Citrus Sinensis ID: 012879
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | 2.2.26 [Sep-21-2011] | |||||||
| Q680Z7 | 504 | Pentatricopeptide repeat- | yes | no | 0.991 | 0.892 | 0.558 | 1e-142 | |
| Q9SIL5 | 534 | Pentatricopeptide repeat- | no | no | 0.903 | 0.767 | 0.386 | 3e-83 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.898 | 0.658 | 0.380 | 6e-81 | |
| Q9FMA1 | 530 | Pentatricopeptide repeat- | no | no | 0.933 | 0.8 | 0.365 | 4e-80 | |
| Q9CA54 | 643 | Pentatricopeptide repeat- | no | no | 0.905 | 0.639 | 0.355 | 2e-78 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.894 | 0.642 | 0.375 | 2e-77 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.830 | 0.583 | 0.381 | 1e-76 | |
| Q9FNN7 | 511 | Pentatricopeptide repeat- | no | no | 0.962 | 0.855 | 0.365 | 5e-74 | |
| Q9C501 | 538 | Pentatricopeptide repeat- | no | no | 0.839 | 0.708 | 0.362 | 6e-73 | |
| Q9SJZ3 | 681 | Pentatricopeptide repeat- | no | no | 0.898 | 0.599 | 0.342 | 3e-72 |
| >sp|Q680Z7|PPR24_ARATH Pentatricopeptide repeat-containing protein At1g09220, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E25 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 506 bits (1302), Expect = e-142, Method: Compositional matrix adjust.
Identities = 259/464 (55%), Positives = 322/464 (69%), Gaps = 14/464 (3%)
Query: 3 ILQNSQTPNNITTQIHSHLLTTNSLLHHSQ-------LFNTLLHFYSLAESPQKAFLLYK 55
++Q ++ I Q+HSH T+ LL H + LFN LL YSL E+P A+ LY
Sbjct: 42 LMQKYESNLKIIHQLHSHFTTSGFLLLHQKQNSGKLFLFNPLLRCYSLGETPLHAYFLYD 101
Query: 56 QLQQIY--THSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVIS--KVGFQSHVYV 111
QLQ+++ + + LPP FDSFTY FL++ + P+L + K+GF+SHVYV
Sbjct: 102 QLQRLHFLSDHNKSLPP-FDSFTYLFLLKASSNPRFPSLLLGIGLHGLTLKLGFESHVYV 160
Query: 112 NTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNV 171
TALV MY+ G + D+ K+FDEMPERN VTWNVMITGL G+ E A E+MP R V
Sbjct: 161 QTALVGMYLVGGNMIDAHKVFDEMPERNPVTWNVMITGLTNLGDFEKALCFLEKMPNRTV 220
Query: 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHG 231
VSWT IIDGY R+++ EA+ LF +MVAC+ +P+EITILA+LPA+W GD+K C +H
Sbjct: 221 VSWTTIIDGYARVDKPKEAILLFSRMVACDAIKPNEITILAILPAVWNLGDLKMCGSVHA 280
Query: 232 YGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGM 291
Y KRGF DIRV N LID YAKCGCI SA K F +I RKNLVSWT++IS FA+HGM
Sbjct: 281 YVGKRGFVPCDIRVTNSLIDAYAKCGCIQSAFKFFIEIPNGRKNLVSWTTMISAFAIHGM 340
Query: 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG-LNFFDKMVEECEVLPDIKHY 350
GKEAV F M+++GLKPNRVT +SVLNACSHGGL EE L FF+ MV E ++ PD+KHY
Sbjct: 341 GKEAVSMFKDMERLGLKPNRVTMISVLNACSHGGLAEEEFLEFFNTMVNEYKITPDVKHY 400
Query: 351 GCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEME 410
GCL+DML R GRLE+AEK AL IP E VVWR LLGACS + + E+ ERVTRK++E+E
Sbjct: 401 GCLVDMLRRKGRLEEAEKIALEIPIE-EKAVVWRMLLGACSVYDDAELAERVTRKLMELE 459
Query: 411 RGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
R +GGDYVLM NI G GRF DA+R R+ MD R K+PG S V
Sbjct: 460 RSHGGDYVLMSNIFCGTGRFLDAQRFRKQMDVRGVAKLPGHSQV 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 309 bits (791), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 163/422 (38%), Positives = 258/422 (61%), Gaps = 12/422 (2%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
L+N+++ Y+ +YKQL LP D FT+ F+ ++CA+L L
Sbjct: 75 LYNSIIRAYTHNSLYCDVIRIYKQL----LRKSFELP---DRFTFPFMFKSCASLGSCYL 127
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G Q+H + K G + HV AL++MY+ L D+ K+FDEM ER++++WN +++G +
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G+++ A+ LF M + +VSWT +I GYT + EA+ FR+M EP EI++++
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAG-IEPDEISLIS 246
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
VLP+ Q G ++ + IH Y E+RGF V N LI+ Y+KCG I A +LF + E
Sbjct: 247 VLPSCAQLGSLELGKWIHLYAERRGFLK-QTGVCNALIEMYSKCGVISQAIQLFGQM--E 303
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
K+++SW+++ISG+A HG A+E F MQ+ +KPN +TFL +L+ACSH G+ +EGL
Sbjct: 304 GKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLR 363
Query: 333 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392
+FD M ++ ++ P I+HYGCLID+L RAG+LE+A + +P + D +W +LL +C
Sbjct: 364 YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK-PDSKIWGSLLSSCRT 422
Query: 393 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
GN+++ ++E+E G+YVL+ NI A +G++ D RLR+++ N K PG S
Sbjct: 423 PGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGS 482
Query: 453 LV 454
L+
Sbjct: 483 LI 484
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 260/423 (61%), Gaps = 15/423 (3%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
L+N ++ +S ++ P+++ LLY+++ S +P +++T+ L++ C+ LS
Sbjct: 82 LWNLMIRGFSCSDEPERSLLLYQRM----LCSSAP----HNAYTFPSLLKACSNLSAFEE 133
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
TQ+HA I+K+G+++ VY +L+N Y G K + LFD +PE + V+WN +I G VK
Sbjct: 134 TTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 193
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G+++ A +LF +M +N +SWT +I GY + + + EAL LF +M + EP +++
Sbjct: 194 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD-VEPDNVSLAN 252
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC-LIDTYAKCGCIFSASKLFEDISV 271
L A Q G ++ + IH Y K VL C LID YAKCG + A ++F++I
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIRMDS--VLGCVLIDMYAKCGEMEEALEVFKNI-- 308
Query: 272 ERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGL 331
++K++ +WT++ISG+A HG G+EA+ F MQK+G+KPN +TF +VL ACS+ GLVEEG
Sbjct: 309 KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
F M + + P I+HYGC++D+LGRAG L++A++ +P + + V+W LL AC
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK-PNAVIWGALLKACR 427
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
H N+E+GE + ++ ++ +GG YV NI A ++ A RR+M E+ KVPGC
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGC 487
Query: 452 SLV 454
S +
Sbjct: 488 STI 490
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMA1|PP433_ARATH Pentatricopeptide repeat-containing protein At5g56310 OS=Arabidopsis thaliana GN=PCMP-E13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (765), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 161/441 (36%), Positives = 261/441 (59%), Gaps = 17/441 (3%)
Query: 16 QIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSF 75
+ +H N+ LH NT++ SL + P + ++++ P D+F
Sbjct: 68 SVFTHQPCPNTYLH-----NTMIRALSLLDEPNAHSIAITVYRKLWALCAKP-----DTF 117
Query: 76 TYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEM 135
T+ F+++ +S G Q+H + GF S V+V T L+ MY S G L D+ K+FDEM
Sbjct: 118 TFPFVLKIAVRVSDVWFGRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEM 177
Query: 136 PERNLVTWNVMITGLVKWGELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALAL 193
+++ WN ++ G K GE++ ARSL E MPC RN VSWT +I GY + R++EA+ +
Sbjct: 178 LVKDVNVWNALLAGYGKVGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEV 237
Query: 194 FRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253
F++M+ E EP E+T+LAVL A G ++ + I Y + RG + + N +ID Y
Sbjct: 238 FQRMLM-ENVEPDEVTLLAVLSACADLGSLELGERICSYVDHRGMNR-AVSLNNAVIDMY 295
Query: 254 AKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT 313
AK G I A +FE V +N+V+WT+II+G A HG G EA+ F RM K G++PN VT
Sbjct: 296 AKSGNITKALDVFE--CVNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVT 353
Query: 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373
F+++L+ACSH G V+ G F+ M + + P+I+HYGC+ID+LGRAG+L +A++ +
Sbjct: 354 FIAILSACSHVGWVDLGKRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSM 413
Query: 374 PSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDA 433
P + + +W +LL A + H ++E+GER +++++E G+Y+L+ N+ + +GR+ ++
Sbjct: 414 PFK-ANAAIWGSLLAASNVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDES 472
Query: 434 ERLRRVMDERNAFKVPGCSLV 454
+R +M K+ G S +
Sbjct: 473 RMMRNMMKGIGVKKMAGESSI 493
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA54|PP122_ARATH Pentatricopeptide repeat-containing protein At1g74630 OS=Arabidopsis thaliana GN=PCMP-H71 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 293 bits (750), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 161/453 (35%), Positives = 260/453 (57%), Gaps = 42/453 (9%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
+FNTL+ YS ++ P + ++ ++ + P DSF+++F+I+
Sbjct: 72 MFNTLVRGYSESDEPHNSVAVFVEMMR----KGFVFP---DSFSFAFVIKAVENFRSLRT 124
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLV----------- 141
G Q+H K G +SH++V T L+ MY G ++ + K+FDEM + NLV
Sbjct: 125 GFQMHCQALKHGLESHLFVGTTLIGMYGGCGCVEFARKVFDEMHQPNLVAWNAVITACFR 184
Query: 142 --------------------TWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGY 181
+WNVM+ G +K GELE A+ +F EMP R+ VSW+ +I G
Sbjct: 185 GNDVAGAREIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGI 244
Query: 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF 241
NE+ FR++ + P+E+++ VL A Q+G + +++HG+ EK G++ +
Sbjct: 245 AHNGSFNESFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYS-W 302
Query: 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301
+ V N LID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+EAV F
Sbjct: 303 IVSVNNALIDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVRLFNE 361
Query: 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361
M G+ P+ ++F+S+L+ACSH GL+EEG ++F +M + P+I+HYGC++D+ GR+G
Sbjct: 362 MTAYGVTPDGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSG 421
Query: 362 RLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421
+L++A +P T +VWRTLLGACS HGN+E+ E+V +++ E++ GD VL+
Sbjct: 422 KLQKAYDFICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLS 480
Query: 422 NILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
N A G++ D +R+ M + K SLV
Sbjct: 481 NAYATAGKWKDVASIRKSMIVQRIKKTTAWSLV 513
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (741), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 159/423 (37%), Positives = 250/423 (59%), Gaps = 17/423 (4%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
LF ++ S+ +AFLLY QL S + P + FT+S L+++C+T S
Sbjct: 97 LFTAAINTASINGLKDQAFLLYVQLLS------SEINP--NEFTFSSLLKSCSTKS---- 144
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G +H + K G YV T LV++Y G + + K+FD MPER+LV+ MIT K
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAK 204
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G +E AR+LF+ M R++VSW +IDGY + N+AL LF+K++A +P EIT++A
Sbjct: 205 QGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVA 264
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
L A Q G +++ + IH + K +++V LID Y+KCG + A +F D
Sbjct: 265 ALSACSQIGALETGRWIHVF-VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFND--TP 321
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV-GLKPNRVTFLSVLNACSHGGLVEEGL 331
RK++V+W ++I+G+AMHG ++A+ F MQ + GL+P +TF+ L AC+H GLV EG+
Sbjct: 322 RKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGI 381
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
F+ M +E + P I+HYGCL+ +LGRAG+L++A +T + + D V+W ++LG+C
Sbjct: 382 RIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD-ADSVLWSSVLGSCK 440
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
HG+ +G+ + ++ + G YVL+ NI A VG + ++R +M E+ K PG
Sbjct: 441 LHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGI 500
Query: 452 SLV 454
S +
Sbjct: 501 STI 503
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 151/396 (38%), Positives = 244/396 (61%), Gaps = 19/396 (4%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
+ FT+ +++ CA G Q+H + K GF +V + LV MYV GF+KD+ LF
Sbjct: 127 NRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLF 186
Query: 133 DE---------MPER-----NLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGII 178
+ M +R +V WNVMI G ++ G+ + AR LF++M R+VVSW +I
Sbjct: 187 YKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMI 246
Query: 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGF 238
GY+ +A+ +FR+M + P+ +T+++VLPAI + G ++ + +H Y E G
Sbjct: 247 SGYSLNGFFKDAVEVFREMKKGD-IRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGI 305
Query: 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 298
D+ + + LID Y+KCG I A +FE + R+N+++W+++I+GFA+HG +A++
Sbjct: 306 RIDDV-LGSALIDMYSKCGIIEKAIHVFE--RLPRENVITWSAMINGFAIHGQAGDAIDC 362
Query: 299 FGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG 358
F +M++ G++P+ V ++++L ACSHGGLVEEG +F +MV + P I+HYGC++D+LG
Sbjct: 363 FCKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLG 422
Query: 359 RAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418
R+G L++AE+ L +P + D V+W+ LLGAC GNVEMG+RV +++M G YV
Sbjct: 423 RSGLLDEAEEFILNMPIKPDD-VIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYV 481
Query: 419 LMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
+ N+ A G + + +R M E++ K PGCSL+
Sbjct: 482 ALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLI 517
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510 OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 168/460 (36%), Positives = 254/460 (55%), Gaps = 23/460 (5%)
Query: 12 NITTQIHSHLL-----TTNSLLHHSQLFNTLLHFYSLAESPQKA-FLLYKQLQQIYTHSH 65
N Q+H+H L T LL L L++ L + Q + LY +L Q Y H
Sbjct: 2 NGIKQLHAHCLRTGVDETKDLLQRLLLIPNLVYARKLFDHHQNSCTFLYNKLIQAYYVHH 61
Query: 66 SPLPPL-------FDSF-----TYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT 113
P + FD T++F+ A+ S LH+ + GF+S + T
Sbjct: 62 QPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPLRLLHSQFFRSGFESDSFCCT 121
Query: 114 ALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVS 173
L+ Y LG L + ++FDEM +R++ WN MITG + G+++ A LF+ MP +NV S
Sbjct: 122 TLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTS 181
Query: 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYG 233
WT +I G+++ +EAL +F M + +P+ IT+++VLPA G+++ + + GY
Sbjct: 182 WTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYA 241
Query: 234 EKRGFTAFD-IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMG 292
+ GF FD I V N I+ Y+KCG I A +LFE++ +R NL SW S+I A HG
Sbjct: 242 RENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQR-NLCSWNSMIGSLATHGKH 298
Query: 293 KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGC 352
EA+ F +M + G KP+ VTF+ +L AC HGG+V +G F M E ++ P ++HYGC
Sbjct: 299 DEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGC 358
Query: 353 LIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412
+ID+LGR G+L++A +P + D VVW TLLGACSFHGNVE+ E + + ++E
Sbjct: 359 MIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPT 417
Query: 413 YGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
G+ V+M NI A ++ R+R++M + K G S
Sbjct: 418 NPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYS 457
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C501|PPR70_ARATH Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 141/389 (36%), Positives = 233/389 (59%), Gaps = 8/389 (2%)
Query: 70 PLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS-LGFLKDS 128
P + F Y ++++ LS +H + K GF +V V TAL++ Y S + + +
Sbjct: 122 PRPNHFIYPLVLKSTPYLSSAFSTPLVHTHLFKSGFHLYVVVQTALLHSYASSVSHITLA 181
Query: 129 SKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188
+LFDEM ERN+V+W M++G + G++ A +LFE+MP R+V SW I+ T+
Sbjct: 182 RQLFDEMSERNVVSWTAMLSGYARSGDISNAVALFEDMPERDVPSWNAILAACTQNGLFL 241
Query: 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC 248
EA++LFR+M+ P+E+T++ VL A Q G ++ + IH + +R ++ D+ V N
Sbjct: 242 EAVSLFRRMINEPSIRPNEVTVVCVLSACAQTGTLQLAKGIHAFAYRRDLSS-DVFVSNS 300
Query: 249 LIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG-- 306
L+D Y KCG + AS +F+ S +K+L +W S+I+ FA+HG +EA+ F M K+
Sbjct: 301 LVDLYGKCGNLEEASSVFKMAS--KKSLTAWNSMINCFALHGRSEEAIAVFEEMMKLNIN 358
Query: 307 -LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365
+KP+ +TF+ +LNAC+HGGLV +G +FD M + P I+HYGCLID+LGRAGR ++
Sbjct: 359 DIKPDHITFIGLLNACTHGGLVSKGRGYFDLMTNRFGIEPRIEHYGCLIDLLGRAGRFDE 418
Query: 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425
A + + + D +W +LL AC HG++++ E + ++ + GG +M N+
Sbjct: 419 ALEVMSTMKMK-ADEAIWGSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYG 477
Query: 426 GVGRFGDAERLRRVMDERNAFKVPGCSLV 454
+G + +A R R+++ +NA+K PG S +
Sbjct: 478 EMGNWEEARRARKMIKHQNAYKPPGWSRI 506
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SJZ3|PP169_ARATH Pentatricopeptide repeat-containing protein At2g22410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E28 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 144/421 (34%), Positives = 239/421 (56%), Gaps = 13/421 (3%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+N L++ Y +KA +YK ++ S P D T L+ +C+ L N G
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLME-----SEGVKP---DDVTMIGLVSSCSMLGDLNRG 276
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
+ + + + G + + + AL++M+ G + ++ ++FD + +R +V+W MI+G +
Sbjct: 277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARC 336
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
G L+ +R LF++M ++VV W +I G + R +ALALF++M T+P EIT++
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN-TKPDEITMIHC 395
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
L A Q G + IH Y EK + ++ + L+D YAKCG I A +F I +
Sbjct: 396 LSACSQLGALDVGIWIHRYIEKYSLS-LNVALGTSLVDMYAKCGNISEALSVFHGI--QT 452
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333
+N +++T+II G A+HG A+ F M G+ P+ +TF+ +L+AC HGG+++ G ++
Sbjct: 453 RNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDY 512
Query: 334 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH 393
F +M + P +KHY ++D+LGRAG LE+A++ +P E D VW LL C H
Sbjct: 513 FSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME-ADAAVWGALLFGCRMH 571
Query: 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453
GNVE+GE+ +K+LE++ G YVL+ + + DA+R RR+M+ER K+PGCS
Sbjct: 572 GNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSS 631
Query: 454 V 454
+
Sbjct: 632 I 632
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | ||||||
| 225444407 | 470 | PREDICTED: pentatricopeptide repeat-cont | 0.969 | 0.936 | 0.616 | 1e-153 | |
| 147772248 | 538 | hypothetical protein VITISV_033453 [Viti | 0.958 | 0.808 | 0.611 | 1e-152 | |
| 224123708 | 337 | predicted protein [Populus trichocarpa] | 0.742 | 1.0 | 0.771 | 1e-151 | |
| 449459636 | 495 | PREDICTED: pentatricopeptide repeat-cont | 0.949 | 0.870 | 0.595 | 1e-151 | |
| 356506146 | 503 | PREDICTED: pentatricopeptide repeat-cont | 0.958 | 0.864 | 0.579 | 1e-149 | |
| 255568986 | 337 | pentatricopeptide repeat-containing prot | 0.742 | 1.0 | 0.756 | 1e-149 | |
| 357469567 | 494 | Pentatricopeptide repeat-containing prot | 0.982 | 0.902 | 0.554 | 1e-147 | |
| 356554965 | 517 | PREDICTED: pentatricopeptide repeat-cont | 0.958 | 0.841 | 0.572 | 1e-147 | |
| 147860607 | 610 | hypothetical protein VITISV_027522 [Viti | 0.922 | 0.686 | 0.608 | 1e-143 | |
| 302144057 | 627 | unnamed protein product [Vitis vinifera] | 0.914 | 0.661 | 0.609 | 1e-142 |
| >gi|225444407|ref|XP_002265471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 276/448 (61%), Positives = 328/448 (73%), Gaps = 8/448 (1%)
Query: 9 TPNNITTQIHSHLLTTNSLLHHSQL--FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHS 66
T + Q+HSHL+TT + H + +N LL YSL PQ+AFLL++ L+ H
Sbjct: 27 TRRSAMQQLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLRL-----HH 81
Query: 67 PLPPLFDSFTYSFLI-RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125
PPL + + CA L H G QLHA+ K+GF+ HVYV+T L+N+Y + G
Sbjct: 82 VYPPLSFDSFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAF 141
Query: 126 KDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMN 185
++ ++FDEMP RN VTWNV ITGL KWGEL A SL +EMP VVSWT IIDGYTRMN
Sbjct: 142 LEAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMN 201
Query: 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRV 245
+ +ALALF M E +P+EIT+LA+ PAI G ++ CQLIH YGEK G A DIR+
Sbjct: 202 QPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRI 261
Query: 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305
L+DTYAKCGCI SAS +F +I+ + +NLVSWTSIIS FAMHGM KEA+ENF RMQK
Sbjct: 262 RTSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKE 321
Query: 306 GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365
LKPNR+TFLSVLNACSHGGLVEEGL F KMV EC++ PD+KHYGCLIDMLGRAGRL++
Sbjct: 322 CLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDE 381
Query: 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425
AEK AL IP + +VV+WRTLLGACSFHGNVEMG RVTRKILEMER YGGDYVL+ NI A
Sbjct: 382 AEKMALEIPDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFA 441
Query: 426 GVGRFGDAERLRRVMDERNAFKVPGCSL 453
GVGRF D ER+RR+MDERNA KVPG S
Sbjct: 442 GVGRFWDVERVRRLMDERNASKVPGLSF 469
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147772248|emb|CAN78346.1| hypothetical protein VITISV_033453 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-152, Method: Compositional matrix adjust.
Identities = 271/443 (61%), Positives = 326/443 (73%), Gaps = 8/443 (1%)
Query: 9 TPNNITTQIHSHLLTTNSLLHHSQL--FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHS 66
T + Q+HSHL+TT + H + +N LL YSL PQ+AFLL++ L+ H
Sbjct: 27 TRRSAMQQLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLRL-----HH 81
Query: 67 PLPPLFDSFTYSFLI-RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125
PPL + + CA L H G QLHA+ K+GF+ HVYV+T L+N+Y + G
Sbjct: 82 VYPPLSFDSFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAF 141
Query: 126 KDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMN 185
++ ++FDEMP RN VTWNV ITGL KWGEL ARSL +EMP VVSWT IIDGYTRMN
Sbjct: 142 LEAKQVFDEMPVRNSVTWNVFITGLAKWGELHLARSLLDEMPMPTVVSWTTIIDGYTRMN 201
Query: 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRV 245
+ +ALALF M E +P+EIT+LA+ PAI G ++ CQLIH YGEK G A DIR+
Sbjct: 202 QPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRI 261
Query: 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305
L+DTYAKCGCI SAS++F +I + +NLVSWTSIIS FAMHGM KEA+ENF RMQK
Sbjct: 262 RTSLLDTYAKCGCIESASRVFGEIDAKSRNLVSWTSIISAFAMHGMAKEALENFERMQKE 321
Query: 306 GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365
LKPNR+TFLSVLNACSHGGLVEEGL FF KMV + ++ PD+KHYGCLIDMLGRAGRL++
Sbjct: 322 CLKPNRITFLSVLNACSHGGLVEEGLKFFTKMVNKYQISPDVKHYGCLIDMLGRAGRLDE 381
Query: 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425
AEK AL IP+ + +VV+WRTLLGACSFHGNVEMG RVTRKILEME+ YGGDYVL+ NI A
Sbjct: 382 AEKMALEIPNYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMEKKYGGDYVLLSNIFA 441
Query: 426 GVGRFGDAERLRRVMDERNAFKV 448
GVGRF D ER+RR+MDERNA K
Sbjct: 442 GVGRFWDVERVRRLMDERNASKA 464
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123708|ref|XP_002319146.1| predicted protein [Populus trichocarpa] gi|222857522|gb|EEE95069.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 260/337 (77%), Positives = 292/337 (86%)
Query: 118 MYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGI 177
MY+S G L D+ LFDEMP+RN+VTWNVMITGLVKWG+LEFA SLF+EMP +NVVSWTGI
Sbjct: 1 MYLSSGVLGDAMILFDEMPKRNVVTWNVMITGLVKWGKLEFASSLFDEMPEKNVVSWTGI 60
Query: 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG 237
IDGY R N+ +E L+LFR+MV CE +P+EITILA+LPAI G++KSC LIHGY EKRG
Sbjct: 61 IDGYIRNNKYSEGLSLFRRMVVCEGIKPTEITILAILPAISNMGELKSCSLIHGYAEKRG 120
Query: 238 FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 297
F AFDIRV N +ID Y+KCGCI SA K FEDISVERKNLVSWTSIISGFAMHGM KEAVE
Sbjct: 121 FNAFDIRVANSIIDCYSKCGCIASAFKFFEDISVERKNLVSWTSIISGFAMHGMWKEAVE 180
Query: 298 NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357
F RM+K GLKPNRVTFLSVLNACSHGGLV+EGL F KMV E VLPDIKHYGC++DML
Sbjct: 181 YFERMEKAGLKPNRVTFLSVLNACSHGGLVDEGLRCFYKMVNEHGVLPDIKHYGCVVDML 240
Query: 358 GRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417
GR GRLE+AE AL IPSEI +VV+WRTLLGACSFHGNVEMGERVTRKI+EMERGYGGDY
Sbjct: 241 GRTGRLEEAENMALEIPSEIVNVVIWRTLLGACSFHGNVEMGERVTRKIMEMERGYGGDY 300
Query: 418 VLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
VLMYNI AG GR+ DAERLR++M++RNAFK+PG SLV
Sbjct: 301 VLMYNIFAGAGRYEDAERLRKLMNKRNAFKLPGNSLV 337
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449459636|ref|XP_004147552.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Cucumis sativus] gi|449484988|ref|XP_004157038.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 268/450 (59%), Positives = 329/450 (73%), Gaps = 19/450 (4%)
Query: 9 TPNNITTQIHSHLLTTNSLLHHSQLF----NTLLHFYSLAESPQKAFLLYKQLQQIYTHS 64
T + T QI S ++T+ LL+ + F NTLLH Y L Y+ L+Q
Sbjct: 61 TTHKATQQIRSFIITSGLLLNATANFILLCNTLLHCYPL----------YQPLRQF---- 106
Query: 65 HSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF 124
+PP +D+F YSFL+ +CA L G QLHA+ K+GF SHVYV TA++ MY + GF
Sbjct: 107 -PRIPPSYDTFAYSFLLHSCADLELIGPGFQLHALTFKLGFPSHVYVQTAVLRMYAASGF 165
Query: 125 LKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRM 184
L D+ K+FDEMP+R+ VTWNV+ITGLVK+GEL+ AR +F++MP R VVSWT IIDGYTR+
Sbjct: 166 LLDAMKVFDEMPDRSSVTWNVLITGLVKFGELKRARDVFDQMPMRTVVSWTAIIDGYTRL 225
Query: 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244
NR EA LF +MVA EP+E+T+L + PAI G +K CQ +H Y EK+GF D+R
Sbjct: 226 NRHEEAAGLFWRMVAHFGMEPNEVTLLTIFPAISNLGALKLCQSVHAYAEKKGFKVSDVR 285
Query: 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304
+ N LID YAKCGCI SASK+FE++S E KNLVSWTSIISGF MHGMGKEA+E+F M+K
Sbjct: 286 IANSLIDCYAKCGCINSASKVFEEMSAEIKNLVSWTSIISGFTMHGMGKEAMESFEIMEK 345
Query: 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364
G +PNRVTFLS+++ACSHGGLVEEGL FF+KMV E ++ PDI HYG LIDMLGRAGR+E
Sbjct: 346 EGHEPNRVTFLSIVSACSHGGLVEEGLEFFEKMVAEYQIKPDIMHYGSLIDMLGRAGRIE 405
Query: 365 QAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424
+AEK AL IP EI VV+WRTLLGACSFHGNV M ERVT++IL ME YGGDYVLM NI
Sbjct: 406 EAEKIALEIPKEIASVVIWRTLLGACSFHGNVSMAERVTQRILNMEGAYGGDYVLMSNIF 465
Query: 425 AGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
A G++GDAER RR+MD K+PG SLV
Sbjct: 466 AAAGKYGDAERWRRLMDSSKFSKIPGQSLV 495
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356506146|ref|XP_003521848.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1379), Expect = e-149, Method: Compositional matrix adjust.
