||-+|.++|+.|++.|.+|+|+.++
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~   34 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQR   34 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECC
Confidence            589999999999999999999999999999987

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.09  E-value=0.0077  Score=53.91  Aligned_cols=36  Identities=19%  Similarity=0.245  Sum_probs=31.9

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      +||+|||.|+ ||+|++++..|++.|++|.+++|...
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            4799999997 69999999999999999999988643

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0048  Score=55.66  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=31.7

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++++|+|+|+||.|..++..|+..|+ ++++++.+
T Consensus        28 L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          28 LKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            457899999999999999999999999 99998843

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.04  E-value=0.017  Score=49.12  Aligned_cols=70  Identities=20%  Similarity=0.202  Sum_probs=45.0

Q ss_pred             ceEEEEccchhH--HHHHHHHHHC----CCeEEEEeCCHHHHHHHHHHhc-------CCc--cccccccccCCCCccEEE
Q 012866          304 RMFVLAGAGGAG--RALAFGAKSR----GARVVIFDIDFERAKSLASDVM-------GAA--RPFEDILNFQPEKGAILA  368 (454)
Q Consensus       304 k~vlViGaGG~a--rai~~~L~~~----G~~v~i~nRt~~~a~~la~~~~-------~~~--~~~~~l~~~~~~~~divI  368 (454)
                      -|+.|||+|..|  .+++..|...    +.+|+++++++++++..+..+.       ...  ....+..+ .+.++|+||
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~e-aL~dad~Vv   81 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDD-VIIDADFVI   81 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH-HHTTCSEEE
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhh-cccCCCeEe
Confidence            379999999554  4555555532    2399999999999876543332       111  11123334 467899999


Q ss_pred             ECCCCC
Q 012866          369 NATPLG  374 (454)
Q Consensus       369 nat~~g  374 (454)
                      ++..+|
T Consensus        82 ~~~~~g   87 (171)
T d1obba1          82 NTAMVG   87 (171)
T ss_dssp             ECCCTT
T ss_pred             eecccc
Confidence            987655

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.00  E-value=0.79  Score=40.45  Aligned_cols=130  Identities=17%  Similarity=0.177  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHHH-CCCeE-EEEeC----------CHHHHHH
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAKS-RGARV-VIFDI----------DFERAKS  341 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~~-~G~~v-~i~nR----------t~~~a~~  341 (454)
                      +.|...+++..+...+        ..+++|++|+|-|.|.+|..++..|.+ .|++| .+.+.          +.+...+
T Consensus        11 g~Gv~~~~~~~~~~~g--------~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~   82 (239)
T d1gtma1          11 ARGASYTIREAAKVLG--------WDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLK   82 (239)
T ss_dssp             HHHHHHHHHHHHHHTT--------CSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHH
T ss_pred             hHHHHHHHHHHHHHhC--------CCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHH
Confidence            5677777776665221        134899999999999999999999875 58854 45443          2344444


Q ss_pred             HHHHhcCC-------ccccccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc--CCcEEEEEecCCCCCHHHHHHH
Q 012866          342 LASDVMGA-------ARPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKTRLLKDAE  412 (454)
Q Consensus       342 la~~~~~~-------~~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T~ll~~A~  412 (454)
                      .....+..       .++.+++   ...++||++-|.--+.        +..+...  ...+++.-.-+|....--+.-.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i---~~~~~DIl~PcA~~~~--------I~~~~a~~i~ak~I~e~AN~p~t~ea~~~L~  151 (239)
T d1gtma1          83 WKNEHGSVKDFPGATNITNEEL---LELEVDVLAPAAIEEV--------ITKKNADNIKAKIVAEVANGPVTPEADEILF  151 (239)
T ss_dssp             HHHHHSSSTTCTTSEEECHHHH---HHSCCSEEEECSCSCC--------BCTTGGGGCCCSEEECCSSSCBCHHHHHHHH
T ss_pred             HHHhccccccCCCCeeeccccc---ccccccEEeecccccc--------ccHHHHHhccccEEEecCCCCCCHHHHHHHH
Confidence            33332211       1111222   1246899998776443        2222221  3467888887886433334456


Q ss_pred             HCCCceeccH
Q 012866          413 AAGAIIVSGV  422 (454)
Q Consensus       413 ~~G~~~~~Gl  422 (454)
                      ++|+.+++..
T Consensus       152 ~rgI~~iPD~  161 (239)
T d1gtma1         152 EKGILQIPDF  161 (239)
T ss_dssp             HTTCEEECHH
T ss_pred             HCCCEEecch
Confidence            7899877654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.012  Score=53.28  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=31.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +.++|+|||||-+|.++|+.|++.|.+|+|+.++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            3568999999999999999999999999999875

>d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase sniffer
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.88  E-value=0.0082  Score=54.08  Aligned_cols=42  Identities=19%  Similarity=0.182  Sum_probs=35.8

Q ss_pred             CceEEEEcc-chhHHHHHHHHHH---CCCeEEEEeCCHHHHHHHHH
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKS---RGARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~---~G~~v~i~nRt~~~a~~la~  344 (454)
                      -|+|||.|+ +|.|++++..|.+   .|++|+++.|+.++++++.+
T Consensus         2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~~~~~~   47 (248)
T d1snya_           2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQAKELED   47 (248)
T ss_dssp             CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSCHHHHH
T ss_pred             cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence            378999997 5999999999864   67899999999998887754

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=94.77  E-value=0.016  Score=52.81  Aligned_cols=42  Identities=24%  Similarity=0.362  Sum_probs=34.3

Q ss_pred             EEEEcc-chhHHHHHHHHHHCCCeEEEE-eCCHHHHHHHHHHhc
Q 012866          306 FVLAGA-GGAGRALAFGAKSRGARVVIF-DIDFERAKSLASDVM  347 (454)
Q Consensus       306 vlViGa-GG~arai~~~L~~~G~~v~i~-nRt~~~a~~la~~~~  347 (454)
                      +||.|+ +|+|++++..|++.|++|+|. .|+.++++++++++.
T Consensus         5 AlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~~l~   48 (284)
T d1e7wa_           5 ALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEANALSATLN   48 (284)
T ss_dssp             EEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHHHHH
Confidence            567786 599999999999999998875 556778888877664

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.74  E-value=0.012  Score=51.18  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +|+|||||-+|.++|+.|++.|. +|+|+.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~   33 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEAT   33 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECC
Confidence            59999999999999999999998 79999986

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=94.71  E-value=0.013  Score=52.12  Aligned_cols=36  Identities=22%  Similarity=0.181  Sum_probs=33.0

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      -.+|+|+|||+|.+|.++|..|+++|.+|+|+.++.
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            357899999999999999999999999999999864

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.68  E-value=0.032  Score=47.10  Aligned_cols=70  Identities=17%  Similarity=0.159  Sum_probs=49.8

Q ss_pred             CCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-cccc--c----cccc-CCCCccEEEECCC
Q 012866          302 AGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFE--D----ILNF-QPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~--~----l~~~-~~~~~divInat~  372 (454)
                      .|++|+|.|+| +.|.+++..++..|++|+++.++.++.+ +++++|... ++..  +    +.+. .-...|+++++..
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~-~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g  106 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQ-SALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG  106 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHH-HHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHH-HHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc
Confidence            47899999765 5899998888899999999999998864 456777542 2221  1    1110 1346799999885

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.66  E-value=0.019  Score=45.87  Aligned_cols=35  Identities=26%  Similarity=0.232  Sum_probs=32.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      ++|+++|+|+|.+|.-+|..|.++|.+|+++.|..
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC
Confidence            46899999999999999999999999999998763

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.63  E-value=0.018  Score=45.43  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=31.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++++|||+|-+|--+|..|.++|.+|+++.|..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            4789999999999999999999999999999864

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.63  E-value=0.02  Score=45.74  Aligned_cols=34  Identities=24%  Similarity=0.380  Sum_probs=31.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +++++|+|+|-+|--+|.+|+++|.+|+++.|..
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            5899999999999999999999999999999864

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=94.62  E-value=0.013  Score=49.70  Aligned_cols=72  Identities=15%  Similarity=0.107  Sum_probs=44.5

Q ss_pred             CceEEEEccchhH--HHHHHHHHHC---CC-eEEEEeCCHHHHHHHHHHhcC-------Cc--cccccccccCCCCccEE
Q 012866          303 GRMFVLAGAGGAG--RALAFGAKSR---GA-RVVIFDIDFERAKSLASDVMG-------AA--RPFEDILNFQPEKGAIL  367 (454)
Q Consensus       303 ~k~vlViGaGG~a--rai~~~L~~~---G~-~v~i~nRt~~~a~~la~~~~~-------~~--~~~~~l~~~~~~~~div  367 (454)
                      .-|+.|||||..+  .++...|...   .. +|++++.+.++++..+..+..       ..  ....+..+ .++++|+|
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e-al~~AD~V   81 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEE-AFTDVDFV   81 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHH-HHSSCSEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhh-ccCCCCEE
Confidence            3579999999554  3444444322   23 899999999998865443321       11  11123333 35789999


Q ss_pred             EECCCCCC
Q 012866          368 ANATPLGM  375 (454)
Q Consensus       368 Inat~~g~  375 (454)
                      |+|...+-
T Consensus        82 vitag~~~   89 (167)
T d1u8xx1          82 MAHIRVGK   89 (167)
T ss_dssp             EECCCTTH
T ss_pred             EECCCcCC
Confidence            99987643

>d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Halohydrin dehalogenase HheC
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.59  E-value=0.011  Score=53.39  Aligned_cols=40  Identities=18%  Similarity=0.235  Sum_probs=35.4

Q ss_pred             eEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH
Q 012866          305 MFVLAGAG-GAGRALAFGAKSRGARVVIFDIDFERAKSLAS  344 (454)
Q Consensus       305 ~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~~~a~~la~  344 (454)
                      ++||.|++ |.|++++..|++.|++|.+.+|+.++.+++..
T Consensus         2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~   42 (252)
T d1zmta1           2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEA   42 (252)
T ss_dssp             EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence            68999975 99999999999999999999999888777654

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.017  Score=45.63  Aligned_cols=34  Identities=24%  Similarity=0.242  Sum_probs=31.5

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++++|+|+|-+|--+|..|+++|.+|+|+.|..
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            3789999999999999999999999999999964

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.52  E-value=0.029  Score=47.87  Aligned_cols=71  Identities=15%  Similarity=0.083  Sum_probs=50.1

Q ss_pred             CCCceEEEEc-cchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc-----ccccCCCCccEEEECCC
Q 012866          301 LAGRMFVLAG-AGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED-----ILNFQPEKGAILANATP  372 (454)
Q Consensus       301 ~~~k~vlViG-aGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~-----l~~~~~~~~divInat~  372 (454)
                      ..|.+|||.| +||.|.+++.-++..|++|+.+.++.++.+ +++.++... ++.++     .........|+|+++..
T Consensus        30 ~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~-~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          30 PERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHD-YLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             GGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHH-HHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred             CCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHH-HHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence            4578999999 589999999988899999999999988854 556676543 22221     11112357899999764

