Citrus Sinensis ID: 012869

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
MPPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCLIIALFYILL
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHEEcccHHHHHcccccccccccHHHHHHHHHcccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcc
ccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccHHHHHHHEEEHHHEEccccEEEHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHccHHcHHEHHcHEEcccHHHHHHHHHHHHHHHHHHHHHHHccccHccHHHHHHHHHHHHHHccccEEEEHEEEcccHHHHHHHcccHHHHHHHHHHHHHHHc
mppqqheqeqdhllplladdreeraydpteKVVVIGlddgdldnlstappfswkklwlftgpgflmsiafldpgnlegdlqsgaIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILsngilplwsGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWmfgetkpsgselLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALvqsrdidnnkkGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKgfygteqanniglvnagqylqekyggglfpILYIWGIGllaagqsstitgtyAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSqehimgtfkigPILKVCLIIALFYILL
mppqqheqeqdhLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCLIIALFYILL
MPPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIglddgdldNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCLIIALFYILL
****************************TEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCLIIALFYIL*
***************************************************SWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALV***************ALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCLIIALFYILL
**********DHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCLIIALFYILL
******************************************D*****PPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCLIIALFYILL
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHo
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MPPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKVCLIIALFYILL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query454 2.2.26 [Sep-21-2011]
Q9SNV9509 Metal transporter Nramp3 yes no 0.892 0.795 0.857 0.0
Q9C6B2530 Metal transporter Nramp2 no no 0.933 0.8 0.821 0.0
Q9FN18512 Metal transporter Nramp4 no no 0.953 0.845 0.792 0.0
Q2QN30541 Metal transporter Nramp6 yes no 0.911 0.765 0.800 0.0
Q10Q65524 Metal transporter Nramp2 no no 0.960 0.832 0.743 0.0
Q9SN36530 Metal transporter Nramp5 no no 0.997 0.854 0.687 1e-179
Q869V1533 Metal transporter nramp1 yes no 0.825 0.703 0.566 1e-126
P49283596 Protein Malvolio OS=Droso yes no 0.925 0.704 0.5 1e-117
P49282568 Natural resistance-associ yes no 0.850 0.679 0.530 1e-113
O54902568 Natural resistance-associ yes no 0.850 0.679 0.532 1e-113
>sp|Q9SNV9|NRAM3_ARATH Metal transporter Nramp3 OS=Arabidopsis thaliana GN=NRAMP3 PE=2 SV=2 Back     alignment and function desciption
 Score =  719 bits (1857), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/408 (85%), Positives = 385/408 (94%), Gaps = 3/408 (0%)

Query: 38  DDGDLDN---LSTAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLL 94
           ++ DL++      APPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQ+GA+AGYSLLWLL
Sbjct: 35  EEDDLEHGVGCGGAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAVAGYSLLWLL 94

Query: 95  LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGS 154
           +WATA+GLLVQLLSARLGVATGRHLAELCR+EYP+WARMVLWVMAELALIGSDIQEVIGS
Sbjct: 95  MWATAMGLLVQLLSARLGVATGRHLAELCRDEYPTWARMVLWVMAELALIGSDIQEVIGS 154

Query: 155 AIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGE 214
           AIAIKILSNGILPLW+GVVITALDCF+FLFLENYG+RKLEAVFAVLIATM +SFAWMFG+
Sbjct: 155 AIAIKILSNGILPLWAGVVITALDCFVFLFLENYGIRKLEAVFAVLIATMGVSFAWMFGQ 214

Query: 215 TKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQE 274
            KPSGSELLIGILVPKLSS+TIQ+AVGVVGCIIMPHNVFLHSALVQSR++D  +K RVQE
Sbjct: 215 AKPSGSELLIGILVPKLSSRTIQKAVGVVGCIIMPHNVFLHSALVQSREVDKRQKYRVQE 274

Query: 275 ALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPI 334
           AL YY+IEST+AL +SF+INLFVTTVFAKGFY T+ AN+IGLVNAGQYLQEKYGGG+FPI
Sbjct: 275 ALNYYTIESTIALFISFLINLFVTTVFAKGFYNTDLANSIGLVNAGQYLQEKYGGGVFPI 334

Query: 335 LYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFD 394
           LYIW IGLLAAGQSSTITGTYAGQFIMGGFLN ++KKWLRALITRSCAI+PTIIVALVFD
Sbjct: 335 LYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNFKMKKWLRALITRSCAIIPTIIVALVFD 394