Identities = 259/447 (57%), Positives = 335/447 (74%), Gaps = 12/447 (2%)
Query: 16 QIHSHLLTTN---SLLHHSQ----LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPL 68
Q+HSH++T+ + H++ LFN ++ YS P +A + Q H H+ L
Sbjct: 61 QVHSHIITSGLFYNPFHNTLTCLLLFNNVIRCYSFGPYPHEALHFFTYTQ----HCHTFL 116
Query: 69 P-PLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 127
P D+F+++FL A ++ + GTQLHA++ KVGFQ HVYV T L+ MY S G L +
Sbjct: 117 TYPSLDTFSFAFLCHASANPNYTHFGTQLHALVFKVGFQFHVYVKTGLLQMYSSSGLLVE 176
Query: 128 SSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRS 187
++++F EM RNLV+WNV ITGL+KWGE+E A S+F +MP R+VVSWT +IDGYTR N+
Sbjct: 177 AAQVFYEMQHRNLVSWNVFITGLIKWGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQP 236
Query: 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLN 247
+AL LFRKM+ + EP+E+T+L + PAI G +K CQ +H Y EKRGF AFD+R+ N
Sbjct: 237 IKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHVYVEKRGFNAFDVRITN 296
Query: 248 CLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL 307
L+D YAKCGCI S S+ F++I +R+NLVSWTS ISGFAM+GMG+EA+E+F M+K GL
Sbjct: 297 ALLDLYAKCGCIASMSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKTGL 356
Query: 308 KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 367
+PN VTFL VL+ACSHGGLVEEG+NFF KMV++ ++PDIKHYGC+IDMLGRAGRLE+AE
Sbjct: 357 RPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRLEEAE 416
Query: 368 KTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427
K AL +P E+ + V+WRTLLGACS H NVE+G+RVT KILEMERG+GGDYVLM NIL GV
Sbjct: 417 KVALQVPHEVANAVMWRTLLGACSVHNNVEIGQRVTNKILEMERGHGGDYVLMSNILVGV 476
Query: 428 GRFGDAERLRRVMDERNAFKVPGCSLV 454
GRF DAERLR V+D+R AFK+PG S V
Sbjct: 477 GRFKDAERLREVIDKRIAFKLPGYSFV 503
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568986|ref|XP_002525463.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535276|gb|EEF36953.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 255/337 (75%), Positives = 289/337 (85%)
Query: 118 MYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGI 177
MY++ GFL ++ FDEMPE+N VTWNVMITGLVKWG+LEFARS F++MP +NVVSWTGI
Sbjct: 1 MYLASGFLGNALLAFDEMPEKNSVTWNVMITGLVKWGKLEFARSFFDDMPEKNVVSWTGI 60
Query: 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG 237
IDGY RMNR E LALFR+MV+ E PSEITILA+LPAI G++++C LIH EKRG
Sbjct: 61 IDGYVRMNRITEGLALFRRMVSFEGIAPSEITILAILPAISGIGELQNCGLIHCLVEKRG 120
Query: 238 FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 297
F + DIRV N +IDTYAKCGCI SAS+ FE+ISVERKNLVSWTSIISGFAMHGMG+EAV+
Sbjct: 121 FNSSDIRVTNSIIDTYAKCGCIVSASRFFEEISVERKNLVSWTSIISGFAMHGMGQEAVK 180
Query: 298 NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357
F M++ GLKPNRVTFLSVLNACSHGGLV EG FF+KMV + +LPDIKHYGCL+DML
Sbjct: 181 RFENMERTGLKPNRVTFLSVLNACSHGGLVAEGHEFFEKMVNQYSILPDIKHYGCLVDML 240
Query: 358 GRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417
GR GRLE+AEK ALGIPSEI + V+WRTLLGACSFHGN E+GERVTRKI+EMERGYGGDY
Sbjct: 241 GRTGRLEEAEKLALGIPSEIVNAVIWRTLLGACSFHGNSEIGERVTRKIMEMERGYGGDY 300
Query: 418 VLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
VLMYNI AGVGRF DAERLR +MDERNAFKVPG SLV
Sbjct: 301 VLMYNIFAGVGRFEDAERLRVLMDERNAFKVPGHSLV 337
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357469567|ref|XP_003605068.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355506123|gb|AES87265.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 256/462 (55%), Positives = 337/462 (72%), Gaps = 16/462 (3%)
Query: 3 ILQNSQTPN-NITTQIHSHLLTTNSLLHHSQ---------LFNTLLHFYSLAESPQKAFL 52
+L N+ +P+ + Q+HS ++T+ SL HH LFN L+ YSL+ P ++
Sbjct: 39 LLLNNPSPHYHFLQQLHSQIITS-SLFHHYPFHNNLTSLLLFNNLIRSYSLSLFPHESLK 97
Query: 53 LYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVN 112
+ THS S DSFT +FL CA L + G LH ++ K+GF++HV+V
Sbjct: 98 FFTHTLNNLTHSLS-----LDSFTLTFLAHACANLDTTHFGFHLHCIVCKMGFENHVFVQ 152
Query: 113 TALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV 172
T L++MY + GFL D++++F EMP+RN VTWNV I+GL+KWG+LEFARS+F+ M R+VV
Sbjct: 153 TGLLHMYSNWGFLVDAAQVFGEMPDRNTVTWNVFISGLIKWGQLEFARSVFDRMVVRSVV 212
Query: 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGY 232
SWT +IDGYTRMN+ +ALALFRKM+ + EP+E+T+L V PAI G+VK C+ +HGY
Sbjct: 213 SWTLVIDGYTRMNKPLKALALFRKMIEVDGIEPNEVTLLTVFPAIAHLGNVKMCESVHGY 272
Query: 233 GEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMG 292
EKRGF A DIR++N LID YAKCGCI SAS LF ++ R+N VSW S++SG+A GM
Sbjct: 273 VEKRGFNAVDIRIVNALIDLYAKCGCIESASGLFSEMPDWRRNSVSWNSVMSGYATFGMV 332
Query: 293 KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGC 352
+EAV+ F +M+K G++PN V FLS+L+ACSH GLVEEGL FF KMV + ++PDIKHYGC
Sbjct: 333 REAVDTFEKMEKAGVRPNHVAFLSILSACSHSGLVEEGLEFFGKMVNDYGLVPDIKHYGC 392
Query: 353 LIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412
+IDMLGRAGRL +AEK AL +P E + V+WRTLLGACS H NVE+G+RVT+KILEME+G
Sbjct: 393 VIDMLGRAGRLGEAEKVALEVPHEAANDVIWRTLLGACSVHDNVEIGKRVTKKILEMEKG 452
Query: 413 YGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
+GGDYVLM NI A VGRF D ERLR ++D+RN FK+PG S+V
Sbjct: 453 HGGDYVLMSNIFASVGRFKDVERLREMIDKRNVFKLPGYSIV 494
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356554965|ref|XP_003545811.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09220, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 256/447 (57%), Positives = 333/447 (74%), Gaps = 12/447 (2%)
Query: 16 QIHSHLLTTN---SLLHHSQ----LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPL 68
Q+HSH++T+ + H++ LFN ++ YS P +A + Q H H L
Sbjct: 75 QVHSHIITSGLFYNPFHNTLTCLLLFNNVIRCYSFGPYPHEALHFFTYTQ----HCHIFL 130
Query: 69 P-PLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKD 127
P D+F+++FL A ++ + GTQLHA+I KVGFQ VYV T L+ MY S G L +
Sbjct: 131 TYPSLDTFSFAFLCHASANPNYTHFGTQLHALIFKVGFQFQVYVQTRLLQMYSSSGLLVE 190
Query: 128 SSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRS 187
++++F EM RNLV+WNV ITGL+K GE+E A S+F +MP R+VVSWT +IDGYTR N+
Sbjct: 191 AAQVFYEMQHRNLVSWNVFITGLIKLGEVELACSVFNQMPARSVVSWTLVIDGYTRRNQP 250
Query: 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLN 247
+AL LFRKM+ + EP+E+T+L + PAI G +K CQ +HGY EKRGF AFD+R+ N
Sbjct: 251 IKALTLFRKMIEVDGIEPTEVTLLTIFPAIANIGCIKICQSVHGYVEKRGFNAFDVRITN 310
Query: 248 CLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL 307
L+D YAKCGCI S S+ F++I +R+NLVSWTS ISGFAM+GMG+EA+E+F M+K GL
Sbjct: 311 ALLDLYAKCGCIASVSRFFQEIPDQRRNLVSWTSTISGFAMNGMGREALESFESMEKAGL 370
Query: 308 KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAE 367
+PN VTFL VL+ACSHGGLVEEG+NFF KMV++ ++PDIKHYGC+IDMLGRAGRLE+AE
Sbjct: 371 RPNHVTFLGVLSACSHGGLVEEGINFFVKMVKDWCLVPDIKHYGCVIDMLGRAGRLEEAE 430
Query: 368 KTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427
K AL +P E+ + V+WRTLLGAC+ H NVE+G+RVT KILEMERG+GGDYVLM NIL GV
Sbjct: 431 KIALQVPHEVANAVMWRTLLGACNVHNNVEIGQRVTNKILEMERGHGGDYVLMSNILVGV 490
Query: 428 GRFGDAERLRRVMDERNAFKVPGCSLV 454
GRF DAE+LR ++D+R AFK+PG S V
Sbjct: 491 GRFKDAEKLREMIDKRIAFKLPGYSFV 517
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147860607|emb|CAN79717.1| hypothetical protein VITISV_027522 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 260/427 (60%), Positives = 310/427 (72%), Gaps = 8/427 (1%)
Query: 9 TPNNITTQIHSHLLTTNSLLHHSQL--FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHS 66
T + Q+HSHL+TT + H + +N LL YSL PQ+AFLL++ L+ H
Sbjct: 27 TRRSAMQQLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLRL-----HH 81
Query: 67 PLPPLFDSFTYSFLI-RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125
PPL + + CA L H G QLHA+ K+GF+ HVYV+T L+N+Y + G
Sbjct: 82 VYPPLSFDSFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAF 141
Query: 126 KDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMN 185
++ ++FDEMP RN VTWNV ITGL KWGEL A SL +EMP VVSWT IIDGYTRMN
Sbjct: 142 LEAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMN 201
Query: 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRV 245
+ +ALALF M E +P+EIT+LA+ PAI G ++ CQLIH YGEK G A DIR+
Sbjct: 202 QPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRI 261
Query: 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305
L+DTYAKCGCI SAS +F +I+ + +NLVSWTSIIS FAMHGM KEA+ENF RMQK
Sbjct: 262 RTSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKE 321
Query: 306 GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365
LKPNR+TFLSVLNACSHGGLVEEGL F KMV EC++ PD+KHYGCLIDMLGRAGRL++
Sbjct: 322 CLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDE 381
Query: 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425
AEK AL IP + +VV+WRTLLGACSFHGNVEMG RVTRKILEMER YGGDYVL+ NI A
Sbjct: 382 AEKMALEIPDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFA 441
Query: 426 GVGRFGD 432
GVGR D
Sbjct: 442 GVGRIKD 448
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|302144057|emb|CBI23162.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 512 bits (1318), Expect = e-142, Method: Compositional matrix adjust.
Identities = 258/423 (60%), Positives = 308/423 (72%), Gaps = 8/423 (1%)
Query: 9 TPNNITTQIHSHLLTTNSLLHHSQL--FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHS 66
T + Q+HSHL+TT + H + +N LL YSL PQ+AFLL++ L+ H
Sbjct: 27 TRRSAMQQLHSHLITTGAHSHCMDVTSWNVLLRHYSLGIFPQEAFLLFRHLRL-----HH 81
Query: 67 PLPPLFDSFTYSFLI-RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL 125
PPL + + CA L H G QLHA+ K+GF+ HVYV+T L+N+Y + G
Sbjct: 82 VYPPLSFDSFSFSFLLKACANLQHREGGLQLHALTLKLGFEFHVYVHTVLLNVYAACGAF 141
Query: 126 KDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMN 185
++ ++FDEMP RN VTWNV ITGL KWGEL A SL +EMP VVSWT IIDGYTRMN
Sbjct: 142 LEAKQVFDEMPVRNSVTWNVFITGLAKWGELHLACSLLDEMPRPTVVSWTTIIDGYTRMN 201
Query: 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRV 245
+ +ALALF M E +P+EIT+LA+ PAI G ++ CQLIH YGEK G A DIR+
Sbjct: 202 QPKQALALFLTMFLDEGIKPTEITLLAIFPAISNLGALEICQLIHTYGEKSGLNASDIRI 261
Query: 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305
L+DTYAKCGCI SAS +F +I+ + +NLVSWTSIIS FAMHGM KEA+ENF RMQK
Sbjct: 262 RTSLLDTYAKCGCIESASGVFGEIAAKGRNLVSWTSIISAFAMHGMAKEALENFERMQKE 321
Query: 306 GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365
LKPNR+TFLSVLNACSHGGLVEEGL F KMV EC++ PD+KHYGCLIDMLGRAGRL++
Sbjct: 322 CLKPNRITFLSVLNACSHGGLVEEGLKLFTKMVNECQISPDVKHYGCLIDMLGRAGRLDE 381
Query: 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425
AEK AL IP + +VV+WRTLLGACSFHGNVEMG RVTRKILEMER YGGDYVL+ NI A
Sbjct: 382 AEKMALEIPDYVVNVVIWRTLLGACSFHGNVEMGARVTRKILEMERKYGGDYVLLSNIFA 441
Query: 426 GVG 428
GVG
Sbjct: 442 GVG 444
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 454 | ||||||
| TAIR|locus:2054789 | 534 | MEF21 "mitochondrial editing f | 0.903 | 0.767 | 0.386 | 2.1e-77 | |
| TAIR|locus:2154855 | 620 | AT5G66520 "AT5G66520" [Arabido | 0.898 | 0.658 | 0.382 | 5e-76 | |
| TAIR|locus:2161018 | 530 | AT5G56310 "AT5G56310" [Arabido | 0.907 | 0.777 | 0.372 | 2.1e-75 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.894 | 0.642 | 0.375 | 2.5e-72 | |
| TAIR|locus:505006130 | 970 | AT1G18485 [Arabidopsis thalian | 0.691 | 0.323 | 0.367 | 7.2e-72 | |
| TAIR|locus:2154389 | 646 | LPA66 "LOW PSII ACCUMULATION 6 | 0.905 | 0.636 | 0.360 | 8.6e-72 | |
| TAIR|locus:2159602 | 511 | AT5G08510 "AT5G08510" [Arabido | 0.898 | 0.798 | 0.375 | 1.4e-71 | |
| TAIR|locus:2085874 | 472 | MEF20 "AT3G18970" [Arabidopsis | 0.660 | 0.635 | 0.403 | 1.1e-70 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.707 | 0.499 | 0.406 | 1.2e-69 | |
| TAIR|locus:2041198 | 681 | SLO1 "SLOW GROWTH 1" [Arabidop | 0.898 | 0.599 | 0.342 | 2.1e-68 |
| TAIR|locus:2054789 MEF21 "mitochondrial editing factor 21" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 163/422 (38%), Positives = 259/422 (61%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
L+N+++ Y+ +YKQL + LP D FT+ F+ ++CA+L L
Sbjct: 75 LYNSIIRAYTHNSLYCDVIRIYKQLLR----KSFELP---DRFTFPFMFKSCASLGSCYL 127
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G Q+H + K G + HV AL++MY+ L D+ K+FDEM ER++++WN +++G +
Sbjct: 128 GKQVHGHLCKFGPRFHVVTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYAR 187
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G+++ A+ LF M + +VSWT +I GYT + EA+ FR+M EP EI++++
Sbjct: 188 LGQMKKAKGLFHLMLDKTIVSWTAMISGYTGIGCYVEAMDFFREMQLAGI-EPDEISLIS 246
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
VLP+ Q G ++ + IH Y E+RGF V N LI+ Y+KCG I A +LF + E
Sbjct: 247 VLPSCAQLGSLELGKWIHLYAERRGFLK-QTGVCNALIEMYSKCGVISQAIQLFGQM--E 303
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332
K+++SW+++ISG+A HG A+E F MQ+ +KPN +TFL +L+ACSH G+ +EGL
Sbjct: 304 GKDVISWSTMISGYAYHGNAHGAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLR 363
Query: 333 FFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392
+FD M ++ ++ P I+HYGCLID+L RAG+LE+A + +P + D +W +LL +C
Sbjct: 364 YFDMMRQDYQIEPKIEHYGCLIDVLARAGKLERAVEITKTMPMK-PDSKIWGSLLSSCRT 422
Query: 393 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCS 452
GN+++ ++E+E G+YVL+ NI A +G++ D RLR+++ N K PG S
Sbjct: 423 PGNLDVALVAMDHLVELEPEDMGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGS 482
Query: 453 LV 454
L+
Sbjct: 483 LI 484
|
|
| TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
Identities = 162/423 (38%), Positives = 261/423 (61%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
L+N ++ +S ++ P+++ LLY+++ S +P +++T+ L++ C+ LS
Sbjct: 82 LWNLMIRGFSCSDEPERSLLLYQRM----LCSSAP----HNAYTFPSLLKACSNLSAFEE 133
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
TQ+HA I+K+G+++ VY +L+N Y G K + LFD +PE + V+WN +I G VK
Sbjct: 134 TTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVK 193
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G+++ A +LF +M +N +SWT +I GY + + + EAL LF +M + EP +++
Sbjct: 194 AGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSD-VEPDNVSLAN 252
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC-LIDTYAKCGCIFSASKLFEDISV 271
L A Q G ++ + IH Y K D VL C LID YAKCG + A ++F++I
Sbjct: 253 ALSACAQLGALEQGKWIHSYLNKTRIR-MD-SVLGCVLIDMYAKCGEMEEALEVFKNI-- 308
Query: 272 ERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGL 331
++K++ +WT++ISG+A HG G+EA+ F MQK+G+KPN +TF +VL ACS+ GLVEEG
Sbjct: 309 KKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGK 368
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
F M + + P I+HYGC++D+LGRAG L++A++ +P + + V+W LL AC
Sbjct: 369 LIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLK-PNAVIWGALLKACR 427
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
H N+E+GE + ++ ++ +GG YV NI A ++ A RR+M E+ KVPGC
Sbjct: 428 IHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGC 487
Query: 452 SLV 454
S +
Sbjct: 488 STI 490
|
|
| TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
Identities = 158/424 (37%), Positives = 255/424 (60%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
L NT++ SL + P + ++++ P D+FT+ F+++ +S
Sbjct: 80 LHNTMIRALSLLDEPNAHSIAITVYRKLWALCAKP-----DTFTFPFVLKIAVRVSDVWF 134
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G Q+H + GF S V+V T L+ MY S G L D+ K+FDEM +++ WN ++ G K
Sbjct: 135 GRQIHGQVVVFGFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGK 194
Query: 153 WGELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITI 210
GE++ ARSL E MPC RN VSWT +I GY + R++EA+ +F++M+ E EP E+T+
Sbjct: 195 VGEMDEARSLLEMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLM-ENVEPDEVTL 253
Query: 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270
LAVL A G ++ + I Y + RG + + N +ID YAK G I A +FE
Sbjct: 254 LAVLSACADLGSLELGERICSYVDHRGMNRA-VSLNNAVIDMYAKSGNITKALDVFE--C 310
Query: 271 VERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330
V +N+V+WT+II+G A HG G EA+ F RM K G++PN VTF+++L+ACSH G V+ G
Sbjct: 311 VNERNVVTWTTIIAGLATHGHGAEALAMFNRMVKAGVRPNDVTFIAILSACSHVGWVDLG 370
Query: 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390
F+ M + + P+I+HYGC+ID+LGRAG+L +A++ +P + + +W +LL A
Sbjct: 371 KRLFNSMRSKYGIHPNIEHYGCMIDLLGRAGKLREADEVIKSMPFK-ANAAIWGSLLAAS 429
Query: 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPG 450
+ H ++E+GER +++++E G+Y+L+ N+ + +GR+ ++ +R +M K+ G
Sbjct: 430 NVHHDLELGERALSELIKLEPNNSGNYMLLANLYSNLGRWDESRMMRNMMKGIGVKKMAG 489
Query: 451 CSLV 454
S +
Sbjct: 490 ESSI 493
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 159/423 (37%), Positives = 250/423 (59%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
LF ++ S+ +AFLLY QL S + P + FT+S L+++C+T S
Sbjct: 97 LFTAAINTASINGLKDQAFLLYVQLLS------SEINP--NEFTFSSLLKSCSTKS---- 144
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
G +H + K G YV T LV++Y G + + K+FD MPER+LV+ MIT K
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAK 204
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G +E AR+LF+ M R++VSW +IDGY + N+AL LF+K++A +P EIT++A
Sbjct: 205 QGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVA 264
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272
L A Q G +++ + IH + K +++V LID Y+KCG + A +F D
Sbjct: 265 ALSACSQIGALETGRWIHVF-VKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFND--TP 321
Query: 273 RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV-GLKPNRVTFLSVLNACSHGGLVEEGL 331
RK++V+W ++I+G+AMHG ++A+ F MQ + GL+P +TF+ L AC+H GLV EG+
Sbjct: 322 RKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGI 381
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
F+ M +E + P I+HYGCL+ +LGRAG+L++A +T + + D V+W ++LG+C
Sbjct: 382 RIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMD-ADSVLWSSVLGSCK 440
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
HG+ +G+ + ++ + G YVL+ NI A VG + ++R +M E+ K PG
Sbjct: 441 LHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGI 500
Query: 452 SLV 454
S +
Sbjct: 501 STI 503
|
|
| TAIR|locus:505006130 AT1G18485 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 552 (199.4 bits), Expect = 7.2e-72, Sum P(3) = 7.2e-72
Identities = 117/318 (36%), Positives = 189/318 (59%)
Query: 137 ERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRK 196
ER+L + +++ + GEL ++LF+ M +++VSW +I GY + + AL +FR+
Sbjct: 528 ERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ 587
Query: 197 MVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256
MV + I+++ V A ++ + H Y K D + LID YAK
Sbjct: 588 MVLYGI-QLCGISMMPVFGACSLLPSLRLGREAHAYALKH-LLEDDAFIACSLIDMYAKN 645
Query: 257 GCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316
G I +SK+F + + K+ SW ++I G+ +HG+ KEA++ F MQ+ G P+ +TFL
Sbjct: 646 GSITQSSKVFNGL--KEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLG 703
Query: 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376
VL AC+H GL+ EGL + D+M + P++KHY C+IDMLGRAG+L++A + SE
Sbjct: 704 VLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSE 763
Query: 377 ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERL 436
DV +W++LL +C H N+EMGE+V K+ E+E +YVL+ N+ AG+G++ D ++
Sbjct: 764 EADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKV 823
Query: 437 RRVMDERNAFKVPGCSLV 454
R+ M+E + K GCS +
Sbjct: 824 RQRMNEMSLRKDAGCSWI 841
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| TAIR|locus:2154389 LPA66 "LOW PSII ACCUMULATION 66" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 157/435 (36%), Positives = 261/435 (60%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+NT++ +S ++ KA + ++ + + P + FT+ +++ CA G
Sbjct: 93 WNTIIRGFSESDE-DKALIAITLFYEMMSDEF--VEP--NRFTFPSVLKACAKTGKIQEG 147
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDE---------MPERN----- 139
Q+H + K GF +V + LV MYV GF+KD+ LF + M +R
Sbjct: 148 KQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGE 207
Query: 140 LVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVA 199
+V WNVMI G ++ G+ + AR LF++M R+VVSW +I GY+ +A+ +FR+M
Sbjct: 208 IVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKK 267
Query: 200 CEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259
+ P+ +T+++VLPAI + G ++ + +H Y E G D+ + + LID Y+KCG I
Sbjct: 268 GDI-RPNYVTLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDV-LGSALIDMYSKCGII 325
Query: 260 FSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319
A +FE + R+N+++W+++I+GFA+HG +A++ F +M++ G++P+ V ++++L
Sbjct: 326 EKAIHVFERLP--RENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD 379
ACSHGGLVEEG +F +MV + P I+HYGC++D+LGR+G L++AE+ L +P + D
Sbjct: 384 ACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDD 443
Query: 380 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439
V+ W+ LLGAC GNVEMG+RV +++M G YV + N+ A G + + +R
Sbjct: 444 VI-WKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLR 502
Query: 440 MDERNAFKVPGCSLV 454
M E++ K PGCSL+
Sbjct: 503 MKEKDIRKDPGCSLI 517
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| TAIR|locus:2159602 AT5G08510 "AT5G08510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
Identities = 158/421 (37%), Positives = 242/421 (57%)
Query: 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNL 92
L+N L+ Y + P ++ +LY L S L P T++F+ A+ S
Sbjct: 49 LYNKLIQAYYVHHQPHESIVLYNLL------SFDGLRP--SHHTFNFIFAASASFSSARP 100
Query: 93 GTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152
LH+ + GF+S + T L+ Y LG L + ++FDEM +R++ WN MITG +
Sbjct: 101 LRLLHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQR 160
Query: 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA 212
G+++ A LF+ MP +NV SWT +I G+++ +EAL +F M + +P+ IT+++
Sbjct: 161 RGDMKAAMELFDSMPRKNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVS 220
Query: 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFD-IRVLNCLIDTYAKCGCIFSASKLFEDISV 271
VLPA G+++ + + GY + GF FD I V N I+ Y+KCG I A +LFE++
Sbjct: 221 VLPACANLGELEIGRRLEGYARENGF--FDNIYVCNATIEMYSKCGMIDVAKRLFEELGN 278
Query: 272 ERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGL 331
+R NL SW S+I A HG EA+ F +M + G KP+ VTF+ +L AC HGG+V +G
Sbjct: 279 QR-NLCSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQ 337
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391
F M E ++ P ++HYGC+ID+LGR G+L++A +P + D VVW TLLGACS
Sbjct: 338 ELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMK-PDAVVWGTLLGACS 396
Query: 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451
FHGNVE+ E + + ++E G+ V+M NI A ++ R+R++M + K G
Sbjct: 397 FHGNVEIAEIASEALFKLEPTNPGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGY 456
Query: 452 S 452
S
Sbjct: 457 S 457
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| TAIR|locus:2085874 MEF20 "AT3G18970" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 591 (213.1 bits), Expect = 1.1e-70, Sum P(2) = 1.1e-70
Identities = 128/317 (40%), Positives = 193/317 (60%)
Query: 152 KWGELEFARSLFEEMPCRNVVSWTGIIDGY-TRMNRSN----EALALFRKMVAC-EYTEP 205
K G+L +AR +F+EMP R V+W +I GY + ++ N +A+ LFR+ C P
Sbjct: 159 KNGDLRYARKVFDEMPERTSVTWNAMIGGYCSHKDKGNHNARKAMVLFRRFSCCGSGVRP 218
Query: 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA-FDIRVLNCLIDTYAKCGCIFSASK 264
++ T++ VL AI Q G ++ L+HGY EK GFT D+ + L+D Y+KCGC+ +A
Sbjct: 219 TDTTMVCVLSAISQTGLLEIGSLVHGYIEKLGFTPEVDVFIGTALVDMYSKCGCLNNAFS 278
Query: 265 LFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324
+FE + V KN+ +WTS+ +G A++G G E RM + G+KPN +TF S+L+A H
Sbjct: 279 VFELMKV--KNVFTWTSMATGLALNGRGNETPNLLNRMAESGIKPNEITFTSLLSAYRHI 336
Query: 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWR 384
GLVEEG+ F M V P I+HYGC++D+LG+AGR+++A + L +P + D ++ R
Sbjct: 337 GLVEEGIELFKSMKTRFGVTPVIEHYGCIVDLLGKAGRIQEAYQFILAMPIK-PDAILLR 395
Query: 385 TLLGACSFHGNVEMGERVTRKILEMERG---YGG----DYVLMYNILAGVGRFGDAERLR 437
+L ACS +G MGE + + +LE+ER G DYV + N+LA G++ + E+LR
Sbjct: 396 SLCNACSIYGETVMGEEIGKALLEIEREDEKLSGSECEDYVALSNVLAHKGKWVEVEKLR 455
Query: 438 RVMDERNAFKVPGCSLV 454
+ M ER PG S V
Sbjct: 456 KEMKERRIKTRPGYSFV 472
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| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 670 (240.9 bits), Expect = 1.2e-69, Sum P(2) = 1.2e-69
Identities = 132/325 (40%), Positives = 209/325 (64%)
Query: 130 KLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNE 189
++FD+M RN +WNVM+ G +K GELE A+ +F EMP R+ VSW+ +I G NE
Sbjct: 193 EIFDKMLVRNHTSWNVMLAGYIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNE 252
Query: 190 ALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249
+ FR++ + P+E+++ VL A Q+G + +++HG+ EK G++ + + V N L
Sbjct: 253 SFLYFRELQRAGMS-PNEVSLTGVLSACSQSGSFEFGKILHGFVEKAGYS-WIVSVNNAL 310
Query: 250 IDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP 309
ID Y++CG + A +FE + E++ +VSWTS+I+G AMHG G+EAV F M G+ P
Sbjct: 311 IDMYSRCGNVPMARLVFEGMQ-EKRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTP 369
Query: 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKT 369
+ ++F+S+L+ACSH GL+EEG ++F +M + P+I+HYGC++D+ GR+G+L++A
Sbjct: 370 DGISFISLLHACSHAGLIEEGEDYFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDF 429
Query: 370 ALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGR 429
+P T +VWRTLLGACS HGN+E+ E+V +++ E++ GD VL+ N A G+
Sbjct: 430 ICQMPIPPT-AIVWRTLLGACSSHGNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGK 488
Query: 430 FGDAERLRRVMDERNAFKVPGCSLV 454
+ D +R+ M + K SLV
Sbjct: 489 WKDVASIRKSMIVQRIKKTTAWSLV 513
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| TAIR|locus:2041198 SLO1 "SLOW GROWTH 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 144/421 (34%), Positives = 239/421 (56%)
Query: 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93
+N L++ Y +KA +YK ++ S P D T L+ +C+ L N G
Sbjct: 225 WNCLINGYKKIGEAEKAIYVYKLME-----SEGVKP---DDVTMIGLVSSCSMLGDLNRG 276
Query: 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW 153
+ + + + G + + + AL++M+ G + ++ ++FD + +R +V+W MI+G +
Sbjct: 277 KEFYEYVKENGLRMTIPLVNALMDMFSKCGDIHEARRIFDNLEKRTIVSWTTMISGYARC 336
Query: 154 GELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV 213
G L+ +R LF++M ++VV W +I G + R +ALALF++M T+P EIT++
Sbjct: 337 GLLDVSRKLFDDMEEKDVVLWNAMIGGSVQAKRGQDALALFQEMQTSN-TKPDEITMIHC 395
Query: 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273
L A Q G + IH Y EK + ++ + L+D YAKCG I A +F I +
Sbjct: 396 LSACSQLGALDVGIWIHRYIEKYSLS-LNVALGTSLVDMYAKCGNISEALSVFHGI--QT 452
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333
+N +++T+II G A+HG A+ F M G+ P+ +TF+ +L+AC HGG+++ G ++
Sbjct: 453 RNSLTYTAIIGGLALHGDASTAISYFNEMIDAGIAPDEITFIGLLSACCHGGMIQTGRDY 512
Query: 334 FDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH 393
F +M + P +KHY ++D+LGRAG LE+A++ +P E D VW LL C H
Sbjct: 513 FSQMKSRFNLNPQLKHYSIMVDLLGRAGLLEEADRLMESMPME-ADAAVWGALLFGCRMH 571
Query: 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453
GNVE+GE+ +K+LE++ G YVL+ + + DA+R RR+M+ER K+PGCS
Sbjct: 572 GNVELGEKAAKKLLELDPSDSGIYVLLDGMYGEANMWEDAKRARRMMNERGVEKIPGCSS 631
Query: 454 V 454
+
Sbjct: 632 I 632
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q680Z7 | PPR24_ARATH | No assigned EC number | 0.5581 | 0.9911 | 0.8928 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | fgenesh4_pg.C_LG_XIII000263 | hypothetical protein (337 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 454 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-75 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-62 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-39 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-39 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-30 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-30 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 7e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.004 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 252 bits (644), Expect = 2e-75
Identities = 138/409 (33%), Positives = 211/409 (51%), Gaps = 48/409 (11%)
Query: 47 PQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQ 106
P KA Y ++Q + SP D T + ++ CA L ++G +LH + + G
Sbjct: 370 PDKALETYALMEQ---DNVSP-----DEITIASVLSACACLGDLDVGVKLHELAERKGLI 421
Query: 107 SHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEM 166
S+V V AL+ MY K D+ A +F +
Sbjct: 422 SYVVVANALIEMY-------SKCKCIDK------------------------ALEVFHNI 450
Query: 167 PCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226
P ++V+SWT II G NR EAL FR+M+ +P+ +T++A L A + G +
Sbjct: 451 PEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCG 508
Query: 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGF 286
+ IH + + G FD + N L+D Y +CG + A F + K++VSW +++G+
Sbjct: 509 KEIHAHVLRTGI-GFDGFLPNALLDLYVRCGRMNYAWNQF---NSHEKDVVSWNILLTGY 564
Query: 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD 346
HG G AVE F RM + G+ P+ VTF+S+L ACS G+V +GL +F M E+ + P+
Sbjct: 565 VAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624
Query: 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRK 405
+KHY C++D+LGRAG+L +A +P IT D VW LL AC H +VE+GE +
Sbjct: 625 LKHYACVVDLLGRAGKLTEAYNFINKMP--ITPDPAVWGALLNACRIHRHVELGELAAQH 682
Query: 406 ILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
I E++ G Y+L+ N+ A G++ + R+R+ M E PGCS V
Sbjct: 683 IFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 213 bits (545), Expect = 3e-62
Identities = 121/408 (29%), Positives = 197/408 (48%), Gaps = 44/408 (10%)
Query: 47 PQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQ 106
++AF L++++ + + + + T+ ++R A L G QLH + K G
Sbjct: 205 YREAFALFREMWEDGSDA--------EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVV 256
Query: 107 SHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEM 166
+V+ AL++MY G ++D+ +FD MPE+ V WN M+ G G E A L+ EM
Sbjct: 257 GDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEM 316
Query: 167 PCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226
+ VS ID +T + + +F ++ E+ + + ++
Sbjct: 317 -RDSGVS----IDQFT----FSIMIRIFSRLALLEHAKQAHAGLI--------------- 352
Query: 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGF 286
+ GF DI L+D Y+K G + A +F+ + RKNL+SW ++I+G+
Sbjct: 353 --------RTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMP--RKNLISWNALIAGY 401
Query: 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD 346
HG G +AVE F RM G+ PN VTFL+VL+AC + GL E+G F M E + P
Sbjct: 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461
Query: 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKI 406
HY C+I++LGR G L++A P V +W LL AC H N+E+G K+
Sbjct: 462 AMHYACMIELLGREGLLDEAYAMIRRAPF-KPTVNMWAALLTACRIHKNLELGRLAAEKL 520
Query: 407 LEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454
M +YV++ N+ GR +A ++ + + P C+ +
Sbjct: 521 YGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 3e-39
Identities = 106/359 (29%), Positives = 162/359 (45%), Gaps = 42/359 (11%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
D T + +I C L LG ++H + K GF V V +L+ MY+SLG ++ K+F
Sbjct: 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192
M ++ V+W MI+G K G + A ++ Y M + N
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKA------------------LETYALMEQDN---- 384
Query: 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252
P EITI +VL A GD+ +H E++G ++ + V N LI+
Sbjct: 385 ----------VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV-VANALIEM 433
Query: 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV 312
Y+KC CI A ++F +I K+++SWTSII+G ++ EA+ F +M + LKPN V
Sbjct: 434 YSKCKCIDKALEVFHNIP--EKDVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSV 490
Query: 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG 372
T ++ L+AC+ G + G V + D L+D+ R GR+ A
Sbjct: 491 TLIAALSACARIGALMCGKE-IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ--- 546
Query: 373 IPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431
S DVV W LL HG M + +++E G D V ++L R G
Sbjct: 547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEVTFISLLCACSRSG 603
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 8e-39
Identities = 94/326 (28%), Positives = 158/326 (48%), Gaps = 39/326 (11%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
D +T+ ++RTC + G ++HA + + GF+ V V AL+ MYV G + + +F
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192
D MP R+ ++WN MI+G FE C E L
Sbjct: 246 DRMPRRDCISWNAMISG------------YFENGEC-------------------LEGLE 274
Query: 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252
LF M +P +TI +V+ A GD + + +HGY K GF A D+ V N LI
Sbjct: 275 LFFTMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQM 332
Query: 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV 312
Y G A K+F +E K+ VSWT++ISG+ +G+ +A+E + M++ + P+ +
Sbjct: 333 YLSLGSWGEAEKVFS--RMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEI 390
Query: 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG 372
T SVL+AC+ G ++ G+ ++ E ++ + LI+M + +++A +
Sbjct: 391 TIASVLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHN 449
Query: 373 IPSEITDVVVWRTLL-GACSFHGNVE 397
IP + DV+ W +++ G + E
Sbjct: 450 IPEK--DVISWTSIIAGLRLNNRCFE 473
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-30
Identities = 90/346 (26%), Positives = 143/346 (41%), Gaps = 66/346 (19%)
Query: 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF 132
+ TY L+ C L ++ + GF+ Y+ ++ M+V G L D
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLID----- 176
Query: 133 DEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA 192
AR LF+EMP RN+ SW II G EA A
Sbjct: 177 --------------------------ARRLFDEMPERNLASWGTIIGGLVDAGNYREAFA 210
Query: 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC-LID 251
LFR+M + ++ T + +L A G ++ Q +H K G ++C LID
Sbjct: 211 LFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG--VVGDTFVSCALID 267
Query: 252 TYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR 311
Y+KCG I A +F+ + K V+W S+++G+A+HG +EA+ + M+ G+ ++
Sbjct: 268 MYSKCGDIEDARCVFD--GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 312 VTFLSVLNACS-----------HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA 360
TF ++ S H GL+ G DI L+D+ +
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL------------DIVANTALVDLYSKW 373
Query: 361 GRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGN----VEMGERV 402
GR+E A +P +++ W L+ HG VEM ER+
Sbjct: 374 GRMEDARNVFDRMP--RKNLISWNALIAGYGNHGRGTKAVEMFERM 417
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 4e-30
Identities = 96/408 (23%), Positives = 161/408 (39%), Gaps = 62/408 (15%)
Query: 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHF----------------YSLAESPQKAF 51
Q P+ +L S + L H + S +A
Sbjct: 2 QPPHFYLNPGKPNLFQLASHKAPNVLPYWNFHGRKRSRGLSVAASSSSSTHDSNSQLRAL 61
Query: 52 LLYKQLQQIYTHSHS----PLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107
+ QL+Q S +P D Y L R C G+++ +
Sbjct: 62 CSHGQLEQALKLLESMQELRVPV--DEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMP 167
V + A+++M+V G L + +F +MPER+L +WNV++ G K G + A L+ M
Sbjct: 120 GVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRM- 178
Query: 168 CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQ 227
W G+ R V YT P + +P + + +V +
Sbjct: 179 -----LWAGV-----------------RPDV---YTFPCVLRTCGGIPDLARGREVHAHV 213
Query: 228 LIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFA 287
+ G+ D+ V+N LI Y KCG + SA +F+ + R++ +SW ++ISG+
Sbjct: 214 VRFGFEL-------DVDVVNALITMYVKCGDVVSARLVFD--RMPRRDCISWNAMISGYF 264
Query: 288 MHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF-FDKMVEECEVLPD 346
+G E +E F M+++ + P+ +T SV++AC L +E L V + D
Sbjct: 265 ENGECLEGLELFFTMRELSVDPDLMTITSVISAC--ELLGDERLGREMHGYVVKTGFAVD 322
Query: 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHG 394
+ LI M G +AEK + E D V W ++ +G
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRM--ETKDAVSWTAMISGYEKNG 368
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 44/175 (25%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 234 EKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGM 291
++ G A D ++ LI T AK G + + ++F ++ N+ ++ ++I G A G
Sbjct: 464 QEAGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522
Query: 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECE-VLPDIKHY 350
+A +G M+ +KP+RV F ++++AC G V+ + +M E + PD
Sbjct: 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITV 582
Query: 351 GCLIDMLGRAGRLEQA--------EKTALGIPSEITDVVVWRTLLGACSFHGNVE 397
G L+ AG++++A E G P T V +CS G+ +
Sbjct: 583 GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV------NSCSQKGDWD 631
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 52.4 bits (127), Expect = 3e-09
Identities = 14/50 (28%), Positives = 30/50 (60%)
Query: 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323
++V++ ++I G+ G +EA++ F M+K G+KPN T+ +++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 139 NLVTWNVMITGLVKWGELEFARSLFEEMPCR----NVVSWTGIIDGY 181
++VT+N +I G K G++E A LF EM R NV +++ +IDG
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 13/171 (7%)
Query: 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFG 300
V N LI + G + A + ++ E + ++ +++ A G A E +
Sbjct: 544 VFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603
Query: 301 RMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA 360
+ + +K + +N+CS G + L+ +D M ++ V PD + L+D+ G A
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHA 662
Query: 361 GRLEQA-----EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKI 406
G L++A + GI V + +L+GACS N + + I
Sbjct: 663 GDLDKAFEILQDARKQGIKLGT---VSYSSLMGACSNAKNWKKALELYEDI 710
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 37/348 (10%)
Query: 76 TYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEM 135
T++ L+ CA+ + ++ ++ + G ++ + T L++ G + ++F EM
Sbjct: 439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 136 P----ERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNV----VSWTGIIDGYTRMNRS 187
E N+ T+ +I G + G++ A + M +NV V + +I +
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 188 NEALALFRKMVACEYT--EPSEITILAVLPAIWQNGDVKSC----QLIHGYGEKRGFTAF 241
+ A + +M A E +P IT+ A++ A G V Q+IH Y K +
Sbjct: 559 DRAFDVLAEMKA-ETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVY 617
Query: 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVS---WTSIISGFAMH-GMGKEAVE 297
I V +C ++ G A +++D+ +K + + S + A H G +A E
Sbjct: 618 TIAVNSC-----SQKGDWDFALSIYDDMK--KKGVKPDEVFFSALVDVAGHAGDLDKAFE 670
Query: 298 NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357
+K G+K V++ S++ ACS+ ++ L ++ ++ ++ P + LI L
Sbjct: 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED-IKSIKLRPTVSTMNALITAL 729
Query: 358 GRAGRLEQA-----EKTALGI-PSEITDVVVWRTLLGACSFHGNVEMG 399
+L +A E LG+ P+ IT + LL A + ++G
Sbjct: 730 CEGNQLPKALEVLSEMKRLGLCPNTIT----YSILLVASERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 41.3 bits (98), Expect = 2e-05
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 141 VTWNVMITGLVKWGELEFARSLFEEMPCRNV 171
VT+N +I+G K G+LE A LF+EM + V
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 309 PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR 359
P+ VT+ ++++ G VEE L F++M + + P++ Y LID L +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKR-GIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 5e-05
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 141 VTWNVMITGLVKWGELEFARSLFEEMPCRNVV 172
VT+N +I GL K G +E A LF+EM R +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 8e-05
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT 209
+VV++ +IDGY + + EAL LF +M +P+ T
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYT 40
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 4/44 (9%)
Query: 113 TALVNMYVSLGFLKDSSKLFDEMPER----NLVTWNVMITGLVK 152
L++ Y G ++++ KLF+EM +R N+ T++++I GL K
Sbjct: 7 NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGL 307
V++ S+ISG+ G +EA+E F M++ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 7e-04
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 137 ERNLVTWNVMITGLVKWGELEFARSLFEEMP 167
+ ++VT+N +I GL + G ++ A L +EM
Sbjct: 4 KPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.2 bits (85), Expect = 0.001
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 170 NVVSWTGIIDGYTRMNRSNEALALFRKMV 198
+VV++ +IDG R R +EA+ L +M
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.002
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 172 VSWTGIIDGYTRMNRSNEALALFRKMV 198
V++ +I GY + + EAL LF++M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMK 27
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.004
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310