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.46  E-value=1.1  Score=39.45  Aligned_cols=130  Identities=15%  Similarity=0.139  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCCCCCCCceEEEEccchhHHHHHHHHH-HCCCeEEEEe-C----------CHHHHHH
Q 012866          274 CEASITAIEDAIKERGYKNGTASFGSPLAGRMFVLAGAGGAGRALAFGAK-SRGARVVIFD-I----------DFERAKS  341 (454)
Q Consensus       274 ~~G~~~~l~~~l~~~~~~~~~~~~~~~~~~k~vlViGaGG~arai~~~L~-~~G~~v~i~n-R----------t~~~a~~  341 (454)
                      +.|...+++..+..         .+.++++++|+|-|.|.+|+.++..|. +.|++|+.++ .          +.+....
T Consensus        11 g~Gv~~~~~~~~~~---------~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~   81 (234)
T d1b26a1          11 GRGVKVCAGLAMDV---------LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIR   81 (234)
T ss_dssp             HHHHHHHHHHHHHH---------TTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHH---------cCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHH
Confidence            56677777665542         235689999999999999999999996 5698655333 2          3344444


Q ss_pred             HHHHhcCCc-------cccccccccCCCCccEEEECCCCCCCCCCCCCCCChhccc--CCcEEEEEecCCCCCHHHHHHH
Q 012866          342 LASDVMGAA-------RPFEDILNFQPEKGAILANATPLGMHPNTDRVPVSEETLR--DYQLVFDAVYTPRKTRLLKDAE  412 (454)
Q Consensus       342 la~~~~~~~-------~~~~~l~~~~~~~~divInat~~g~~p~~~~~~i~~~~l~--~~~~v~D~~y~P~~T~ll~~A~  412 (454)
                      ..+..+...       ++.+++   ...++||++-|.--+        .|..+..+  ...+|+.-.-+|....--+.-.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~DI~~PcA~~~--------~I~~~~a~~l~~~~I~e~AN~p~t~~a~~~L~  150 (234)
T d1b26a1          82 YKKEHGTVVTYPKGERITNEEL---LELDVDILVPAALEG--------AIHAGNAERIKAKAVVEGANGPTTPEADEILS  150 (234)
T ss_dssp             HHHHSSCSTTCSSCEEECHHHH---HTSCCSEEEECSCTT--------CBCHHHHTTCCCSEEECCSSSCBCHHHHHHHH
T ss_pred             HHHhhcceeccccceeeccccc---cccccceeecchhcc--------cccHHHHHHhhhceEeecCCCCCCHHHHHHHH
Confidence            444333211       111111   124689999775432        24443322  2357888887775333333345


Q ss_pred             HCCCceeccHH
Q 012866          413 AAGAIIVSGVE  423 (454)
Q Consensus       413 ~~G~~~~~Gl~  423 (454)
                      ++|+.+++..-
T Consensus       151 ~rgI~~~PD~~  161 (234)
T d1b26a1         151 RRGILVVPDIL  161 (234)
T ss_dssp             HTTCEEECHHH
T ss_pred             HCCeEEechHH
Confidence            68988776543

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.045  Score=45.09  Aligned_cols=71  Identities=21%  Similarity=0.256  Sum_probs=46.9

Q ss_pred             eEEEEc-cchhHHHHHHHHH-HCCC--eEEEEeCCHHHHHHHHHHhcCCc--c------ccccccccCCCCccEEEECCC
Q 012866          305 MFVLAG-AGGAGRALAFGAK-SRGA--RVVIFDIDFERAKSLASDVMGAA--R------PFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       305 ~vlViG-aGG~arai~~~L~-~~G~--~v~i~nRt~~~a~~la~~~~~~~--~------~~~~l~~~~~~~~divInat~  372 (454)
                      |+.||| +|..|.++++.|+ +.+.  ++.+++..+ +++..+-++....  .      ..++.+  ..+++|+||.|..
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~-~~~g~a~Dl~h~~~~~~~~~~~~~~~~~--~~~~aDvvvitaG   78 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP-VTPGVAVDLSHIPTAVKIKGFSGEDATP--ALEGADVVLISAG   78 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST-THHHHHHHHHTSCSSCEEEEECSSCCHH--HHTTCSEEEECCS
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc-cchhHHHHHHCCccccCCcEEEcCCCcc--ccCCCCEEEECCC
Confidence            688999 5999999999986 4453  899999864 5666655554311  0      111122  2467999999876


Q ss_pred             CCCCCC
Q 012866          373 LGMHPN  378 (454)
Q Consensus       373 ~g~~p~  378 (454)
                      ..-.|.
T Consensus        79 ~~~k~g   84 (145)
T d2cmda1          79 VRRKPG   84 (145)
T ss_dssp             CCCCTT
T ss_pred             ccCCCC
Confidence            544443

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.40  E-value=0.078  Score=38.66  Aligned_cols=46  Identities=22%  Similarity=0.186  Sum_probs=37.2

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVM  347 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~  347 (454)
                      -++.+++|.|+ ||+|..++.-++..|++|+.+.+++++.+-+ +++|
T Consensus        30 ~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~-~~lG   76 (77)
T d1o8ca2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYL-KSLG   76 (77)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHH-HHHT
T ss_pred             cCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHH-HHCC
Confidence            45788999986 8999999998899999999999998886543 4443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.38  E-value=0.02  Score=45.44  Aligned_cols=33  Identities=21%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .++++|+|+|-+|--+|..|+.+|.+|+++.|.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~   54 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG   54 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehh
Confidence            478999999999999999999999999999985

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.37  E-value=0.02  Score=45.68  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++++|||+|-.|--+|..|.++|++|+|+.|..
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            4799999999999999999999999999999864

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.36  E-value=0.016  Score=48.18  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~  336 (454)
                      |||++|||+|-+|-.++..|.++|.  +|+++.+++
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            7899999999999999999999885  899998875

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=94.34  E-value=0.03  Score=49.90  Aligned_cols=72  Identities=7%  Similarity=0.112  Sum_probs=49.7

Q ss_pred             ceEEEEccch----hHHHHHHHHHHC--CCeEE-EEeCCHHHHHHHHHHhcCCc-ccccccccc-CCCCccEEEECCCCC
Q 012866          304 RMFVLAGAGG----AGRALAFGAKSR--GARVV-IFDIDFERAKSLASDVMGAA-RPFEDILNF-QPEKGAILANATPLG  374 (454)
Q Consensus       304 k~vlViGaGG----~arai~~~L~~~--G~~v~-i~nRt~~~a~~la~~~~~~~-~~~~~l~~~-~~~~~divInat~~g  374 (454)
                      =++.|||+|+    +++.-+.++.+.  +++|+ |++|+.+++++++++++... ..+++++++ .-.+.|+|+.+||..
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~   96 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVP   96 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCc
Confidence            4799999986    455555666654  45654 99999999999999987543 223333321 125689999999864


Q ss_pred             C
Q 012866          375 M  375 (454)
Q Consensus       375 ~  375 (454)
                      .
T Consensus        97 ~   97 (237)
T d2nvwa1          97 E   97 (237)
T ss_dssp             H
T ss_pred             c
Confidence            3

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=94.33  E-value=0.014  Score=51.99  Aligned_cols=31  Identities=29%  Similarity=0.482  Sum_probs=29.2

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +|+|||||-+|.++|+.|++.|++|+|+.++
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~   32 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESS   32 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            5899999999999999999999999999875

>d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Erythromycin synthase, eryAI, 1st ketoreductase module
species: Saccharopolyspora erythraea [TaxId: 1836]

Probab=94.32  E-value=0.022  Score=51.27  Aligned_cols=44  Identities=23%  Similarity=0.385  Sum_probs=35.9

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCC-eEEEEeCCH---HHHHHHHHHh
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGA-RVVIFDIDF---ERAKSLASDV  346 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~-~v~i~nRt~---~~a~~la~~~  346 (454)
                      ++++||.|+ ||+|++++..|++.|+ +|.+++|+.   +.++++.+++
T Consensus         9 ~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~~~~~~~~~l   57 (259)
T d2fr1a1           9 TGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDADGAGELVAEL   57 (259)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGSTTHHHHHHHH
T ss_pred             cCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHHHHHHHHHHH
Confidence            568999995 7999999999999999 799999974   4456665554

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.24  E-value=0.012  Score=52.30  Aligned_cols=73  Identities=15%  Similarity=0.153  Sum_probs=47.4

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHH-HHHhcCCcccccccccc--CCCCccEEEECCCC
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSL-ASDVMGAARPFEDILNF--QPEKGAILANATPL  373 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~~~a~~l-a~~~~~~~~~~~~l~~~--~~~~~divInat~~  373 (454)
                      .++++|||+|| |-.|+.++..|.+.|.  +|++++|++.+.... ...+.....++++++++  ...++|.+|++...
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            35789999996 7889999999998885  899999975432211 01111111233333221  45778999998754

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=94.23  E-value=0.071  Score=44.85  Aligned_cols=70  Identities=20%  Similarity=0.169  Sum_probs=49.9

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccc-----ccccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFED-----ILNFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~-----l~~~~~~~~divInat~  372 (454)
                      ++.+|||-|| ||.|.+++.-.+.+|++|+.+.|+.++.+.+ +.++... ++.++     +........|+++++..
T Consensus        23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~-~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYL-KQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHH-HHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHH-HhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence            4667999995 8999999988889999999999998886655 5566543 22221     21112356899998764

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.18  E-value=0.015  Score=51.73  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      .++|||.|+ ||+|++++..|++.|++|++++|+.+
T Consensus         2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            357999996 59999999999999999999999864

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.03  E-value=0.025  Score=45.00  Aligned_cols=34  Identities=21%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++++|+|+|-+|--+|..|.++|.+|+++.|.+
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            4789999999999999999999999999999864

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.02  E-value=0.021  Score=49.22  Aligned_cols=32  Identities=19%  Similarity=0.126  Sum_probs=29.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .|+|||||-+|.++|+.|++.|.+|+|+.++.
T Consensus         7 DviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           7 DVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            48999999999999999999999999999964

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=94.01  E-value=0.14  Score=43.42  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=48.6

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-ccccccc---ccCCCCccEEEECCC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-RPFEDIL---NFQPEKGAILANATP  372 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-~~~~~l~---~~~~~~~divInat~  372 (454)
                      ++.++||.|+ ||.|.+++.-++.+|++|+.+.|+.++.+. +++++... ++.++..   .......|.+|++..
T Consensus        31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~-~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg  105 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEY-LKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG  105 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHH-HHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC
T ss_pred             CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHH-HHhhccccccccccHHHHHHHHhhcCCeeEEEcc
Confidence            3457888875 899999999999999999999999998654 46666532 2322211   111244688888764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.94  E-value=0.03  Score=44.75  Aligned_cols=33  Identities=18%  Similarity=0.101  Sum_probs=31.2

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .|+++|+|+|-+|--+|..|+++|.+|+++.|.
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~   54 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRH   54 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeec
Confidence            379999999999999999999999999999996

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=93.82  E-value=0.036  Score=43.84  Aligned_cols=34  Identities=24%  Similarity=0.158  Sum_probs=31.4

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++++|||+|-.|.-+|..|+++|++|+++.|..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            4789999999999999999999999999999863

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=93.82  E-value=0.024  Score=50.84  Aligned_cols=32  Identities=22%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .|+|||+|-+|.++|+.|++.|.+|+|+.|..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999864

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.74  E-value=0.034  Score=45.01  Aligned_cols=35  Identities=26%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .+++++|||+|-+|--+|..|.++|.+|+++.|..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            36899999999999999999999999999999863