Query: 395 TSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILK 442
           +SE  LDVLNEWLNVLQS+QIPFALIPLL LVS+E IMG+FKIGP+ K
Sbjct: 395 SSEATLDVLNEWLNVLQSIQIPFALIPLLCLVSKEQIMGSFKIGPLYK 442
Vacuolar metal transporter involved in intracellular metal homeostasis. Can transport iron (Fe), manganese (Mn) and cadmium (Cd). Regulates metal accumulation under Fe starvation. Acts redundantly with NRAMP4 to mobilize vacuolar Fe and provide sufficient Fe during seed germination. In association with NRAMP4, required for optimal growth and photosynthesis under Mn deficiency. Exports Mn from vacuoles in leaf mesophyll cells, making Mn available for functional photosystem II in chloroplasts. Involved in basal resistance to the bacterial pathogen E.chrysanthemi.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C6B2|NRAM2_ARATH Metal transporter Nramp2 OS=Arabidopsis thaliana GN=NRAMP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FN18|NRAM4_ARATH Metal transporter Nramp4 OS=Arabidopsis thaliana GN=NRAMP4 PE=2 SV=1 Back     alignment and function description
>sp|Q2QN30|NRAM6_ORYSJ Metal transporter Nramp6 OS=Oryza sativa subsp. japonica GN=NRAMP6 PE=2 SV=1 Back     alignment and function description
>sp|Q10Q65|NRAM2_ORYSJ Metal transporter Nramp2 OS=Oryza sativa subsp. japonica GN=NRAMP2 PE=2 SV=1 Back     alignment and function description
>sp|Q9SN36|NRAM5_ARATH Metal transporter Nramp5 OS=Arabidopsis thaliana GN=NRAMP5 PE=2 SV=1 Back     alignment and function description
>sp|Q869V1|NRAM1_DICDI Metal transporter nramp1 homolog OS=Dictyostelium discoideum GN=nramp1 PE=2 SV=1 Back     alignment and function description
>sp|P49283|MVL_DROME Protein Malvolio OS=Drosophila melanogaster GN=Mvl PE=2 SV=2 Back     alignment and function description
>sp|P49282|NRAM2_MOUSE Natural resistance-associated macrophage protein 2 OS=Mus musculus GN=Slc11a2 PE=1 SV=2 Back     alignment and function description
>sp|O54902|NRAM2_RAT Natural resistance-associated macrophage protein 2 OS=Rattus norvegicus GN=Slc11a2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
255567945509 natural resistance-associated macrophage 0.969 0.864 0.857 0.0
356541715506 PREDICTED: metal transporter Nramp3-like 0.958 0.859 0.830 0.0
225438902520 PREDICTED: metal transporter Nramp3 [Vit 0.951 0.830 0.861 0.0
356496941507 PREDICTED: metal transporter Nramp3-like 0.953 0.854 0.822 0.0
356511925516 PREDICTED: metal transporter Nramp3-like 0.958 0.843 0.818 0.0
351722293516 ferrous ion membrane transport protein D 0.933 0.821 0.84 0.0
348647349504 divalent metal transporter 1 [Arachis hy 0.951 0.857 0.826 0.0
224115064491 nramp transporter [Populus trichocarpa] 0.960 0.887 0.837 0.0
357482723514 Natural resistance-associated macrophage 0.958 0.846 0.825 0.0
388521715515 unknown [Medicago truncatula] 0.973 0.858 0.806 0.0
>gi|255567945|ref|XP_002524950.1| natural resistance-associated macrophage protein, putative [Ricinus communis] gi|223535785|gb|EEF37447.1| natural resistance-associated macrophage protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  768 bits (1982), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/443 (85%), Positives = 412/443 (93%), Gaps = 3/443 (0%)

Query: 1   MPPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWKKLWLFT 60
           MP Q H + Q  LL     + ++ AYD  EKV ++G+D GD +N  T PPFSW+KLWLFT
Sbjct: 1   MPLQDHNR-QPLLLNQEQQEEQDTAYDSDEKVHIVGID-GDSENEDT-PPFSWRKLWLFT 57

Query: 61  GPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLA 120
           GPGFLMSIAFLDPGNLEGDLQ+GAIAGYSLLWLL+WATA+GLLVQLLSARLGVATGRHLA
Sbjct: 58  GPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLA 117