V++ ++I G G +EA+E F M++ G++P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.91 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.78 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.75 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.74 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.7 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.7 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.68 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.66 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.56 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.55 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.55 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.54 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.54 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.53 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.52 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.49 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.47 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.45 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.42 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.41 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.4 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.39 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.39 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.38 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.33 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.32 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.3 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.3 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.25 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.23 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.2 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.19 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.18 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.17 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.16 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.11 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.1 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.1 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.06 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.02 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.01 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.0 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.99 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.95 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.92 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.92 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.89 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.88 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.86 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.85 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.8 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.79 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.78 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.78 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.77 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.77 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.76 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.76 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.73 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.7 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.64 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.64 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.55 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.54 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.45 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.41 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.39 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.37 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.29 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.2 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 98.2 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.19 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.18 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.18 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.18 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.14 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.14 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.14 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.04 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.03 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.02 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.01 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.99 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.98 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.98 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.96 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.96 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.95 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.95 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.94 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.92 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.91 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.91 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.91 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.9 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.89 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.86 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.84 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.82 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.81 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.8 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.75 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.75 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.74 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.74 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.74 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.73 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.7 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.7 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.69 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.67 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.67 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.63 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.62 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.61 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.52 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.5 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.47 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.46 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.46 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.44 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.42 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.31 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.3 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.25 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 97.24 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.24 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.23 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.18 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.06 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.0 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.97 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.9 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.89 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 96.84 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.8 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.8 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.79 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.75 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.74 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.74 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.65 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.6 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.6 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.57 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.54 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.54 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.54 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.43 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.43 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.42 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.4 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.4 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.38 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 96.34 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.3 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.29 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.25 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.17 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.15 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.12 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.99 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.93 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.93 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.92 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.88 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.87 | |
| PRK09687 | 280 | putative lyase; Provisional | 95.78 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 95.75 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.73 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.72 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 95.6 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.58 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.53 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.52 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 95.42 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.4 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.39 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.38 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.36 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.22 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 95.22 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.21 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.18 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.14 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.03 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.76 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.63 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.62 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.61 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.61 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 94.3 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.24 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.14 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 94.02 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.77 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.74 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 93.7 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.7 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 93.66 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 93.65 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.61 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 93.57 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.43 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.36 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.33 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 93.24 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.88 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.85 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 92.84 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.75 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 92.61 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.57 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.47 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.35 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 92.34 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 92.32 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 92.11 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.09 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.04 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 91.65 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 91.41 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.24 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.03 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.96 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 90.73 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 90.68 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.53 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.46 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 90.14 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.11 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.07 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.93 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 89.91 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.7 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 89.43 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 89.37 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.07 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.72 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.71 | |
| PF13762 | 145 | MNE1: Mitochondrial splicing apparatus component | 88.57 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 88.09 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.96 | |
| KOG0686 | 466 | consensus COP9 signalosome, subunit CSN1 [Posttran | 87.73 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.69 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 87.41 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 87.03 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 86.48 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 86.48 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.44 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 86.12 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 85.46 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 85.44 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.22 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.58 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 84.04 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 83.99 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.92 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 83.84 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 83.35 | |
| KOG0889 | 3550 | consensus Histone acetyltransferase SAGA, TRRAP/TR | 83.23 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 82.98 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.84 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 82.29 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 81.68 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 81.32 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.93 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 80.03 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-66 Score=511.24 Aligned_cols=428 Identities=25% Similarity=0.425 Sum_probs=372.0
Q ss_pred CCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC
Q 012879 9 TPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS 88 (454)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 88 (454)
++.+.+.+++..+.+.+. .||+.+||.+++.|++.|++++|.++|++|. . | |..+|+.++.+|++.|
T Consensus 137 ~~~~~a~~l~~~m~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~--~---~~~t~n~li~~~~~~g 203 (697)
T PLN03081 137 KSIRCVKAVYWHVESSGF-EPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-------E--R---NLASWGTIIGGLVDAG 203 (697)
T ss_pred CCHHHHHHHHHHHHHhCC-CcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-------C--C---CeeeHHHHHHHHHHCc
Confidence 344455555555555554 5566666666666666666666666666653 1 4 5556666666666666
Q ss_pred CcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC----CCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 012879 89 HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP----ERNLVTWNVMITGLVKWGELEFARSLFE 164 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 164 (454)
++++|.++|++|.+.|+.|+..+|+.++.++++.|+.+.+.+++..+. .+|..+|+.++.+|++.|++++|.++|+
T Consensus 204 ~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 204 NYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred CHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHH
Confidence 666666666666666666666666666666666666666666555544 3677889999999999999999999999
Q ss_pred hCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 165 EMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 165 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
+|.++|..+||.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.|.+++..+.+.|..+ +..
T Consensus 284 ~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~ 361 (697)
T PLN03081 284 GMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIV 361 (697)
T ss_pred hCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-Cee
Confidence 999999999999999999999999999999999998 999999999999999999999999999999999999766 999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 324 (454)
+++.|+++|+++|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~ 439 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS 439 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
|+.++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.++++++... |+..+|+.|+.+|...|+++.|..+++
T Consensus 440 g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~ 518 (697)
T PLN03081 440 GLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK-PTVNMWAALLTACRIHKNLELGRLAAE 518 (697)
T ss_pred CcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 9999999999999887799999999999999999999999999999998765 999999999999999999999999999
Q ss_pred HHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCCCcCC
Q 012879 405 KILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454 (454)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 454 (454)
++.+.+|.+...|..++.+|.+.|++++|.+++++|.++|+.+.||+||+
T Consensus 519 ~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i 568 (697)
T PLN03081 519 KLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWI 568 (697)
T ss_pred HHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEE
Confidence 99999999999999999999999999999999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-64 Score=502.16 Aligned_cols=428 Identities=30% Similarity=0.535 Sum_probs=408.2
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+.+++..+.+.+. .||+.+||.|+++|++.|++++|.++|+.|. . | |..+|+.++.+|++
T Consensus 300 ~~g~~~~a~~l~~~~~~~g~-~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-------~--~---d~~s~n~li~~~~~ 366 (857)
T PLN03077 300 LLGDERLGREMHGYVVKTGF-AVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-------T--K---DAVSWTAMISGYEK 366 (857)
T ss_pred hcCChHHHHHHHHHHHHhCC-ccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-------C--C---CeeeHHHHHHHHHh
Confidence 34567778888888888876 8999999999999999999999999999985 2 5 88899999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhcCCHHHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKWGELEFARSL 162 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~ 162 (454)
.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+ ++..+|+.++.+|++.|++++|.++
T Consensus 367 ~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~v 446 (857)
T PLN03077 367 NGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446 (857)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999874 7889999999999999999999999
Q ss_pred HhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch
Q 012879 163 FEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD 242 (454)
Q Consensus 163 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (454)
|++|.++|..+|+.++.+|++.|+.++|+.+|++|.. +++||..||..++.+|++.|+++.+.+++..+.+.|..+ +
T Consensus 447 f~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~-~ 523 (857)
T PLN03077 447 FHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF-D 523 (857)
T ss_pred HHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCc-c
Confidence 9999999999999999999999999999999999986 789999999999999999999999999999999999776 9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS 322 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 322 (454)
..++++|+.+|+++|++++|.++|+.+ .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 524 ~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 600 (857)
T PLN03077 524 GFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600 (857)
T ss_pred ceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHh
Confidence 999999999999999999999999998 49999999999999999999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
+.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+++++|.-. ||..+|+.|+.+|...|+.+.++..
T Consensus 601 ~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~e~~ 679 (857)
T PLN03077 601 RSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELGELA 679 (857)
T ss_pred hcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHH
Confidence 999999999999999966699999999999999999999999999999999754 9999999999999999999999999
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCCCcCC
Q 012879 403 TRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 454 (454)
.+++.+..|.+...|..+...|...|+|++|.++.+.|+++|+++.||+|||
T Consensus 680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~i 731 (857)
T PLN03077 680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWV 731 (857)
T ss_pred HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEE
Confidence 9999999999999999999999999999999999999999999999999996
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-61 Score=473.99 Aligned_cols=428 Identities=15% Similarity=0.202 Sum_probs=401.0
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
.++...+.++++.|.+.+...++..+++.++..|.+.|.+++|+.+|+.|. . | |..+|+.++.+|++.
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~-------~--p---d~~Tyn~LL~a~~k~ 450 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR-------N--P---TLSTFNMLMSVCASS 450 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC-------C--C---CHHHHHHHHHHHHhC
Confidence 467789999999999999878999999999999999999999999999996 2 6 999999999999999
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC----CCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP----ERNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|
T Consensus 451 g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf 530 (1060)
T PLN03218 451 QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998 489999999999999999999999999
Q ss_pred hhCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCC
Q 012879 164 EEMPC----RNVVSWTGIIDGYTRMNRSNEALALFRKMVAC-EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 164 ~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (454)
++|.+ ||..+|+.++.+|++.|++++|.++|++|... .++.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 531 ~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi 610 (1060)
T PLN03218 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNI 610 (1060)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 99963 89999999999999999999999999999862 27899999999999999999999999999999999987
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
.| +..+|+.++.+|++.|++++|.++|++|... .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.
T Consensus 611 ~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tyns 689 (1060)
T PLN03218 611 KG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSS 689 (1060)
T ss_pred CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 76 9999999999999999999999999999987 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHHcCC
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g 394 (454)
+|.+|++.|++++|.++|++|.+. |+.||..+|+.||.+|++.|++++|.++|++|... .||..+|+.++.+|.+.|
T Consensus 690 LI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G 768 (1060)
T PLN03218 690 LMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 999999999999999999999987 99999999999999999999999999999999876 899999999999999999
Q ss_pred ChhHHHHHHHHHHHhhcC-CCCcHHHHHHHHH----hcC-------------------CcCcHHHHHHHHhhcccccCC
Q 012879 395 NVEMGERVTRKILEMERG-YGGDYVLMYNILA----GVG-------------------RFGDAERLRRVMDERNAFKVP 449 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~----~~g-------------------~~~~a~~~~~~~~~~~~~~~~ 449 (454)
++++|.+++++|.+.+.. +..+|..++.++. +++ ..++|..+|++|.+.|+.|+.
T Consensus 769 ~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~ 847 (1060)
T PLN03218 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM 847 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence 999999999999998877 5567777776533 222 235699999999999998764
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-60 Score=469.35 Aligned_cols=430 Identities=15% Similarity=0.195 Sum_probs=374.5
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+..+++.|.+.+. .||..+|+.+|.+|++.|++++|.++|++|. ..|+. | |..+|+.+|.+|++
T Consensus 449 k~g~~e~A~~lf~~M~~~Gl-~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~---~~Gv~--P---dvvTynaLI~gy~k 519 (1060)
T PLN03218 449 SSQDIDGALRVLRLVQEAGL-KADCKLYTTLISTCAKSGKVDAMFEVFHEMV---NAGVE--A---NVHTFGALIDGCAR 519 (1060)
T ss_pred hCcCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH---HcCCC--C---CHHHHHHHHHHHHH
Confidence 45677888999999988887 8999999999999999999999999999998 88888 8 99999999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC------CCCchhHHHHHHHHHhcCCHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP------ERNLVTWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~A~ 160 (454)
.|++++|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999884 478889999999999999999999
Q ss_pred HHHhhCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 161 SLFEEMPC----RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 161 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
++|+.|.+ |+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..+|+.++.+|++.|++++|.++++.|.+.
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~ 678 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99998875 66789999999999999999999999999988 88999999999999999999999999999999998
Q ss_pred CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH
Q 012879 237 GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTF 314 (454)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 314 (454)
|..| +..+|+.|+.+|++.|++++|.++|++|... .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 679 G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty 757 (1060)
T PLN03218 679 GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITY 757 (1060)
T ss_pred CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 8766 8899999999999999999999999998764 589999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----c-------------------CChHHHHHHHh
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----A-------------------GRLEQAEKTAL 371 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~ 371 (454)
+.++.+|++.|++++|.+++++|.+. |+.||..+|+.++..|.+ + +..++|..+|+
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 99999999999999999999999888 999999999998865432 2 12367888899
Q ss_pred cCCCC--CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc-CCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccC
Q 012879 372 GIPSE--ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER-GYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKV 448 (454)
Q Consensus 372 ~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (454)
+|... .||..||+.++.++...++.+.+..+++++...+. .+..+|..++.++.+. .++|..++++|.+.|+.|+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 88887 88999999999888788888888888887754433 3567888999887322 3589999999999999876
Q ss_pred CC
Q 012879 449 PG 450 (454)
Q Consensus 449 ~~ 450 (454)
..
T Consensus 915 ~~ 916 (1060)
T PLN03218 915 VS 916 (1060)
T ss_pred cc
Confidence 53
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-60 Score=472.71 Aligned_cols=420 Identities=23% Similarity=0.336 Sum_probs=394.9
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
.++...+++++.++.+.+. .||+.+||+|+.+|++.|++++|.++|++|. . | |..+|+.+|.+|++.
T Consensus 200 ~~~~~~~~~~~~~~~~~g~-~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-------~--~---d~~s~n~li~~~~~~ 266 (857)
T PLN03077 200 IPDLARGREVHAHVVRFGF-ELDVDVVNALITMYVKCGDVVSARLVFDRMP-------R--R---DCISWNAMISGYFEN 266 (857)
T ss_pred ccchhhHHHHHHHHHHcCC-CcccchHhHHHHHHhcCCCHHHHHHHHhcCC-------C--C---CcchhHHHHHHHHhC
Confidence 3455667777777777775 7889999999999999999999999999996 2 5 888999999999999
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+ ||..+|+.++.+|++.|++++|.++|
T Consensus 267 g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf 346 (857)
T PLN03077 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF 346 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999874 89999999999999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH
Q 012879 164 EEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI 243 (454)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (454)
++|.+||..+|+.++.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.|+++.+.++++.+.+.|..+ +.
T Consensus 347 ~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-~~ 424 (857)
T PLN03077 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLIS-YV 424 (857)
T ss_pred hhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCc-ch
Confidence 9999999999999999999999999999999999998 999999999999999999999999999999999999877 99
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 323 (454)
.+++.|+.+|++.|++++|.++|++|.+ +|..+|+.+|.+|++.|+.++|..+|++|.. +++||..||+.++.+|++
T Consensus 425 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~--~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~ 501 (857)
T PLN03077 425 VVANALIEMYSKCKCIDKALEVFHNIPE--KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACAR 501 (857)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCC--CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhh
Confidence 9999999999999999999999999988 8999999999999999999999999999986 599999999999999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHH
Q 012879 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
.|+.+.+.+++..+.+. |+.++..++++|+++|+++|++++|.++|+++ .||..+|+.+|.+|++.|+.++|+++|
T Consensus 502 ~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf 577 (857)
T PLN03077 502 IGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELF 577 (857)
T ss_pred hchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999998 99999999999999999999999999999998 379999999999999999999999999
Q ss_pred HHHHHhhcC-CCCcHHHHHHHHHhcCCcCcHHHHHHHHh-hcccccCC
Q 012879 404 RKILEMERG-YGGDYVLMYNILAGVGRFGDAERLRRVMD-ERNAFKVP 449 (454)
Q Consensus 404 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 449 (454)
++|.+.+.. +..+|..++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 578 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 578 NRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred HHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 999988766 77889999999999999999999999998 56777653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-55 Score=431.26 Aligned_cols=393 Identities=20% Similarity=0.287 Sum_probs=261.9
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCC-CCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHS-HSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
++..+|+.+|..|.+.|++++|+++|+.|. ..+ .. | |..+|+.++.+|++.++++.+.+++..|.+.|+.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~---~~~~~~--~---~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~ 156 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILE---AGCPFT--L---PASTYDALVEACIALKSIRCVKAVYWHVESSGFEP 156 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHH---hcCCCC--C---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc
Confidence 456699999999999999999999999997 543 56 7 99999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHh
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC----RNVVSWTGIIDGYTR 183 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~ 183 (454)
|..+|+.++.+|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|.++|++|.+ |+..+|+.++.+|..
T Consensus 157 ~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~ 236 (697)
T PLN03081 157 DQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236 (697)
T ss_pred chHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999853 555666555555555
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|..+.+.+++..+.+. |..||..+|+.++.+|++.|++++|.++|+.|.+ ++..+|+.++.+|++.|++++|.
T Consensus 237 ~~~~~~~~~l~~~~~~~-g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 237 LGSARAGQQLHCCVLKT-GVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred CCcHHHHHHHHHHHHHh-CCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHH
Confidence 55555555555555554 5555555555555555555555555555555432 14455555555555555555555
Q ss_pred HHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 264 KLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
++|++|... .||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 311 ~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-- 388 (697)
T PLN03081 311 CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-- 388 (697)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--
Confidence 555555443 3455555555555555555555555555555555555555555555555555555555555555431
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh-hcC-CCCcH
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACSFHGNVEMGERVTRKILEM-ERG-YGGDY 417 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~-~~~~~ 417 (454)
||..+|++||.+|++.|+.++|.++|++|... .||..||+.++.+|.+.|+.++|.++|+.|.+. +.. +..+|
T Consensus 389 ---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y 465 (697)
T PLN03081 389 ---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHY 465 (697)
T ss_pred ---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccch
Confidence 34555555555555555555555555555443 455555555555555555555555555555432 111 23345
Q ss_pred HHHHHHHHhcCCcCcHHHHHHHH
Q 012879 418 VLMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
..++.+|.+.|++++|.+++++|
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC
Confidence 55555555555555555554443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-31 Score=268.62 Aligned_cols=416 Identities=13% Similarity=0.057 Sum_probs=236.8
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+..+++.+.+..+ +++.+|..+...+...|++++|.+.|+++. ...+. +...+..+...+..
T Consensus 443 ~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~---~~~~~------~~~~~~~la~~~~~ 511 (899)
T TIGR02917 443 RSGQFDKALAAAKKLEKKQP--DNASLHNLLGAIYLGKGDLAKAREAFEKAL---SIEPD------FFPAAANLARIDIQ 511 (899)
T ss_pred hcCCHHHHHHHHHHHHHhCC--CCcHHHHHHHHHHHhCCCHHHHHHHHHHHH---hhCCC------cHHHHHHHHHHHHH
Confidence 34566667777777766554 566677777777777777777777777776 44433 55566666677777
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
.|++++|.+.++.+.+.+ +.+..++..+...+.+.|+.++|...++++.+ .+...+..+...+.+.|++++|.+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777777776654 44556666666666677777777777666643 23345555666666666666666666
Q ss_pred hhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 164 EEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 164 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
+.+.+ .+...|..+..++...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+. .|
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~ 666 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL--QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--KP 666 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 66543 33455666666666666666666666666552 2334455556666666666666666666666554 34
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.+...+..++..+...|++++|.++++.+....| +...+..+...+...|++++|.+.|+++.+.+ |+..++..+..
T Consensus 667 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 744 (899)
T TIGR02917 667 DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHR 744 (899)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHH
Confidence 3455555555566666666666666655555433 34445555555555555555555555555442 22344444555
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhH
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 398 (454)
++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.|+++... +++..++..+...+...|+ .+
T Consensus 745 ~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~ 821 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PR 821 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HH
Confidence 555555555555555555442 2334444555555555555555555555555444 2234444444444444444 44
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 399 GERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
|+..++++.+..|.++..+..++.++.+.|++++|.+.++++.+.
T Consensus 822 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 866 (899)
T TIGR02917 822 ALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNI 866 (899)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444444444444444444444444444444444444444443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-30 Score=264.16 Aligned_cols=416 Identities=12% Similarity=0.067 Sum_probs=346.5
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+..+++...+..+ .+...+..+...+...|++++|.+.|+.+. ...+. +..++..+...+..
T Consensus 477 ~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~ 545 (899)
T TIGR02917 477 GKGDLAKAREAFEKALSIEP--DFFPAAANLARIDIQEGNPDDAIQRFEKVL---TIDPK------NLRAILALAGLYLR 545 (899)
T ss_pred hCCCHHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCcC------cHHHHHHHHHHHHH
Confidence 45667778888888887776 667778888888999999999999999987 55544 77788888888888
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
.|++++|..+++++.+.+ +.+...+..++..+...|++++|..+++.+.+ .+..+|..+...+.+.|++++|...|
T Consensus 546 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 624 (899)
T TIGR02917 546 TGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSF 624 (899)
T ss_pred cCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999888765 55677788888899999999999999988864 45668888889999999999999999
Q ss_pred hhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 164 EEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 164 ~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
+.+.+ .+...+..+..++...|++++|...|+++.+ ..+.+..++..+...+...|+++.|..+++.+.+.. |
T Consensus 625 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~ 700 (899)
T TIGR02917 625 KKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE--LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--P 700 (899)
T ss_pred HHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--c
Confidence 88754 3556788888888999999999999998887 345567888888889999999999999999888873 5
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
.+...+..+...+...|++++|.+.|+++....|+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...
T Consensus 701 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~ 779 (899)
T TIGR02917 701 KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAEL 779 (899)
T ss_pred CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 577788888889999999999999999988877777778888888999999999999999888764 4467788888888
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A 399 (454)
|...|++++|..+|+.+.+. .+++..++..+...+...|+ .+|+..++++.... .+..++..+...+...|++++|
T Consensus 780 ~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 856 (899)
T TIGR02917 780 YLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRA 856 (899)
T ss_pred HHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 88899999999999998874 34567788888888999988 78999988877763 3556777888888889999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
.+.++++++.+|.++.++..++.++.+.|++++|.+++++|.+
T Consensus 857 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 857 LPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 9999999999888888888999999999999999999988863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-24 Score=189.32 Aligned_cols=385 Identities=12% Similarity=0.116 Sum_probs=333.6
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV 109 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 109 (454)
-..+|..+...+-..|++++|+.+++.+. +..+. ....|..+..++...|+.+.|.+.|.+.++.+ |+.
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~ai---el~p~------fida~inla~al~~~~~~~~a~~~~~~alqln--P~l 183 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAI---ELKPK------FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDL 183 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHH---hcCch------hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cch
Confidence 34688899999999999999999999999 77766 78899999999999999999999999988754 554
Q ss_pred h-hHHHHHHHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHH
Q 012879 110 Y-VNTALVNMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSLFEEMPCRN---VVSWTGIIDGYT 182 (454)
Q Consensus 110 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~ 182 (454)
. ....+...+-..|++++|...+.+..+ |. ...|..+.-.+-..|++..|+..|++...-| ...|-.|...|-
T Consensus 184 ~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~k 263 (966)
T KOG4626|consen 184 YCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYK 263 (966)
T ss_pred hhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHH
Confidence 4 344455566678999999999888775 43 3579999999999999999999999987633 368889999999
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 262 (454)
..+.+++|+..|.+.... .+-....+..+...|...|+++.|+..+++..+. .|.-+..|+.|..++-..|++.+|
T Consensus 264 e~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea 339 (966)
T KOG4626|consen 264 EARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEA 339 (966)
T ss_pred HHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHH
Confidence 999999999999998863 3344678889999999999999999999999997 676789999999999999999999
Q ss_pred HHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 263 SKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.+.|.+.....| ...+.+.|...|...|.++.|..+|....+. .|. ...++.|...|-++|++++|+..|++..