>d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.73  E-value=0.041  Score=51.51  Aligned_cols=41  Identities=17%  Similarity=0.178  Sum_probs=34.9

Q ss_pred             CceEEEEccc---hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          303 GRMFVLAGAG---GAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       303 ~k~vlViGaG---G~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      +|.+||.|+|   |+|++++.+|++.|++|.|..|.........
T Consensus         2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~   45 (329)
T d1uh5a_           2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMK   45 (329)
T ss_dssp             CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHH
T ss_pred             CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhH
Confidence            5789999976   9999999999999999999998876554443

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.66  E-value=0.045  Score=47.45  Aligned_cols=39  Identities=21%  Similarity=0.240  Sum_probs=35.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLA  343 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la  343 (454)
                      ++.|+|+|-.|.+++..|++.|.+|+.++.+.++.+.+-
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln   40 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLIN   40 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhc
Confidence            588999999999999999999999999999998887764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.58  E-value=0.027  Score=50.12  Aligned_cols=32  Identities=25%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~  336 (454)
                      +|+|||+|-+|.++|..|++.|. +|+|+.|..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            69999999999999999999997 999999865

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.57  E-value=0.028  Score=44.19  Aligned_cols=34  Identities=24%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++++|+|+|-+|--+|..|+++|++|+++.|..
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~   54 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARE   54 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeeec
Confidence            4799999999999999999999999999998853

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=93.52  E-value=0.052  Score=45.03  Aligned_cols=74  Identities=11%  Similarity=0.080  Sum_probs=48.7

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCC---------eEEEEeCCHHHHHHHHHHhcCCcc-------ccccccccCCCCccE
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGA---------RVVIFDIDFERAKSLASDVMGAAR-------PFEDILNFQPEKGAI  366 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~---------~v~i~nRt~~~a~~la~~~~~~~~-------~~~~l~~~~~~~~di  366 (454)
                      -+|.|+|| |..|.++++.|+..+.         ++...+++.++++.++.++.....       ...+..+ ...++|+
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~adv   83 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKV-AFKDADY   83 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHH-HTTTCSE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhh-hcccccE
Confidence            37999997 9999999999987552         234456677777777766543211       0111222 4678999


Q ss_pred             EEECCCCCCCCC
Q 012866          367 LANATPLGMHPN  378 (454)
Q Consensus       367 vInat~~g~~p~  378 (454)
                      ||.+......|.
T Consensus        84 ViitaG~~~~pg   95 (154)
T d1y7ta1          84 ALLVGAAPRKAG   95 (154)
T ss_dssp             EEECCCCCCCTT
T ss_pred             EEeecCcCCCCC
Confidence            999886554443

>d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.52  E-value=0.07  Score=48.82  Aligned_cols=72  Identities=18%  Similarity=0.224  Sum_probs=42.4

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCe---EEEEeCCHHHHH---HHHHHhcC---Cc----ccccc---c----cccCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGAR---VVIFDIDFERAK---SLASDVMG---AA----RPFED---I----LNFQPE  362 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~---v~i~nRt~~~a~---~la~~~~~---~~----~~~~~---l----~~~~~~  362 (454)
                      |-|||.|+ +|+|++++..|++.|++   |.+..|+.++.+   +.++.+..   ..    +++.+   +    ....-.
T Consensus         3 kVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~g   82 (285)
T d1jtva_           3 TVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLETLQLDVRDSKSVAAARERVTEG   82 (285)
T ss_dssp             EEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGGTHHHHHHHHHTTCCTTSEEEEECCTTCHHHHHHHHHTCTTS
T ss_pred             CEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhhhHHHHHHHHHHhccCCceEEEeccccchHhhhhhhhhcccc
Confidence            34556686 59999999999999985   445566655444   34444432   11    12211   1    111124


Q ss_pred             CccEEEECCCCCC
Q 012866          363 KGAILANATPLGM  375 (454)
Q Consensus       363 ~~divInat~~g~  375 (454)
                      ..|++||+...+.
T Consensus        83 ~idilvnnag~~~   95 (285)
T d1jtva_          83 RVDVLVCNAGLGL   95 (285)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             chhhhhhcccccc
Confidence            5799999886554

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=93.41  E-value=0.029  Score=51.28  Aligned_cols=31  Identities=32%  Similarity=0.440  Sum_probs=28.9

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +|+|||+|-+|.++|+.|++.|. +|+|+.|+
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            59999999999999999999997 79999886

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.34  E-value=0.041  Score=43.79  Aligned_cols=33  Identities=15%  Similarity=-0.032  Sum_probs=30.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .++++|||+|-+|--+|..|.++|.+|+|+.|+
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            368999999999999999999999999999886

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.032  Score=51.53  Aligned_cols=69  Identities=12%  Similarity=0.068  Sum_probs=42.0

Q ss_pred             ceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCH-HHHHHHHHHhcCCcccc---ccccccCCCCccEEEECCCC
Q 012866          304 RMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDF-ERAKSLASDVMGAARPF---EDILNFQPEKGAILANATPL  373 (454)
Q Consensus       304 k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~-~~a~~la~~~~~~~~~~---~~l~~~~~~~~divInat~~  373 (454)
                      |+|||.|+. -.|+.++..|.+.|.+|+.++|.. .+.+.+-........++   +.+.. ...++|+||++...
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~~~d~VihlAa~   75 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEP-LYIEVDQIYHLASP   75 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSC-CCCCCSEEEECCSC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHH-HHcCCCEEEECccc
Confidence            789999975 579999999999999998887632 11111111111111111   12222 34578999997654

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.27  E-value=0.023  Score=45.07  Aligned_cols=106  Identities=18%  Similarity=0.232  Sum_probs=66.4

Q ss_pred             ceEEEEccc----hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCC-ccccccccccCCCCccEEEECCCCCCCCC
Q 012866          304 RMFVLAGAG----GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGA-ARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       304 k~vlViGaG----G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~-~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      |++.|+|++    -.|..+...|.+.|++|+-+|.+.+..      +|.. +.+++++    ....|+++-++|....++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~i------~G~~~y~sl~~l----p~~~D~vvi~vp~~~~~~   71 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEI------EGLKCYRSVREL----PKDVDVIVFVVPPKVGLQ   71 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEE------TTEECBSSGGGS----CTTCCEEEECSCHHHHHH
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEccccccc------cCccccccchhc----cccceEEEEEeCHHHHHH
Confidence            679999975    568999999999999999999764321      1211 1234444    345799998888643321


Q ss_pred             CCCCCCChhcccCC--cEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866          379 TDRVPVSEETLRDY--QLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       379 ~~~~~i~~~~l~~~--~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                           +-.++...+  .+++.  -.-....+.+.|++.|.+++.+--|++
T Consensus        72 -----~l~~~~~~g~k~v~~~--~g~~~~~~~~~a~~~gi~vigpnC~~v  114 (116)
T d1y81a1          72 -----VAKEAVEAGFKKLWFQ--PGAESEEIRRFLEKAGVEYSFGRCIMV  114 (116)
T ss_dssp             -----HHHHHHHTTCCEEEEC--TTSCCHHHHHHHHHHTCEEECSCCHHH
T ss_pred             -----HHHHHHhcCCceEEec--cchhhHHHHHHHHHcCCEEEcCCCCCE
Confidence                 112222222  22221  122356788999999999887755554

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=93.22  E-value=0.033  Score=51.94  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=29.9

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC--eEEEEeCCH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA--RVVIFDIDF  336 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~--~v~i~nRt~  336 (454)
                      |+|+|||||-+|.++|.+|++.|.  +|+|+.|+.
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            789999999999999999998774  899999985

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=93.21  E-value=0.02  Score=53.55  Aligned_cols=38  Identities=21%  Similarity=0.288  Sum_probs=33.2

Q ss_pred             CCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          301 LAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       301 ~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ++||+|||+|+ |-.|+.++..|.+.|.+|.+++|+..+
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~   44 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPT   44 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            47899999996 568999999999999999999996543

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=93.12  E-value=0.081  Score=46.62  Aligned_cols=94  Identities=17%  Similarity=0.157  Sum_probs=58.8

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC----HHH--------HHHHHHHhcCCccccccccccCCCCcc
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID----FER--------AKSLASDVMGAARPFEDILNFQPEKGA  365 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt----~~~--------a~~la~~~~~~~~~~~~l~~~~~~~~d  365 (454)
                      .++++.+++++|||.+|-.++..|.+.|. ++++++|.    .++        -+.+++.... .....++.+ .+..++
T Consensus        22 ~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~-~~~~~~l~~-~l~g~~   99 (222)
T d1vl6a1          22 KKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNP-ERLSGDLET-ALEGAD   99 (222)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCT-TCCCSCHHH-HHTTCS
T ss_pred             CChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcc-hhhhcchHh-hccCcc
Confidence            56889999999999999999999999999 99999985    111        1122221111 111223333 345678


Q ss_pred             EEEECCCCCCCCCCCCCCCChhc---ccCCcEEEEEecCCC
Q 012866          366 ILANATPLGMHPNTDRVPVSEET---LRDYQLVFDAVYTPR  403 (454)
Q Consensus       366 ivInat~~g~~p~~~~~~i~~~~---l~~~~~v~D~~y~P~  403 (454)
                      +++.++..|.        +.++.   ..+..++|=++ ||.
T Consensus       100 ~~~g~~~~~~--------~~~e~m~~~~~rPIIFpLS-NPt  131 (222)
T d1vl6a1         100 FFIGVSRGNI--------LKPEWIKKMSRKPVIFALA-NPV  131 (222)
T ss_dssp             EEEECSCSSC--------SCHHHHTTSCSSCEEEECC-SSS
T ss_pred             eecccccccc--------ccHHHHhhcCCCCEEEecC-CCc
Confidence            8887765432        33332   23567888876 443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.05  E-value=0.027  Score=51.01  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      .+|+|||+|.+|.++|..|++.|.+|.|+.|.++
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3699999999999999999999999999999753

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.99  E-value=0.088  Score=43.99  Aligned_cols=68  Identities=15%  Similarity=0.078  Sum_probs=41.2

Q ss_pred             eEEEEccchhHHHHHHH--HHH---CCC-eEEEEeCCHHHHHHHHHHhcC---Cc----cccccccccCCCCccEEEECC
Q 012866          305 MFVLAGAGGAGRALAFG--AKS---RGA-RVVIFDIDFERAKSLASDVMG---AA----RPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       305 ~vlViGaGG~arai~~~--L~~---~G~-~v~i~nRt~~~a~~la~~~~~---~~----~~~~~l~~~~~~~~divInat  371 (454)
                      |+.|||||..+.+.++.  +..   ... +|.+++.+.++++...+....   ..    .+. +..+ .++++|+||+|.
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~-~~~~-~l~~aDvVVita   79 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISD-TFEG-AVVDAKYVIFQF   79 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECS-SHHH-HHTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEec-Cccc-ccCCCCEEEEec
Confidence            58999999555444433  322   224 899999999998765432211   11    111 1222 357899999987


Q ss_pred             CCC
Q 012866          372 PLG  374 (454)
Q Consensus       372 ~~g  374 (454)
                      ..+
T Consensus        80 ~~~   82 (162)
T d1up7a1          80 RPG   82 (162)
T ss_dssp             CTT
T ss_pred             ccC
Confidence            654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=92.97  E-value=0.055  Score=42.55  Aligned_cols=35  Identities=17%  Similarity=0.195  Sum_probs=32.3