Query: 121 ELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCF 180
           ELCREEYP+WARMVLW+MAELALIG+DIQEVIGSAIAIKILSNG+LPLW+GV+ITA DCF
Sbjct: 118 ELCREEYPTWARMVLWIMAELALIGADIQEVIGSAIAIKILSNGVLPLWAGVIITACDCF 177

Query: 181 IFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAV 240
           IFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKP G ELL+G+L+PKLSSKTIQQAV
Sbjct: 178 IFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPDGMELLLGVLIPKLSSKTIQQAV 237

Query: 241 GVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTV 300
           GVVGCIIMPHNVFLHSALVQSRD+D++KKGRVQEALRYYSIEST+ALV+SF+INLFVTTV
Sbjct: 238 GVVGCIIMPHNVFLHSALVQSRDVDHSKKGRVQEALRYYSIESTVALVISFVINLFVTTV 297

Query: 301 FAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFI 360
           FAK FYGTE AN+IGLVNAGQYLQ KYGGGLFPILYIW IGLLAAGQSSTITGTYAGQFI
Sbjct: 298 FAKAFYGTELANSIGLVNAGQYLQNKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFI 357

Query: 361 MGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALI 420
           MGGFLNLRLKKWLRALITRSCAIVPT+IVALVFDTSED LDVLNEWLNVLQSVQIPFALI
Sbjct: 358 MGGFLNLRLKKWLRALITRSCAIVPTMIVALVFDTSEDTLDVLNEWLNVLQSVQIPFALI 417

Query: 421 PLLYLVSQEHIMGTFKIGPILKV 443
           PLL LVS+E IMGTFKIGP+LK+
Sbjct: 418 PLLCLVSKEQIMGTFKIGPLLKM 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356541715|ref|XP_003539319.1| PREDICTED: metal transporter Nramp3-like [Glycine max] Back     alignment and taxonomy information
>gi|225438902|ref|XP_002283902.1| PREDICTED: metal transporter Nramp3 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356496941|ref|XP_003517323.1| PREDICTED: metal transporter Nramp3-like [Glycine max] Back     alignment and taxonomy information
>gi|356511925|ref|XP_003524672.1| PREDICTED: metal transporter Nramp3-like [Glycine max] Back     alignment and taxonomy information
>gi|351722293|ref|NP_001236727.1| ferrous ion membrane transport protein DMT1 [Glycine max] gi|31322147|gb|AAO39834.1| ferrous ion membrane transport protein DMT1 [Glycine max] Back     alignment and taxonomy information
>gi|348647349|gb|AEP81324.1| divalent metal transporter 1 [Arachis hypogaea] Back     alignment and taxonomy information
>gi|224115064|ref|XP_002332228.1| nramp transporter [Populus trichocarpa] gi|222831841|gb|EEE70318.1| nramp transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357482723|ref|XP_003611648.1| Natural resistance-associated macrophage protein [Medicago truncatula] gi|355512983|gb|AES94606.1| Natural resistance-associated macrophage protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|388521715|gb|AFK48919.1| unknown [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query454
TAIR|locus:2045344509 NRAMP3 "natural resistance-ass 0.969 0.864 0.809 1.7e-192
TAIR|locus:2036751530 NRAMP2 "NRAMP metal ion transp 0.986 0.845 0.779 1.1e-188
TAIR|locus:2158242512 NRAMP4 "natural resistance ass 0.977 0.867 0.773 4.4e-187
TAIR|locus:2124172530 NRAMP5 [Arabidopsis thaliana ( 0.973 0.833 0.702 1.2e-168
DICTYBASE|DDB_G0276973533 nramp1 "solute carrier family 0.830 0.707 0.569 1.8e-117
UNIPROTKB|P49281568 SLC11A2 "Natural resistance-as 0.566 0.452 0.619 4.3e-113
UNIPROTKB|A7MBI9562 SLC11A2 "Uncharacterized prote 0.566 0.457 0.611 6.2e-112
UNIPROTKB|F1Q2X9568 SLC11A2 "Uncharacterized prote 0.574 0.459 0.601 1.3e-111
MGI|MGI:1345279568 Slc11a2 "solute carrier family 0.572 0.457 0.6 5.5e-111
ZFIN|ZDB-GENE-021115-1547 slc11a2 "solute carrier family 0.566 0.469 0.596 5.5e-111
TAIR|locus:2045344 NRAMP3 "natural resistance-associated macrophage protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1865 (661.6 bits), Expect = 1.7e-192, P = 1.7e-192
 Identities = 362/447 (80%), Positives = 402/447 (89%)