T Consensus 340 ~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal-- 415 (966)
T KOG4626|consen 340 VDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL-- 415 (966)
T ss_pred HHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH--
Confidence 999999988866 4568899999999999999999999998875 343 4578889999999999999999999998
Q ss_pred cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 341 CEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 341 ~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
.++|+ ...|+.+...|-..|+.+.|.+.+.+.....|. ...++.|...|...|++.+|+..++.+++..|+.+.+|.
T Consensus 416 -rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~c 494 (966)
T KOG4626|consen 416 -RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYC 494 (966)
T ss_pred -hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhh
Confidence 56777 678999999999999999999999999887554 578899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCcCcHH
Q 012879 419 LMYNILAGVGRFGDAE 434 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~ 434 (454)
.++.++.-..+|.+-.
T Consensus 495 Nllh~lq~vcdw~D~d 510 (966)
T KOG4626|consen 495 NLLHCLQIVCDWTDYD 510 (966)
T ss_pred HHHHHHHHHhcccchH
Confidence 8888887777776633
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.1e-23 Score=211.54 Aligned_cols=414 Identities=10% Similarity=0.024 Sum_probs=332.0
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhH---------
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTY--------- 77 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~--------- 77 (454)
..++.+.+...++...+..+ .+..++..+...+.+.|++++|+..|++.. ...+. . .....+
T Consensus 281 ~~g~~~~A~~~l~~aL~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al---~~~p~--~--~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 281 DSGQGGKAIPELQQAVRANP--KDSEALGALGQAYSQQGDRARAVAQFEKAL---ALDPH--S--SNRDKWESLLKVNRY 351 (1157)
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC--c--cchhHHHHHHHhhhH
Confidence 35677888899999988876 788899999999999999999999999998 44433 1 021112
Q ss_pred ---HHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHH
Q 012879 78 ---SFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLV 151 (454)
Q Consensus 78 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~ 151 (454)
......+...|++++|...++++++.. +.+...+..+..++...|++++|++.|+++.+ | +...+..+...+.
T Consensus 352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~ 430 (1157)
T PRK11447 352 WLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR 430 (1157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 122445778999999999999999875 45677888899999999999999999999885 3 3446666666664
Q ss_pred hcCCHHHHHHHHhhCCCCC------------cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc
Q 012879 152 KWGELEFARSLFEEMPCRN------------VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ 219 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (454)
.++.++|..+++.+.... ...+..+...+...|++++|+..|++..+. .+-+...+..+...+.+
T Consensus 431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~ 507 (1157)
T PRK11447 431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ 507 (1157)
T ss_pred -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 568899999998876321 224556677888999999999999999984 34567788889999999
Q ss_pred cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC--Ch---------hhHHHHHHHHHh
Q 012879 220 NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK--NL---------VSWTSIISGFAM 288 (454)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~---------~~~~~l~~~~~~ 288 (454)
.|++++|...++++.+. .|.++..+..+...+...|+.++|...++.+..... +. ..+..+...+..
T Consensus 508 ~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 508 AGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred cCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999999999875 455777777777778889999999999998865422 11 112345667889
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (454)
.|+.++|..+++. .+++...+..+...+.+.|++++|+..|+.+.+. -+.+...+..++..|...|++++|++
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999872 2445667778889999999999999999999974 34457888999999999999999999
Q ss_pred HHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC------cHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 369 TALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG------DYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 369 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
.++.+....| +...+..+..++...|++++|.++++++++..+.+++ .+..++.++...|++++|.+.+++..
T Consensus 659 ~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 659 QLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9998887744 4566777888999999999999999999988776543 45567899999999999999999886
Q ss_pred h
Q 012879 442 E 442 (454)
Q Consensus 442 ~ 442 (454)
.
T Consensus 739 ~ 739 (1157)
T PRK11447 739 V 739 (1157)
T ss_pred h
Confidence 4
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-22 Score=208.65 Aligned_cols=422 Identities=10% Similarity=0.017 Sum_probs=273.0
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhc---------------CCCCCCCCC
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYT---------------HSHSPLPPL 71 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------------~~~~~~p~~ 71 (454)
..++.+.+...++.+.+..| .++..+..+...+...|++++|+..|+++.+... .+.. +.
T Consensus 159 ~~g~~~~A~~~L~~ll~~~P--~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~--~~- 233 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNADYP--GNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVS--DA- 233 (1157)
T ss_pred CCccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCC--hh-
Confidence 34666778888888888876 6777888999999999999999999998752100 0000 00
Q ss_pred CChhhHH----------------------------------HHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHH
Q 012879 72 FDSFTYS----------------------------------FLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVN 117 (454)
Q Consensus 72 ~~~~~~~----------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 117 (454)
....+. .....+...|++++|...|++.++.. +.+...+..+..
T Consensus 234 -~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~ 311 (1157)
T PRK11447 234 -SVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQ 311 (1157)
T ss_pred -hHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 000010 11334566788899999999888865 446778888888
Q ss_pred HHHhCCChhHHHHHHhhCCC--CCc---hhHHH------------HHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHH
Q 012879 118 MYVSLGFLKDSSKLFDEMPE--RNL---VTWNV------------MITGLVKWGELEFARSLFEEMPC---RNVVSWTGI 177 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~--~~~---~~~~~------------ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 177 (454)
++.+.|++++|+..|++..+ |+. ..|.. ....+.+.|++++|+..|++..+ .+...+..+
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~L 391 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGL 391 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 89999999999999888764 322 11221 23456788899999999988765 344567778
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC-------chHHHHHHHH
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA-------FDIRVLNCLI 250 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~l~ 250 (454)
...+...|++++|++.|++..+. .+.+...+..+...+. .++.++|..+++.+....... .....+..+.
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 88888999999999999988874 2333444444444332 223344444433322110000 0011222333
Q ss_pred HHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH---------------
Q 012879 251 DTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTF--------------- 314 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~--------------- 314 (454)
..+...|++++|++.|++..+..| +...+..+...|.+.|++++|...++++.+.... +...+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHH
Confidence 444445555555555555544444 2334444444555555555555555554432111 11111
Q ss_pred -----------------------------HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 315 -----------------------------LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 315 -----------------------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
......+...|+.++|.++++ . .+++...+..+...+.+.|++++
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~---~---~p~~~~~~~~La~~~~~~g~~~~ 621 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR---Q---QPPSTRIDLTLADWAQQRGDYAA 621 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH---h---CCCCchHHHHHHHHHHHcCCHHH
Confidence 123344555666666666655 1 23445566778888999999999
Q ss_pred HHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 366 AEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 366 A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
|++.|+++....| +...+..++..+...|++++|++.++++.+..|.+...+..++.++.+.|++++|.++++++....
T Consensus 622 A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 622 ARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 9999998887744 577888889999999999999999999988888888888888999999999999999999988764
Q ss_pred c
Q 012879 445 A 445 (454)
Q Consensus 445 ~ 445 (454)
.
T Consensus 702 ~ 702 (1157)
T PRK11447 702 K 702 (1157)
T ss_pred c
Confidence 3
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-22 Score=192.94 Aligned_cols=397 Identities=11% Similarity=-0.016 Sum_probs=300.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV 111 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 111 (454)
..+......+.+.|++++|+..|++.. .. . | +...|..+..++...|++++|++.++..++.. +.+...
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al---~~--~--p---~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a 196 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAI---EC--K--P---DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKA 196 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---hc--C--C---chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHH
Confidence 346677888999999999999999987 43 3 5 66789999999999999999999999999875 446678
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWGELEFARSLFEEMPC-------------------- 168 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-------------------- 168 (454)
+..+..+|...|++++|+..|..+... +......++..+........+...++.-..
T Consensus 197 ~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (615)
T TIGR00990 197 LNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPR 276 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcc
Confidence 889999999999999999877655321 111111111111111111222222211110
Q ss_pred ---------CCc---chHHHHHHHH---HhcCChHHHHHHHHHHHHccCCCC-ChhhHHhHHHHHHccCchhHHHHHHHh
Q 012879 169 ---------RNV---VSWTGIIDGY---TRMNRSNEALALFRKMVACEYTEP-SEITILAVLPAIWQNGDVKSCQLIHGY 232 (454)
Q Consensus 169 ---------~~~---~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (454)
.+. ..+..+...+ ...+++++|...|++..+.+...| ....+..+...+...|++++|...+++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k 356 (615)
T TIGR00990 277 PAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK 356 (615)
T ss_pred hhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 000 1111111111 223689999999999987632233 356678888888999999999999999
Q ss_pred hhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 012879 233 GEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR 311 (454)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 311 (454)
..+. .|.....|..+..++...|++++|...|+++....| +...|..+...+...|++++|+..|++..+.. +.+.
T Consensus 357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~ 433 (615)
T TIGR00990 357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI 433 (615)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence 9986 565788899999999999999999999999988766 67889999999999999999999999998864 2356
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-h-------HH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-V-------VW 383 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~-------~~ 383 (454)
..+..+..++.+.|++++|...|+...+. .+.+...+..+..++...|++++|++.|++.....|+. . .+
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 67777888899999999999999999874 34457788899999999999999999999977763321 1 12
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 384 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+..+..+...|++++|+++++++++.+|.+...+..++.++.+.|++++|.+.+++..+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 2222334457999999999999999999888889999999999999999999999886643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.6e-24 Score=187.77 Aligned_cols=401 Identities=12% Similarity=0.054 Sum_probs=334.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCC----------------------------CCCChhhHHHHHHHHh
Q 012879 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLP----------------------------PLFDSFTYSFLIRTCA 85 (454)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p----------------------------~~~~~~~~~~l~~~~~ 85 (454)
-..|..-..+.|++.+|.+.-+.+-+ .++.+.+ +..-.++|..+.+.+.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~---~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQ---EDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILK 127 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhc---cCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHH
Confidence 44566667788888888887665542 1111000 0013468888899999
Q ss_pred ccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHH-HHHHHHhcCCHHHHHHH
Q 012879 86 TLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNV-MITGLVKWGELEFARSL 162 (454)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-ll~~~~~~~~~~~A~~~ 162 (454)
..|+++.|+.+++.+++.. +-.+..|..+..++...|+.+.|.+.|.+..+ |+.....+ +-..+-..|++++|...
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHH
Confidence 9999999999999999875 44678899999999999999999999988876 54444333 33445567889998888
Q ss_pred HhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC-hhhHHhHHHHHHccCchhHHHHHHHhhhhcCC
Q 012879 163 FEEMPC--RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS-EITILAVLPAIWQNGDVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 163 ~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (454)
+.+..+ |. ...|+.|...+-.+|+...|++.|++..+. .|+ ...|..|...|...+.++.|...+.+....
T Consensus 207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl---dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL---DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC---CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 877654 43 368999999999999999999999999863 455 578999999999999999999999998886
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
.|....++..+...|...|.++-|++.|++..+..|+ ...|+.|..++-..|++.+|.+.+.+..... +.-....+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 6768889999999999999999999999999998885 5689999999999999999999999988863 2245678899
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
...+...|.+++|..+|....+. .|. ....+.|...|-..|++++|+..+++.....|+ ...|+.+...|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v---~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEV---FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhh---ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999998863 454 567889999999999999999999999988665 5789999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
.+.|++.+.+++..+|.-.+++..|+.+|...|+..+|+.-+++..+.....
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDf 489 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDF 489 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999988866543
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-22 Score=186.14 Aligned_cols=298 Identities=13% Similarity=0.066 Sum_probs=213.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC---chhH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH---VYVN 112 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 112 (454)
.....+...|++++|+..|+++. ..++. +..++..+...+...|++++|..+++.+.+.+..++ ...+
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~ 110 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEML---KVDPE------TVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLAL 110 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHH---hcCcc------cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 33445567788888888888887 55544 667788888888888888888888888876532221 2456
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC--c------chHHHHHHHH
Q 012879 113 TALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPCRN--V------VSWTGIIDGY 181 (454)
Q Consensus 113 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~------~~~~~l~~~~ 181 (454)
..+...|.+.|++++|..+|+++.+ .+..+++.++..+.+.|++++|.+.++.+.+.+ . ..+..+...+
T Consensus 111 ~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 111 QELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Confidence 7778888888888888888888765 345677778888888888888888887775421 1 1344566677
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
...|++++|...|+++.+. .+.+...+..+...+.+.|++++|.++++++.+.+. .....++..++.+|...|++++
T Consensus 191 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 191 LARGDLDAARALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HhCCCHHHHHHHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHcCCHHH
Confidence 7788888888888887763 233455667777778888888888888888776521 1124566777788888888888
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc---CCChHHHHHHHHHHH
Q 012879 262 ASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH---GGLVEEGLNFFDKMV 338 (454)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~ 338 (454)
|.+.++++.+..|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++.+.
T Consensus 268 A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~ 345 (389)
T PRK11788 268 GLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLV 345 (389)
T ss_pred HHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHH
Confidence 88888887777676666677777788888888888888877765 5677777777766553 457778888888777
Q ss_pred HhcCCCCChh
Q 012879 339 EECEVLPDIK 348 (454)
Q Consensus 339 ~~~~~~~~~~ 348 (454)
+. ++.|++.
T Consensus 346 ~~-~~~~~p~ 354 (389)
T PRK11788 346 GE-QLKRKPR 354 (389)
T ss_pred HH-HHhCCCC
Confidence 76 6666554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-22 Score=182.82 Aligned_cols=289 Identities=15% Similarity=0.106 Sum_probs=194.5
Q ss_pred HHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC-CC------cchHHHHHHHHHhcCChH
Q 012879 119 YVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPC-RN------VVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~------~~~~~~l~~~~~~~~~~~ 188 (454)
+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+.. ++ ...+..++..|...|+++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 3444555555555555543 2 222444455555555555555555555443 11 134556666677777777
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch---HHHHHHHHHHHHhcCChhHHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD---IRVLNCLIDTYAKCGCIFSASKL 265 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~ 265 (454)
+|..+|+++.+. .+++..++..++..+.+.|++++|.+.++.+.+.+..+.. ...+..+...+.+.|++++|.+.
T Consensus 125 ~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 125 RAEELFLQLVDE--GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHcC--CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 777777777652 3345566667777777777777777777776665322211 22455677777888888888888
Q ss_pred HHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 012879 266 FEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVL 344 (454)
Q Consensus 266 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 344 (454)
|+++.+..| +...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~ 279 (389)
T PRK11788 203 LKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---Y 279 (389)
T ss_pred HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C
Confidence 888877655 355677777888888888888888888877543333456777888888888888888888888764 4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc---CCChhHHHHHHHHHHHhhcC
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF---HGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~ 412 (454)
|+...+..++..+.+.|++++|..+++++....|+..+++.++..+.. .|+.++++.+++++++....
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 565666778888888888888888888877777888888877776654 45788888888888876544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.9e-21 Score=183.72 Aligned_cols=331 Identities=11% Similarity=-0.021 Sum_probs=255.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCch
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVY 110 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 110 (454)
..-...++..+.++|++++|+.+++... ...+. +...+..++.+....|+++.|...++.+.+.. |.+..
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l---~~~p~------~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~ 111 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRV---LTAKN------GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPE 111 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHH---HhCCC------chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChH
Confidence 3344556777888899999999999887 65555 55667777777788999999999999998875 55677
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc-chHHHHHHHHHhc
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPC--RNV-VSWTGIIDGYTRM 184 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~ 184 (454)
.+..+...+...|++++|...+++..+ | +...+..+...+...|++++|...++.+.. |+. ..+.. +..+...
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~-~~~l~~~ 190 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIAT-CLSFLNK 190 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHc
Confidence 888888889999999999999988875 4 455778888889999999999998887643 333 33333 3347888
Q ss_pred CChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH---
Q 012879 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS--- 261 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--- 261 (454)
|++++|...++++.+. ...++...+..+...+...|++++|...++.+.+. .|.+...+..+..++...|++++
T Consensus 191 g~~~eA~~~~~~~l~~-~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 191 SRLPEDHDLARALLPF-FALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred CCHHHHHHHHHHHHhc-CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHH
Confidence 9999999999988774 32344445556667888899999999999998876 46678888889999999999885
Q ss_pred -HHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 262 -ASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 262 -a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
|...|++.....| +...+..+...+...|++++|+..+++..+... .+...+..+..++.+.|++++|...++.+..
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~ 346 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7888998888766 566788888899999999999999999887642 2455666777888889999999999998886
Q ss_pred hcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc
Q 012879 340 ECEVLPDI-KHYGCLIDMLGRAGRLEQAEKTALGIPSEITD 379 (454)
Q Consensus 340 ~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 379 (454)
. .|+. ..+..+..++...|+.++|...|++.....|+
T Consensus 347 ~---~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 347 E---KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred h---CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 4 3443 33444567788899999999999987766443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-20 Score=181.74 Aligned_cols=386 Identities=11% Similarity=0.006 Sum_probs=294.6
Q ss_pred HHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHH
Q 012879 41 YSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYV 120 (454)
Q Consensus 41 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 120 (454)
+.++.+|+.---.|+... +..-.... +......++..+.+.|++++|..+++...... +-+...+..++.+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l 87 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHP---EKVRDSAG---NEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPL 87 (656)
T ss_pred hhhhhchhhHhHHhhccc---Hhhhhhcc---cccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHh
Confidence 456777776666665553 21111011 44556677888899999999999999998875 445556666777788
Q ss_pred hCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHH
Q 012879 121 SLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEALALF 194 (454)
Q Consensus 121 ~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (454)
..|++++|...|+++.+ | +...+..+...+...|++++|...+++..+ | +...+..+...+...|++++|...+
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 89999999999999975 4 456788888999999999999999998875 3 4567888999999999999999999
Q ss_pred HHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC
Q 012879 195 RKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
+++... .+.+...+..+ ..+...|++++|...++.+.+... +.+......+..++...|++++|+..|+++....|
T Consensus 168 ~~~~~~--~P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~-~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p 243 (656)
T PRK15174 168 RTQAQE--VPPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA-LERQESAGLAVDTLCAVGKYQEAIQTGESALARGL 243 (656)
T ss_pred HHHHHh--CCCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC-CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 988764 22333333333 457889999999999999877632 22444556667889999999999999999998866
Q ss_pred -ChhhHHHHHHHHHhcCChhH----HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 275 -NLVSWTSIISGFAMHGMGKE----AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 275 -~~~~~~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
+...+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+. -+.+...
T Consensus 244 ~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a 320 (656)
T PRK15174 244 DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYV 320 (656)
T ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 66778889999999999986 899999998863 335678888999999999999999999999875 2334667
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhH-HHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC-CcHH----HHHHH
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEITDVVV-WRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYV----LMYNI 423 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~----~l~~~ 423 (454)
+..+..++.+.|++++|...++++....|+... +..+..++...|+.++|+..++++++..|.+. ..|. .+..+
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~~~~~~~ 400 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGLLALDGQ 400 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHHHHHHHH
Confidence 778899999999999999999998877566433 44457788999999999999999999988843 3333 23333
Q ss_pred HHhcCCcCcHHHHHHHH
Q 012879 424 LAGVGRFGDAERLRRVM 440 (454)
Q Consensus 424 ~~~~g~~~~a~~~~~~~ 440 (454)
+...+..++......++
T Consensus 401 ~~~~~~~~~~~~W~~~~ 417 (656)
T PRK15174 401 ISAVNLPPERLDWAWEV 417 (656)
T ss_pred HHhcCCccchhhHHHHH
Confidence 34444444333333333
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-20 Score=187.02 Aligned_cols=402 Identities=9% Similarity=-0.032 Sum_probs=285.7
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
-++....-.+......|+.++|+++|.... ..... +...+..+..++...|++++|..+++..++.. +.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~---~~~~~------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~ 82 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYR---VHMQL------PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQN 82 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC
Confidence 344455566677778899999999888886 32322 55668888888899999999999999888764 455
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHH
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYT 182 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~ 182 (454)
...+..+..++...|++++|+..+++..+ | +.. +..+..++...|+.++|+..+++..+ | +...+..+..++.
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~ 161 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 66777888888899999999999988864 3 344 77778888889999999999988775 3 3445566777888
Q ss_pred hcCChHHHHHHHHHHHHccCCCCCh------hhHHhHHHHHHc-----cCch---hHHHHHHHhhhhc-CCCCchHHHH-
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSE------ITILAVLPAIWQ-----NGDV---KSCQLIHGYGEKR-GFTAFDIRVL- 246 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~~~~- 246 (454)
..++.++|+..++.... .|+. ......+..... .+++ +.|.+.++.+.+. ...|.....+
T Consensus 162 ~~~~~e~Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 162 NNRLSAPALGAIDDANL----TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred HCCChHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 88888889888876543 2221 112222222221 1223 6677777777754 1122111111
Q ss_pred ---HHHHHHHHhcCChhHHHHHHHHhhhcCCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---cHHHHHHHH
Q 012879 247 ---NCLIDTYAKCGCIFSASKLFEDISVERKN-L-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP---NRVTFLSVL 318 (454)
Q Consensus 247 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~ 318 (454)
...+..+...|++++|++.|+++....++ + ..-..+...|...|++++|+..|+++.+..... .......+.
T Consensus 238 ~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 238 RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 11133445678899999999998876432 1 122225678888999999999999887643211 123455666
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHH
Q 012879 319 NACSHGGLVEEGLNFFDKMVEECE----------VLPD---IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWR 384 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~ 384 (454)
.++...|++++|..+++.+..... -.|+ ...+..+...+...|++++|++.++++... +.+...+.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 677888999999999998876411 0122 224456677888889999999999988777 34567788
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 385 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.+...+...|++++|++.++++++..|++...+...+..+.+.|++++|..+++++.+...
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 8888888999999999999999999998888888888899999999999999988887543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-19 Score=174.07 Aligned_cols=385 Identities=10% Similarity=-0.061 Sum_probs=286.3
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
.++.+.+...|+...+.. |+...|..+..+|.+.|++++|++.++... ...+. +...|..+..++...
T Consensus 140 ~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al---~l~p~------~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAAL---ELDPD------YSKALNRRANAYDGL 207 (615)
T ss_pred cCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHH---HcCCC------CHHHHHHHHHHHHHc
Confidence 456677777787776654 567889999999999999999999999998 66555 778899999999999
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC-----------------------------C
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-----------------------------R 138 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------------~ 138 (454)
|++++|...+..+...+. .+......++..+........+...++.-.. .
T Consensus 208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 999999988876655431 1111111111111111111112222211110 0
Q ss_pred Cc---hhHHHHHHH---HHhcCCHHHHHHHHhhCCC-----C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC
Q 012879 139 NL---VTWNVMITG---LVKWGELEFARSLFEEMPC-----R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS 206 (454)
Q Consensus 139 ~~---~~~~~ll~~---~~~~~~~~~A~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 206 (454)
+. ..+..+... ....+++++|.+.|+...+ | ....++.+...+...|++++|+..|++..+. .+..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~ 364 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRV 364 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCc
Confidence 00 011111111 1224688999999988764 2 3356888888999999999999999999874 3344
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISG 285 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 285 (454)
...|..+...+...|++++|...++.+.+. .|.++.++..+..++...|++++|...|++.....| +...+..+...
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~ 442 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVT 442 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHH
Confidence 678889999999999999999999999886 566889999999999999999999999999998877 56678888899
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hh-------HHHHHHHHH
Q 012879 286 FAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IK-------HYGCLIDML 357 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~-------~~~~l~~~~ 357 (454)
+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|.+.|+...+. .|+ .. .++.....+
T Consensus 443 ~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 443 QYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHHHHHHHHHHH
Confidence 999999999999999988753 335678888899999999999999999998864 222 11 112222334
Q ss_pred HhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 358 GRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
...|++++|.+.+++.....| +...+..+...+...|++++|++.|+++.+..+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 457999999999999877644 44578889999999999999999999999887653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-19 Score=177.58 Aligned_cols=394 Identities=9% Similarity=-0.058 Sum_probs=302.4
Q ss_pred cCCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHh
Q 012879 6 NSQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA 85 (454)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~ 85 (454)
...++.+.+..++.......+ .+...+..+...+.+.|++++|.++|+... ...+. +...+..+..++.
T Consensus 26 ~~~g~~~~A~~~~~~~~~~~~--~~a~~~~~lA~~~~~~g~~~~A~~~~~~al---~~~P~------~~~a~~~la~~l~ 94 (765)
T PRK10049 26 LWAGQDAEVITVYNRYRVHMQ--LPARGYAAVAVAYRNLKQWQNSLTLWQKAL---SLEPQ------NDDYQRGLILTLA 94 (765)
T ss_pred HHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHH
Confidence 345677778888888876444 556679999999999999999999999988 55444 6677888889999
Q ss_pred ccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHH
Q 012879 86 TLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSL 162 (454)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~ 162 (454)
..|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+ |+ ...+..+...+...|..+.|++.
T Consensus 95 ~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~ 172 (765)
T PRK10049 95 DAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGA 172 (765)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Confidence 9999999999999998874 55666 88899999999999999999999985 43 44566777888899999999999
Q ss_pred HhhCCC-CCc------chHHHHHHHHHh-----cCCh---HHHHHHHHHHHHccCCCCChh-hHH----hHHHHHHccCc
Q 012879 163 FEEMPC-RNV------VSWTGIIDGYTR-----MNRS---NEALALFRKMVACEYTEPSEI-TIL----AVLPAIWQNGD 222 (454)
Q Consensus 163 ~~~~~~-~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~~~~~~~~~-~~~----~l~~~~~~~~~ 222 (454)
++.... |+. .....+++.... .+++ ++|+..++.+.+.....|+.. .+. ..+..+...|+
T Consensus 173 l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~ 252 (765)
T PRK10049 173 IDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDR 252 (765)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh
Confidence 998775 221 122223333322 2234 778889998886312223321 111 11345567799
Q ss_pred hhHHHHHHHhhhhcCCC-CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-----hhHHHHHHHHHhcCChhHHH
Q 012879 223 VKSCQLIHGYGEKRGFT-AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-----VSWTSIISGFAMHGMGKEAV 296 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~ 296 (454)
.++|...|+.+.+.+.. |.+.. ..+..+|...|++++|+..|+++....|.. .....+..++...|++++|.
T Consensus 253 ~~eA~~~~~~ll~~~~~~P~~a~--~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~ 330 (765)
T PRK10049 253 YKDVISEYQRLKAEGQIIPPWAQ--RWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGAL 330 (765)
T ss_pred HHHHHHHHHHhhccCCCCCHHHH--HHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHH
Confidence 99999999999987532 32222 335779999999999999999987765432 34566777889999999999
Q ss_pred HHHHHHHhCCC-----------CCcH---HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 297 ENFGRMQKVGL-----------KPNR---VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 297 ~~~~~m~~~~~-----------~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
.+++++.+... .|+. ..+..+...+...|+.++|++.++++... .+.+...+..+...+...|+
T Consensus 331 ~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 331 TVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 99999987531 1232 24456667888999999999999999874 45557788899999999999
Q ss_pred hHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 363 LEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
+++|++.++++....|+ ...+..++..+...|++++|+.+++++++..|+++.+
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999988565 5677777788999999999999999999999988744
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-19 Score=175.75 Aligned_cols=415 Identities=10% Similarity=-0.004 Sum_probs=270.8
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+...+++..+..| .++.++..+...|.+.|++++|+..+++.. ...+. |...+..+.. +
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv---~ldP~------n~~~~~~La~-i-- 121 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQL---KRHPG------DARLERSLAA-I-- 121 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcc------cHHHHHHHHH-h--
Confidence 44777788889999998888 778888999999999999999999999887 55443 4444444422 2
Q ss_pred cCCcchHhHHHHHHHHcCC--------------------------------------CCCchhHHHH-HHHHHhCCChhH
Q 012879 87 LSHPNLGTQLHAVISKVGF--------------------------------------QSHVYVNTAL-VNMYVSLGFLKD 127 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~--------------------------------------~~~~~~~~~l-~~~~~~~g~~~~ 127 (454)
+++.+|..+++++.+... .|+..+.... ..+|.+.|++++
T Consensus 122 -~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred -ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 666777777777665431 1122222333 667778888888
Q ss_pred HHHHHhhCCCC----------------------------------CchhHHHHHHHHHhcCCHHHHHHHHhhCCC-----
Q 012879 128 SSKLFDEMPER----------------------------------NLVTWNVMITGLVKWGELEFARSLFEEMPC----- 168 (454)
Q Consensus 128 a~~~~~~~~~~----------------------------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----- 168 (454)
|+.++.++.+. +...+..+...|.+.|+.++|.++++++..
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 88888777531 222334556667778888888888877641
Q ss_pred CCcchH--------------------------------------------------------------------------
Q 012879 169 RNVVSW-------------------------------------------------------------------------- 174 (454)
Q Consensus 169 ~~~~~~-------------------------------------------------------------------------- 174 (454)
|...+|
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 000000
Q ss_pred -------------------HHHHHHHHhcCChHHHHHHHHHHHH-ccCC-------------------------------
Q 012879 175 -------------------TGIIDGYTRMNRSNEALALFRKMVA-CEYT------------------------------- 203 (454)
Q Consensus 175 -------------------~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~------------------------------- 203 (454)
..+.-..+..|+.++|.++|++... .+..
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 0000111223444444444444332 0000
Q ss_pred -------------------------------CC--ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHH
Q 012879 204 -------------------------------EP--SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250 (454)
Q Consensus 204 -------------------------------~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 250 (454)
++ +...|..+..++.. ++.++|...+...... .| +......+.
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~P-d~~~~L~lA 516 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QP-DAWQHRAVA 516 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CC-chHHHHHHH
Confidence 11 22223333333332 4444555555554443 23 322233334
Q ss_pred HHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 330 (454)
..+...|++++|...|+++....|+...+..+...+.+.|+.++|...+++..+.. +++...+..+.......|++++|
T Consensus 517 ~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 517 YQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 44456777777777777766655555556666667777888888888888777653 22223333333444456888888
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
...+++..+. .|+...+..+..++.+.|++++|+..+++.....| +...+..+..++...|++++|++.++++++.
T Consensus 596 l~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8888888754 46777888888889999999999999998888744 4667778888888899999999999999999
Q ss_pred hcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 410 ERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
.|.++..+..++.++...|++++|...+++..+..
T Consensus 673 ~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 673 LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99988889999999999999999999998887654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-17 Score=160.97 Aligned_cols=397 Identities=10% Similarity=-0.022 Sum_probs=229.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHH
Q 012879 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT 113 (454)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 113 (454)
|...| ...+.|+++.|+..|++.. +..+. +......++..+...|+.++|+..+++..... +.......