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .+++++|+|+|-+|--+|..|+.+|.+|+++.|.+
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            47899999999999999999999999999999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.91  E-value=0.026  Score=49.43  Aligned_cols=33  Identities=12%  Similarity=0.082  Sum_probs=29.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCC-------CeEEEEeCCH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRG-------ARVVIFDIDF  336 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G-------~~v~i~nRt~  336 (454)
                      .+|+|||+|.+|.++|+.|.++|       ++|+|+.+.+
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~   42 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLP   42 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCC
Confidence            58999999999999999999887       4799999864

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.88  E-value=0.033  Score=44.42  Aligned_cols=34  Identities=21%  Similarity=0.261  Sum_probs=31.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++++|||+|-.|--+|..|.++|++|+|+.|..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4799999999999999999999999999999864

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=92.85  E-value=0.032  Score=43.30  Aligned_cols=37  Identities=8%  Similarity=0.126  Sum_probs=31.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      ..++||+|+|+|+|.+|.-++..|+..+.++++..|.
T Consensus        28 ~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          28 ELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             GGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             hhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            4688999999999999999999998877776655554

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=92.82  E-value=0.051  Score=43.37  Aligned_cols=104  Identities=12%  Similarity=0.069  Sum_probs=63.0

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCc-----cccccccccCCCCccEEEECCCCCCCCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAA-----RPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~-----~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      |.++|+|.|..|+.++..|.  |.+|.++..++++.+.+... +..+     .+-+.|.+..+.+++.+|-+|+-..   
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~~~~~~~~~-~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~---   74 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLAEDENVRKKVLRS-GANFVHGDPTRVSDLEKANVRGARAVIVNLESDS---   74 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEESCTTHHHHHHHT-TCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH---
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEEcchHHHHHHHhc-CccccccccCCHHHHHHhhhhcCcEEEEeccchh---
Confidence            46899999999999999984  45788899999998877543 3322     1222344435778999998775311   


Q ss_pred             CCCCCCC--hhcccCCcEEEEEecCCCCCHHHHHHHHCCCc
Q 012866          379 TDRVPVS--EETLRDYQLVFDAVYTPRKTRLLKDAEAAGAI  417 (454)
Q Consensus       379 ~~~~~i~--~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~  417 (454)
                       ....+.  ...+.+..-++=.+.+|...+.++   +.|+.
T Consensus        75 -~n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~---~~G~d  111 (129)
T d2fy8a1          75 -ETIHCILGIRKIDESVRIIAEAERYENIEQLR---MAGAD  111 (129)
T ss_dssp             -HHHHHHHHHHHHCSSSCEEEECSSGGGHHHHH---HHHCS
T ss_pred             -hhHHHHHHHHHHCCCceEEEEEcCHHHHHHHH---HCCCC
Confidence             000000  011334434555555676665554   45664

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.58  E-value=0.07  Score=45.00  Aligned_cols=72  Identities=10%  Similarity=-0.023  Sum_probs=42.7

Q ss_pred             ceEEEEccc--hhHHHHHHHHHHC---CC-eEEEEeCCHHH--HHHHHH-------HhcCCc--cccccccccCCCCccE
Q 012866          304 RMFVLAGAG--GAGRALAFGAKSR---GA-RVVIFDIDFER--AKSLAS-------DVMGAA--RPFEDILNFQPEKGAI  366 (454)
Q Consensus       304 k~vlViGaG--G~arai~~~L~~~---G~-~v~i~nRt~~~--a~~la~-------~~~~~~--~~~~~l~~~~~~~~di  366 (454)
                      -|+.|||||  |.+.+++.-+...   .. +|+++++++++  ++.+-.       .++...  ....+..+ .++++|+
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~-al~gaDv   80 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRR-ALDGADF   80 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH-HHTTCSE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchh-hcCCCCE
Confidence            368999999  5556665555543   23 89999998754  443321       111111  11122222 3568999


Q ss_pred             EEECCCCCCC
Q 012866          367 LANATPLGMH  376 (454)
Q Consensus       367 vInat~~g~~  376 (454)
                      ||+|..++-.
T Consensus        81 Vv~ta~~~~~   90 (169)
T d1s6ya1          81 VTTQFRVGGL   90 (169)
T ss_dssp             EEECCCTTHH
T ss_pred             EEEccccCCC
Confidence            9999987643

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=92.48  E-value=0.049  Score=50.84  Aligned_cols=38  Identities=21%  Similarity=0.212  Sum_probs=33.3

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCHHHH
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDFERA  339 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~~~a  339 (454)
                      +.|+|+|+|+ |..|++++..|.+.|.+|+++.|+.++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~   40 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL   40 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchh
Confidence            3689999995 8899999999999999999999986643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=92.40  E-value=0.051  Score=48.44  Aligned_cols=39  Identities=26%  Similarity=0.321  Sum_probs=33.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFERAKSL  342 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~~a~~l  342 (454)
                      ..|+|||+|.+|..+|..|++.|.+|.|+.++..-..++
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~   43 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKI   43 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCce
Confidence            459999999999999999999999999999986544443

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=92.37  E-value=0.043  Score=50.71  Aligned_cols=34  Identities=18%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +.-.|+|||||-+|.+++..|++.|.+++|+.++
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~   39 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETA   39 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcC
Confidence            4567999999999999999999999999999875

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=92.31  E-value=0.071  Score=43.27  Aligned_cols=112  Identities=19%  Similarity=0.177  Sum_probs=67.3

Q ss_pred             CceEEEEccc----hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          303 GRMFVLAGAG----GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       303 ~k~vlViGaG----G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      -|++.|+||.    -.|..++..|.+.|++++++|-+... +++   .+..  .+..+.+ .....|+++-++|....++
T Consensus        13 pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~-~~i---~g~~--~~~~l~~-i~~~iD~v~v~~p~~~v~~   85 (136)
T d1iuka_          13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQG-EEL---FGEE--AVASLLD-LKEPVDILDVFRPPSALMD   85 (136)
T ss_dssp             CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTT-SEE---TTEE--CBSSGGG-CCSCCSEEEECSCHHHHTT
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEecccc-cee---ecee--cccchhh-ccCCCceEEEeccHHHHHH
Confidence            4789999985    67999999999999999999876421 100   1111  1223333 2345799999998644332


Q ss_pred             CCCCCCChhcc--cCCcEEEEEecCCCCCHHHHHHHHCCCceecc-HHHHHHH
Q 012866          379 TDRVPVSEETL--RDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSG-VEMFLRQ  428 (454)
Q Consensus       379 ~~~~~i~~~~l--~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~G-l~mlv~Q  428 (454)
                           +-.++.  ....+++  .-.=.+-.+.+.|++.|+.++.+ --|..+|
T Consensus        86 -----~v~~~~~~g~k~i~~--q~G~~~~e~~~~a~~~Gi~vV~~~C~~ie~~  131 (136)
T d1iuka_          86 -----HLPEVLALRPGLVWL--QSGIRHPEFEKALKEAGIPVVADRCLMVEHK  131 (136)
T ss_dssp             -----THHHHHHHCCSCEEE--CTTCCCHHHHHHHHHTTCCEEESCCHHHHHH
T ss_pred             -----HHHHHHhhCCCeEEE--ecCccCHHHHHHHHHcCCEEEcCCccHHHHH
Confidence                 112222  1222222  11122456889999999998766 4444454

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=92.29  E-value=0.035  Score=47.26  Aligned_cols=34  Identities=21%  Similarity=0.194  Sum_probs=30.3

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      ++++|+|||+|.+|..+|..|++.|.+++|+.|.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~   37 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM   37 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee
Confidence            4678999999999999999999999999988653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.057  Score=49.31  Aligned_cols=30  Identities=30%  Similarity=0.395  Sum_probs=28.4

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          306 FVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       306 vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      |+|||||-+|.++|+.|++.|.+|+|+.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~   31 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEAR   31 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence            799999999999999999999999999875

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.20  E-value=0.055  Score=48.63  Aligned_cols=31  Identities=23%  Similarity=0.448  Sum_probs=29.1

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .|+|||+|-+|.++|+.|++.|.+|+|+.|.
T Consensus         5 DvvIIGaGi~Gls~A~~La~~G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQGVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4899999999999999999999999999875

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.12  E-value=0.058  Score=47.50  Aligned_cols=32  Identities=31%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .|+|||+|.+|..+|..|++.|.+|.|+.+..
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            48999999999999999999999999999864

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.09  E-value=0.11  Score=43.06  Aligned_cols=35  Identities=26%  Similarity=0.213  Sum_probs=30.8

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      ..+++|+|||+|.+|--.|..+.++|+ +|+++.|.
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr   78 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK   78 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeC
Confidence            346789999999999999999999999 79888875

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.00  E-value=0.051  Score=47.52  Aligned_cols=32  Identities=25%  Similarity=0.291  Sum_probs=28.6

Q ss_pred             eEEEEccchhHHHHHHHHHHC--CCeEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~--G~~v~i~nRt~  336 (454)
                      +|+|||+|.+|.++|..|.+.  |++|+|+.+.+
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~   36 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQL   36 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            799999999999999999765  66999999875

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=91.95  E-value=0.048  Score=50.20  Aligned_cols=31  Identities=19%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .++|||||-+|.++|+.|++.|.+|+|+.++
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~   33 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKR   33 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECC
Confidence            5899999999999999999999999999987

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.88  E-value=0.064  Score=42.86  Aligned_cols=45  Identities=13%  Similarity=0.154  Sum_probs=36.8

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH--------HHHHHHHHHhc
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF--------ERAKSLASDVM  347 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~--------~~a~~la~~~~  347 (454)
                      .++++|+|+|-.|--+|..+..+|.+|+|+.|..        +-++.+.+.+.
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~   78 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNE   78 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHG
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHH
Confidence            4799999999999999999999999999998854        44555555553

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.79  E-value=0.067  Score=48.27  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=30.3

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .+||||+|+ |-.|+.++.+|.+.|.+|+++.|+.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            467999996 7899999999999999999999964

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=91.73  E-value=0.086  Score=45.67  Aligned_cols=37  Identities=16%  Similarity=0.337  Sum_probs=32.7

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      ..++||+|+|||+|-+|--+++.+++.+.+++++-|+
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            4689999999999999999999999999877777665

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.54  E-value=0.17  Score=41.66  Aligned_cols=74  Identities=11%  Similarity=0.090  Sum_probs=46.4

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCC-------eEEEEeCC--HHHHHHHHHHhcCCc------ccc-ccccccCCCCccE
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGA-------RVVIFDID--FERAKSLASDVMGAA------RPF-EDILNFQPEKGAI  366 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~-------~v~i~nRt--~~~a~~la~~~~~~~------~~~-~~l~~~~~~~~di  366 (454)
                      -||.|+|| |..|.++++.|+..+.       ++.+++..  .++++.++-++....      ... .+..+ ...++|+
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dv   82 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEI-AFKDLDV   82 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHH-HTTTCSE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCccccc-ccCCceE
Confidence            37999996 9999999999986432       57777654  456666654432111      011 11222 3578999