Query:    15 PLLADDREER--AYDPTEKVVVIXXXXXXXXNLST----APPFSWKKLWLFTGPGFLMSI 68
             PLL ++ EE   AYD TEKV ++                APPFSWKKLWLFTGPGFLMSI
Sbjct:     9 PLLINEEEEEETAYDETEKVHIVRNEEEDDLEHGVGCGGAPPFSWKKLWLFTGPGFLMSI 68

Query:    69 AFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128
             AFLDPGNLEGDLQ+GA+AGYSLLWLL+WATA+GLLVQLLSARLGVATGRHLAELCR+EYP
Sbjct:    69 AFLDPGNLEGDLQAGAVAGYSLLWLLMWATAMGLLVQLLSARLGVATGRHLAELCRDEYP 128

Query:   129 SWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENY 188
             +WARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLW+GVVITALDCF+FLFLENY
Sbjct:   129 TWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWAGVVITALDCFVFLFLENY 188

Query:   189 GVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIM 248
             G+RKLEAVFAVLIATM +SFAWMFG+ KPSGSELLIGILVPKLSS+TIQ+AVGVVGCIIM
Sbjct:   189 GIRKLEAVFAVLIATMGVSFAWMFGQAKPSGSELLIGILVPKLSSRTIQKAVGVVGCIIM 248

Query:   249 PHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGT 308
             PHNVFLHSALVQSR++D  +K RVQEAL YY+IEST+AL +SF+INLFVTTVFAKGFY T
Sbjct:   249 PHNVFLHSALVQSREVDKRQKYRVQEALNYYTIESTIALFISFLINLFVTTVFAKGFYNT 308

Query:   309 EQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLR 368
             + AN+IGLVNAGQYLQEKYGGG+FPILYIW IGLLAAGQSSTITGTYAGQFIMGGFLN +
Sbjct:   309 DLANSIGLVNAGQYLQEKYGGGVFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLNFK 368

Query:   369 LKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQ 428
             +KKWLRALITRSCAI+PTIIVALVFD+SE  LDVLNEWLNVLQS+QIPFALIPLL LVS+
Sbjct:   369 MKKWLRALITRSCAIIPTIIVALVFDSSEATLDVLNEWLNVLQSIQIPFALIPLLCLVSK 428