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL---~~~P~------~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~ll 106 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEES---KAGPL------QSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLA 106 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHH---hhCcc------chhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHH
Confidence 44444 4568899999999999998 55544 32222388888889999999999999987211 22233333
Q ss_pred HHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--chHHHHHHHHHhcCChH
Q 012879 114 ALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPCRNV--VSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~ 188 (454)
.+...+...|++++|+++|+++.+ | +...+..++..+...++.++|++.++++...++ ..+..++..+...++..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 346688899999999999999985 3 455677788889999999999999999987444 44433333444466676
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcC-------------------------------
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG------------------------------- 237 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------------- 237 (454)
+|++.++++.+. .|.+...+..++.++.+.|-...|.++..+-...-
T Consensus 187 ~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~ 264 (822)
T PRK14574 187 DALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERF 264 (822)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence 799999999984 35567777888888888887776666555432110
Q ss_pred ------------------CCCchHH----HHHHHHHHHHhcCChhHHHHHHHHhhhcCC--ChhhHHHHHHHHHhcCChh
Q 012879 238 ------------------FTAFDIR----VLNCLIDTYAKCGCIFSASKLFEDISVERK--NLVSWTSIISGFAMHGMGK 293 (454)
Q Consensus 238 ------------------~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 293 (454)
..|+... +..-.+-++...|++.++++.|+.+..... ...+-..+.++|...++++
T Consensus 265 ~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~ 344 (822)
T PRK14574 265 DIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPE 344 (822)
T ss_pred HHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcH
Confidence 0111101 111123334444555555555555554321 2223344455555555555
Q ss_pred HHHHHHHHHHhCC-----CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC----------CCC---hhHHHHHHH
Q 012879 294 EAVENFGRMQKVG-----LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV----------LPD---IKHYGCLID 355 (454)
Q Consensus 294 ~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~l~~ 355 (454)
+|..+++++.... ..++......|.-++...+++++|..+++.+.+.... .|+ ...+..++.
T Consensus 345 kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~ 424 (822)
T PRK14574 345 KAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQ 424 (822)
T ss_pred HHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHH
Confidence 5555555544321 0112222344455555555555555555555442110 011 111223344
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHH
Q 012879 356 MLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAE 434 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (454)
.+.-.|+..+|++.++++... +-|......+...+...|++.+|++.++.+....|.+..+....+.++...|++.+|.
T Consensus 425 ~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 425 SLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence 444555555555555555444 2244445555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHhhc
Q 012879 435 RLRRVMDER 443 (454)
Q Consensus 435 ~~~~~~~~~ 443 (454)
.+.+.+...
T Consensus 505 ~~~~~l~~~ 513 (822)
T PRK14574 505 LLTDDVISR 513 (822)
T ss_pred HHHHHHHhh
Confidence 555554443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-17 Score=161.74 Aligned_cols=394 Identities=11% Similarity=0.006 Sum_probs=298.4
Q ss_pred hhhhhHHHH-HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc-cCCcchHhHHHHHHHHcCCC
Q 012879 29 HHSQLFNTL-LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT-LSHPNLGTQLHAVISKVGFQ 106 (454)
Q Consensus 29 ~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~ 106 (454)
|++.+.... .+.|.+.|++++|++++..+. +.++. +..-...+..++.. .++ +.+..++.. .++
T Consensus 179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~---k~~pl------~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk 244 (987)
T PRK09782 179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEAR---QQNTL------SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIF 244 (987)
T ss_pred CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcc
Confidence 345544444 889999999999999999998 66655 66667777777777 466 666666442 334
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHhhCCC-----CCchhHHHH------------------------------HHHH-
Q 012879 107 SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-----RNLVTWNVM------------------------------ITGL- 150 (454)
Q Consensus 107 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l------------------------------l~~~- 150 (454)
.++..+..++..|.+.|+.++|.+.++++.. |+..+|.-+ +..+
T Consensus 245 ~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (987)
T PRK09782 245 TDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLL 324 (987)
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999999863 211111111 1111
Q ss_pred --------------------------------------------------------------HhcCCHHHHHHHHhhCCC
Q 012879 151 --------------------------------------------------------------VKWGELEFARSLFEEMPC 168 (454)
Q Consensus 151 --------------------------------------------------------------~~~~~~~~A~~~~~~~~~ 168 (454)
++.|+.++|.++|+....
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~ 404 (987)
T PRK09782 325 KEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYP 404 (987)
T ss_pred hccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcC
Confidence 234566666666654321
Q ss_pred --------------------------------------------------------------------C--CcchHHHHH
Q 012879 169 --------------------------------------------------------------------R--NVVSWTGII 178 (454)
Q Consensus 169 --------------------------------------------------------------------~--~~~~~~~l~ 178 (454)
+ +...|..+.
T Consensus 405 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG 484 (987)
T PRK09782 405 FQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLA 484 (987)
T ss_pred CCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHH
Confidence 0 122334444
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
.++.. +++++|+..+.+.... .|+......+...+...|+++.|...++++... .| +...+..+..++.+.|+
T Consensus 485 ~~l~~-~~~~eAi~a~~~Al~~---~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p-~~~a~~~la~all~~Gd 557 (987)
T PRK09782 485 KCYRD-TLPGVALYAWLQAEQR---QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM-SNEDLLAAANTAQAAGN 557 (987)
T ss_pred HHHHh-CCcHHHHHHHHHHHHh---CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC-CcHHHHHHHHHHHHCCC
Confidence 44444 6777888877777764 466555555566667999999999999998664 33 44556677888999999
Q ss_pred hhHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 259 IFSASKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
+++|.+.|++.....|+. ..+..+.......|++++|...+++..+. .|+...+..+..++.+.|++++|...++..
T Consensus 558 ~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~A 635 (987)
T PRK09782 558 GAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAA 635 (987)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999998876643 33333444555669999999999999886 467788889999999999999999999999
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 338 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
... -+.+...+..+..++...|++++|++.+++.....| +...+..+..++...|++++|+..++++++..|.+..+
T Consensus 636 L~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i 713 (987)
T PRK09782 636 LEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALI 713 (987)
T ss_pred HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchh
Confidence 874 334567788888899999999999999999888745 57788999999999999999999999999999999989
Q ss_pred HHHHHHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 417 YVLMYNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
....++...+..+++.|.+.+++-...++..
T Consensus 714 ~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~ 744 (987)
T PRK09782 714 TPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS 744 (987)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 9999999999999999999988877665543
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-17 Score=160.37 Aligned_cols=398 Identities=10% Similarity=-0.022 Sum_probs=294.6
Q ss_pred ccccCCCCCchhHHHHHHHHhhhhhhhhh-hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHH
Q 012879 3 ILQNSQTPNNITTQIHSHLLTTNSLLHHS-QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLI 81 (454)
Q Consensus 3 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 81 (454)
++.-+.++...+...+++.++..+ -+. .++ .++..+...|+.++|+..+++.. ..... .......+.
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P--~~~~av~-dll~l~~~~G~~~~A~~~~eka~---~p~n~------~~~~llalA 109 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGP--LQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ---SSMNI------SSRGLASAA 109 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCc--cchhhHH-HHHHHHHHcCCcHHHHHHHHHhc---cCCCC------CHHHHHHHH
Confidence 344566777888888999888886 332 333 88888889999999999999986 22211 344444456
Q ss_pred HHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHHHH
Q 012879 82 RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELEFA 159 (454)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A 159 (454)
..+...|++++|.++++++.+.. +-++..+..++..+...++.++|++.++++.+ |+...+..++..+...++..+|
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence 78889999999999999999876 45677778888999999999999999999986 4434443333333345666569
Q ss_pred HHHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHH--------------------------------------------
Q 012879 160 RSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEALA-------------------------------------------- 192 (454)
Q Consensus 160 ~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~-------------------------------------------- 192 (454)
++.++++.+ | +...+..++.++.+.|-...|.+
T Consensus 189 L~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 189 LQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 999988874 3 23444445555544444433333
Q ss_pred ----HHHHHHHccCCCCCh-hhHH----hHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 193 ----LFRKMVACEYTEPSE-ITIL----AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 193 ----~~~~~~~~~~~~~~~-~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
-++.+...-+..|.. ..|. -.+.++...|+..+++..++.+...+... ...+-..+.++|...+++++|+
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~ 347 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAA 347 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHH
Confidence 333333311122322 2221 23446778899999999999999887443 5668889999999999999999
Q ss_pred HHHHHhhhcCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----------CCc--HH-HHHHHHHHHh
Q 012879 264 KLFEDISVERK-------NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL-----------KPN--RV-TFLSVLNACS 322 (454)
Q Consensus 264 ~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~--~~-~~~~l~~~~~ 322 (454)
.+|+.+....+ +......|.-+|...+++++|..+++++.+... .|+ -. .+..++..+.
T Consensus 348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~ 427 (822)
T PRK14574 348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV 427 (822)
T ss_pred HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence 99999876531 333457788999999999999999999987421 122 22 3344567788
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 401 (454)
..|+..+|++.++.+... -+-|......+.+.+...|.+.+|++.++......| +..+....+.++...|++++|..
T Consensus 428 ~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 428 ALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 899999999999999764 455788889999999999999999999988777755 45677788889999999999999
Q ss_pred HHHHHHHhhcCCCCc
Q 012879 402 VTRKILEMERGYGGD 416 (454)
Q Consensus 402 ~~~~~~~~~~~~~~~ 416 (454)
+.+++++..|++..+
T Consensus 506 ~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 506 LTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHhhCCCchhH
Confidence 999999999998743
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.2e-17 Score=138.94 Aligned_cols=380 Identities=11% Similarity=0.016 Sum_probs=250.9
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCC-CChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHH
Q 012879 37 LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPL-FDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTAL 115 (454)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (454)
+...+.+.+++.+|+++|+... .+-+. .+. ......+.+.-.+.+.|.++.|+.-|+...+.. |+..+--.|
T Consensus 243 igni~~kkr~fskaikfyrmal---dqvps--ink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl 315 (840)
T KOG2003|consen 243 IGNIHFKKREFSKAIKFYRMAL---DQVPS--INKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNL 315 (840)
T ss_pred ecceeeehhhHHHHHHHHHHHH---hhccc--cchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhh
Confidence 3345667777888888888776 33222 100 012334444455778888888888888877753 665554445
Q ss_pred HHHHHhCCChhHHHHHHhhCCC----------------CCchhHHHHH-----HH-------------------------
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPE----------------RNLVTWNVMI-----TG------------------------- 149 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~----------------~~~~~~~~ll-----~~------------------------- 149 (454)
+-++..-|+-++..+.|..|.. |+....+..| .-
T Consensus 316 ~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~ 395 (840)
T KOG2003|consen 316 IICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIA 395 (840)
T ss_pred hhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccc
Confidence 5555567788888888877752 2222222111 11
Q ss_pred ---------------------------------HHhcCCHHHHHHHHhhCCCCCcchHHHHH------HHHHhcCChHHH
Q 012879 150 ---------------------------------LVKWGELEFARSLFEEMPCRNVVSWTGII------DGYTRMNRSNEA 190 (454)
Q Consensus 150 ---------------------------------~~~~~~~~~A~~~~~~~~~~~~~~~~~l~------~~~~~~~~~~~a 190 (454)
+.+.|+++.|+++++-+.+.|..+-.+.. +.+.--.++..|
T Consensus 396 ~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~a 475 (840)
T KOG2003|consen 396 PDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADA 475 (840)
T ss_pred cchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHH
Confidence 22334444444444333332222111111 111111223333
Q ss_pred HHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 191 LALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
.++-+..+.. ..-+......-.......|++++|.+.+++....... -......+.-.+-..|++++|++.|-++.
T Consensus 476 qqyad~aln~--dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas--c~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 476 QQYADIALNI--DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS--CTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred HHHHHHHhcc--cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH--HHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 3333333221 1122222222233344568899999999998876321 12223334446778899999999998887
Q ss_pred hc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 271 VE-RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 271 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
.. ..+..+.-.+...|-...+..+|++++-+.... ++.|+..+..|...|-+.|+-.+|.+.+-.--+ -++.+..+
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~ 628 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIET 628 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHH
Confidence 65 346777777888899999999999999877664 566788999999999999999999887665544 56778899
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHH-cCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS-FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
...|..-|....-+++|+.+|++..-..|+..-|..++..|. +.|++.+|.++++...+.-|.+......+++.+...|
T Consensus 629 iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 629 IEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 999999999999999999999998777899999999987765 6899999999999999999999988888888887776
Q ss_pred Cc
Q 012879 429 RF 430 (454)
Q Consensus 429 ~~ 430 (454)
-.
T Consensus 709 l~ 710 (840)
T KOG2003|consen 709 LK 710 (840)
T ss_pred ch
Confidence 43
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-15 Score=141.26 Aligned_cols=423 Identities=12% Similarity=0.062 Sum_probs=312.2
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
..+.+.+.+.|..+++..+ +|+...--=.......+++..|+.+|..+. ...+...| |.. -.+..++.+.
T Consensus 143 ~~~~~~A~a~F~~Vl~~sp--~Nil~LlGkA~i~ynkkdY~~al~yyk~al---~inp~~~a---D~r--Igig~Cf~kl 212 (1018)
T KOG2002|consen 143 DKSMDDADAQFHFVLKQSP--DNILALLGKARIAYNKKDYRGALKYYKKAL---RINPACKA---DVR--IGIGHCFWKL 212 (1018)
T ss_pred CccHHHHHHHHHHHHhhCC--cchHHHHHHHHHHhccccHHHHHHHHHHHH---hcCcccCC---Ccc--chhhhHHHhc
Confidence 3346788888888888887 887776666666677889999999999987 33333223 443 2334667789
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCC---hhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHH
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF---LKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARS 161 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~ 161 (454)
|+.+.|...|....+.+ |-++.++..|...-....+ +..+...+...-. .++...+.|.+.|.-.|+++.+..
T Consensus 213 ~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 213 GMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred cchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 99999999999988865 2344444444433333333 4555555555442 578889999999999999999999
Q ss_pred HHhhCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCh--hhHHhHHHHHHccCchhHHHHHHHhh
Q 012879 162 LFEEMPCRN------VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSE--ITILAVLPAIWQNGDVKSCQLIHGYG 233 (454)
Q Consensus 162 ~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (454)
+...+...+ ...|-.+.++|-..|++++|..+|-+..+. .++. ..+.-+...+.+.|+++.+...|+.+
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv 368 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKV 368 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHH
Confidence 988776422 245788999999999999999999988864 3443 44567788899999999999999999
Q ss_pred hhcCCCCchHHHHHHHHHHHHhcC----ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHH----h
Q 012879 234 EKRGFTAFDIRVLNCLIDTYAKCG----CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQ----K 304 (454)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~ 304 (454)
.+. .|.+..+...|...|...+ ..+.|..++.+.....| |...|-.+...+... +...++..|.... .
T Consensus 369 ~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~ 445 (1018)
T KOG2002|consen 369 LKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILES 445 (1018)
T ss_pred HHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHH
Confidence 987 5768888888888888775 56777788877777644 667777777766654 4444477666543 4
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC--CCCCh------hHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECE--VLPDI------KHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+-.+.+...|.+...+...|++++|...|........ ..++. .+--.+..++-..++.+.|.+.|..+...
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 45557788899999999999999999999998876411 12222 22334666777788999999999999888
Q ss_pred CCcH-hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 377 ITDV-VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 377 ~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
.|.- ..|-.++......++..+|...+++++..+..++.++..++..+.+...+..|.+-++.+.+.-...
T Consensus 526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~ 597 (1018)
T KOG2002|consen 526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTK 597 (1018)
T ss_pred CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccC
Confidence 6764 3455555444456888999999999999999999999999999999999999998777766654433
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.5e-16 Score=145.86 Aligned_cols=419 Identities=10% Similarity=0.042 Sum_probs=254.1
Q ss_pred hHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchH
Q 012879 14 TTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLG 93 (454)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a 93 (454)
+.++.....+..+ .|+.+.+.|.+.|.-.|++..+..+.+.+..-...+.. -...|-.+.+++-..|++++|
T Consensus 255 ~~~ll~~ay~~n~--~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~------~aes~Y~~gRs~Ha~Gd~ekA 326 (1018)
T KOG2002|consen 255 GVQLLQRAYKENN--ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSI------KAESFYQLGRSYHAQGDFEKA 326 (1018)
T ss_pred HHHHHHHHHhhcC--CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHH------HHHHHHHHHHHHHhhccHHHH
Confidence 3334444444444 78888999999999999999999999888731111111 445688889999999999999
Q ss_pred hHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcC----CHHHHHHHHhhC
Q 012879 94 TQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWG----ELEFARSLFEEM 166 (454)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~----~~~~A~~~~~~~ 166 (454)
..+|-+..+....--+..+--+...+.+.|+++.+...|+.+.+ | +..+.-.+...|+..+ ..+.|..++...
T Consensus 327 ~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~ 406 (1018)
T KOG2002|consen 327 FKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKV 406 (1018)
T ss_pred HHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHH
Confidence 99998887765222244556688889999999999999998875 3 3345555556666554 456677777666
Q ss_pred CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHH----HccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcC--
Q 012879 167 PCR---NVVSWTGIIDGYTRMNRSNEALALFRKMV----ACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG-- 237 (454)
Q Consensus 167 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 237 (454)
.++ |...|-.+...+... ++..++.+|.... .. +.++.+...+.+.......|+++.|...|......-
T Consensus 407 ~~~~~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~-~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~ 484 (1018)
T KOG2002|consen 407 LEQTPVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESK-GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLE 484 (1018)
T ss_pred HhcccccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHc-CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhh
Confidence 553 344555554444443 3333366665443 23 444667778888888888888888888877776541
Q ss_pred -CCC-----chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 238 -FTA-----FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 238 -~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
..+ ++..+-..+..++-..++++.|.+.|..+....|+-+ .|-.+.......++..+|...+.+..+.. ..+
T Consensus 485 ~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~n 563 (1018)
T KOG2002|consen 485 VANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSN 563 (1018)
T ss_pred hcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCC
Confidence 111 1122334456666666777777777777777666543 33333322333456667777776665531 222
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh------------cCChHHHHHHHhcCCCC-C
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR------------AGRLEQAEKTALGIPSE-I 377 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~-~ 377 (454)
+..+..+...+.+..++..|.+-|....+.....+|..+.-+|.+.|.+ .+..++|++.|.++... +
T Consensus 564 p~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp 643 (1018)
T KOG2002|consen 564 PNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP 643 (1018)
T ss_pred cHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc
Confidence 3333334445555555555655555554442223444444444443321 22355566666655555 2
Q ss_pred CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 378 TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 378 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
-|...-+-+...++..|++.+|..+|.++.+...+.+.+|..++.+|...|+|-.|+++|+...+.
T Consensus 644 kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 644 KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666666666666666666665556666666666666666666666666655544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-14 Score=126.31 Aligned_cols=407 Identities=13% Similarity=0.100 Sum_probs=311.0
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV 109 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 109 (454)
+...|-.....=..++++..|..+|+++. ..... +...|..-+..=.+.+.+..|..+++..+..-...|
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERAL---dvd~r------~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVd- 141 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERAL---DVDYR------NITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVD- 141 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHH---hcccc------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHH-
Confidence 44455555555556778889999999998 65555 677888888888899999999999999887532222
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCC--CCCchhHHHHHHHHHhcCCHHHHHHHHhhCC--CCCcchHHHHHHHHHhcC
Q 012879 110 YVNTALVNMYVSLGFLKDSSKLFDEMP--ERNLVTWNVMITGLVKWGELEFARSLFEEMP--CRNVVSWTGIIDGYTRMN 185 (454)
Q Consensus 110 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~ 185 (454)
..|--.+..--..|++..|.++|++-. +|+..+|++.|+.=.+-+.++.|..++++.. .|++.+|-...+.-.+.|
T Consensus 142 qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 142 QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC
Confidence 344455556667899999999999877 5999999999999999999999999999865 699999999999999999
Q ss_pred ChHHHHHHHHHHHHccCC-CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch--HHHHHHHHHHHHhcCChhHH
Q 012879 186 RSNEALALFRKMVACEYT-EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD--IRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 262 (454)
+...|..+|+...+.-|. ..+...+.+....-.....++.|.-+|+-.... .|.+ ...|..+...--+-|+....
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhh
Confidence 999999999998874222 112233444444446677888999999988876 4434 55666666666666776555
Q ss_pred HHH--------HHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH-------HHHHHHHHH---hc
Q 012879 263 SKL--------FEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV-------TFLSVLNAC---SH 323 (454)
Q Consensus 263 ~~~--------~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~l~~~~---~~ 323 (454)
... |+++....| |-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=-+| ..
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 334444444 7778888888888889999999999998876 455321 222221122 25
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH----hcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHH
Q 012879 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG----RAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 399 (454)
..+.+.+.++|+...+ -++....||..+--.|+ ++.++..|.+++.......|...+|...|..-.+.++++..
T Consensus 379 ~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 6788999999999887 45556677766655444 67899999999999988889999999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCCC
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGC 451 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 451 (454)
..++++.++-+|.+..+|...+..-...|+.+.|..+|+-.+.......|..
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel 508 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL 508 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence 9999999999999999999999999999999999999988877665555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.3e-15 Score=127.80 Aligned_cols=394 Identities=13% Similarity=0.035 Sum_probs=271.8
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCC-hhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFD-SFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
-...+-...+.|.++|++++|++.|.+.. +.. | + +..|.....+|...|+++++.+.-...++.+ |+
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI---~l~----p---~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~ 181 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAI---ELC----P---DEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PD 181 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHH---hcC----C---CCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cH
Confidence 34456667788999999999999999998 433 5 5 6788999999999999999999888887754 43
Q ss_pred -chhHHHHHHHHHhCCChhHHHHHHhhCC--C-CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCc----------
Q 012879 109 -VYVNTALVNMYVSLGFLKDSSKLFDEMP--E-RNLVTWNVMITGLVKWGELEFARSLFEEMPC---RNV---------- 171 (454)
Q Consensus 109 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~---------- 171 (454)
+-.+..-..++-..|++++|+.=..-.. + -+..+-..++.-..+..-...+.+-+..=.. |+.
T Consensus 182 Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 182 YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 4466677778888898888764221110 0 0000011111111111111222222221011 111
Q ss_pred -------------chHHHHHHHHHh--cC---ChHHHHHHHHHHHHccCCCCChh-----------hHHhHHHHHHccCc
Q 012879 172 -------------VSWTGIIDGYTR--MN---RSNEALALFRKMVACEYTEPSEI-----------TILAVLPAIWQNGD 222 (454)
Q Consensus 172 -------------~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~~~ 222 (454)
.....+..++.. .+ .+..|.+.+.+-.......++.. +.......+.-.|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 122222222211 11 34444444444322111122222 22222334456788
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
.-.+..-|+..++.. |.+...|--+..+|....+.++..+.|++.....| |+.+|..-.+.+.-.+++++|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999873 43555587888899999999999999999998866 788899988888889999999999999
Q ss_pred HHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc--
Q 012879 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-- 379 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-- 379 (454)
.+... +-+...|..+.-+.-+.+.+++++..|++.++ .++..+.+|+.....+...+++++|.+.|+......|+
T Consensus 420 ai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 420 AISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 88763 22556676777677788999999999999988 56677889999999999999999999999988777443
Q ss_pred -------HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 380 -------VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 380 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
+.+...++..- -.+++..|+.+++++++.+|....+|..|+....+.|+.++|+++|++-.
T Consensus 497 ~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 12222222222 34899999999999999999999999999999999999999999998753
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=150.13 Aligned_cols=260 Identities=18% Similarity=0.107 Sum_probs=111.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCC-hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPS-EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
.+...+.+.|++++|++++++.... ..+|+ ...|..+...+...++.+.|...++++...+ +.++..+..++.. .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--KANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc--ccccccccccccc-c
Confidence 4567788889999999999665543 32344 4444455556677888999999999888764 3366677777777 7
Q ss_pred hcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHhcCCChHHHHHH
Q 012879 255 KCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLSVLNACSHGGLVEEGLNF 333 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~ 333 (454)
..+++++|.+++...-+..+++..+..++..+...++++++.++++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999988876666677778888888999999999999999977532 345677788888889999999999999
Q ss_pred HHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 334 FDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 334 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
+++..+. .| +......++..+...|+.+++.++++..... +.|+..+..+..++...|+.++|...++++.+..|
T Consensus 169 ~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 9999875 34 4777888899999999999987777766555 34667788899999999999999999999999999
Q ss_pred CCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 412 GYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 412 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
.|+.....++.++...|+.++|.++.++..+
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999877654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-14 Score=135.57 Aligned_cols=334 Identities=14% Similarity=0.125 Sum_probs=247.0
Q ss_pred HHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhC---CCCCcchHHHHHHHHHhcCChH
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEM---PCRNVVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 188 (454)
..+.....|++++|..++.++.+ .....|..|...|-..|+.+++...+-.. ...|...|..+.......|.++
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence 33344445888888888888875 34567888888888888888887766433 3355677777888888888888
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHH----HHHHHHHHhcCChhHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL----NCLIDTYAKCGCIFSASK 264 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~ 264 (454)
.|.-.|.+.++. .+++...+..-...|-+.|+...|...|.++.... +|.+..-+ ...++.|...++-+.|.+
T Consensus 225 qA~~cy~rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~-p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 225 QARYCYSRAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLD-PPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhC-CchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 888888888873 45566666666777888888888888888888763 22232222 334566667777788888
Q ss_pred HHHHhhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------------------------CCcHHHH
Q 012879 265 LFEDISVE---RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL---------------------------KPNRVTF 314 (454)
Q Consensus 265 ~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---------------------------~p~~~~~ 314 (454)
.++..... .-+...+++++..+.+...++.|......+..... .++...+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 88877664 23555678888888888888888888777765222 2222221
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC--CcHhHHHHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEV--LPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI--TDVVVWRTLLGAC 390 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~l~~~~ 390 (454)
.+.-++......+....+....... .+ .-+...|.-+.++|...|++.+|+.+|..+.... .+...|-.+..+|
T Consensus 382 -rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~ 459 (895)
T KOG2076|consen 382 -RLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY 459 (895)
T ss_pred -hHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence 2233444555555555555555554 53 3356788899999999999999999999999883 3466899999999
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccCCCCcC
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSL 453 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~ 453 (454)
...|.++.|++.+++++...|.+..+..+|...+.+.|+.++|.+.+..+..-+....++++|
T Consensus 460 ~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~ 522 (895)
T KOG2076|consen 460 MELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW 522 (895)
T ss_pred HHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence 999999999999999999999999999999999999999999999999988666555677776
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-13 Score=119.12 Aligned_cols=417 Identities=9% Similarity=0.057 Sum_probs=318.3
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
..+.+.++.+|+..+.-.. .+...|-..+..=.++.....|..+|++.. ..-+. -...|-..+..=-..
T Consensus 86 q~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAv---t~lPR------VdqlWyKY~ymEE~L 154 (677)
T KOG1915|consen 86 QKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAV---TILPR------VDQLWYKYIYMEEML 154 (677)
T ss_pred HHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHH---Hhcch------HHHHHHHHHHHHHHh
Confidence 3455678888888888876 899999999999999999999999999997 33333 223455555566678
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC--CCCchhHHHHHHHHHhcCCHHHHHHHHhh
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP--ERNLVTWNVMITGLVKWGELEFARSLFEE 165 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 165 (454)
|++..|.++|+.-.+ ..|+...|++.|+.-.+.+.++.|..++++.+ .|++.+|-.....=.+.|....|..+|+.
T Consensus 155 gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vyer 232 (677)
T KOG1915|consen 155 GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYER 232 (677)
T ss_pred cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 999999999998876 57999999999999999999999999999976 69999999999999999999999999987
Q ss_pred CCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC--hhhHHhHHHHHHccCchhHHHHH--------
Q 012879 166 MPC------RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS--EITILAVLPAIWQNGDVKSCQLI-------- 229 (454)
Q Consensus 166 ~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~-------- 229 (454)
..+ .+...+.+....-.++..++.|.-+|+-.++. ++.+ ...|......--+-|+.......
T Consensus 233 Aie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 233 AIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 664 23345666666666778889999999888873 3333 34455555544555665443322
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh---hHHHHH-----HHH---HhcCChhHHHHH
Q 012879 230 HGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV---SWTSII-----SGF---AMHGMGKEAVEN 298 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~l~-----~~~---~~~g~~~~A~~~ 298 (454)
++..++. .|.|-.+|-..+..-...|+.+...++|++....-|... .|...| -++ ....+.+.+.++
T Consensus 311 YE~~v~~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~v 388 (677)
T KOG1915|consen 311 YEKEVSK--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQV 388 (677)
T ss_pred HHHHHHh--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4444444 455777888888888888999999999999887744321 222222 122 246788999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHH----hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 299 FGRMQKVGLKPNRVTFLSVLNAC----SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
++..++. ++...+||..+--.| .++.+...|.+++.... |..|...+|...|..-.+.+.++....++++..
T Consensus 389 yq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 389 YQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9988884 555667776554444 36678899999999887 778999999999999899999999999999988
Q ss_pred CCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC--CCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 375 SEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY--GGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 375 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.-.| +..+|......-...|+.+.|..+|+-++....-+ ...|-..++.-...|.++.|..+++++.++.-
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 8744 56788888887788899999999999888754433 33566777777888999999999999887643
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.3e-12 Score=118.01 Aligned_cols=415 Identities=10% Similarity=0.024 Sum_probs=229.9
Q ss_pred hhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHH-HHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcc
Q 012879 13 ITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQL-QQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPN 91 (454)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 91 (454)
.++.+....++.-+ -+...|.+-...=-.+|+.+...++..+- ..+...|+. . +...|-.=...|-..|..-
T Consensus 424 nAkkvLNkaRe~ip--td~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~--i---~rdqWl~eAe~~e~agsv~ 496 (913)
T KOG0495|consen 424 NAKKVLNKAREIIP--TDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVE--I---NRDQWLKEAEACEDAGSVI 496 (913)
T ss_pred HHHHHHHHHHhhCC--CChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhccee--e---cHHHHHHHHHHHhhcCChh
Confidence 33444444444433 44445555444445555555555555432 112234444 4 4555555555555555555
Q ss_pred hHhHHHHHHHHcCCCCC--chhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHH----------------------
Q 012879 92 LGTQLHAVISKVGFQSH--VYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWN---------------------- 144 (454)
Q Consensus 92 ~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~---------------------- 144 (454)
.++.+....+..|+.-. ..||+.-...|.+.+.++-|..+|....+ .+...|.
T Consensus 497 TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqka 576 (913)
T KOG0495|consen 497 TCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKA 576 (913)
T ss_pred hHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 55555555554443321 23444444555555555555555544443 1222333
Q ss_pred ------------HHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhh
Q 012879 145 ------------VMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT 209 (454)
Q Consensus 145 ------------~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (454)
....-+-..|++..|..++.+.-+ | +...|..-+.......+++.|..+|.+.... .|+...
T Consensus 577 v~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~---sgTeRv 653 (913)
T KOG0495|consen 577 VEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI---SGTERV 653 (913)
T ss_pred HHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc---CCcchh
Confidence 333334445555555555554433 2 2234555555555555555555555555432 445555
Q ss_pred HHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHh
Q 012879 210 ILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAM 288 (454)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~ 288 (454)
|.--+...--.+..++|.+++++..+. .|.-...|..+.+.+-+.++++.|...|..-...-|+ +..|-.+...=-+
T Consensus 654 ~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 654 WMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred hHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 544444444555555555555555554 3434455555555555555666655555555444442 3344444444455
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (454)
.|.+-.|..++++..-.+.. +...|-..|+.=.+.|+.+.|..++.+..+. .+.+...|..-|....+.++-.+...
T Consensus 732 ~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~D 808 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSID 808 (913)
T ss_pred hcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHHH
Confidence 55566666666655554322 4455555555555666666666666555552 33344455555555555555444444
Q ss_pred HHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 369 TALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 369 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.+++.. .|+.+.-.+...+....++++|.+.|.+++..+|++..+|..+...+.+.|.-++-.+++........