Q ss_pred             EEECCCCCCCCC
Q 012866          367 LANATPLGMHPN  378 (454)
Q Consensus       367 vInat~~g~~p~  378 (454)
                      ||.+......|.
T Consensus        83 VVitag~~~~~g   94 (154)
T d5mdha1          83 AILVGSMPRRDG   94 (154)
T ss_dssp             EEECCSCCCCTT
T ss_pred             EEEecccCCCCC
Confidence            998876544443

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.22  E-value=0.059  Score=45.92  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDI  334 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nR  334 (454)
                      +.++|+|||+|.+|..+|..|++.|.+++|+.+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~   36 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEG   36 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECC
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEe
Confidence            357899999999999999999999998888764

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.21  E-value=0.086  Score=47.06  Aligned_cols=34  Identities=24%  Similarity=0.271  Sum_probs=30.6

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .|||||+|| |-.|++++.+|.+.|.+|+++.|+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            578999996 7889999999999999999999864

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.97  E-value=0.14  Score=44.66  Aligned_cols=37  Identities=30%  Similarity=0.320  Sum_probs=31.6

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHH--------------------HCCC-eEEEEeCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAK--------------------SRGA-RVVIFDID  335 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~--------------------~~G~-~v~i~nRt  335 (454)
                      ..+.+++|+|||.|.+|.-+|..|.                    +.|+ +|+++.|.
T Consensus        35 ~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          35 PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             ccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            4467899999999999999988766                    6788 89999985

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.17  Score=39.42  Aligned_cols=36  Identities=25%  Similarity=0.408  Sum_probs=32.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCHH
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDFE  337 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~~  337 (454)
                      ...++.|||+|-.||-++.+..++|+++.+++.+.+
T Consensus        10 ~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          10 AATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             TCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            356899999999999999999999999999998754

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.94  E-value=0.13  Score=45.14  Aligned_cols=38  Identities=18%  Similarity=0.060  Sum_probs=33.1

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHHH--------------------CCC-eEEEEeCCH
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAKS--------------------RGA-RVVIFDIDF  336 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~~--------------------~G~-~v~i~nRt~  336 (454)
                      .++.+++|+|||+|.+|.-+|..|.+                    .|+ +|+++.|..
T Consensus        35 ~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg   93 (225)
T d1cjca1          35 PDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRG   93 (225)
T ss_dssp             CCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSC
T ss_pred             ccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcC
Confidence            45679999999999999999998876                    588 999999864

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.76  E-value=0.073  Score=44.38  Aligned_cols=31  Identities=32%  Similarity=0.384  Sum_probs=26.6

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEe
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFD  333 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~n  333 (454)
                      +++|+|||+|.+|--++..|.++|.+++|+-
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~   33 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRL   33 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEE
Confidence            5789999999999999999999998554443

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.53  E-value=0.057  Score=44.10  Aligned_cols=110  Identities=18%  Similarity=0.166  Sum_probs=65.4

Q ss_pred             CceEEEEccc----hhHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCCCCCC
Q 012866          303 GRMFVLAGAG----GAGRALAFGAKSRGARVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLGMHPN  378 (454)
Q Consensus       303 ~k~vlViGaG----G~arai~~~L~~~G~~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g~~p~  378 (454)
                      -|++.|+|+.    ..|..++..|.+.|++|+.+|.+.+.      -.|..  .+..+.+ .....|+++-++|....+.
T Consensus        19 ~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~~------i~G~~--~~~sl~d-lp~~iD~v~i~vp~~~~~~   89 (139)
T d2d59a1          19 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYEE------VLGRK--CYPSVLD-IPDKIEVVDLFVKPKLTME   89 (139)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE------ETTEE--CBSSGGG-CSSCCSEEEECSCHHHHHH
T ss_pred             CCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCcccc------cCCCc--ccccccc-cCccceEEEEEeCHHHHHH
Confidence            4789999975    57999999999999999999986321      11111  1233333 2345799988887543221


Q ss_pred             CCCCCCChhcccCCcEEEEEecCCCCCHHHHHHHHCCCceeccHHHHH
Q 012866          379 TDRVPVSEETLRDYQLVFDAVYTPRKTRLLKDAEAAGAIIVSGVEMFL  426 (454)
Q Consensus       379 ~~~~~i~~~~l~~~~~v~D~~y~P~~T~ll~~A~~~G~~~~~Gl~mlv  426 (454)
                           +-++++..+.-++=+...-......+.|+++|+.++..--|++
T Consensus        90 -----~~~e~~~~g~k~v~~~~G~~~ee~~~~a~~~gi~vig~~C~~v  132 (139)
T d2d59a1          90 -----YVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIVANRCMMR  132 (139)
T ss_dssp             -----HHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEEEESCCHHH
T ss_pred             -----HHHHHHHhCCCEEEEeccccCHHHHHHHHHCCCEEEcCCcChh
Confidence                 2222322221111122222245677899999998776533443

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=90.44  E-value=0.1  Score=47.49  Aligned_cols=32  Identities=34%  Similarity=0.614  Sum_probs=29.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      -.|+|||+|.+|.++|..|++.|.+|.|+.+.
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            46999999999999999999999999999875

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.34  E-value=0.4  Score=40.34  Aligned_cols=74  Identities=15%  Similarity=0.039  Sum_probs=46.8

Q ss_pred             CceEEEEcc-chhHHHHHHHHHHC---CC----eEEEEeCCH--HHHHHHHHHhcCCcc-------ccccccccCCCCcc
Q 012866          303 GRMFVLAGA-GGAGRALAFGAKSR---GA----RVVIFDIDF--ERAKSLASDVMGAAR-------PFEDILNFQPEKGA  365 (454)
Q Consensus       303 ~k~vlViGa-GG~arai~~~L~~~---G~----~v~i~nRt~--~~a~~la~~~~~~~~-------~~~~l~~~~~~~~d  365 (454)
                      .-+|.|+|| |..|.++++.|++.   |.    .+.+++...  +.++.++-++.....       ...+..+ ...++|
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~-~~~~aD  102 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYE-VFEDVD  102 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHH-HTTTCS
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchh-hccCCc
Confidence            357999996 99999999999863   32    566777654  456666655433211       1122222 357899


Q ss_pred             EEEECCCCCCCC
Q 012866          366 ILANATPLGMHP  377 (454)
Q Consensus       366 ivInat~~g~~p  377 (454)
                      +||-+......|
T Consensus       103 vVvi~ag~~rkp  114 (175)
T d7mdha1         103 WALLIGAKPRGP  114 (175)
T ss_dssp             EEEECCCCCCCT
T ss_pred             eEEEeeccCCCC
Confidence            999877543333

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=90.14  E-value=0.12  Score=44.45  Aligned_cols=31  Identities=19%  Similarity=0.341  Sum_probs=29.0

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .++|||+|.+|.+++..++++|.+|.|+.+.
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            4899999999999999999999999999885

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.12  E-value=0.1  Score=44.80  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      -.++|||+|.+|.++|..++++|.+|+|+.+.
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            35899999999999999999999999999875

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.95  E-value=0.15  Score=44.45  Aligned_cols=72  Identities=14%  Similarity=0.001  Sum_probs=51.1

Q ss_pred             CCC-ceEEEEccchhHHHHHHHHHH------CCCeEEEEeCCHHHHHHHHHHhcCCccc--cccccccCCCCccEEEECC
Q 012866          301 LAG-RMFVLAGAGGAGRALAFGAKS------RGARVVIFDIDFERAKSLASDVMGAARP--FEDILNFQPEKGAILANAT  371 (454)
Q Consensus       301 ~~~-k~vlViGaGG~arai~~~L~~------~G~~v~i~nRt~~~a~~la~~~~~~~~~--~~~l~~~~~~~~divInat  371 (454)
                      ++| |++.|||-|-=|+|=+..|.+      .|++|.|--|..++..+.|+.-|....+  +-+..+ ..+.+|+|...+
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~E-Av~~ADiVmiLl  119 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWE-TISGSDLVLLLI  119 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHH-HHHTCSEEEECS
T ss_pred             hcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHH-HHhhCCEEEEec
Confidence            456 899999999999999999998      4567888888776666666665544221  122223 345689999888


Q ss_pred             CC
Q 012866          372 PL  373 (454)
Q Consensus       372 ~~  373 (454)
                      |-
T Consensus       120 PD  121 (226)
T d1qmga2         120 SD  121 (226)
T ss_dssp             CH
T ss_pred             ch
Confidence            74

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.86  E-value=0.084  Score=45.44  Aligned_cols=66  Identities=17%  Similarity=0.097  Sum_probs=40.6

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCC--eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGA--RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~--~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      |++||+|| |-.|+.++..|.+.|.  +|...+|++....   ..+.....++.++.+......|.+|++..
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~---~~~~~~~~d~~~~~~~~~~~~d~vi~~~g   71 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEH---PRLDNPVGPLAELLPQLDGSIDTAFCCLG   71 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCC---TTEECCBSCHHHHGGGCCSCCSEEEECCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhc---ccccccccchhhhhhccccchheeeeeee
Confidence            79999997 8889999999999996  6777777642200   00111111222222212345788888764

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.85  E-value=0.65  Score=38.33  Aligned_cols=74  Identities=20%  Similarity=0.280  Sum_probs=47.3

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCC----HHH----HHHHHHHhcCCccccccccccCCCCccEEEECC
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDID----FER----AKSLASDVMGAARPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt----~~~----a~~la~~~~~~~~~~~~l~~~~~~~~divInat  371 (454)
                      ++|++++++|-| .++++.+.+|...|++++++...    .+.    +++.+...+....-..+..+ .+.++|+|.-.+
T Consensus         2 l~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e-a~~~adviy~~~   80 (163)
T d1pvva2           2 IKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVK-AVKDADVIYTDV   80 (163)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHH-HTTTCSEEEECC
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHH-HhhhccEEeecc
Confidence            678999999976 78899999999999999999753    122    22222222222111223333 467899888655


Q ss_pred             CCCC
Q 012866          372 PLGM  375 (454)
Q Consensus       372 ~~g~  375 (454)
                      =..|
T Consensus        81 ~~~~   84 (163)
T d1pvva2          81 WASM   84 (163)
T ss_dssp             CCCS
T ss_pred             eeec
Confidence            3333

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.68  E-value=0.15  Score=44.00  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=29.2

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      -.|+|||+|.+|..+|..++++|.+|.|+.+.
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~   37 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKR   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            35899999999999999999999999999864

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=89.56  E-value=0.16  Score=46.67  Aligned_cols=34  Identities=32%  Similarity=0.506  Sum_probs=30.6

Q ss_pred             CCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +...|+|||+|.+|.+++..+++.|.+|.|+.+.
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~   51 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKA   51 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            3457999999999999999999999999999875

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.43  E-value=0.34  Score=39.97  Aligned_cols=74  Identities=14%  Similarity=0.189  Sum_probs=49.9

Q ss_pred             CCCceEEEEcc--chhHHHHHHHHHHCCCeEEEEeCCH--------HHHHHHHHHhcCCccccccccccCCCCccEEEEC
Q 012866          301 LAGRMFVLAGA--GGAGRALAFGAKSRGARVVIFDIDF--------ERAKSLASDVMGAARPFEDILNFQPEKGAILANA  370 (454)
Q Consensus       301 ~~~k~vlViGa--GG~arai~~~L~~~G~~v~i~nRt~--------~~a~~la~~~~~~~~~~~~l~~~~~~~~divIna  370 (454)
                      ++|++++++|=  ..++++.+.++...|++++++....        +.+++.+...+....-.+++.+ .++++|+|...
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~-ai~~aDviyt~   79 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEE-ALAGADVVYTD   79 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHH-HHTTCSEEEEC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHH-hhhhhhheecc
Confidence            46899999994  5799999999999999999998642        2334444444443322334444 46789999876