Query:   429 EHIMGTFKIGPILK-VCLIIALFYILL 454
             E IMG+FKIGP+ K +  ++A   I++
Sbjct:   429 EQIMGSFKIGPLYKTIAWLVAALVIMI 455
GO:0005215 "transporter activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0015103 "inorganic anion transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=IEA
GO:0005384 "manganese ion transmembrane transporter activity" evidence=TAS
GO:0006828 "manganese ion transport" evidence=RCA;IMP;TAS
GO:0006875 "cellular metal ion homeostasis" evidence=NAS
GO:0015691 "cadmium ion transport" evidence=RCA;TAS
GO:0015692 "lead ion transport" evidence=TAS
GO:0030001 "metal ion transport" evidence=TAS
GO:0046873 "metal ion transmembrane transporter activity" evidence=TAS
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0010043 "response to zinc ion" evidence=IEP
GO:0005773 "vacuole" evidence=IDA
GO:0009617 "response to bacterium" evidence=IEP
GO:0042742 "defense response to bacterium" evidence=IMP
GO:2000379 "positive regulation of reactive oxygen species metabolic process" evidence=IGI
GO:0055072 "iron ion homeostasis" evidence=IMP
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
TAIR|locus:2036751 NRAMP2 "NRAMP metal ion transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158242 NRAMP4 "natural resistance associated macrophage protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124172 NRAMP5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0276973 nramp1 "solute carrier family 11 member 1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P49281 SLC11A2 "Natural resistance-associated macrophage protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A7MBI9 SLC11A2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1Q2X9 SLC11A2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1345279 Slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-021115-1 slc11a2 "solute carrier family 11 (proton-coupled divalent metal ion transporters), member 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P49282NRAM2_MOUSENo assigned EC number0.53040.85020.6795yesno
P49281NRAM2_HUMANNo assigned EC number0.54500.85020.6795yesno
Q2G2G3MNTH_STAA8No assigned EC number0.35620.86340.8711yesno
O77741NRAM1_PIGNo assigned EC number0.52510.86120.7267yesno
Q6GAA9MNTH_STAASNo assigned EC number0.35620.86340.8711yesno
Q49WM9MNTH_STAS1No assigned EC number0.39950.85020.8654yesno
Q92BT1MNTH_LISINNo assigned EC number0.37590.83920.8504yesno
Q4L5B9MNTH_STAHJNo assigned EC number0.35400.90300.9192yesno
O54902NRAM2_RATNo assigned EC number0.53280.85020.6795yesno
Q5HQ64MNTH_STAEQNo assigned EC number0.35830.88540.8874yesno
P51027NRAM1_CHICKNo assigned EC number0.51920.85900.7027yesno
Q5HGX9MNTH_STAACNo assigned EC number0.35620.86340.8711yesno
Q8CPM6MNTH_STAESNo assigned EC number0.35830.88540.8874yesno
Q8Y773MNTH_LISMONo assigned EC number0.37940.81930.8303yesno
Q89K67MNTH_BRAJANo assigned EC number0.39750.85020.8577yesno
A6QFW1MNTH_STAAENo assigned EC number0.35620.86340.8711yesno
Q869V1NRAM1_DICDINo assigned EC number0.56650.82590.7035yesno
Q03D26MNTH_LACC3No assigned EC number0.35740.92070.9126yesno
Q9FN18NRAM4_ARATHNo assigned EC number0.79270.95370.8457nono
Q8ZSB0MNTH_NOSS1No assigned EC number0.39270.82590.8484yesno
A5IRZ2MNTH_STAA9No assigned EC number0.35620.86340.8711yesno
Q99UZ7MNTH_STAANNo assigned EC number0.35620.86340.8711yesno
Q2QN30NRAM6_ORYSJNo assigned EC number0.80090.91180.7652yesno
Q98I99MNTH_RHILONo assigned EC number0.37580.89420.8942yesno
Q7A166MNTH_STAAWNo assigned EC number0.35620.86340.8711yesno
A6U0S3MNTH_STAA2No assigned EC number0.35620.86340.8711yesno
Q9SNV9NRAM3_ARATHNo assigned EC number0.85780.89200.7956yesno
B3W6P3MNTH_LACCBNo assigned EC number0.35600.92290.9148yesno
Q10Q65NRAM2_ORYSJNo assigned EC number0.74370.96030.8320nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019614001
SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (520 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
TIGR01197390 TIGR01197, nramp, NRAMP (natural resistance-associ 1e-141
PRK00701439 PRK00701, PRK00701, manganese transport protein Mn 1e-116
pfam01566364 pfam01566, Nramp, Natural resistance-associated ma 1e-114
COG1914416 COG1914, MntH, Mn2+ and Fe2+ transporters of the N 8e-84
>gnl|CDD|162246 TIGR01197, nramp, NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information 
 Score =  408 bits (1051), Expect = e-141
 Identities = 183/397 (46%), Positives = 246/397 (61%), Gaps = 25/397 (6%)

Query: 54  KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGV 113
           +KLW F GPGFLMSIA++DPGN   DLQ+GA AGY LLW+LL +  + LL+Q L ARLGV
Sbjct: 1   RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGV 60

Query: 114 ATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVV 173
            TG  LAE+CRE YP   R+ LW++AELA+I +D+ EVIG+AIA+ +LS+  +PLW GV+
Sbjct: 61  VTGLDLAEVCREHYPKVPRITLWILAELAIIATDMAEVIGTAIALNLLSH--IPLWGGVL 118

Query: 174 ITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPK--- 230
           IT +D F+FLFL+  G+R LEA  A+L+  +A+ FA+     KP   ++L G  VP    
Sbjct: 119 ITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYAKPGQVKVLFGGFVPSCAV 178

Query: 231 LSSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVS 290
             +  + QAVG++G  +MPH+++LHSALVQSR +D + K  V EA  Y  IE+ +AL VS
Sbjct: 179 FGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVS 238

Query: 291 FMINLFVTTVFAKGFYG---------------TEQANNIGLVNAGQYLQEKYGGGLFPIL 335
           F IN FV  +F    +                   A+   L + G  L   +        
Sbjct: 239 FSINEFVIALFTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFSPA---AG 295

Query: 336 YIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDT 395
           YI+ +GLLAAGQSS + GTY+GQF+M GFLN R   WLR LITR+ AI+P ++VA     
Sbjct: 296 YIFAVGLLAAGQSSGMVGTYSGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGR 355

Query: 396 SEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIM 432
               L        V+ S+ +PFALIPL+   S + IM
Sbjct: 356 EG--LTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390