T Consensus 809 ALkkce---~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP 882 (913)
T KOG0495|consen 809 ALKKCE---HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEP 882 (913)
T ss_pred HHHhcc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence 444333 25566666777788888999999999999999999999999999999999999999999998876544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-16 Score=138.79 Aligned_cols=257 Identities=16% Similarity=0.093 Sum_probs=87.2
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcC-CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcC
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWG 154 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~ 154 (454)
.+...+...|++++|.+++....... .+.|+..|..+...+...++++.|...++++... +...+..++.. ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 44667778888888888886544433 2445556666666777778888888888877752 23355555555 6777
Q ss_pred CHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHh
Q 012879 155 ELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGY 232 (454)
Q Consensus 155 ~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 232 (454)
++++|.+++...-+ +++..+..++..+...++++++.++++........+.+...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777765533 4555666677777777777777777777665433345566666666777777777777777777
Q ss_pred hhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH
Q 012879 233 GEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR 311 (454)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 311 (454)
..+. .|.++.+...++..+...|+.+++.++++...... .|+..+..+..++...|+.++|+..|++..+.. +.|.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~ 248 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDP 248 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-H
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cccc
Confidence 7775 45466667777777777777777666666665552 355556666677777777777777777766542 2355
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
.+...+..++...|+.++|.++.+++.+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 5666666777777777777766665543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=1e-13 Score=127.05 Aligned_cols=280 Identities=12% Similarity=-0.017 Sum_probs=159.3
Q ss_pred CCChhHHHHHHhhCCCC--CchhHHHH-HHHHHhcCCHHHHHHHHhhCCC--CCcchHH--HHHHHHHhcCChHHHHHHH
Q 012879 122 LGFLKDSSKLFDEMPER--NLVTWNVM-ITGLVKWGELEFARSLFEEMPC--RNVVSWT--GIIDGYTRMNRSNEALALF 194 (454)
Q Consensus 122 ~g~~~~a~~~~~~~~~~--~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~--~~~~~~~--~l~~~~~~~~~~~~a~~~~ 194 (454)
.|+++.|++.+....+. ++..+..+ ..+..+.|+++.|.+.+.++.+ |+..... .....+...|+++.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 46666666666654432 12222222 2333566666666666666654 2222221 2244566667777777777
Q ss_pred HHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH------HHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 195 RKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI------RVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
++..+. .|-+......+...+.+.|+++.+.+++..+.+.+..++.. ..|..++.......+.+...++++.
T Consensus 177 ~~~~~~--~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 177 DKLLEV--APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 666653 34445566666666666677777776666666654432111 1222333333334445555556665
Q ss_pred hhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh
Q 012879 269 ISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI 347 (454)
Q Consensus 269 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 347 (454)
+....| ++.....+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+..+...+. .+-|.
T Consensus 255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~--~P~~~ 328 (398)
T PRK10747 255 QSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ--HGDTP 328 (398)
T ss_pred CCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--CCCCH
Confidence 554433 5556666667777777777777777666653 3333211 223333446667777777666653 33344
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..+..+...+.+.|++++|.+.|+......|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55566666677777777777777776666666666666777777777777777777766543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.8e-13 Score=112.98 Aligned_cols=404 Identities=10% Similarity=0.047 Sum_probs=266.0
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHh--ccCCcchH-hHHHHHHHHcC--
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA--TLSHPNLG-TQLHAVISKVG-- 104 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~--~~~~~~~a-~~~~~~~~~~~-- 104 (454)
.+.+=|.|+. +..+|....+.-+|+.|. ..|+. . +...-..|++..+ .+.++--| .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~k-mIS~~EvKDs~ilY~~m~---~e~~~--v---S~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~ 185 (625)
T KOG4422|consen 115 QVETENNLLK-MISSREVKDSCILYERMR---SENVD--V---SEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED 185 (625)
T ss_pred hhcchhHHHH-HHhhcccchhHHHHHHHH---hcCCC--C---CHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc
Confidence 3445666665 456789999999999998 77766 4 5554445544422 22221111 12222222222
Q ss_pred -----------------CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 105 -----------------FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 105 -----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
.+-+..++.++|.+.++-...+.|.+++++... .+..+||.+|.+-.-..+ .+++
T Consensus 186 S~~sWK~G~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv 261 (625)
T KOG4422|consen 186 STSSWKSGAVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLV 261 (625)
T ss_pred cccccccccHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHH
Confidence 345667888999999998889999999888764 455677777765443333 4455
Q ss_pred hhCC----CCCcchHHHHHHHHHhcCChHH----HHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH-HHHHHHhhh
Q 012879 164 EEMP----CRNVVSWTGIIDGYTRMNRSNE----ALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS-CQLIHGYGE 234 (454)
Q Consensus 164 ~~~~----~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~ 234 (454)
.+|. .||..|+|+++.+..+.|+++. |.+++.+|.+. |+.|+..+|..++..+.+.++..+ +..++..+.
T Consensus 262 ~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKei-GVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 262 AEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEI-GVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh-CCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 5554 4899999999999999998765 46677888888 999999999999998888888744 333333333
Q ss_pred h----cC---CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc------CCCh---hhHHHHHHHHHhcCChhHHHHH
Q 012879 235 K----RG---FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE------RKNL---VSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 235 ~----~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~---~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
. .. ..|.+...|...+..|.+..+.+-|.++-.-+... +|+. .-|..+....++....+.-...
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 21 23445667777778888888888888876655543 2332 2355666777888888888899
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-Ch--------HH----
Q 012879 299 FGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG-RL--------EQ---- 365 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~--------~~---- 365 (454)
|+.|.-.-.-|+..+...++++....|.++-.-++|..++.- |..........+...+++.. .+ ..
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~-ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak 499 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY-GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAK 499 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 999988777888889999999988888888888888888765 54444444444444444433 11 00
Q ss_pred -HHHHHh-------cCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCcHH---HHHHHHHhcCCcCc
Q 012879 366 -AEKTAL-------GIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYV---LMYNILAGVGRFGD 432 (454)
Q Consensus 366 -A~~~~~-------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~---~l~~~~~~~g~~~~ 432 (454)
|..+++ ++....-.....+...-.+.+.|..++|-+++......+.. -.+..+ .+.+.-.+..+.-.
T Consensus 500 ~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 500 CAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred HHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 111111 12222234456667777788999999999999988765544 122333 34455556677888
Q ss_pred HHHHHHHHhhcccccC
Q 012879 433 AERLRRVMDERNAFKV 448 (454)
Q Consensus 433 a~~~~~~~~~~~~~~~ 448 (454)
|..+++-+...+....
T Consensus 580 A~~~lQ~a~~~n~~~~ 595 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPIC 595 (625)
T ss_pred HHHHHHHHHHcCchhh
Confidence 8888888877666544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.2e-12 Score=122.58 Aligned_cols=367 Identities=12% Similarity=0.037 Sum_probs=248.3
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
|.+...-.....+.-.|+.++|.+++.++. .+.+. ....|..|...|-..|+.+++...+-.+.-.+ +.|
T Consensus 137 ~~l~~ll~eAN~lfarg~~eeA~~i~~EvI---kqdp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d 206 (895)
T KOG2076|consen 137 PELRQLLGEANNLFARGDLEEAEEILMEVI---KQDPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKD 206 (895)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---HhCcc------chhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCC
Confidence 444444455555555699999999999988 66666 77789999999999998888887765544333 556
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCch---hHHHHHHHHHhcCCHHHHHHHHhhCCCCCc--------chHHHH
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLV---TWNVMITGLVKWGELEFARSLFEEMPCRNV--------VSWTGI 177 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~l 177 (454)
...|..+.....+.|+++.|.-+|.+..+.++. ..---...|-+.|+...|.+.|.++.+-++ ..--..
T Consensus 207 ~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~ 286 (895)
T KOG2076|consen 207 YELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRV 286 (895)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHH
Confidence 788888888888899999999999888763333 333445678888999998888888775222 122334
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC-----------------
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA----------------- 240 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------------- 240 (454)
++.+...++.+.|.+.++.....++-..+...+++++..+.+...++.+.............+
T Consensus 287 ~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~ 366 (895)
T KOG2076|consen 287 AHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNA 366 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccc
Confidence 566777777788888888877754556667778888888888888888887776665521111
Q ss_pred ---------chHHH-HHHHHHHHHhcCChhHHHHHHHHhhhcCC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 012879 241 ---------FDIRV-LNCLIDTYAKCGCIFSASKLFEDISVERK--NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLK 308 (454)
Q Consensus 241 ---------~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 308 (454)
.+..+ ...+.-...+.+...+++..|-......| +...|.-+..+|...|++..|+.+|..+.....-
T Consensus 367 ~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~ 446 (895)
T KOG2076|consen 367 LCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGY 446 (895)
T ss_pred cccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccc
Confidence 12222 11122222233334444433333322212 4556777888888889999999998888876444
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----------CC
Q 012879 309 PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE----------IT 378 (454)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~p 378 (454)
-+...|-.+..+|...|..++|.+.|+.+... -+.+...--.|...+.+.|+.++|.+++..+... .|
T Consensus 447 ~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~ 524 (895)
T KOG2076|consen 447 QNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEP 524 (895)
T ss_pred cchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccH
Confidence 46678888888888888889999888888864 2223445556777788889999888888886532 23
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
+....-.....+...|+.++-+.+...++
T Consensus 525 e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 525 ERRILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444445566677777776655555554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.8e-12 Score=113.86 Aligned_cols=400 Identities=11% Similarity=0.055 Sum_probs=260.5
Q ss_pred HHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHh
Q 012879 15 TQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGT 94 (454)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~ 94 (454)
.++++.-++.-| .++..|-..++ -.+.+.|.-++.+.. +- +|. +...| -++++..-++.|.
T Consensus 366 ~RVlRKALe~iP--~sv~LWKaAVe----lE~~~darilL~rAv---ec----cp~--s~dLw----lAlarLetYenAk 426 (913)
T KOG0495|consen 366 KRVLRKALEHIP--RSVRLWKAAVE----LEEPEDARILLERAV---EC----CPQ--SMDLW----LALARLETYENAK 426 (913)
T ss_pred HHHHHHHHHhCC--chHHHHHHHHh----ccChHHHHHHHHHHH---Hh----ccc--hHHHH----HHHHHHHHHHHHH
Confidence 455555555554 66666665543 455666888888876 32 231 33333 3455566677788
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--------CCchhHHHHHHHHHhcCCHHHHHHHHhhC
Q 012879 95 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--------RNLVTWNVMITGLVKWGELEFARSLFEEM 166 (454)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 166 (454)
.+++..++. ++-+..+|.+....--..|+.+...+++++-.. -+-..|-.=...|-..|..-.+..+....
T Consensus 427 kvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~av 505 (913)
T KOG0495|consen 427 KVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAV 505 (913)
T ss_pred HHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHH
Confidence 888888775 677888888888877888888888888776541 23344555555566666666666665554
Q ss_pred CC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 167 PC------RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 167 ~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
.. .--.||+.-...|.+.+.++-|..+|...++ -++.+...|......--..|..+....+++++... .|
T Consensus 506 igigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~p 581 (913)
T KOG0495|consen 506 IGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CP 581 (913)
T ss_pred HhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CC
Confidence 32 1234677777777777777777777777776 44555566666666556667777777777777775 45
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.....|......+-..|++..|..++..+.+..| +...|-..+..-..+.+++.|..+|.+.... .|+...|..-+.
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSAN 659 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhH
Confidence 4566666666667777777777777777766655 4456666667777777777777777766653 456666655555
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhH
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 398 (454)
.--..++.++|.+++++..+. ++.-...|..+...+-+.++++.|.+.|..-....|+ +..|-.|...--+.|..-+
T Consensus 660 ~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~r 737 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVR 737 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhh
Confidence 555567777777777777663 3333455666667777777777777777766666444 3455555555566677777
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 399 GERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
|..++++..-.+|.+...|...+++-.+.|+.+.|..++.+..+
T Consensus 738 AR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 738 ARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777766655443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-13 Score=115.29 Aligned_cols=353 Identities=12% Similarity=0.097 Sum_probs=194.3
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.+..+|.++|.++|+-...++|.+++.+.. ....+ . +..+||.+|.+-.-... .+++.+|....+.||
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~---~~k~k--v---~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHR---AAKGK--V---YREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHH---Hhhhe--e---eHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 677899999999999999999999998887 55555 5 88899998887554332 788888988888999
Q ss_pred chhHHHHHHHHHhCCChhHHHHHH----hhCC----CCCchhHHHHHHHHHhcCCHHH-HHHHHhhCCC-----------
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLF----DEMP----ERNLVTWNVMITGLVKWGELEF-ARSLFEEMPC----------- 168 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~----~~~~----~~~~~~~~~ll~~~~~~~~~~~-A~~~~~~~~~----------- 168 (454)
..|+|+++.+..+.|+++.|.+.+ .+|. +|...+|..+|..+++.++..+ |..++..+..
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 999999999999999887765544 3333 3667777777777777666544 2333322210
Q ss_pred -CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcc---CCCCCh---hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc
Q 012879 169 -RNVVSWTGIIDGYTRMNRSNEALALFRKMVACE---YTEPSE---ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF 241 (454)
Q Consensus 169 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 241 (454)
.|...|...+..|.+..+.+-|.++-.-..... .+.|+. ..|..+....+.....+.....|+.++-.-..|
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p- 431 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFP- 431 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecC-
Confidence 122334445555555555555554433332210 111211 123333344444444444444444444433333
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH---HHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV---TFLSVL 318 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~ 318 (454)
+..+...++++..-.|.++-.-+++.++... ...-+-+--++++..|....+.|+.. -+....
T Consensus 432 ~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~--------------ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 432 HSQTMIHLLRALDVANRLEVIPRIWKDSKEY--------------GHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred CchhHHHHHHHHhhcCcchhHHHHHHHHHHh--------------hhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 4444444444444444444444444443331 00001111122222222222222211 111111
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C---CcHhHHHHHHHHHHc
Q 012879 319 NACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---I---TDVVVWRTLLGACSF 392 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---p~~~~~~~l~~~~~~ 392 (454)
.-|. ..-.+.....-.++.+. .+ .....+.+.-.+.+.|+.++|.+++.-+..+ . |.....--+++....
T Consensus 498 ak~a-ad~~e~~e~~~~R~r~~-~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~ 573 (625)
T KOG4422|consen 498 AKCA-ADIKEAYESQPIRQRAQ-DW--PATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKV 573 (625)
T ss_pred HHHH-HHHHHHHHhhHHHHHhc-cC--ChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHh
Confidence 1110 00011111122233332 33 3456677777889999999999988877433 3 333344456677778
Q ss_pred CCChhHHHHHHHHHHHhhcC
Q 012879 393 HGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~ 412 (454)
.++...|+.+++-|.+.+..
T Consensus 574 ~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 574 SNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred cCCHHHHHHHHHHHHHcCch
Confidence 88899999999988765444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=4e-13 Score=123.88 Aligned_cols=285 Identities=12% Similarity=-0.024 Sum_probs=179.8
Q ss_pred HhCCChhHHHHHHhhCCC--CCch-hHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcc--hHHHHHHHHHhcCChHHHHH
Q 012879 120 VSLGFLKDSSKLFDEMPE--RNLV-TWNVMITGLVKWGELEFARSLFEEMPC--RNVV--SWTGIIDGYTRMNRSNEALA 192 (454)
Q Consensus 120 ~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~--~~~~l~~~~~~~~~~~~a~~ 192 (454)
...|+++.|.+.+.+..+ |+.. .+-....+..+.|+.+.|.+.+.+..+ |+.. ........+...|+++.|..
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 356788888877776654 3322 233334556677888888888877543 3332 23334677777888888888
Q ss_pred HHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH---HHHhcCChhHHHHHHHHh
Q 012879 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID---TYAKCGCIFSASKLFEDI 269 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~ 269 (454)
.++.+.+. .|-+...+..+...+...|+++.+.+.+..+.+.+..++.. ....-.. .....+..+.+.+.+..+
T Consensus 175 ~l~~l~~~--~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~-~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 175 GVDKLLEM--APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEE-FADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888774 34456677777888888888888888888888775433121 1111111 112222222222333333
Q ss_pred hhcC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH--H-HHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 270 SVER-----KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT--F-LSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 270 ~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--~-~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
.... .++..+..+...+...|+.++|.+++++..+.. |+... + ..........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 3322 266777778888888888888888888887753 33321 1 111122334567777888887777642
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhc--CCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALG--IPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.-.|+.....++...+.+.|++++|.+.|+. ..+..|+...+..+...+.+.|+.++|.+++++.+..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2222215566778888888888888888883 4444678777888888888888888888888876543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-12 Score=113.42 Aligned_cols=302 Identities=13% Similarity=0.126 Sum_probs=200.0
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCC------CchhHHHHHHHHHhcCCHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPER------NLVTWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~~~~~A~ 160 (454)
....+++.+-.+.....|++.+...-+....+.-...|+|+|+.+|+++.+. |..+|..++-.--....+.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 3345566666666666676655555555555556677888888888888763 3346665553333322222222
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 161 SLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
...-.+.+--+.|...+.+-|.-.++.++|...|++.++. .+.....|+.+..-|....+...|.+.++.+++. .|
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p 395 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NP 395 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cc
Confidence 2222333445567777777788888888888888888773 3444667777778888888888888888888875 56
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.|-..|..|.++|.-.+...-|+-.|++....+| |...|.+|..+|.+.++.++|++.|.+....|-. +...+..|..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~Lak 474 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAK 474 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHH
Confidence 6788888888888888888888888888887766 7778888888888888888888888888776533 5567778888
Q ss_pred HHhcCCChHHHHHHHHHHHHhc---CC-CC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEEC---EV-LP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~---~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 394 (454)
.|-+.++.++|...|+...+.. |. .| ......-|..-+.+.+++++|..+......- ..
T Consensus 475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~----------------~~ 538 (559)
T KOG1155|consen 475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG----------------ET 538 (559)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC----------------Cc
Confidence 8888888888888777766531 22 22 1222233455566777777766544433221 23
Q ss_pred ChhHHHHHHHHHHHh
Q 012879 395 NVEMGERVTRKILEM 409 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~ 409 (454)
..++|..++++....
T Consensus 539 e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 ECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHHHHHHHHh
Confidence 445666666666543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.3e-13 Score=110.99 Aligned_cols=286 Identities=14% Similarity=0.088 Sum_probs=180.8
Q ss_pred CChhHHHHHHhhCCCCCchhHH---HHHHHHHhcCCHHHHHHHHhhCCC-CCcc------hHHHHHHHHHhcCChHHHHH
Q 012879 123 GFLKDSSKLFDEMPERNLVTWN---VMITGLVKWGELEFARSLFEEMPC-RNVV------SWTGIIDGYTRMNRSNEALA 192 (454)
Q Consensus 123 g~~~~a~~~~~~~~~~~~~~~~---~ll~~~~~~~~~~~A~~~~~~~~~-~~~~------~~~~l~~~~~~~~~~~~a~~ 192 (454)
++.|+|.+.|-+|.+.|..|+. ++.+.|-+.|..+.|+.+.+.+.+ ||.. ..-.|..-|...|-++.|..
T Consensus 49 ~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~ 128 (389)
T COG2956 49 NQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAED 128 (389)
T ss_pred cCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 3444444444444443333222 233444444444444444444432 2211 22234455566666666666
Q ss_pred HHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch---HHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012879 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD---IRVLNCLIDTYAKCGCIFSASKLFEDI 269 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~ 269 (454)
+|..+.+.+ ..-......|+..|-...+|++|++.-+++.+.+..+.. ...|..|...+....+++.|..++.+.
T Consensus 129 ~f~~L~de~--efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 129 IFNQLVDEG--EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHhcch--hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 666665531 122334556666666666666666666666665544322 235666777777788899999999988
Q ss_pred hhcCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChh
Q 012879 270 SVERKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIK 348 (454)
Q Consensus 270 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 348 (454)
.+..|+.+ .--.+.......|++++|.+.++...+.+..--+.+...|..+|.+.|+.++...++..+.+. .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 88766444 333455778889999999999999888866666677888889999999999999999988865 33444
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc---CCChhHHHHHHHHHHHhhcCC
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF---HGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 413 (454)
.-..+.+.-....-.+.|...+.+-....|+...+..++..... -|...+-...+++|+......
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 44555555555666677777766666666999999999887654 345666677777777655443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-14 Score=129.82 Aligned_cols=283 Identities=12% Similarity=-0.025 Sum_probs=221.6
Q ss_pred CCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCC-CChhhHHhHHHHHHccCchhHHHHH
Q 012879 154 GELEFARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTE-PSEITILAVLPAIWQNGDVKSCQLI 229 (454)
Q Consensus 154 ~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~ 229 (454)
-+..+|...|..+.+ +| ......+.++|...+++++|.++|+.+.+..... -+..+|.+.+..+-+.-. --.+
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~---Ls~L 409 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVA---LSYL 409 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHH---HHHH
Confidence 356788888888654 33 3455678889999999999999999998753322 345677777766533211 1122
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 012879 230 HGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLK 308 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 308 (454)
-+.+.+. .|..+.+|.++.++|.-.++.+.|++.|++..+..| ...+|+.+..-+.....+|.|...|+..+.. .
T Consensus 410 aq~Li~~--~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~ 485 (638)
T KOG1126|consen 410 AQDLIDT--DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--D 485 (638)
T ss_pred HHHHHhh--CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--C
Confidence 3333333 466899999999999999999999999999999877 6778888888899999999999999987753 2
Q ss_pred C-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHH
Q 012879 309 P-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRT 385 (454)
Q Consensus 309 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~ 385 (454)
| +-..|-.+...|.+.++++.|+-.|+.+.+ +.|. .+....+...+.+.|+.++|+++++++... +-|+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 2 223455566789999999999999999984 4554 556677788889999999999999998776 335555555
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
.+..+...+++++|+..++++.+.-|++..++..++..|.+.|+.+.|..-|.-+.+.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6777788899999999999999999999999999999999999999999888777665544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.5e-13 Score=123.63 Aligned_cols=276 Identities=14% Similarity=0.115 Sum_probs=215.8
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHH--HHHHHHHh
Q 012879 44 AESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT--ALVNMYVS 121 (454)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 121 (454)
.|++++|.+.+.... ..... | ...|.....+....|+++.|.+.+.++.+. .|+..... .....+..
T Consensus 97 eGd~~~A~k~l~~~~---~~~~~--p----~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 97 EGDYQQVEKLMTRNA---DHAEQ--P----VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLA 165 (398)
T ss_pred CCCHHHHHHHHHHHH---hcccc--h----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHH
Confidence 799999998888775 33222 2 223444455558999999999999999874 45554332 44678899
Q ss_pred CCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCC---c--------chHHHHHHHHHhcCCh
Q 012879 122 LGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFEEMPCRN---V--------VSWTGIIDGYTRMNRS 187 (454)
Q Consensus 122 ~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~---~--------~~~~~l~~~~~~~~~~ 187 (454)
.|+++.|...++++.+ | +......+...|.+.|++++|.+++..+.+.. . .+|..++.......+.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~ 245 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGS 245 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 9999999999999885 4 45678889999999999999999999887522 1 1333444444455666
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 267 (454)
+...++++...+ ..+.++.....+...+...|+.++|..++++..+. .+ ++... ++.+....++.+++.+..+
T Consensus 246 ~~l~~~w~~lp~--~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~-~~~l~--~l~~~l~~~~~~~al~~~e 318 (398)
T PRK10747 246 EGLKRWWKNQSR--KTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY-DERLV--LLIPRLKTNNPEQLEKVLR 318 (398)
T ss_pred HHHHHHHHhCCH--HHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC-CHHHH--HHHhhccCCChHHHHHHHH
Confidence 777777777755 34567888999999999999999999999999884 22 54322 3334445699999999999
Q ss_pred HhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 268 DISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 268 ~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
+..+..| |...+..+...+.+.+++++|.+.|+.+.+. .|+..++..+...+.+.|+.++|.+++++...
T Consensus 319 ~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 319 QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9998877 5667888999999999999999999999985 68999999999999999999999999998764
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-14 Score=127.04 Aligned_cols=280 Identities=11% Similarity=0.046 Sum_probs=162.6
Q ss_pred ChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCC--CCCchhHHHHHHHHHhCC
Q 012879 46 SPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGF--QSHVYVNTALVNMYVSLG 123 (454)
Q Consensus 46 ~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 123 (454)
+..+|+..|.... ..... +......+.++|-..+++++|.++|+.+.+... .-+..+|.+.+..+-+.=
T Consensus 334 ~~~~A~~~~~klp---~h~~n------t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLP---SHHYN------TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV 404 (638)
T ss_pred HHHHHHHHHHhhH---HhcCC------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH
Confidence 4456666666643 33333 445566666666677777777777776665321 123445555554332221
Q ss_pred ChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 012879 124 FLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200 (454)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (454)
...---+-+-.+....+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.
T Consensus 405 ~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~- 483 (638)
T KOG1126|consen 405 ALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG- 483 (638)
T ss_pred HHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc-
Confidence 1111111111222344566777777777777777777777666653 335666666666666667777777766654
Q ss_pred cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhH
Q 012879 201 EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSW 279 (454)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ 279 (454)
..+-+-..|.-+.-.|.+.++++.|+-.|+++.+. .|.+......+...+.+.|+.++|+.+|+++....| |+..-
T Consensus 484 -~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~ 560 (638)
T KOG1126|consen 484 -VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCK 560 (638)
T ss_pred -CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhH
Confidence 11222233444555666777777777777766664 455666666666677777777777777777666544 55554
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 280 TSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 280 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
-..+..+...+++++|+..++++++. ++-+...|..+...|-+.|+.+.|..-|.-+..
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ 619 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALD 619 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence 45556666667777777777777664 222344555566667777777777766666653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-12 Score=120.29 Aligned_cols=282 Identities=11% Similarity=-0.062 Sum_probs=159.6
Q ss_pred ccCCcchHhHHHHHHHHcCCCCCch-hHHHHHHHHHhCCChhHHHHHHhhCCC--CCch--hHHHHHHHHHhcCCHHHHH
Q 012879 86 TLSHPNLGTQLHAVISKVGFQSHVY-VNTALVNMYVSLGFLKDSSKLFDEMPE--RNLV--TWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 86 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~--~~~~ll~~~~~~~~~~~A~ 160 (454)
..|+++.|.+.+....+.. |++. .+-....++...|+.+.|.+.+.+..+ |+.. ........+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4555555555555544432 2222 223334445555666666666555432 2221 2222345555666666666
Q ss_pred HHHhhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHH----hHHHHHHccCchhHHHHHHHhh
Q 012879 161 SLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITIL----AVLPAIWQNGDVKSCQLIHGYG 233 (454)
Q Consensus 161 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~ 233 (454)
..++.+.+ | ++..+..+...+...|++++|.+.+....+. +.. +...+. .........+..+.+.+.+..+
T Consensus 174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~-~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA-GLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666553 2 3345556666666677777777777766665 322 222221 1111112222222222333333
Q ss_pred hhcCC--CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhH---HHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 012879 234 EKRGF--TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSW---TSIISGFAMHGMGKEAVENFGRMQKVGLK 308 (454)
Q Consensus 234 ~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 308 (454)
.+... .+.++..+..++..+...|+.++|.+++++..+..||.... ..........++.+.+.+.+++..+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 22210 12367777888888888888888888888888776654421 112222234567777888887776642 2
Q ss_pred CcH--HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 309 PNR--VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 309 p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
-|. ....++...+.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233 44556777788888888888888853333 44678777888888888888888888888764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.8e-13 Score=118.31 Aligned_cols=396 Identities=12% Similarity=0.063 Sum_probs=253.7
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhH-HHHHHHHhccCCcchHhHHHHHHHHcCCCCC----c
Q 012879 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTY-SFLIRTCATLSHPNLGTQLHAVISKVGFQSH----V 109 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~ 109 (454)
..|.+.|..+.-+.+|+..|+-+. +...- | +...+ -.+.+.+.+.+++.+|++.|+..+..-...+ +
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiiv---knkmf--~---nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~ri 276 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIV---KNKMF--P---NAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRI 276 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhh---ccccc--C---CCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHH
Confidence 344555666777788999888887 44433 5 44332 2345567788889999999988776422222 2
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----------------CCc
Q 012879 110 YVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELEFARSLFEEMPC----------------RNV 171 (454)
Q Consensus 110 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----------------~~~ 171 (454)
.+.+.+.-.+.+.|+++.|+..|+...+ |+..+--.++-++..-|+-++..+.|..|.. |+.
T Consensus 277 kil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~ 356 (840)
T KOG2003|consen 277 KILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDD 356 (840)
T ss_pred HHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcch
Confidence 3455555678899999999999999875 7766655566666677888888888888752 111
Q ss_pred chHHHHH-----HHHHhc--CChHHHHHHHHHHHHccCCCCChhh-------------HH--------hHHHHHHccCch
Q 012879 172 VSWTGII-----DGYTRM--NRSNEALALFRKMVACEYTEPSEIT-------------IL--------AVLPAIWQNGDV 223 (454)
Q Consensus 172 ~~~~~l~-----~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-------------~~--------~l~~~~~~~~~~ 223 (454)
...+.-+ +-.-+. .+.++++-.-.++... .+.|+-.. +. .-...+.+.|++
T Consensus 357 ~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiap-vi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 357 NLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAP-VIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred HHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhcc-ccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 1122111 111111 1112222221222211 22222110 00 112235566666
Q ss_pred hHHHHHHHhhhhcCCCCc-----------------------------------hHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 224 KSCQLIHGYGEKRGFTAF-----------------------------------DIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+.|.++++.+.+...... ++.....-.+.....|++++|.+.|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 666666666555422211 122222222223345788888888888
Q ss_pred hhhcCCChhhHHH---HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC
Q 012879 269 ISVERKNLVSWTS---IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP 345 (454)
Q Consensus 269 ~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 345 (454)
.... |...-.+ +.-.+-..|+.++|++.|-++..- +..+...+..+...|....++.+|++++.+... -++.
T Consensus 516 al~n--dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~ 590 (840)
T KOG2003|consen 516 ALNN--DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN 590 (840)
T ss_pred HHcC--chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC
Confidence 8773 3332222 233456778999999988776542 233666777788888888899999999888764 4666
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
|+.+...|.+.|-+.|+-..|.+..-+-... +.+..+..=|..-|....-+++++.+|+++.-..|.....-..++.++
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 7888999999999999999998876554444 446777777777788888899999999999877776555555678888
Q ss_pred HhcCCcCcHHHHHHHHhhcc
Q 012879 425 AGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~~ 444 (454)
.+.|+++.|.++++.+..+-
T Consensus 671 rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 671 RRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred HhcccHHHHHHHHHHHHHhC
Confidence 99999999999999987653
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-12 Score=113.66 Aligned_cols=328 Identities=12% Similarity=0.078 Sum_probs=245.1
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-hHHHHHHHHHhc
Q 012879 106 QSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV-SWTGIIDGYTRM 184 (454)
Q Consensus 106 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~ 184 (454)
..|...+-.....+.+.|..+.|+..|......-+..|.+-+...--..+.+.+..+.......+.. .---+..++...
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el 240 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQEL 240 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHH
Confidence 3444444444445667788888888888877655556665555555555555555544444432211 112244567777
Q ss_pred CChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc---hHHHHHHHHHHHHhcCChhH
Q 012879 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF---DIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~ 261 (454)
.+.++++.-.+..... |++.+...-+....+.....|+++|+.+|+++.+. .|. |..+|..++-.-.....+.-
T Consensus 241 ~q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn--DPYRl~dmdlySN~LYv~~~~skLs~ 317 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN--DPYRLDDMDLYSNVLYVKNDKSKLSY 317 (559)
T ss_pred HHHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcchhHHHHhHHHHHHhhhHHHHH
Confidence 7889998888888876 77777777777777778889999999999999987 342 55677666543332222211
Q ss_pred -HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 262 -ASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 262 -a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
|..+++ +. +--+.|..++..-|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|++-++.+.+-
T Consensus 318 LA~~v~~-id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi 393 (559)
T KOG1155|consen 318 LAQNVSN-ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDI 393 (559)
T ss_pred HHHHHHH-hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhc
Confidence 222211 11 134567788888888899999999999999987533 4567777888999999999999999999863
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHH
Q 012879 341 CEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 419 (454)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (454)
-+.|-..|-.|.++|.-.+.+.-|+-+|++.... +.|...|..|.++|.+.++.++|+..|.+++..+..+...+..