Q ss_pred             CCCCC
Q 012866          371 TPLGM  375 (454)
Q Consensus       371 t~~g~  375 (454)
                      +-..|
T Consensus        80 ~~q~~   84 (161)
T d1vlva2          80 VWASM   84 (161)
T ss_dssp             CCC--
T ss_pred             ceeee
Confidence            64443

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=89.33  E-value=0.23  Score=39.24  Aligned_cols=37  Identities=11%  Similarity=0.235  Sum_probs=30.3

Q ss_pred             CCceEEEEccch-----------hHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          302 AGRMFVLAGAGG-----------AGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       302 ~~k~vlViGaGG-----------~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      ..|+|||||+|+           ++--++.+|++.|+++.++|-+++.
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            357999999983           4556788899999999999988765

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=89.33  E-value=0.17  Score=44.05  Aligned_cols=33  Identities=30%  Similarity=0.398  Sum_probs=29.9

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      -.++|||+|.+|.+++..+++.|.+|.|+.+..
T Consensus         7 yDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           7 YDVVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            358999999999999999999999999998754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=89.09  E-value=0.13  Score=47.35  Aligned_cols=32  Identities=38%  Similarity=0.681  Sum_probs=29.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      ..|+|||+|.+|..+|..|++.|.+|.|+.+.
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~   55 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKE   55 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            45999999999999999999999999999875

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.07  E-value=0.12  Score=37.79  Aligned_cols=33  Identities=24%  Similarity=0.342  Sum_probs=30.4

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      |+|.|+|+|--||-++.+...+|+++.+++.+.
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            689999999999999999999999999998763

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.70  E-value=0.2  Score=42.87  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=29.1

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      ..++|||+|.+|..+|..+++.|.+|.|+.+.
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~   35 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG   35 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecC
Confidence            35899999999999999999999999999875

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.66  E-value=0.46  Score=40.19  Aligned_cols=75  Identities=17%  Similarity=0.148  Sum_probs=52.3

Q ss_pred             CCCCceEEEEccc--hhHHHHHHHHHHCCCeEEEEeCCH--------HHHHHHHHHhcCCccccccccccCCCCccEEEE
Q 012866          300 PLAGRMFVLAGAG--GAGRALAFGAKSRGARVVIFDIDF--------ERAKSLASDVMGAARPFEDILNFQPEKGAILAN  369 (454)
Q Consensus       300 ~~~~k~vlViGaG--G~arai~~~L~~~G~~v~i~nRt~--------~~a~~la~~~~~~~~~~~~l~~~~~~~~divIn  369 (454)
                      +++|-++.++|=|  .++++.+..+..+|++++++....        +.+++++...+....-.+++.+ .++++|+|..
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~e-ai~~aDvVyt   80 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKE-AVKGVDFVHT   80 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHH-HTTTCSEEEE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhh-ccccccEEEe
Confidence            3678899999954  899999999999999999999732        2344445554443322344444 5678999887


Q ss_pred             CCCCCC
Q 012866          370 ATPLGM  375 (454)
Q Consensus       370 at~~g~  375 (454)
                      .+-..|
T Consensus        81 ~~w~~~   86 (185)
T d1dxha2          81 DVWVSM   86 (185)
T ss_dssp             CCCSCS
T ss_pred             ehhhhh
Confidence            665444

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=88.59  E-value=0.19  Score=41.80  Aligned_cols=31  Identities=26%  Similarity=0.382  Sum_probs=28.1

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .|+|||+|.+|-.++..+++.|.++.|+.|.
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            4899999999999999999999999988864

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=88.57  E-value=0.37  Score=41.44  Aligned_cols=72  Identities=26%  Similarity=0.323  Sum_probs=44.2

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCCC
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPLG  374 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~g  374 (454)
                      +++|++||=+|+|--.-+  ..++..|+ +|+-++.+++..+...+......+...++.+ ....+|+||.--|-|
T Consensus        46 dl~Gk~VLDlGcGtG~l~--i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~NPPfg  118 (197)
T d1ne2a_          46 NIGGRSVIDAGTGNGILA--CGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFG  118 (197)
T ss_dssp             SSBTSEEEEETCTTCHHH--HHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-
T ss_pred             CCCCCEEEEeCCCCcHHH--HHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEeCcccc
Confidence            578999999999832223  35667888 8999999976654433322211111223333 235789998766654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=88.39  E-value=0.15  Score=43.94  Aligned_cols=32  Identities=22%  Similarity=0.348  Sum_probs=29.7

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      ..++|||+|.+|..+|..++++|.+|+|+.+.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~   37 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ   37 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecC
Confidence            46899999999999999999999999999875

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.37  E-value=0.17  Score=48.07  Aligned_cols=33  Identities=30%  Similarity=0.360  Sum_probs=29.7

Q ss_pred             ceEEEEccchhHHHHHHHHHH------CCCeEEEEeCCH
Q 012866          304 RMFVLAGAGGAGRALAFGAKS------RGARVVIFDIDF  336 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~------~G~~v~i~nRt~  336 (454)
                      -.|+|||+|.+|.++|+.|++      .|.+|.|+.|..
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~   71 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA   71 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCC
Confidence            369999999999999999997      788999999864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=88.35  E-value=0.15  Score=46.86  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=28.5

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .|+|||+|.+|..+|..+++.|.+|.|+.+.
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~   37 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLI   37 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecC
Confidence            4999999999999999999999999999764

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.25  E-value=0.23  Score=45.06  Aligned_cols=33  Identities=27%  Similarity=0.196  Sum_probs=29.2

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      |+|||.|+ |-.|+.++..|.+.|++|+.++|..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68999996 6699999999999999999888853

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.22  E-value=0.21  Score=39.80  Aligned_cols=37  Identities=19%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             CCceEEEEccch-----------hHHHHHHHHHHCCCeEEEEeCCHHH
Q 012866          302 AGRMFVLAGAGG-----------AGRALAFGAKSRGARVVIFDIDFER  338 (454)
Q Consensus       302 ~~k~vlViGaGG-----------~arai~~~L~~~G~~v~i~nRt~~~  338 (454)
                      +.|+|||||+|+           ++--++.+|++.|+++.++|-+++.
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            458999999984           4566788899999999999988765

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=88.17  E-value=0.16  Score=45.62  Aligned_cols=35  Identities=29%  Similarity=0.416  Sum_probs=30.8

Q ss_pred             CCceEEEEccchhHHHHHHHHHH-CCCeEEEEeCCH
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKS-RGARVVIFDIDF  336 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~-~G~~v~i~nRt~  336 (454)
                      ....|+|||+|.+|.++|+.|++ .|.+|+|+.+.+
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~   67 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV   67 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCC
Confidence            35679999999999999999987 599999999864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=88.10  E-value=0.18  Score=43.12  Aligned_cols=31  Identities=19%  Similarity=0.326  Sum_probs=28.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .++|||+|.+|..+|..+++.|.+|.|+.+.
T Consensus         5 DviIIGgGpAGl~aA~~aar~G~~V~viE~~   35 (229)
T d3lada1           5 DVIVIGAGPGGYVAAIKSAQLGLKTALIEKY   35 (229)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEecc
Confidence            4899999999999999999999999999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=87.79  E-value=0.037  Score=48.27  Aligned_cols=30  Identities=27%  Similarity=0.294  Sum_probs=25.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC------eEEEEeC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA------RVVIFDI  334 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~------~v~i~nR  334 (454)
                      +|+|||||-+|.++|+.|++.|.      ++.++.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~   37 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYAD   37 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEES
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeeccc
Confidence            59999999999999999999885      4666654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=87.79  E-value=0.26  Score=41.67  Aligned_cols=70  Identities=16%  Similarity=0.146  Sum_probs=42.6

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC-eEEEEeC-CHHHHHHHHHHhcCCc-ccccc--------------ccccCCCCccEE
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA-RVVIFDI-DFERAKSLASDVMGAA-RPFED--------------ILNFQPEKGAIL  367 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~-~v~i~nR-t~~~a~~la~~~~~~~-~~~~~--------------l~~~~~~~~div  367 (454)
                      ||.|.|.|.+||.+++++.+.+- +|+-+|. ++..........+... ...+.              +.+ ...++|+|
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~-~~~~vDiV   81 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVED-LIKTSDIV   81 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHH-HHHHCSEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhh-hhhcCCEE
Confidence            68999999999999999998764 7666654 3333323333322211 11111              111 12468999


Q ss_pred             EECCCCCC
Q 012866          368 ANATPLGM  375 (454)
Q Consensus       368 Inat~~g~  375 (454)
                      |.||+.+.
T Consensus        82 iecTG~f~   89 (178)
T d1b7go1          82 VDTTPNGV   89 (178)
T ss_dssp             EECCSTTH
T ss_pred             EECCCCcC
Confidence            99999754

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=87.48  E-value=0.16  Score=44.05  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=28.2

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDI  334 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nR  334 (454)
                      .++|||+|.+|.++|..+++.|.+|.|+.+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~   34 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDF   34 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            589999999999999999999999999984

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.00  E-value=0.33  Score=39.48  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=30.8

Q ss_pred             CCceEEEE--ccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          302 AGRMFVLA--GAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       302 ~~k~vlVi--GaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++.++|+  |+|-+|..+|..|+++|++|+++.|..
T Consensus        38 ~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          38 IGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             CCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            36777777  888999999999999999999999875

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=86.76  E-value=0.44  Score=37.89  Aligned_cols=48  Identities=15%  Similarity=0.274  Sum_probs=34.0

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEE-EEeCCHHHHHHHHHHhcCCccccccccccCCCCccEEEECCCC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVV-IFDIDFERAKSLASDVMGAARPFEDILNFQPEKGAILANATPL  373 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~-i~nRt~~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat~~  373 (454)
                      |+.|.|+ |-||++++..+.+.|.++. .++++.                .+     .+.++|++|+-|..
T Consensus         2 ki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~~----------------~~-----~~~~~DVvIDFS~p   51 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVNG----------------VE-----ELDSPDVVIDFSSP   51 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEEETTE----------------EE-----ECSCCSEEEECSCG
T ss_pred             EEEEECCCCHHHHHHHHHHhcCCCeEEEEECCCc----------------HH-----HhccCCEEEEecCH
Confidence            5899995 9999999998888888543 333321                11     23467999998863

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.47  E-value=0.32  Score=41.54  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=28.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .++|||+|.+|..++..+++.|.+|.|+.+.
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~   35 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESH   35 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            3899999999999999999999999999764

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=86.44  E-value=0.28  Score=45.57  Aligned_cols=30  Identities=17%  Similarity=0.316  Sum_probs=28.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDI  334 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nR  334 (454)
                      .|+|||+|-+|..+|+.|++.|.+|.|+.|
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEec
Confidence            489999999999999999999999999987

>d1vkza2 c.30.1.1 (A:4-93) Glycinamide ribonucleotide synthetase (GAR-syn), N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide synthetase (GAR-syn), N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=86.37  E-value=0.41  Score=35.67  Aligned_cols=32  Identities=19%  Similarity=0.353  Sum_probs=27.8