This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene regulation and metal ion homeostasis. Nramp1 could confer resistance to infection in one of the two ways. (1) The uptake of Fe+2 can produce toxic hydroxyl radicals via Fenton reaction killing the pathogens in phagosomes or (2) Deplete the metal ion pools in the phagosome and deprive the pathogens of metal ions, which is critical for its survival [Transport and binding proteins, Cations and iron carrying compounds]. Length = 390
>gnl|CDD|234815 PRK00701, PRK00701, manganese transport protein MntH; Reviewed Back     alignment and domain information
>gnl|CDD|216575 pfam01566, Nramp, Natural resistance-associated macrophage protein Back     alignment and domain information
>gnl|CDD|224826 COG1914, MntH, Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 454
KOG1291503 consensus Mn2+ and Fe2+ transporters of the NRAMP 100.0
PRK00701439 manganese transport protein MntH; Reviewed 100.0
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 100.0
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 100.0
PF01566358 Nramp: Natural resistance-associated macrophage pr 100.0
TIGR00813407 sss transporter, SSS family. have different number 98.02
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 97.97
PRK15132403 tyrosine transporter TyrP; Provisional 97.97
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 97.93
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 97.92
PRK09442483 panF sodium/panthothenate symporter; Provisional 97.73
PRK13629443 threonine/serine transporter TdcC; Provisional 97.59
PRK15419502 proline:sodium symporter PutP; Provisional 97.48
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 97.46
COG1457442 CodB Purine-cytosine permease and related proteins 97.39
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.32
PRK09664415 tryptophan permease TnaB; Provisional 97.21
PRK09395551 actP acetate permease; Provisional 97.15
PRK10483414 tryptophan permease; Provisional 97.13
TIGR00814397 stp serine transporter. The HAAAP family includes 97.11
PRK12488549 acetate permease; Provisional 97.07
TIGR02711549 symport_actP cation/acetate symporter ActP. Member 96.97
TIGR00837381 araaP aromatic amino acid transport protein. aroma 96.8
COG0591493 PutP Na+/proline symporter [Amino acid transport a 96.76
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 96.74
COG3949349 Uncharacterized membrane protein [Function unknown 96.7
PRK11375484 allantoin permease; Provisional 96.69
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 96.67
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 96.57
COG0733439 Na+-dependent transporters of the SNF family [Gene 96.49
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 96.42
PRK10249458 phenylalanine transporter; Provisional 96.37
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 96.37
PRK11017404 codB cytosine permease; Provisional 96.26
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 96.07
TIGR00835425 agcS amino acid carrier protein. Members of the AG 95.84
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 95.82
PRK15049499 L-asparagine permease; Provisional 95.66
COG4147529 DhlC Predicted symporter [General function predict 95.57
PRK10238456 aromatic amino acid transporter; Provisional 95.41
COG0814415 SdaC Amino acid permeases [Amino acid transport an 95.41
PRK11021410 putative transporter; Provisional 95.31
PRK11387471 S-methylmethionine transporter; Provisional 95.26
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 95.12
PRK10484523 putative transporter; Provisional 95.11
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 95.08
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 94.82
TIGR00911501 2A0308 L-type amino acid transporter. 94.62
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 94.41
TIGR00913478 2A0310 amino acid permease (yeast). 94.1
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 94.03
TIGR00907482 2A0304 amino acid permease (GABA permease). 93.98
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 93.39
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 93.32
TIGR00908442 2A0305 ethanolamine permease. The three genes used 93.0
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 92.33
TIGR00930 953 2a30 K-Cl cotransporter. 92.16
PRK10746461 putative transport protein YifK; Provisional 91.98
COG0833541 LysP Amino acid transporters [Amino acid transport 91.94
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 91.68
PRK10197446 gamma-aminobutyrate transporter; Provisional 91.67
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 91.54
TIGR00909429 2A0306 amino acid transporter. 90.9
PRK10655438 potE putrescine transporter; Provisional 90.53
PRK11357445 frlA putative fructoselysine transporter; Provisio 89.96
PRK10644445 arginine:agmatin antiporter; Provisional 89.67
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 89.32
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 89.22
KOG1303437 consensus Amino acid transporters [Amino acid tran 88.68
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 88.62
KOG1289550 consensus Amino acid transporters [Amino acid tran 88.21
PF03845320 Spore_permease: Spore germination protein; InterPr 87.67
PRK10836489 lysine transporter; Provisional 87.39
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 87.14
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 86.42
TIGR00912359 2A0309 spore germination protein (amino acid perme 86.3
PRK10580457 proY putative proline-specific permease; Provision 85.86
PRK15015 701 carbon starvation protein A; Provisional 85.21
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.9e-96  Score=739.17  Aligned_cols=396  Identities=63%  Similarity=1.024  Sum_probs=378.4