T Consensus 394 --~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~ 471 (559)
T KOG1155|consen 394 --NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR 471 (559)
T ss_pred --CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence 3457788999999999999999999999999887 5578999999999999999999999999999988888889999
Q ss_pred HHHHHHhcCCcCcHHHHHHHHhh
Q 012879 420 MYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
++.+|.+.++.++|...+++.++
T Consensus 472 LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 99999999999999999988776
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-12 Score=108.25 Aligned_cols=280 Identities=13% Similarity=0.110 Sum_probs=193.8
Q ss_pred cCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc------hhHHHHHH
Q 012879 44 AESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV------YVNTALVN 117 (454)
Q Consensus 44 ~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~ 117 (454)
++++++|+++|-+|. +..+. +..+--+|.+.|.+.|..++|++++..+.++ ||. .....|..
T Consensus 48 s~Q~dKAvdlF~e~l---~~d~~------t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 48 SNQPDKAVDLFLEML---QEDPE------TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGR 115 (389)
T ss_pred hcCcchHHHHHHHHH---hcCch------hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHH
Confidence 467788888888887 55544 6667778888888888888888888887763 332 23344666
Q ss_pred HHHhCCChhHHHHHHhhCCC-C--CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--------hHHHHHHHHHhcCC
Q 012879 118 MYVSLGFLKDSSKLFDEMPE-R--NLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV--------SWTGIIDGYTRMNR 186 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~-~--~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~l~~~~~~~~~ 186 (454)
-|...|-+|.|+.+|..+.+ + -......++..|-...+|++|+++-+++..-+.. .|..+...+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 67788888888888888876 3 2346677888888888888888887766543333 34444555556677
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHH
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLF 266 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 266 (454)
.+.|..++.+..+. .+.....-..+.+.....|++..|.+.++.+.+.+.. .-+.+...|..+|...|+.++....+
T Consensus 196 ~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~-yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 196 VDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE-YLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred HHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 88888888888763 2333444455666778888888888888888877422 24566777888888888888888888
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc---CCChHHHHHHHHHHHHh
Q 012879 267 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH---GGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~ 340 (454)
.++.+..+....-..+...-....-.+.|..++.+-... +|+...+..++..... .|...+-...++.|...
T Consensus 273 ~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 273 RRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred HHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 888777666666666666555555666666666655554 5788888878766543 23345555566666544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-11 Score=106.87 Aligned_cols=384 Identities=9% Similarity=-0.064 Sum_probs=258.4
Q ss_pred CCchhHHHHHHHHhhhhhhhh-hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC
Q 012879 10 PNNITTQIHSHLLTTNSLLHH-SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 88 (454)
..+.+...|.+-.+.. || ++-|.....+|..-|+|++.++--.... +..+. -+..+..-.+++-..|
T Consensus 130 kY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkAL---El~P~------Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKAL---ELNPD------YVKALLRRASAHEQLG 197 (606)
T ss_pred cHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHh---hcCcH------HHHHHHHHHHHHHhhc
Confidence 3456667777776665 55 8899999999999999999998888777 55544 4456666677777888
Q ss_pred CcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHH------------------
Q 012879 89 HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMI------------------ 147 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll------------------ 147 (454)
++++|+.-.....-.+--.|..+--.+=+.+-+.| ...+.+-+.+=.. |+.....+..
T Consensus 198 ~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a-~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks 276 (606)
T KOG0547|consen 198 KFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA-MKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS 276 (606)
T ss_pred cHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH-HHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence 88777654443322221112222111111111111 1223333331111 1111111111
Q ss_pred -----HHHH--hcC---CHHHHHHHHhhCC-------CCC---------cchHHHHHHHHHhcCChHHHHHHHHHHHHcc
Q 012879 148 -----TGLV--KWG---ELEFARSLFEEMP-------CRN---------VVSWTGIIDGYTRMNRSNEALALFRKMVACE 201 (454)
Q Consensus 148 -----~~~~--~~~---~~~~A~~~~~~~~-------~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (454)
.++. ..+ .+..|.+.+.+-. ..+ ..+.......+.-.|+...|..-|+..++.
T Consensus 277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l- 355 (606)
T KOG0547|consen 277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL- 355 (606)
T ss_pred hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc-
Confidence 1110 011 2333333332211 111 112222223455678999999999999984
Q ss_pred CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHH
Q 012879 202 YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWT 280 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 280 (454)
.+.+...|.-+...|....+.++....|+...+. .|.++.+|..-...+.-.+++++|..-|++.....| +...|-
T Consensus 356 -~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i 432 (606)
T KOG0547|consen 356 -DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI 432 (606)
T ss_pred -CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence 2333334888888999999999999999999987 577888999999999999999999999999999766 566777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC------CCChhHHHHHH
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV------LPDIKHYGCLI 354 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~ 354 (454)
-+.-+..+.+++++++..|++.++. .+-.+..|+.....+...++++.|.+.|+..+..-.. .+.+.+-..++
T Consensus 433 Ql~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l 511 (606)
T KOG0547|consen 433 QLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALL 511 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHh
Confidence 7777778899999999999999886 4556788999999999999999999999999864111 11222223333
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 355 DMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
-.-.+ +++..|.+++++..+..| ....|..|...-.+.|+.++|+++|++....-..
T Consensus 512 ~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 512 VLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred hhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 32233 899999999999998844 3568999999999999999999999998876544
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-11 Score=103.32 Aligned_cols=280 Identities=13% Similarity=0.032 Sum_probs=197.9
Q ss_pred CCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC--C--cchHHHHHHHHHhcCChHHHHHHH
Q 012879 122 LGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWGELEFARSLFEEMPCR--N--VVSWTGIIDGYTRMNRSNEALALF 194 (454)
Q Consensus 122 ~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~a~~~~ 194 (454)
.|++..|++...+-.+. ....|..-..+.-+.|+.+.+-.++.+..++ | ...+-+..+.....|+++.|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 57777777777665431 2233444445566677777777777776653 2 234455556677777777777777
Q ss_pred HHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch------HHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 195 RKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD------IRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
.+..+. .+-+.........+|.+.|++.....+...+.+.|..... ..+|..+++-....+..+.-...++.
T Consensus 177 ~~ll~~--~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEM--TPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 777763 3455666777777777777777777777777777655421 23566666666666666666667777
Q ss_pred hhhc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh
Q 012879 269 ISVE-RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI 347 (454)
Q Consensus 269 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 347 (454)
.... +.++..-..++.-+.+.|+.++|.++..+..+.+..|+ . ...-.+.+-++.+.-++..+.-.+..+.. +
T Consensus 255 ~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p 328 (400)
T COG3071 255 QPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPED--P 328 (400)
T ss_pred ccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCCC--h
Confidence 7665 34566777788888889999999999888888766665 2 22234567788888888887777753444 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..+.+|...|.+.+.+.+|.+.|+...+..|+..+|..+..++.+.|+..+|.+..++.+..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67788888899999999999999988777889999999999999999999999988888744
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-11 Score=109.79 Aligned_cols=396 Identities=11% Similarity=-0.024 Sum_probs=280.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHH----HHHcC--
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAV----ISKVG-- 104 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-- 104 (454)
+.----+.+++.-.|.+++|..+...-. -. - - |..+......++.+..++++|..++.. .....
T Consensus 49 p~d~~~~aq~l~~~~~y~ra~~lit~~~---le-~---~---d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy 118 (611)
T KOG1173|consen 49 PADIYWLAQVLYLGRQYERAAHLITTYK---LE-K---R---DIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYY 118 (611)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHhh---hh-h---h---hHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhc
Confidence 3333446666777777777777665543 11 1 2 677777888888888889998888872 11100
Q ss_pred -------CCCCchh-----------HHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHH---HHh-----------
Q 012879 105 -------FQSHVYV-----------NTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITG---LVK----------- 152 (454)
Q Consensus 105 -------~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~---~~~----------- 152 (454)
+.+|..- +-.-...|....+.++|...|.+....|+..|..+... ..-
T Consensus 119 ~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~ 198 (611)
T KOG1173|consen 119 EKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLES 198 (611)
T ss_pred chhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhc
Confidence 0111111 11111234455667788888877766665555443322 110
Q ss_pred -------cCCHHHHHHHHhhC----C----------------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCC
Q 012879 153 -------WGELEFARSLFEEM----P----------------CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEP 205 (454)
Q Consensus 153 -------~~~~~~A~~~~~~~----~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (454)
.-+.+.-..+|+-. . +.+.........-+...+++.+..++.+...+ ..++
T Consensus 199 l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle--~dpf 276 (611)
T KOG1173|consen 199 LDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLE--KDPF 276 (611)
T ss_pred ccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHh--hCCC
Confidence 11122222223211 1 02334444555667788999999999999998 5677
Q ss_pred ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHH
Q 012879 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIIS 284 (454)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~ 284 (454)
....+..-+.++...|+..+-..+-..+++. .|..+.+|-++.-.|.-.|+.++|.+.|.+.....|. ...|-....
T Consensus 277 h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fgh 354 (611)
T KOG1173|consen 277 HLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGH 354 (611)
T ss_pred CcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhH
Confidence 7777777788999999999988888888887 6778899999999999999999999999999886553 457889999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
+|+-.|..++|+..+...-+.=.. ....+--+.--|.+.++.+.|.++|..... -.+.|+.+.+-+.-.....+.+.
T Consensus 355 sfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~ 431 (611)
T KOG1173|consen 355 SFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYP 431 (611)
T ss_pred HhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhH
Confidence 999999999999999887663111 111222334457788999999999999874 23445677777766677788999
Q ss_pred HHHHHHhcCCCC-------CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHH
Q 012879 365 QAEKTALGIPSE-------IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERL 436 (454)
Q Consensus 365 ~A~~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (454)
+|..+|+..... .+ -..+++.|..+|.+.+.+++|+..+++++...|.+..++.+++-+|...|+++.|.+.
T Consensus 432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHH
Confidence 999998876632 11 2356888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q 012879 437 RRVMDER 443 (454)
Q Consensus 437 ~~~~~~~ 443 (454)
|.+....
T Consensus 512 fhKaL~l 518 (611)
T KOG1173|consen 512 FHKALAL 518 (611)
T ss_pred HHHHHhc
Confidence 8876543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-12 Score=110.41 Aligned_cols=201 Identities=12% Similarity=0.071 Sum_probs=156.3
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
....+..+...+...|++++|.+.+++.....| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788888888888888888888877655 45677777788888888888888888887754 2345566777778
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 399 (454)
+...|++++|.+.++..............+..+..++...|++++|.+.+++.....| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888888876422223345667778888889999999998888777633 456778888888899999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.+.++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999998886666677777888888899999999888877553
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=6.3e-12 Score=120.46 Aligned_cols=266 Identities=13% Similarity=0.047 Sum_probs=194.1
Q ss_pred CcchHHHHHHHHHh-----cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHH---------ccCchhHHHHHHHhhhh
Q 012879 170 NVVSWTGIIDGYTR-----MNRSNEALALFRKMVACEYTEPSEITILAVLPAIW---------QNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 170 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 235 (454)
+...|...+++... .+..++|...|++..+. .+-+...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44555566665322 23467999999999874 3334555665555443 23458899999999998
Q ss_pred cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH
Q 012879 236 RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTF 314 (454)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 314 (454)
. .|.+...+..+..++...|++++|...|++..+..| +...+..+...+...|++++|+..+++..+.... +...+
T Consensus 333 l--dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~ 409 (553)
T PRK12370 333 L--DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG 409 (553)
T ss_pred c--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence 7 577899999999999999999999999999999877 5667888899999999999999999999986433 22233
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-hHHHHHHHHHHcC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-VVWRTLLGACSFH 393 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~ 393 (454)
..++..+...|++++|...++++.+. .-+.++..+..+..++...|++++|...++++....|+. ...+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 33444566689999999999998764 222245557778888999999999999999987765554 4455566667777
Q ss_pred CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
| ++|...++++.+.....+.........+.-.|+.+.+... +++.+.+
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 7 4788888887765444333333366666667887777766 7777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.3e-11 Score=103.05 Aligned_cols=294 Identities=13% Similarity=0.128 Sum_probs=234.4
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV 111 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 111 (454)
.+-..+++.. .|+|.+|.++..+.. +.+.. ....|..-.++.-..|+.+.+-+++.+..+..-.++...
T Consensus 87 ~~~egl~~l~--eG~~~qAEkl~~rna---e~~e~------p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v 155 (400)
T COG3071 87 ALNEGLLKLF--EGDFQQAEKLLRRNA---EHGEQ------PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAV 155 (400)
T ss_pred HHHHHHHHHh--cCcHHHHHHHHHHhh---hcCcc------hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHH
Confidence 3444444443 799999999999877 77766 355677777888899999999999999988644667777
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----C-------cchHHHH
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPCR----N-------VVSWTGI 177 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~-------~~~~~~l 177 (454)
+-+..+.....|+.+.|..-++++.+ ..+........+|.+.|++.....++..+.+. + ..+|+.+
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 88888889999999999998887764 56778999999999999999999999998862 1 2478888
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
++-....+..+.-...+++... ..+.++..-..++.-+.+.|+.+.|.++.++..+.+..+ . -...-...+-+
T Consensus 236 L~q~~~~~~~~gL~~~W~~~pr--~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~----L~~~~~~l~~~ 308 (400)
T COG3071 236 LQQARDDNGSEGLKTWWKNQPR--KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDP-R----LCRLIPRLRPG 308 (400)
T ss_pred HHHHhccccchHHHHHHHhccH--HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccCh-h----HHHHHhhcCCC
Confidence 8888888888887778888766 445667777788889999999999999999999987655 2 11222345566
Q ss_pred ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 258 CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
+...-++..++-....| ++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|+..+|.+..++
T Consensus 309 d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 309 DPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred CchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 77776666666655544 6678899999999999999999999987775 78999999999999999999999999998
Q ss_pred HHHhcCCCCC
Q 012879 337 MVEECEVLPD 346 (454)
Q Consensus 337 ~~~~~~~~~~ 346 (454)
.... -.+|+
T Consensus 387 ~L~~-~~~~~ 395 (400)
T COG3071 387 ALLL-TRQPN 395 (400)
T ss_pred HHHH-hcCCC
Confidence 8754 33443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.1e-11 Score=115.80 Aligned_cols=275 Identities=12% Similarity=0.056 Sum_probs=176.7
Q ss_pred HHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHH
Q 012879 52 LLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKL 131 (454)
Q Consensus 52 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 131 (454)
.++-.+. ..|+. | +..||..+|..|+..|+.+.|- +|..|.....+-+...++.++......++.+.+.
T Consensus 11 nfla~~e---~~gi~--P---nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-- 79 (1088)
T KOG4318|consen 11 NFLALHE---ISGIL--P---NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-- 79 (1088)
T ss_pred hHHHHHH---HhcCC--C---chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--
Confidence 3455566 78888 8 9999999999999999999998 9999988888888889999999888888887765
Q ss_pred HhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHH
Q 012879 132 FDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITIL 211 (454)
Q Consensus 132 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 211 (454)
+|...+|..+..+|...||+.. .+..++ -...+...+...|.-.....++..+.-.++..||..+
T Consensus 80 -----ep~aDtyt~Ll~ayr~hGDli~-fe~veq-------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n-- 144 (1088)
T KOG4318|consen 80 -----EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN-- 144 (1088)
T ss_pred -----CCchhHHHHHHHHHHhccchHH-HHHHHH-------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH--
Confidence 7888899999999999998765 222222 1223444555555555555555554333344454433
Q ss_pred hHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh-cCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcC
Q 012879 212 AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK-CGCIFSASKLFEDISVERKNLVSWTSIISGFAMHG 290 (454)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 290 (454)
.+.-....|-++.+.+++..+....... +... +++-... ...+++-........+ .|++.+|.+++.+-..+|
T Consensus 145 -~illlv~eglwaqllkll~~~Pvsa~~~--p~~v--fLrqnv~~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 -AILLLVLEGLWAQLLKLLAKVPVSAWNA--PFQV--FLRQNVVDNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAG 218 (1088)
T ss_pred -HHHHHHHHHHHHHHHHHHhhCCcccccc--hHHH--HHHHhccCCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcC
Confidence 2222333445555555554443322111 1111 1211111 2223333333333333 477777777777777777
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
+.+.|..++.+|.+.|++.+.+-|..++-+ .++...++.+...|... |+.|+..|+.-.+..+...|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 777777777777777777777777666644 56666677777777666 777777777766666655443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=107.98 Aligned_cols=231 Identities=13% Similarity=0.091 Sum_probs=146.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
+.+.++|.+.|.+.+|...++...+. .|-+.||..|.+.|.+..++..|..++.+..+. .|.+..........+-
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 45667777777777777777766654 566667777777777777777777777776665 4555555566666666
Q ss_pred hcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHH
Q 012879 255 KCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNF 333 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 333 (454)
..++.++|.++|+...+..| ++.....+...|.-.|+++-|+.+++++.+.|+. ++..|+.+.-+|.-.++++-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 67777777777777666644 5556666666666677777777777777776655 556666666666666777777766
Q ss_pred HHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 012879 334 FDKMVEECEVLPD--IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 334 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (454)
|++.... --.|+ ..+|-.+....+..|++..|.+.|+-.... ......++.|...-.+.|+++.|..++..+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 6666543 22232 234444555555556666666666655544 2234555656555556666666666666665555
Q ss_pred cC
Q 012879 411 RG 412 (454)
Q Consensus 411 ~~ 412 (454)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 54
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-10 Score=106.16 Aligned_cols=399 Identities=11% Similarity=-0.012 Sum_probs=263.9
Q ss_pred hhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCC
Q 012879 27 LLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQ 106 (454)
Q Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 106 (454)
+.-|...|..+.-++...|+++.+.+.|++.. ..... ..+.|+.+...+...|.-..|..+++........
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~---~~~~~------~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ 389 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQAL---PFSFG------EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ 389 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh---Hhhhh------hHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence 35788999999999999999999999999987 44444 6688999999999999999999999877654423
Q ss_pred C-CchhHHHHHHHHH-hCCChhHHHHHHhhCCC--------CCchhHHHHHHHHHh-----------cCCHHHHHHHHhh
Q 012879 107 S-HVYVNTALVNMYV-SLGFLKDSSKLFDEMPE--------RNLVTWNVMITGLVK-----------WGELEFARSLFEE 165 (454)
Q Consensus 107 ~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~-----------~~~~~~A~~~~~~ 165 (454)
| |+..+-..-..|. +.+..++++.+-.++.. .....|..+.-+|.. .....++++.+++
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~ 469 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE 469 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence 4 3344433333343 44666666666555432 233344444444432 1224456666666
Q ss_pred CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch
Q 012879 166 MPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD 242 (454)
Q Consensus 166 ~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 242 (454)
..+ .|+...-.+.--|+..++.+.|.+..++..+. +...+...|..+.-.+...+++..|+.+.+..... .+.+
T Consensus 470 av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l-~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N 546 (799)
T KOG4162|consen 470 AVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALAL-NRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDN 546 (799)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhh
Confidence 543 34444444555677778888898888888886 55677788888888888888888888888776654 2212
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhc----------------------------CC-C-hhhHHHHHHHHHhcC--
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVE----------------------------RK-N-LVSWTSIISGFAMHG-- 290 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------------------------~~-~-~~~~~~l~~~~~~~g-- 290 (454)
......-++.-...++.+++......+... .| + +.++..+..-....+
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~ 626 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS 626 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence 222222222223344555444443333221 01 1 111111111111000
Q ss_pred -ChhHHHHHHHHHHhCCCC--CcH------HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 291 -MGKEAVENFGRMQKVGLK--PNR------VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 291 -~~~~A~~~~~~m~~~~~~--p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
..+.. |....+. |+. ..|......+.+.+..++|...+.+..+ ..+.....|......+...|
T Consensus 627 ~~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~ 698 (799)
T KOG4162|consen 627 AGSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKG 698 (799)
T ss_pred cccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHH
Confidence 00000 1111111 221 2344555677888999999988888875 33445667777778888999
Q ss_pred ChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHH--HHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 362 RLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGER--VTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
..++|.+.|.......| ++.+...+...+.+.|+..-|.. ++.++++.+|.++..|..++..+.+.|+.++|.+.|.
T Consensus 699 ~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 699 QLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred hhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 99999999999888855 46788999999999999888888 9999999999999999999999999999999999999
Q ss_pred HHhhccc
Q 012879 439 VMDERNA 445 (454)
Q Consensus 439 ~~~~~~~ 445 (454)
...+...
T Consensus 779 aa~qLe~ 785 (799)
T KOG4162|consen 779 AALQLEE 785 (799)
T ss_pred HHHhhcc
Confidence 8877654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=4.8e-12 Score=105.07 Aligned_cols=227 Identities=11% Similarity=-0.016 Sum_probs=198.4
Q ss_pred HhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh-hHHHHHHHHHhc
Q 012879 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV-SWTSIISGFAMH 289 (454)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~ 289 (454)
..+.++|.+.|.+..|++.++...++ .| .+.+|..|-..|.+..+...|+.+|.+-.+..|-.+ ...-+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHH
Confidence 46788999999999999999998886 34 778899999999999999999999999999878444 455677888889
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012879 290 GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
++.++|.++++...+.. +.+.....++...|.-.++++.|..+|+++.+. |+. ++..|..+.-+|.-.++++-++..
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 99999999999988863 346667777788888999999999999999998 764 678899999999999999999999
Q ss_pred HhcCCCC--CCc--HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 370 ALGIPSE--ITD--VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 370 ~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
|++.... .|+ ..+|..+.......||+..|.+.|+-++..++++...++.++..-.+.|++++|..++......
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9887765 344 4678889999999999999999999999999999999999999999999999999999876553
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-10 Score=99.86 Aligned_cols=393 Identities=12% Similarity=0.056 Sum_probs=217.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhH
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVN 112 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (454)
.|..++..| ..+.+.+.+++.+.+. ..-+. ...|.....-.+...|+.++|......-.... ..+...|
T Consensus 10 lF~~~lk~y-E~kQYkkgLK~~~~iL---~k~~e------HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCw 78 (700)
T KOG1156|consen 10 LFRRALKCY-ETKQYKKGLKLIKQIL---KKFPE------HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCW 78 (700)
T ss_pred HHHHHHHHH-HHHHHHhHHHHHHHHH---HhCCc------cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhH
Confidence 344444433 3455566666666655 32222 33444444444555566666666555444432 2344556
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcCC
Q 012879 113 TALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 113 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 186 (454)
+.+.-.+-...++++|++.|..... .|...|.-+.-.-++.|+++.....-....+ | ....|..++.++.-.|+
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 6555555555666666666665542 2334454444444555555555555444443 1 22345555555666666
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHH------HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChh
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLP------AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIF 260 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 260 (454)
...|..++++..+.....|+...+..... ...+.|..+.|.+.+...... .......-..-...+.+.++++
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHH
Confidence 66666666666554222344444332222 224445555555555544443 1112222334455556666666
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHH-HHHhcCC-----------------------------------hhHHHHHHHHHHh
Q 012879 261 SASKLFEDISVERKNLVSWTSIIS-GFAMHGM-----------------------------------GKEAVENFGRMQK 304 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~-----------------------------------~~~A~~~~~~m~~ 304 (454)
+|..++..+....||...|..... ++.+-.+ .+..-+++..+.+
T Consensus 237 eA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 237 EAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred hHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhh
Confidence 666666666665555444433322 2211111 1222333444445
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc-----C------------CCCChhHH--HHHHHHHHhcCChHH
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC-----E------------VLPDIKHY--GCLIDMLGRAGRLEQ 365 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~------------~~~~~~~~--~~l~~~~~~~g~~~~ 365 (454)
.|+++- +..+...|- ++...- +.++....+ | -+|+...| -.++..|-+.|+++.
T Consensus 317 Kg~p~v---f~dl~SLyk---~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~ 389 (700)
T KOG1156|consen 317 KGVPSV---FKDLRSLYK---DPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEV 389 (700)
T ss_pred cCCCch---hhhhHHHHh---chhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHH
Confidence 554432 233333332 111111 333222210 1 14554444 456788889999999
Q ss_pred HHHHHhcCCCCCCcH-hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 366 AEKTALGIPSEITDV-VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 366 A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
|..+++...+..|+. ..|..-.+.+...|++++|..+++++.+.+..|...-..-+.-..++.+.++|.+++..+.+.|
T Consensus 390 A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 390 ALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999999999986764 4566667888899999999999999999888777555577888899999999999999998877
Q ss_pred c
Q 012879 445 A 445 (454)
Q Consensus 445 ~ 445 (454)
.
T Consensus 470 ~ 470 (700)
T KOG1156|consen 470 F 470 (700)
T ss_pred c
Confidence 5
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-11 Score=102.80 Aligned_cols=198 Identities=12% Similarity=0.039 Sum_probs=92.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+...+...|++++|...+++..+. .+.+...+..+...+...|+++.|.+.+++..+. .|.+...+..+..
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~ 107 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHH
Confidence 34445555555555555555555555542 2223344444444445555555555555544443 2223344444444
Q ss_pred HHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 330 (454)
.+...|+ +++|.+.+++..+....| ....+..+..++...|++++|
T Consensus 108 ~~~~~g~---------------------------------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 108 FLCQQGK---------------------------------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHHccc---------------------------------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 4444444 444444444444321111 122333344444555555555
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
...++...+. .+.+...+..+...+...|++++|.+.+++.... ..+...+..+...+...|+.++|..+.+.+.+
T Consensus 155 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 155 EKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 5555555442 1122334444555555555555555555544333 22333444444555555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-10 Score=106.08 Aligned_cols=100 Identities=13% Similarity=0.011 Sum_probs=77.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC----CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHH
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE----ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLM 420 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 420 (454)
..|..|++-+......+.|..+.++.... ..|..-+..+.+.+.+.+....+..++.++.+.-... ......+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 56788888888999999999988887765 3455667788888999999999999999988733221 2234556
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhccccc
Q 012879 421 YNILAGVGRFGDAERLRRVMDERNAFK 447 (454)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (454)
.......|+.+...++.+-+...|+.-
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 677778899988888888888877654
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-11 Score=116.40 Aligned_cols=261 Identities=11% Similarity=-0.024 Sum_probs=186.8
Q ss_pred CchhHHHHHHHHHh-----cCCHHHHHHHHhhCCC--CC-cchHHHHHHHHH---------hcCChHHHHHHHHHHHHcc
Q 012879 139 NLVTWNVMITGLVK-----WGELEFARSLFEEMPC--RN-VVSWTGIIDGYT---------RMNRSNEALALFRKMVACE 201 (454)
Q Consensus 139 ~~~~~~~ll~~~~~-----~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~ 201 (454)
+...|...+.+... .+++++|..+|++..+ |+ ...|..+..++. ..+++++|...+++..+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l- 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL- 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc-
Confidence 34455566655322 2346789999998876 32 345555555443 234588999999999884
Q ss_pred CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-hhHH
Q 012879 202 YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-VSWT 280 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~ 280 (454)
.+.+...+..+...+...|++++|...++++.+. .|.++..+..+..++...|++++|...+++..+..|+. ..+.
T Consensus 334 -dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~ 410 (553)
T PRK12370 334 -DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGI 410 (553)
T ss_pred -CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHH
Confidence 4556778888888899999999999999999997 57688899999999999999999999999999987753 3344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHh
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGR 359 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 359 (454)
.++..+...|++++|+..++++.+...+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|..
T Consensus 411 ~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~---~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 411 TKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ---EITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc---cchhHHHHHHHHHHHhc
Confidence 455567778999999999999877532224445666778888999999999999987653 344 3444556667777
Q ss_pred cCChHHHHHHHhcCCCC---CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 360 AGRLEQAEKTALGIPSE---ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 360 ~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
.| ++|...++.+.+. .+....+ +-..+.-.|+.+.+... +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 77 4777766665554 2322223 33445556777777666 77766543
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-10 Score=99.86 Aligned_cols=281 Identities=12% Similarity=-0.029 Sum_probs=220.4
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHH
Q 012879 139 NLVTWNVMITGLVKWGELEFARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (454)
+......-..-+...+++.+..++++.+.+. +...+..-|.++...|+..+-..+=.++++ ..|....+|-.+.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~--~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVD--LYPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHH--hCCCCCcchhhHHH
Confidence 3344444555677889999999999988763 445666677789999999998888888888 56677889999999
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhH
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 294 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 294 (454)
.|...|+..+|.++|.+.... .|.-...|-.+.+.|.-.|..+.|...|....+.-| ....+--+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 998899999999999998875 454667899999999999999999999988877633 33334445556788899999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc-CC---CC-ChhHHHHHHHHHHhcCChHHHHHH
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC-EV---LP-DIKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
|.++|.+.... .+.|+..++-+.-.....+.+.+|..+|+.....- .. .+ -..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999987764 23466677777666667889999999999887320 01 11 234678889999999999999999
Q ss_pred HhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 370 ALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 370 ~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
+++.... +.+..++..+.-.|...|+++.|++.|.+++...|.+..+-..|..+.
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 9988776 558899999999999999999999999999999998865555555444
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-10 Score=100.29 Aligned_cols=234 Identities=8% Similarity=-0.096 Sum_probs=160.2
Q ss_pred cCChHHHHHHHHHHHHccCCCCC--hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 184 MNRSNEALALFRKMVACEYTEPS--EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
.++.+.++.-+.++.......|+ ...|..+...+...|+.+.|...|++..+. .|.++..|+.+...+...|++++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--RPDMADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHH
Confidence 34667777777777753222222 345777777888889999999888888886 56688899999999999999999
Q ss_pred HHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 262 ASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 262 a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
|...|++..+..| +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...++....
T Consensus 117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~- 193 (296)
T PRK11189 117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE- 193 (296)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh-
Confidence 9999999988767 46678888888888999999999999988753 3332222222234456789999999977654
Q ss_pred cCCCCChhHHHHHHHHHHhcCChHH--HHHHHhcCCCCC-----CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 341 CEVLPDIKHYGCLIDMLGRAGRLEQ--AEKTALGIPSEI-----TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 341 ~~~~~~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
...|+... ..+.. ...|+..+ +.+.+.+..... .....|..+...+.+.|++++|+..|+++++.+|.+
T Consensus 194 -~~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 194 -KLDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred -hCCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33333322 22332 33455433 333333322321 134578899999999999999999999999988753
Q ss_pred -CCcHHHHHHHHHh
Q 012879 414 -GGDYVLMYNILAG 426 (454)
Q Consensus 414 -~~~~~~l~~~~~~ 426 (454)
......++.....
T Consensus 270 ~~e~~~~~~e~~~~ 283 (296)
T PRK11189 270 FVEHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHHHH
Confidence 3333344444433
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-09 Score=91.70 Aligned_cols=277 Identities=10% Similarity=-0.026 Sum_probs=202.9
Q ss_pred CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHH---HHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHH
Q 012879 138 RNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTG---IIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVL 214 (454)
Q Consensus 138 ~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 214 (454)
.|+.....+...+...|+.++|+..|++...-|+.+... ..-.+...|+.+....+...+.. ...-....|..-+
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~--~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA--KVKYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh--hhhcchhhhhhhh
Confidence 345566777788888888888888888776544433322 23345567788877777777765 2334445555556
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChh
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGK 293 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 293 (454)
.......++..|..+-++.++. .|.+...+-.-...+...|+.++|.=.|+......| +...|..|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~--~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDS--EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhcc--CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 6667778888888888888776 455666776677788888999999999988888766 7889999999999999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHH-HHHh-cCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHH
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVL-NACS-HGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTA 370 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~ 370 (454)
+|.-+-+...+. .+.+..+.+.+. ..|. ...--++|.++++...+ +.|+ ....+.+...+...|+.++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 988877765543 233555555442 2222 23345788888887764 4565 445567778888899999999999
Q ss_pred hcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 371 LGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 371 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
++.....||....+.|.+.+...+.+.+|++.|..++..+|.+..+...+-.