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      ||||||+||---|+++.|.+...+|+++.-+.
T Consensus         2 kVLviGsGgREHAia~~l~~s~~~v~~~pGN~   33 (90)
T d1vkza2           2 RVHILGSGGREHAIGWAFAKQGYEVHFYPGNA   33 (90)
T ss_dssp             EEEEEECSHHHHHHHHHHHHTTCEEEEEECCT
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCeEEEecCCc
Confidence            69999999999999999998877888875443

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=86.29  E-value=0.32  Score=43.12  Aligned_cols=30  Identities=27%  Similarity=0.450  Sum_probs=28.5

Q ss_pred             EEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          306 FVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       306 vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      ++|||+|.+|..++..++++|.+|.|+.+.
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~   33 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKS   33 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence            799999999999999999999999999875

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.86  E-value=0.29  Score=38.80  Aligned_cols=36  Identities=11%  Similarity=0.092  Sum_probs=31.9

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      +++|+|+|+|.|..|--.|..|.+...+|+++-|..
T Consensus        25 ~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          25 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            589999999999999999999988767999999864

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=85.82  E-value=0.44  Score=40.21  Aligned_cols=71  Identities=8%  Similarity=0.088  Sum_probs=45.7

Q ss_pred             CCceEEEE--ccchhHHHHHHHHHHCCCeEEEEeCCHHHHH---HHHHHhcCCc-cccc-----cc----ccc---CCCC
Q 012866          302 AGRMFVLA--GAGGAGRALAFGAKSRGARVVIFDIDFERAK---SLASDVMGAA-RPFE-----DI----LNF---QPEK  363 (454)
Q Consensus       302 ~~k~vlVi--GaGG~arai~~~L~~~G~~v~i~nRt~~~a~---~la~~~~~~~-~~~~-----~l----~~~---~~~~  363 (454)
                      .|.+++|+  |+|+.|.+++.-.+.+|++|+.+-|+.++.+   +.++++|... ++.+     ++    .+.   ....
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            46789998  5688999999988899998776666554433   3456777543 2211     11    110   1245


Q ss_pred             ccEEEECCC
Q 012866          364 GAILANATP  372 (454)
Q Consensus       364 ~divInat~  372 (454)
                      .|+++|+..
T Consensus       108 vdvv~D~vg  116 (189)
T d1gu7a2         108 AKLALNCVG  116 (189)
T ss_dssp             EEEEEESSC
T ss_pred             ceEEEECCC
Confidence            899999875

>d2ax3a2 c.104.1.1 (A:1-211) Hypothetical protein TM0922, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: YjeF N-terminal domain-like
superfamily: YjeF N-terminal domain-like
family: YjeF N-terminal domain-like
domain: Hypothetical protein TM0922, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.80  E-value=1.7  Score=37.31  Aligned_cols=71  Identities=17%  Similarity=0.178  Sum_probs=39.4

Q ss_pred             CceEE-EEccc---hhHHHHHHHHHHCCCeEEEEeCCHHH------HHHHHHHhcCCccccccccccCCCCccEEEECC-
Q 012866          303 GRMFV-LAGAG---GAGRALAFGAKSRGARVVIFDIDFER------AKSLASDVMGAARPFEDILNFQPEKGAILANAT-  371 (454)
Q Consensus       303 ~k~vl-ViGaG---G~arai~~~L~~~G~~v~i~nRt~~~------a~~la~~~~~~~~~~~~l~~~~~~~~divInat-  371 (454)
                      .++++ +.|.|   |=|-++++.|.+.|++|.++.....+      ..++...++.....  .........+|+||+|. 
T Consensus        40 ~~~vlvl~G~GNNGGDGl~~Ar~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dlIIDal~  117 (211)
T d2ax3a2          40 DYRFLVLCGGGNNGGDGFVVARNLLGVVKDVLVVFLGKKKTPDCEYNYGLYKKFGGKVVE--QFEPSILNEFDVVVDAIF  117 (211)
T ss_dssp             TCEEEEEECSSHHHHHHHHHHHHHTTTSSEEEEEECCSSCCHHHHHHHHHHHHTTCCEES--CCCGGGGGGCSEEEEESC
T ss_pred             CCcEEEEECCCCCchhHHHHHHHHHhcCCeeEEEecCccCCcHHHHHHHHHHHcCCcccc--ccccccccCceEEEEecc
Confidence            44544 45765   66888999999999987776653221      11222333322222  11111234679999987 


Q ss_pred             CCCC
Q 012866          372 PLGM  375 (454)
Q Consensus       372 ~~g~  375 (454)
                      ..|.
T Consensus       118 G~Gl  121 (211)
T d2ax3a2         118 GTGL  121 (211)
T ss_dssp             CTTC
T ss_pred             cCCc
Confidence            4444

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.42  E-value=0.23  Score=45.48  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=30.4

Q ss_pred             CCceEEEEccchhHHHHHHHHHHC--CCeEEEEeCCH
Q 012866          302 AGRMFVLAGAGGAGRALAFGAKSR--GARVVIFDIDF  336 (454)
Q Consensus       302 ~~k~vlViGaGG~arai~~~L~~~--G~~v~i~nRt~  336 (454)
                      .++.|+|||+|.+|.++|+.|++.  |.+|+|+.+..
T Consensus        49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            356799999999999999999964  78999999864

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=85.40  E-value=0.36  Score=40.77  Aligned_cols=31  Identities=6%  Similarity=0.098  Sum_probs=27.7

Q ss_pred             eEEEEccchhHHHHHHHHHHCCC--eEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGA--RVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~--~v~i~nRt  335 (454)
                      ||+|||+|-+|-.+|..|.+++.  +|+++.|.
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            69999999999999999998765  89999875

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.31  E-value=0.62  Score=37.12  Aligned_cols=33  Identities=21%  Similarity=0.276  Sum_probs=27.2

Q ss_pred             CceEEEEccchhHHHHHHHHH----HCCCeEEEEeCC
Q 012866          303 GRMFVLAGAGGAGRALAFGAK----SRGARVVIFDID  335 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~----~~G~~v~i~nRt  335 (454)
                      .++++|+|+|.+|--++..|.    +.|.+|+++.+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~   73 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE   73 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc
Confidence            578999999998888877774    468899998874

>d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: Amyloid beta precursor protein-binding protein 1, APPBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.28  E-value=0.17  Score=50.49  Aligned_cols=35  Identities=20%  Similarity=0.201  Sum_probs=31.5

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCC-eEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGA-RVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~-~v~i~nRt  335 (454)
                      +++.+|+|+|+||.|.-++..|...|+ +++|++.+
T Consensus        23 L~~s~VlvvG~gglG~Ei~knLvl~GVg~itivD~d   58 (529)
T d1yova1          23 LESAHVCLINATATGTEILKNLVLPGIGSFTIIDGN   58 (529)
T ss_dssp             HHHCEEEECCCSHHHHHHHHHHHTTTCSEEEEECCS
T ss_pred             HhCCCEEEECCCHHHHHHHHHHHHhcCCEEEEEcCC
Confidence            456799999999999999999999999 99998754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.11  E-value=0.41  Score=37.04  Aligned_cols=34  Identities=18%  Similarity=0.036  Sum_probs=27.8

Q ss_pred             CceEEEEccchhHHHHHHHHHH---CCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKS---RGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~---~G~~v~i~nRt~  336 (454)
                      .++++|+|+|.+|--+|..|.+   .|.+|+++.|..
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            4799999999999888876554   478999999853

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=84.91  E-value=0.37  Score=38.15  Aligned_cols=37  Identities=16%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             CCCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          300 PLAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       300 ~~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .++||+|+|+|.|..|--.|..|.+...+|+++-|..
T Consensus        27 ~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~   63 (126)
T d1fl2a2          27 LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP   63 (126)
T ss_dssp             GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS
T ss_pred             hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccc
Confidence            4689999999999988888888988755999998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.85  E-value=0.32  Score=39.65  Aligned_cols=30  Identities=27%  Similarity=0.349  Sum_probs=26.4

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      |++|||+|-+|-.++..|.+ +.+|+|+.|.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            79999999999999998864 6699999875

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.50  E-value=0.48  Score=43.14  Aligned_cols=32  Identities=19%  Similarity=0.168  Sum_probs=28.9

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      |++||.|| |-.|+.++..|.+.|++|+.++|.
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~   34 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRR   34 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECC
Confidence            78999996 677999999999999999999884

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.21  E-value=0.29  Score=44.69  Aligned_cols=33  Identities=27%  Similarity=0.204  Sum_probs=28.8

Q ss_pred             ceEEEEccchhHHHHHHHHH-----HCCCeEEEEeCCH
Q 012866          304 RMFVLAGAGGAGRALAFGAK-----SRGARVVIFDIDF  336 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~-----~~G~~v~i~nRt~  336 (454)
                      -.|+|+|+|.+|.++|..|+     +.|.+|+|+.|.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            46999999999999999996     4688999999864

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=84.20  E-value=0.82  Score=38.17  Aligned_cols=71  Identities=20%  Similarity=0.233  Sum_probs=44.3

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCC-eEE-EEeCCHHHHHHHHHHhcCCc-c-ccc--------------cccccCCCCcc
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGA-RVV-IFDIDFERAKSLASDVMGAA-R-PFE--------------DILNFQPEKGA  365 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~-~v~-i~nRt~~~a~~la~~~~~~~-~-~~~--------------~l~~~~~~~~d  365 (454)
                      .|+.|.|.|.+||.+++++.+..- +|+ |.+.++......+.+++... . ..+              ++.+ ...+.|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLND-LLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHH-HHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhh-hhccCC
Confidence            479999999999999999987664 655 44455444333444443211 0 000              1111 234789


Q ss_pred             EEEECCCCCC
Q 012866          366 ILANATPLGM  375 (454)
Q Consensus       366 ivInat~~g~  375 (454)
                      +||.||+...
T Consensus        82 vViEcTG~f~   91 (172)
T d2czca2          82 IIVDATPGGI   91 (172)
T ss_dssp             EEEECCSTTH
T ss_pred             EEEECCCCCC
Confidence            9999998764

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.88  E-value=0.64  Score=38.52  Aligned_cols=75  Identities=19%  Similarity=0.147  Sum_probs=51.1

Q ss_pred             CCCceEEEEccc-hhHHHHHHHHHHCCCeEEEEeCCH--------HHHHHHHHHhcCCccccccccccCCCCccEEEECC
Q 012866          301 LAGRMFVLAGAG-GAGRALAFGAKSRGARVVIFDIDF--------ERAKSLASDVMGAARPFEDILNFQPEKGAILANAT  371 (454)
Q Consensus       301 ~~~k~vlViGaG-G~arai~~~L~~~G~~v~i~nRt~--------~~a~~la~~~~~~~~~~~~l~~~~~~~~divInat  371 (454)
                      ++|++++++|-| .++++.+.++..+|++++++....        +.+++.+.+.+....-.+++.+ .+..+|++...+
T Consensus         2 l~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~-~~~~advi~~~~   80 (170)
T d1otha2           2 LKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLE-AAHGGNVLITDT   80 (170)
T ss_dssp             CTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHH-HHTTCSEEEECC
T ss_pred             CCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHH-HHhhhhheeeec
Confidence            678999999976 677888888888899999988641        2333444444444434455555 467789988776