Q ss_pred             CCCCcchhhhhhhcCCCceEEeeecCCCCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhc
Q 012869           47 TAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREE  126 (454)
Q Consensus        47 ~~~~~~~~~~~~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~  126 (454)
                      +.++++|||+|+++||||+||+||+||||++|+.|+||++||+|+|+++++++++.++|++++|+|+||||||+|.||++
T Consensus        19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~   98 (503)
T KOG1291|consen   19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE   98 (503)
T ss_pred             CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHHhcCccccchhhhhhhhhhhhhhhhhccchhhHHHHHHHHHHHHHH
Q 012869          127 YPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMAL  206 (454)
Q Consensus       127 ~g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll~gg~ip~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~lv~~m~l  206 (454)
                      ||||.+|.+|+++|++++++|++|++|+|+|+|+|++  +|+|+|+++|++|+++++++.|||.|++|.++.+++..|.+
T Consensus        99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~--IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai  176 (503)
T KOG1291|consen   99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN--IPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAI  176 (503)
T ss_pred             ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998  99999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccCCCcccceeeeeccCCC---hHHHHhhhceeeEEeccchhhhhhhhhhhcccCCCccchHHHhhhhhhhhh
Q 012869          207 SFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIES  283 (454)
Q Consensus       207 ~f~~~~~~~~P~~~~v~~g~~~P~~~---~~~l~~~vaiiG~ti~P~~~f~~S~~v~~r~~~~~~~~~~~~~l~~~~~D~  283 (454)
                      ||.+++..++|+.+|+..|.++|+.+   ++.+..++|++|++|||||+|+||++||+|+.|++.+.+.+|+.+|..+|+
T Consensus       177 ~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies  256 (503)
T KOG1291|consen  177 SFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES  256 (503)
T ss_pred             HHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH
Confidence            99999999999999999998999986   789999999999999999999999999999999988888999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHh-hccccCccccccc-------------cccchhhhHHHHhCCCcchHHHHHHHhHhhccccc
Q 012869          284 TLALVVSFMINLFVTTVF-AKGFYGTEQANNI-------------GLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSS  349 (454)
Q Consensus       284 ~~g~~vs~~i~~~i~~~~-A~~l~~~~~~~~~-------------~~~~a~~~L~~~~G~~~~~a~~lF~igllaag~sS  349 (454)
                      .+++.+++.||.+++.++ |+.+|++.+.+..             ++.+++..|+..+|+   ++.++|++|+++|||||
T Consensus       257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~---~a~~Ifai~lLasGQSs  333 (503)
T KOG1291|consen  257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGP---AALYIFAIGLLASGQSS  333 (503)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhcc---HHHHHHHHHHHHCCCcc
Confidence            999999999999999998 9999987654322             356678999999998   89999999999999999


Q ss_pred             eeeeccchhhhhcccchhhHHHHHHHHHhhccccccceeeEEEecCCcchHHhHHHHHHHHhhccccchhhhhhhhhccc
Q 012869          350 TITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQE  429 (454)
Q Consensus       350 ~it~~~ag~~i~~~~l~~~~~~~~~~~~~~~~~~~pa~~v~~~~g~~~~~l~~l~~~~~v~~~~~lP~~~~~ll~l~n~k  429 (454)
                      ++|+||+||++||||+||+++||.||++||+++++|++++++.+|..  .+.++++++||++++++||+++|++.++++|
T Consensus       334 titgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~--~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r  411 (503)
T KOG1291|consen  334 TITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGED--GLSGLNDFLNVLQSLQLPFAVIPLLTFTSSR  411 (503)
T ss_pred             cceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcc--cHHHHHHHHHHHHHHhhhHHHhhHHhhhccH
Confidence            99999999999999999999999999999999999999999988855  3889999999999999999999999999999


Q ss_pred             eeeeEEeEcchhHHHHHHHH
Q 012869          430 HIMGTFKIGPILKVCLIIAL  449 (454)
Q Consensus       430 ~img~~~~~~~~~~l~~i~~  449 (454)
                      ++||+|+|+...+..+|...
T Consensus       412 ~IM~~~~~~~~~~~~~~~~~  431 (503)
T KOG1291|consen  412 KIMGVFKNGLVTEELTWTVA  431 (503)
T ss_pred             HHhhhhccCccceeeeehhe
Confidence            99999999999988887654

>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query454
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 3e-05
 Identities = 65/447 (14%), Positives = 135/447 (30%), Gaps = 122/447 (27%)

Query: 2   PPQQHEQEQDHLLPLLADDREERAYDPTEKVVVIGLDDGDLDNLSTAPPFSWK-KLWLFT 60
              +    Q  L  LL     E          ++ L   ++ N      F+   K+ L T
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCL-------LV-LL--NVQNAKAWNAFNLSCKILLTT 272

Query: 61  GPGFLMSIA-FLDPGN-----LEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVA 114
                  +  FL         L+               LL +   +    Q L       
Sbjct: 273 RF---KQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKY---LDCRPQDLPRE---V 322

Query: 115 TGRH------LAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPL 168
              +      +AE  R+   +W     W           +  +I S  ++ +L       
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDN---WKHVNC----DKLTTIIES--SLNVLEPAEY-- 371

Query: 169 WSGVVITALDCF--IFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGI 226
                      F  + +F  +             I T+ LS  W   +   S   +    
Sbjct: 372 --------RKMFDRLSVFPPS-----------AHIPTILLSLIW--FDVIKSDVMV---- 406

Query: 227 LVPKLSSKTI--QQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIEST 284
           +V KL   ++  +Q             + + S  ++ +    N+    +  + +Y+I   
Sbjct: 407 VVNKLHKYSLVEKQPK--------ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK- 457

Query: 285 LALVVSFMINLFVTTVFAKGFYGTEQANNIG--LVNAGQYLQEKYGGGLFPILYI---WG 339
                +F  +  +     + FY     ++IG  L N      E+    LF ++++   + 
Sbjct: 458 -----TFDSDDLIPPYLDQYFY-----SHIGHHLKNIEHP--ERM--TLFRMVFLDFRF- 502

Query: 340 IGLLAAGQSSTITGTYAGQFIMGGFLNL--RLKKWLRALITRSCAIVPTIIVAL---VFD 394
              L       I          G  LN   +LK + +  I  +      ++ A+   +  
Sbjct: 503 ---LEQ----KIRHDSTAWNASGSILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPK 554

Query: 395 TSEDMLDVLNEWLNVLQSVQIPFALIP 421
             E++  + +++ ++L+      AL+ 
Sbjct: 555 IEENL--ICSKYTDLLR-----IALMA 574

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query454
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 98.06
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 96.61
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 96.14
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 96.12
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 96.01
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 90.98
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
Probab=98.06  E-value=5.2e-05  Score=79.91  Aligned_cols=107  Identities=10%  Similarity=0.096  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHhhhcCCchHHHHHHHHHHHHHhcccHHHHHhHHHHHHHH----hcC
Q 012869           89 SLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKIL----SNG  164 (454)
Q Consensus        89 ~LLW~llla~~~~~~~Q~~~aRlg~vTG~~l~e~~r~~~g~~~~~~l~~~~~l~~i~~~i~e~iG~aial~ll----~gg  164 (454)
                      +.++.+++++++...+--..++.|..+|.+..+..|..||++...+.-++..+..++-..-+....+.+++.+    +| 
T Consensus        60 ~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g-  138 (501)
T 2jln_A           60 QVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG-  138 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            4456778888888888888999999999999999999999877654332222222222222333333344443    35 


Q ss_pred             ccc-cchhhhhhhhhhhhhhhhhccchhhHHHHHHHH
Q 012869          165 ILP-LWSGVVITALDCFIFLFLENYGVRKLEAVFAVL  200 (454)
Q Consensus       165 ~ip-~~~~v~i~~~~~~~~l~~~~yg~~~lE~~~~~l  200 (454)
                       .+ .+++.++..+....+.+   +|+|.++++.++.
T Consensus       139 -~~~~~v~~~i~~~l~~~~~~---~G~~~i~~~~~~~  171 (501)
T 2jln_A          139 -FTNLPLWIVIFGAIQVVTTF---YGITFIRWMNVFA  171 (501)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHT---THHHHHHHHHHHH
T ss_pred             -cchHHHHHHHHHHHHHHHHH---hCHHHHHHHHHHH
Confidence             44 56666655544333332   3445555554443
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00