Q ss_pred             CCCCC
Q 012866          372 PLGMH  376 (454)
Q Consensus       372 ~~g~~  376 (454)
                      -..+.
T Consensus        81 ~~~~~   85 (170)
T d1otha2          81 WISMG   85 (170)
T ss_dssp             SSCTT
T ss_pred             eeccc
Confidence            65543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=83.86  E-value=0.4  Score=44.53  Aligned_cols=31  Identities=19%  Similarity=0.285  Sum_probs=28.6

Q ss_pred             ceEEEEccchhHHHHHHHHHHCCCeEEEEeC
Q 012866          304 RMFVLAGAGGAGRALAFGAKSRGARVVIFDI  334 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~~G~~v~i~nR  334 (454)
                      -.|+|||+|-+|..+|+.|++.|.+|+|+.|
T Consensus         8 ~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           8 VPALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            3599999999999999999999999999987

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=83.71  E-value=0.25  Score=45.62  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=30.3

Q ss_pred             CCCceEEEEccchhHHHHHHHHHHCCCeEEEEeCC
Q 012866          301 LAGRMFVLAGAGGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       301 ~~~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      .+.-.|+|||+|.+|..+|..+++.|.+|+|+.+.
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~   39 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQSGQTCALLSKV   39 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHHTTCCCEEECSS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCC
Confidence            34456999999999999999999999999998764

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=83.25  E-value=0.47  Score=43.59  Aligned_cols=30  Identities=33%  Similarity=0.494  Sum_probs=28.3

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeC
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDI  334 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nR  334 (454)
                      .++|||+|-+|..+|..|++.|.+|.|+.+
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEec
Confidence            589999999999999999999999999986

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.10  E-value=0.085  Score=42.15  Aligned_cols=66  Identities=23%  Similarity=0.204  Sum_probs=38.2

Q ss_pred             ceEEEEccchhHHHHHHHHHH-CCCe-EEEEeCCHHHHHHHHHHh-cCCccccccccccCCCCccEEEECCC
Q 012866          304 RMFVLAGAGGAGRALAFGAKS-RGAR-VVIFDIDFERAKSLASDV-MGAARPFEDILNFQPEKGAILANATP  372 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~-~G~~-v~i~nRt~~~a~~la~~~-~~~~~~~~~l~~~~~~~~divInat~  372 (454)
                      .+|+|+|||.+|++++.++.. .|++ +.+++-++++.-+   .+ |......+++.+......++.+-++|
T Consensus         4 ~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~---~I~Gi~V~~~~~l~~~~~~~i~iai~~i~   72 (126)
T d2dt5a2           4 WGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR---PVRGGVIEHVDLLPQRVPGRIEIALLTVP   72 (126)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC---EETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred             ceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC---EECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence            489999999999999987753 3554 5666766544211   11 11122334444322344566666665

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=82.50  E-value=0.65  Score=40.82  Aligned_cols=32  Identities=28%  Similarity=0.455  Sum_probs=28.0

Q ss_pred             eEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          305 MFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       305 ~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      .|+|||+|-+|-.+|.+++++|+++.++..+.
T Consensus         4 DVIVIGgG~AG~eAA~~aAR~G~ktllit~~~   35 (230)
T d2cula1           4 QVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   35 (230)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEEecc
Confidence            48999999999999999999999887776553

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.36  E-value=0.66  Score=35.84  Aligned_cols=34  Identities=15%  Similarity=-0.017  Sum_probs=28.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHCC---CeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRG---ARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G---~~v~i~nRt~  336 (454)
                      .++++|+|+|.+|--+|..|..+|   .+|+++.|..
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            479999999999999888777655   4799998853

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.30  E-value=0.56  Score=42.89  Aligned_cols=32  Identities=25%  Similarity=0.180  Sum_probs=27.6

Q ss_pred             ceE-EEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 012866          304 RMF-VLAGA-GGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       304 k~v-lViGa-GG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      |+| ||.|+ |-.|+.++..|.+.|++|+.++|.
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~   34 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRR   34 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECC
Confidence            467 99997 458999999999999999988874

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=81.92  E-value=0.41  Score=42.18  Aligned_cols=31  Identities=26%  Similarity=0.476  Sum_probs=28.4

Q ss_pred             eEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 012866          305 MFVLAGA-GGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       305 ~vlViGa-GG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      ||||+|+ |-.|+.++..|.+.|++|+.++|.
T Consensus         3 KIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~   34 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQLKGKNVEVIPTDVQ   34 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHHTTSSEEEEEECTT
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCEEEEeech
Confidence            5999997 888999999999999999999985

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.67  E-value=0.86  Score=41.98  Aligned_cols=37  Identities=24%  Similarity=0.227  Sum_probs=32.0

Q ss_pred             CCCCCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCC
Q 012866          299 SPLAGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDID  335 (454)
Q Consensus       299 ~~~~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt  335 (454)
                      +..++.+|||+|+ |-.|+.++..|.+.|.+|++++|.
T Consensus        11 ~~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~   48 (363)
T d2c5aa1          11 WPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWK   48 (363)
T ss_dssp             CTTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCC
Confidence            4557889999995 778999999999999999998764

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=81.55  E-value=0.12  Score=42.38  Aligned_cols=122  Identities=17%  Similarity=0.150  Sum_probs=64.3

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCC---C-eEEEEeCCHHHHHHHHHHhcCCccccccccc-cCCCCccEEEECCCCCCCC
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRG---A-RVVIFDIDFERAKSLASDVMGAARPFEDILN-FQPEKGAILANATPLGMHP  377 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G---~-~v~i~nRt~~~a~~la~~~~~~~~~~~~l~~-~~~~~~divInat~~g~~p  377 (454)
                      |+|.|+|| |-+|+-++..|.+..   . +++.+.++........  +........++.+ ....+.|+++.|+|.+..-
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~--~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~s~   79 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPS--FGGTTGTLQDAFDLEALKALDIIVTCQGGDYTN   79 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCG--GGTCCCBCEETTCHHHHHTCSEEEECSCHHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeecccccccccc--ccCCceeeecccchhhhhcCcEEEEecCchHHH
Confidence            47999998 666999998776553   2 6776665532211110  1111111111111 0135689999999764211


Q ss_pred             CCCCCCCChhcccCC--cEEEEEecCCC------------CCHHHHHHHHCCCc-eeccHHHHHHHHHHH
Q 012866          378 NTDRVPVSEETLRDY--QLVFDAVYTPR------------KTRLLKDAEAAGAI-IVSGVEMFLRQAIGQ  432 (454)
Q Consensus       378 ~~~~~~i~~~~l~~~--~~v~D~~y~P~------------~T~ll~~A~~~G~~-~~~Gl~mlv~Qa~~~  432 (454)
                           .+.+.....+  .+|+|..-.=+            ....++.++++|++ .+.|..--+.|-+.|
T Consensus        80 -----~~~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~~~~ig~~~~~~~~~~~~  144 (146)
T d1t4ba1          80 -----EIYPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGIRTFVGGAAEPLRRMLRQ  144 (146)
T ss_dssp             -----HHHHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTCCEEEECCCHHHHHHHHH
T ss_pred             -----HhhHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCCceEEeccCcHHHHHHHH
Confidence                 1222223333  47888754322            23457788888887 455555444444443

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.51  E-value=0.7  Score=42.25  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             CCceEEEEcc-chhHHHHHHHHHHCCCeEEEEeC
Q 012866          302 AGRMFVLAGA-GGAGRALAFGAKSRGARVVIFDI  334 (454)
Q Consensus       302 ~~k~vlViGa-GG~arai~~~L~~~G~~v~i~nR  334 (454)
                      ..|++||+|+ |-.|+.++..|.+.|.+|+.++|
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~   48 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDN   48 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            3579999995 77899999999999999988865

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=81.51  E-value=0.74  Score=40.61  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=30.1

Q ss_pred             CceEEEEccchhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          303 GRMFVLAGAGGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       303 ~k~vlViGaGG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      ...++|||+|.+|..++..++++|.+++++.+..
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~   75 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWP   75 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            4469999999999999999999999999998753

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=81.40  E-value=0.61  Score=43.23  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=28.2

Q ss_pred             ceEEEEcc-chhHHHHHHHHHHCCCeEEEEeCCH
Q 012866          304 RMFVLAGA-GGAGRALAFGAKSRGARVVIFDIDF  336 (454)
Q Consensus       304 k~vlViGa-GG~arai~~~L~~~G~~v~i~nRt~  336 (454)
                      |.|||.|+ |-.|+.++..|.+.|.+|+.++|..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68899995 6689999999999999999999843

>d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Domestic pigeon (Columba livia) [TaxId: 8932]

Probab=80.89  E-value=0.6  Score=42.59  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=28.0

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHH----HCC------C-eEEEEeCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAK----SRG------A-RVVIFDID  335 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~----~~G------~-~v~i~nRt  335 (454)
                      .++++.+++|.|||.+|-+++..|.    +.|      . +|++++|.
T Consensus        21 k~l~d~kiV~~GAGsAg~gia~~l~~~~~~~G~~~~~a~~~i~l~D~k   68 (298)
T d1gq2a1          21 NRLSDHTVLFQGAGEAALGIANLIVMAMQKEGVSKEEAIKRIWMVDSK   68 (298)
T ss_dssp             SCGGGCCEEEECCSHHHHHHHHHHHHHHHHHTCCHHHHHTTEEEEETT
T ss_pred             CCHHHcEEEEECccHHHHHHHHHHHHHHHHcCCChhhccceEEEEeCC
Confidence            5688899999999977777666654    334      3 79999874

>d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Pig roundworm (Ascaris suum) [TaxId: 6253]

Probab=80.72  E-value=0.61  Score=42.69  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=27.9

Q ss_pred             CCCCCceEEEEccchhHHHHHHHHH----HCC------C-eEEEEeCC
Q 012866          299 SPLAGRMFVLAGAGGAGRALAFGAK----SRG------A-RVVIFDID  335 (454)
Q Consensus       299 ~~~~~k~vlViGaGG~arai~~~L~----~~G------~-~v~i~nRt  335 (454)
                      ..+.+.+++|.|||.+|-+++..|.    ..|      . +|++++|.
T Consensus        21 k~l~d~kivi~GAGaAg~gia~~l~~~~~~~G~~~~~a~~~i~~vD~~   68 (308)
T d1o0sa1          21 KLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGISKEEACNRIYLMDID   68 (308)
T ss_dssp             CCGGGCCEEEECCSHHHHHHHHHHHHHHHTTTCCHHHHHHTEEEEETT
T ss_pred             CCHHHcEEEEECcCHHHHHHHHHHHHHHHhcCCchhhhhceEEEEeCC
Confidence            5678889999999977777666654    344      3 59999974

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.38  E-value=0.67  Score=42.46  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=25.7

Q ss_pred             ceEEEEccchhHHHHHHHHHH----CCCeEEEEeC
Q 012866          304 RMFVLAGAGGAGRALAFGAKS----RGARVVIFDI  334 (454)
Q Consensus       304 k~vlViGaGG~arai~~~L~~----~G~~v~i~nR  334 (454)
                      ..|+|||+|.+|..+|..+++    .|.+|.|+.+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK   56 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEK   56 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECS
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeC
Confidence            469999999999888887764    6889998874