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~ 513 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRL 513 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 9988888999999999999999999999999999999998887766554433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=7.4e-11 Score=108.04 Aligned_cols=234 Identities=16% Similarity=0.118 Sum_probs=138.4
Q ss_pred hhHHhHHHHHHccCchhHHHHHHHhhhhc-----CCCCchHH-HHHHHHHHHHhcCChhHHHHHHHHhhhc-----C---
Q 012879 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKR-----GFTAFDIR-VLNCLIDTYAKCGCIFSASKLFEDISVE-----R--- 273 (454)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--- 273 (454)
.+...+...|...|+++.|..+++...+. |...+... ..+.+...|...+++.+|..+|+++... +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44445555666666666666666555543 21122222 2334666777777777777777766554 1
Q ss_pred C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCC-CCcH-HHHHHHHHHHhcCCChHHHHHHHHHHHHhcC--C
Q 012879 274 K-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGL-KPNR-VTFLSVLNACSHGGLVEEGLNFFDKMVEECE--V 343 (454)
Q Consensus 274 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~ 343 (454)
| -..+++.|..+|.+.|++++|...+++..+ .|. .|.. ..++.+...|+..+++++|..+++...+... +
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 2 123556666667777777777666665432 111 1222 2345555666777777777777776555421 1
Q ss_pred CCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHh-
Q 012879 344 LPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE--------IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEM- 409 (454)
Q Consensus 344 ~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 409 (454)
.++ ..+++.|...|...|++++|.++++++... .+ ....++.+...|.+.+++++|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 121 356677777777777777777777766544 11 1345666777777777777777777766543
Q ss_pred ---hcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 410 ---ERGYG---GDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 410 ---~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
||.++ .+|..|+.+|.+.|++++|.++.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33332 245667777777777777777776665
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.8e-10 Score=98.99 Aligned_cols=126 Identities=10% Similarity=-0.046 Sum_probs=90.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCC-CCCchhHHHH
Q 012879 37 LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGF-QSHVYVNTAL 115 (454)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l 115 (454)
=++.+.+.|++++|....+++. ..++. +...+..=+-++.+.+++++|..+.+. .+. ..+...+---
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil---~~~pd------d~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~fEK 85 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKIL---SIVPD------DEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFFFEK 85 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHH---hcCCC------cHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhhHHH
Confidence 3456778899999999999998 66655 777888888888999999999855432 221 1111111122
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchH
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSW 174 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~ 174 (454)
+-++.+.+..|+|+..++...+.+..+...-...+.+.|++++|.++|+.+.+.+...+
T Consensus 86 AYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 86 AYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred HHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 33445889999999999966666666777777888999999999999999865433333
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-09 Score=99.89 Aligned_cols=291 Identities=10% Similarity=0.003 Sum_probs=185.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHH
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVN 117 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 117 (454)
...+...|++++|++.++.-. ..-+. ....+......+.+.|+.++|..++..+++.+ |.|..-|..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~---~~I~D------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNE---KQILD------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhh---hhCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHH
Confidence 445678899999999998875 33322 45667788889999999999999999999987 455556666666
Q ss_pred HHHhC-----CChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHH-HHHHHHhhCCCCCc-chHHHHHHHHHhcCChH
Q 012879 118 MYVSL-----GFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELE-FARSLFEEMPCRNV-VSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 118 ~~~~~-----g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~-~A~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 188 (454)
+..-. .+.+....+++++.+ |...+...+.-.+.....+. .+..++..+....+ .+|+.+-..|.......
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAA 160 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHH
Confidence 66333 256777777877754 32222222211122212222 23333344444433 45555555555444444
Q ss_pred HHHHHHHHHHHcc-------------CCCCCh--hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 189 EALALFRKMVACE-------------YTEPSE--ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 189 ~a~~~~~~~~~~~-------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
-..+++....... .-+|+. .++..+...|...|++++|.++.+..++. .|..+..|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 4555555544320 113333 34556667777888888888888888876 565677888888888
Q ss_pred HhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH--------HHHHHHHHHhcC
Q 012879 254 AKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV--------TFLSVLNACSHG 324 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--------~~~~l~~~~~~~ 324 (454)
-..|++.+|.+.++......+ |-..-+-.+..+.++|++++|.+++......+..|-.. -......+|.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888877644 44455556677788888888888887776655433221 113344667778
Q ss_pred CChHHHHHHHHHHHHh
Q 012879 325 GLVEEGLNFFDKMVEE 340 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~ 340 (454)
|++..|++.|..+.+.
T Consensus 319 ~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 319 GDYGLALKRFHAVLKH 334 (517)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 8887777766665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=8e-10 Score=93.13 Aligned_cols=185 Identities=8% Similarity=0.040 Sum_probs=108.3
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHH
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVN 117 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 117 (454)
++-+..+.++..|+.+++.-. ..+.. - ...+-..+..++-+.|++++|...+..+.+.. .++...+..|..
T Consensus 29 Ledfls~rDytGAislLefk~---~~~~E--E---E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAc 99 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKL---NLDRE--E---EDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLAC 99 (557)
T ss_pred HHHHHhcccchhHHHHHHHhh---ccchh--h---hHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHH
Confidence 667778899999999999876 44433 1 22333345566779999999999999988865 677788888888
Q ss_pred HHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 012879 118 MYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
++.-.|.+.+|..+-....+ ++..-..++....+.++-++-..+.+.+.... .--.++.+.....-.+++|+++|.+.
T Consensus 100 c~FyLg~Y~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 100 CKFYLGQYIEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88889999999998877643 22223334444445555444444444433211 11222333333333455555555555
Q ss_pred HHccCCCCChhhHHhHHH-HHHccCchhHHHHHHHhhhhc
Q 012879 198 VACEYTEPSEITILAVLP-AIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~ 236 (454)
... .|.-...+.-+. +|.+..-++.+.++++...+.
T Consensus 178 L~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q 214 (557)
T KOG3785|consen 178 LQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ 214 (557)
T ss_pred Hhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh
Confidence 432 233333333222 334444445555555444443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-10 Score=106.65 Aligned_cols=238 Identities=14% Similarity=0.086 Sum_probs=185.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHc-----cCCCCChhhHH-hHHHHHHccCchhHHHHHHHhhhhc-----CC-C
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVAC-----EYTEPSEITIL-AVLPAIWQNGDVKSCQLIHGYGEKR-----GF-T 239 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 239 (454)
.+...+...|...|++++|..++++..+. |...|...+.. .+...|...+++++|..+|+++... |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45666899999999999999999998763 11345554444 4777889999999999999998763 21 2
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc--------CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhC---CC
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--------RKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKV---GL 307 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~ 307 (454)
|.-..+++.|..+|.+.|++++|...+++..+. .|.+. .++.++..+...+++++|..++++..+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 223457788889999999999999999887665 12332 4667778899999999999999986542 12
Q ss_pred CCc----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhc----C-CCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-
Q 012879 308 KPN----RVTFLSVLNACSHGGLVEEGLNFFDKMVEEC----E-VLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE- 376 (454)
Q Consensus 308 ~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 376 (454)
.++ ..+++.+...|...|++++|.++++.+.... + ..+ ....++.|...|.+.+++.+|.++|.+....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 333 3578999999999999999999999988752 1 112 2456788899999999999999998876544
Q ss_pred ------CCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 377 ------ITD-VVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 377 ------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.|+ ..+|..|...|...|++++|+++.+.+...
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 344 368999999999999999999999998754
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=9.5e-09 Score=93.38 Aligned_cols=248 Identities=13% Similarity=0.215 Sum_probs=141.3
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHH----hcCCCCCCCCCCChhhHHHHHH
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQI----YTHSHSPLPPLFDSFTYSFLIR 82 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~l~~ 82 (454)
+.+-|+.+.++++.-++-.| ..-+-.|..+++.+++++|-+.+..+... ...|.+ +...|+-+..
T Consensus 150 ~~~lPets~rvyrRYLk~~P-----~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkS------n~qlw~elcd 218 (835)
T KOG2047|consen 150 SHGLPETSIRVYRRYLKVAP-----EAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKS------NHQLWLELCD 218 (835)
T ss_pred hCCChHHHHHHHHHHHhcCH-----HHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccc------hhhHHHHHHH
Confidence 34555677777777766665 44667788899999999999999887631 122322 5566777777
Q ss_pred HHhccCCcchHhHHHHHHHHcCC--CCCc--hhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhc---
Q 012879 83 TCATLSHPNLGTQLHAVISKVGF--QSHV--YVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKW--- 153 (454)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~--- 153 (454)
..+++.+.-....+=.-+ +.|+ -+|. ..|++|.+.|.+.|.+++|..+|++... .++..|..+.++|+.-
T Consensus 219 lis~~p~~~~slnvdaii-R~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~ 297 (835)
T KOG2047|consen 219 LISQNPDKVQSLNVDAII-RGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEES 297 (835)
T ss_pred HHHhCcchhcccCHHHHH-HhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHH
Confidence 766665444433332222 2232 2443 4789999999999999999999988764 2333444444444311
Q ss_pred -------------C------CHHHHHHHHhhCCCC---------------CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012879 154 -------------G------ELEFARSLFEEMPCR---------------NVVSWTGIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 154 -------------~------~~~~A~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
| +++-...-|+.+... ++..|..- .-+..|+..+-...|.+..+
T Consensus 298 ~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~ 375 (835)
T KOG2047|consen 298 CVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVK 375 (835)
T ss_pred HHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHH
Confidence 1 122333333333211 11222221 12224555666666666655
Q ss_pred ccCCCCC------hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch--HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 200 CEYTEPS------EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD--IRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 200 ~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
.+.|. ...|..+.+.|-..|+++.|..+|++..+......+ ..+|..-...-.+..+++.|+++.++..
T Consensus 376 --~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~ 452 (835)
T KOG2047|consen 376 --TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRAT 452 (835)
T ss_pred --ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhh
Confidence 22222 134556666666666666666666666665432211 3455555566666666666666665543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=79.94 Aligned_cols=50 Identities=30% Similarity=0.573 Sum_probs=43.5
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 012879 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 323 (454)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78888888888888888888888888888888888888888888888874
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.2e-08 Score=92.81 Aligned_cols=363 Identities=13% Similarity=0.063 Sum_probs=247.5
Q ss_pred hhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHH
Q 012879 75 FTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLV 151 (454)
Q Consensus 75 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~ 151 (454)
..|..++.+| ..+++...++..+.+.+ +.+-...+.....-.+...|+.++|....+.-.. .+.++|..+.-.+-
T Consensus 9 ~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 9 ALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence 3445555544 55677788888888777 3344555655555566778999999999888776 35578888888888
Q ss_pred hcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHH
Q 012879 152 KWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQL 228 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 228 (454)
...++++|++.|..... .|...+.-+.-.-...++++.......+..+ -.+.....|..+..+..-.|+...|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLq--l~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQ--LRPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999987653 4566777777777888999999988888887 344556778888899999999999999
Q ss_pred HHHhhhhcCCCCchHHHHHHH------HHHHHhcCChhHHHHHHHHhhhcCCChhhH-HHHHHHHHhcCChhHHHHHHHH
Q 012879 229 IHGYGEKRGFTAFDIRVLNCL------IDTYAKCGCIFSASKLFEDISVERKNLVSW-TSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~l------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
+.+...+....+++...+.-. .....+.|.++.|.+.+......-.|-..+ .+-...+.+.+++++|..++..
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 999998876444466555432 234567888899988887766543344433 3455678899999999999999
Q ss_pred HHhCCCCCcHHHHHHHH-HHHhcCCChHHHH-HHHHHHHHhc---------------------------------CCCCC
Q 012879 302 MQKVGLKPNRVTFLSVL-NACSHGGLVEEGL-NFFDKMVEEC---------------------------------EVLPD 346 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~-~~~~~~~~~~---------------------------------~~~~~ 346 (454)
++.. .||..-|...+ .++.+-.+.-++. .+|....+.+ |+++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~- 321 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS- 321 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc-
Confidence 9987 46666555444 3443222222222 3343333220 3322
Q ss_pred hhHHHHHHHHHHhcCChH----HHHHHHhcCCCC------------CCcHhH--HHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLE----QAEKTALGIPSE------------ITDVVV--WRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~----~A~~~~~~~~~~------------~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
++..+...|-.-...+ -+..+...+... .|.... +..++..+-..|+++.|...++.++.
T Consensus 322 --vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 322 --VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred --hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 2222222222111111 111222222111 344444 45577888899999999999999998
Q ss_pred hhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 409 MERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
.-|.-+..|..-++++.+.|..++|...+++.++.+..
T Consensus 400 HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a 437 (700)
T KOG1156|consen 400 HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA 437 (700)
T ss_pred cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch
Confidence 88877778888889999999999999999998876543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-09 Score=101.14 Aligned_cols=261 Identities=11% Similarity=0.010 Sum_probs=176.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc-
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC- 256 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 256 (454)
...+...|++++|++.++.-.+ .+......+......+.+.|+.++|..++..+.+. .|.+...|..+..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhc
Confidence 3455666777777777766544 23333444555566667777777777777777776 354556666666665322
Q ss_pred ----CChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHH
Q 012879 257 ----GCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMG-KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGL 331 (454)
Q Consensus 257 ----g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~ 331 (454)
.+.+...++|+++....|.......+.-.+.....+ ..+..++..+...|+++ +|+.+-..|....+.+-..
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence 246667777777776655444443333333322233 24555666777788664 4555555666555555555
Q ss_pred HHHHHHHHhc-------------CCCCChh--HHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 332 NFFDKMVEEC-------------EVLPDIK--HYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 332 ~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
+++....... .-+|+.. ++.-+...|-..|++++|++++++.++..|+ +..|..-.+.+-+.|+
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCC
Confidence 6666554331 1123432 3455677888999999999999998888665 5678888888999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
+++|.+.++.+.++++.|...-...+..+.++|++++|.+++..+...+.
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 99999999999999998888888889999999999999999999877765
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-09 Score=85.28 Aligned_cols=390 Identities=13% Similarity=0.052 Sum_probs=255.4
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhH
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVN 112 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (454)
-+++.+..+.+..+++.|++++..-. +..++ +....+.|..+|-...++..|-..++++... .|...-|
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~---Er~p~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qY 80 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSEL---ERSPR------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQY 80 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHH---hcCcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHH
Confidence 35677777889999999999998887 66666 7888999999999999999999999998764 3444433
Q ss_pred HH-HHHHHHhCCChhHHHHHHhhCCCC-CchhHHHHHH--HHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcCCh
Q 012879 113 TA-LVNMYVSLGFLKDSSKLFDEMPER-NLVTWNVMIT--GLVKWGELEFARSLFEEMPC-RNVVSWTGIIDGYTRMNRS 187 (454)
Q Consensus 113 ~~-l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ll~--~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 187 (454)
.. -...+-+.+.+.+|+++...|... +...-..-+. ..-..+++..+..++++... .+..+.+.......+.|++
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccH
Confidence 32 234556788999999999988763 2222222222 23467899999999999984 6667777777778899999
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC------------ch------H------
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA------------FD------I------ 243 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~------~------ 243 (454)
+.|.+-|....+-+|..|- ..|+..+ +..+.|+.+.|.+...+++++|+.. +| +
T Consensus 161 EaAvqkFqaAlqvsGyqpl-lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~S 238 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPL-LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQS 238 (459)
T ss_pred HHHHHHHHHHHhhcCCCch-hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHH
Confidence 9999999999998777664 4555544 4457789999999999999887432 01 1
Q ss_pred ---HHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 244 ---RVLNCLIDTYAKCGCIFSASKLFEDISVE---RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 244 ---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
..+|.-...+.+.|+++.|.+.+-+|... ..|++|...+.-.= ..+++.+..+-+.-+.+.++ ....||..+
T Consensus 239 al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANl 316 (459)
T KOG4340|consen 239 ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANL 316 (459)
T ss_pred HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHH
Confidence 12233334456789999999999998765 34777776654322 23456666666666666644 346789889
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCC-CCChhHHHHHHHHHHh-cCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEV-LPDIKHYGCLIDMLGR-AGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g 394 (454)
+-.||+..-++.|-.++.+-... .+ -.+...|+ |++++.. .-.+++|.+-++.+... ........+-++--...+
T Consensus 317 LllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~ 394 (459)
T KOG4340|consen 317 LLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNR 394 (459)
T ss_pred HHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998888888776653322 11 11233333 3444443 34667776655554332 000111111111111111
Q ss_pred C---hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 395 N---VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 395 ~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+ ...|++-+++.+++ ..++....++.+.+..++..+.++|+.=.+
T Consensus 395 dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve 442 (459)
T KOG4340|consen 395 DDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE 442 (459)
T ss_pred cHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence 1 12233333333332 234555667778888999999998876554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.30 E-value=7.8e-10 Score=87.86 Aligned_cols=196 Identities=14% Similarity=0.017 Sum_probs=109.4
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH 323 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 323 (454)
+...|.-.|...|++..|..-+++..+..| +..+|..+...|.+.|+.+.|.+-|++..+... -+..+.|....-+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHh
Confidence 344455556666666666666666666555 334555566666666666666666666555421 133444555555556
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHH
Q 012879 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
.|++++|...|++....+....-..+|..+.-+..+.|+.+.|.+.|++.....| .+.+.-.+.....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 6666666666666665533333344555565556666666666666666555522 334555555566666666666666
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 403 TRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
+++....++.........+++-.+.|+.+.+.+.-.++.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 666655555444444445555555666655555544443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-10 Score=97.59 Aligned_cols=217 Identities=12% Similarity=0.007 Sum_probs=159.2
Q ss_pred CchhHHHHHHHhhhhcCC-CC-chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHH
Q 012879 221 GDVKSCQLIHGYGEKRGF-TA-FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVE 297 (454)
Q Consensus 221 ~~~~~a~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 297 (454)
+..+.+..-+.++....- .| .....|..+...|...|+.++|...|++..+..| +...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 456667777777765321 22 1356788889999999999999999999998877 67899999999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-
Q 012879 298 NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE- 376 (454)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 376 (454)
.|++..+.... +..++..+..++...|++++|.+.++...+. .|+..........+...+++++|.+.+++....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 99999886322 4567778888888999999999999999875 344322222223345678899999999765443
Q ss_pred CCcHhHHHHHHHHHHcCCChhHHHHHHHHHH-------HhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 377 ITDVVVWRTLLGACSFHGNVEMGERVTRKIL-------EMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 377 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.|+...+ .......|+...+ +.+..+. +..|.....|..++..+.+.|++++|...|++....++
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 2332222 2233345665544 3444444 44555667899999999999999999999999988765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.4e-08 Score=81.57 Aligned_cols=244 Identities=9% Similarity=-0.020 Sum_probs=142.8
Q ss_pred CCchhHHHHHHHHhhhhhhhhhhhHHH-HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC
Q 012879 10 PNNITTQIHSHLLTTNSLLHHSQLFNT-LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~ 88 (454)
|..-+..+.++-...+. ......+. +...+..-|++++|+.+|..+. .... | +...+..|.-+.--.|
T Consensus 37 DytGAislLefk~~~~~--EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~---~~~~---~---~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDR--EEEDSLQLWIAHCYFHLGDYEEALNVYTFLM---NKDD---A---PAELGVNLACCKFYLG 105 (557)
T ss_pred cchhHHHHHHHhhccch--hhhHHHHHHHHHHHHhhccHHHHHHHHHHHh---ccCC---C---CcccchhHHHHHHHHH
Confidence 34444455544443333 12222222 3346678899999999999997 4332 3 5566666666666778
Q ss_pred CcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012879 89 HPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC 168 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 168 (454)
.+.+|..+-... +.++..-..++....+.|+-++-..+-+.+.. ....--++.+..--.-.+++|++++.++..
T Consensus 106 ~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 106 QYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-TLEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred HHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 888888775433 33444445566666678887776666555543 223334455555555678999999999886
Q ss_pred --CCcchHHH-HHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhh------------
Q 012879 169 --RNVVSWTG-IIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYG------------ 233 (454)
Q Consensus 169 --~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------------ 233 (454)
|+-...|. +.-+|.+..-++-+.+++.-..+ .++.++...+..+....+.=.-..|+.-.+.+
T Consensus 180 dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~--q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~ 257 (557)
T KOG3785|consen 180 DNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR--QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIE 257 (557)
T ss_pred cChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH--hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHH
Confidence 34344444 44577888888888888888877 34444444444443333321111111111111
Q ss_pred --hhcC------------CCCc----hHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 234 --EKRG------------FTAF----DIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 234 --~~~~------------~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+.+ +.|+ -+.....|+-.|.+.+++++|..+.+++...
T Consensus 258 ~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt 314 (557)
T KOG3785|consen 258 YLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT 314 (557)
T ss_pred HHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC
Confidence 1111 0110 1234455666788999999999998887653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.4e-12 Score=76.72 Aligned_cols=50 Identities=30% Similarity=0.485 Sum_probs=48.4
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
||+.+||.+|++|++.|++++|.++|++|. +.|+. | |..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~---~~g~~--P---~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMK---KRGIK--P---DSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHH---HcCCC--C---CHHHHHHHHHHHcC
Confidence 899999999999999999999999999999 99999 9 99999999999874
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-09 Score=84.63 Aligned_cols=191 Identities=11% Similarity=0.007 Sum_probs=108.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc
Q 012879 146 MITGLVKWGELEFARSLFEEMPCRN---VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD 222 (454)
Q Consensus 146 ll~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (454)
+.-+|...|+...|..-+++..+.| ..+|..+...|.+.|+.+.|.+.|++..+ -.+-+..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHhCCC
Confidence 3444555555555555555554322 23455555556666666666666666555 223344555555555566666
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
+++|...|++.......+....++..+.-+..+.|+.+.|...|++..+..| ...+.-.+.....+.|++-.|...++.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 6666666666555544444455666666666666666666666666666544 334555566666666666666666666
Q ss_pred HHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
....+. ++..+....|+.--..|+.+.+.++=..+.+
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 655543 5555555555555566666666555555554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.1e-08 Score=88.18 Aligned_cols=260 Identities=11% Similarity=0.003 Sum_probs=165.5
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHH
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITG 149 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~ 149 (454)
++.....+..++...|+.++|...|++....+ +-++.......-.+.+.|+.+....+...+... ...-|-.-...
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 66777777777778888888888777766543 223333333444455667777766666555432 23334444444
Q ss_pred HHhcCCHHHHHHHHhhCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 150 LVKWGELEFARSLFEEMPCR---NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
.-..++++.|+.+-++..+. ++..|-.-...+...+++++|.-.|+..+. --|-+...|..++.+|...|++.+|
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHH
Confidence 55667777777777766543 334444444566777777777777777765 2345567777788888777777777
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHH-HH-HHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 012879 227 QLIHGYGEKRGFTAFDIRVLNCLI-DT-YAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAVENFGRMQ 303 (454)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~-~~-~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 303 (454)
...-+...+. .+.+..+.+.+. .. +....--++|.+++++.....|+ ...-+.+...+...|..+.++.++++..
T Consensus 388 ~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L 465 (564)
T KOG1174|consen 388 NALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHL 465 (564)
T ss_pred HHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHH
Confidence 7666666554 343555555442 22 22233456777777777766664 3455666677777777777777777766
Q ss_pred hCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 304 KVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 304 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
.. .||....+.|.+.+...+.+++|.+.|.....
T Consensus 466 ~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 466 II--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred hh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 53 56777777777777777777777777777764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.8e-09 Score=87.28 Aligned_cols=301 Identities=14% Similarity=0.065 Sum_probs=211.1
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHH---HHHHhcCCHHHHHHHHhhCCCCCcchHHH---HHHHH
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMI---TGLVKWGELEFARSLFEEMPCRNVVSWTG---IIDGY 181 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~ 181 (454)
++.-..-+...+...|++..|+.-|....+.|+..|.++. ..|...|+...|+.-+.+..+-.+..+.+ -...+
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhh
Confidence 3344445666777778888888888888877776666554 45777777777777777766533322322 23467
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChh----------------hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHH
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEI----------------TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRV 245 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 245 (454)
.++|+++.|..-|+..+++ .|+.. .....+..+...||...|++....+.+. .|.+...
T Consensus 117 lK~Gele~A~~DF~~vl~~---~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--~~Wda~l 191 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQH---EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--QPWDASL 191 (504)
T ss_pred hhcccHHHHHHHHHHHHhc---CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--CcchhHH
Confidence 7888888888888888765 22211 1334455666778889999999988886 5678888
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcC-CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH----HHH---H
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVER-KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT----FLS---V 317 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~---l 317 (454)
+..-..+|...|.+..|+.-++...+.. .++..+--+-..+...|+.+.++...++-++. .||... |.. +
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 8888999999999999988777776653 46667777778888889988888888887764 455432 111 1
Q ss_pred H------HHHhcCCChHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHH
Q 012879 318 L------NACSHGGLVEEGLNFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRT 385 (454)
Q Consensus 318 ~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~ 385 (454)
. ......+++.++.+-.+...+. .|. ...+..+-.++...|++.+|++...++.+..|+ +.++..
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~d 346 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCD 346 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHH
Confidence 1 1223556777777777776654 333 223455667777888999999988888887454 778888
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
-..+|.-...++.|+.-|+++.+.++.+..+-.
T Consensus 347 RAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re 379 (504)
T KOG0624|consen 347 RAEAYLGDEMYDDAIHDYEKALELNESNTRARE 379 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 888998888999999999999988887765433
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.5e-08 Score=86.03 Aligned_cols=369 Identities=12% Similarity=0.059 Sum_probs=215.5
Q ss_pred HHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC-chhHHHHHH
Q 012879 39 HFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH-VYVNTALVN 117 (454)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~ 117 (454)
.+.+..|+++.|+.+|.+.. ...+. +...|+.-..+++..|++++|.+--.+.++.. |+ +.-|.-...
T Consensus 10 naa~s~~d~~~ai~~~t~ai---~l~p~------nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Ga 78 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAI---MLSPT------NHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGA 78 (539)
T ss_pred HhhcccccHHHHHHHHHHHH---ccCCC------ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHH
Confidence 46678999999999999988 54443 88889999999999999999988777776654 44 457888888
Q ss_pred HHHhCCChhHHHHHHhhCCC--C-CchhHHHHHHHHHhcCCHHHHHHHHh------hCCC-C------CcchHHHHHHHH
Q 012879 118 MYVSLGFLKDSSKLFDEMPE--R-NLVTWNVMITGLVKWGELEFARSLFE------EMPC-R------NVVSWTGIIDGY 181 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~A~~~~~------~~~~-~------~~~~~~~l~~~~ 181 (454)
++.-.|++++|+..|.+-.+ | +...++.+..++... . .+.+.|. .+.. | ....|..++..+
T Consensus 79 a~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~ 155 (539)
T KOG0548|consen 79 ALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEII 155 (539)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence 99999999999999998775 2 233444444444110 0 0011110 0000 0 001122221111
Q ss_pred Hhc----------CChHHHHHHHHHH-----HHc------cCCCC----------------------ChhhHHhHHHHHH
Q 012879 182 TRM----------NRSNEALALFRKM-----VAC------EYTEP----------------------SEITILAVLPAIW 218 (454)
Q Consensus 182 ~~~----------~~~~~a~~~~~~~-----~~~------~~~~~----------------------~~~~~~~l~~~~~ 218 (454)
-+. .+...|...+... ... .+..| -..-...+.++..
T Consensus 156 ~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaay 235 (539)
T KOG0548|consen 156 QKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAY 235 (539)
T ss_pred hcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHH
Confidence 100 0011111111000 000 00001 0112556666666
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh-hHHH-------HHHHHHhcC
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV-SWTS-------IISGFAMHG 290 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~-------l~~~~~~~g 290 (454)
+..+++.+.+.+....+.. .+...++....+|...|.+..+...-+...+.+.... -|+. +..+|.+.+
T Consensus 236 kkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~ 312 (539)
T KOG0548|consen 236 KKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKRE 312 (539)
T ss_pred HhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 6667777777776666653 2555566666666666666666665555444322111 1222 223444556
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHH-------------------------HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVT-------------------------FLSVLNACSHGGLVEEGLNFFDKMVEECEVLP 345 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~-------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 345 (454)
+++.++..|.+.......|+..+ ...-...+.+.|++..|+..|.++++. -+.
T Consensus 313 ~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~ 390 (539)
T KOG0548|consen 313 DYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPE 390 (539)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCc
Confidence 66666666666554333333221 111133456678888888888888774 245
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
|...|..-.-+|.+.|.+..|+.-.+...+..| ....|..-..++....++++|.+.|.+.++.+|.+......+.++.
T Consensus 391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCV 470 (539)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 677788888888888888888877777666633 3455655566666667888888888888888777666555555555
Q ss_pred Hh
Q 012879 425 AG 426 (454)
Q Consensus 425 ~~ 426 (454)
..
T Consensus 471 ~a 472 (539)
T KOG0548|consen 471 EA 472 (539)
T ss_pred HH
Confidence 54
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.3e-08 Score=88.99 Aligned_cols=261 Identities=11% Similarity=-0.046 Sum_probs=145.1
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCCChhhHHh---HHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 180 GYTRMNRSNEALALFRKMVACEYTEPSEITILA---VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
.+...|++++|.+.+++..+. .|.+...+.. ........+..+.+.+.+... .+..|........+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 455667777777777777663 2333333332 111112234444444444441 112333445555666777778
Q ss_pred CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCcH--HHHHHHHHHHhcCCChHHHHH
Q 012879 257 GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL-KPNR--VTFLSVLNACSHGGLVEEGLN 332 (454)
Q Consensus 257 g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~~~~~~a~~ 332 (454)
|++++|.+.+++..+..| +...+..+...+...|++++|...+++...... .|+. ..|..+...+...|++++|..
T Consensus 128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~ 207 (355)
T cd05804 128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA 207 (355)
T ss_pred CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888777655 455666777777788888888888877665422 1222 234456667777888888888
Q ss_pred HHHHHHHhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH---HhcCC---CCCCcHhHHHHHHHHHHcCCChhHHHHHH
Q 012879 333 FFDKMVEECEVLPDIKHY-G--CLIDMLGRAGRLEQAEKT---ALGIP---SEITDVVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
+++.........+..... + .++.-+...|....+.++ ..... ..............++...|+.+.|..++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 888775321111111111 1 222333333432222222 11111 10011122234566777888888888888
Q ss_pred HHHHHhhcC---------CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 404 RKILEMERG---------YGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 404 ~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+.+...... ........+.++.+.|++++|.+.+.......
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 887653322 22334455666778899999988888776643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.6e-07 Score=85.62 Aligned_cols=397 Identities=9% Similarity=0.049 Sum_probs=247.7
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.=+..|-..+..+.++|+.-.....|+...+ ...+. - ....|...+.-....+-++-+.++++.-++..
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALr--aLpvt--q---H~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~---- 168 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALR--ALPVT--Q---HDRIWDLYLKFVESHGLPETSIRVYRRYLKVA---- 168 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHH--hCchH--h---hccchHHHHHHHHhCCChHHHHHHHHHHHhcC----
Confidence 3346788888888899999999999998873 22222 2 55678888888888888999999998887643
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCC----------CchhHHHHHHHHHhcCC---HHHHHHHHhhCCC--CC--c
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPER----------NLVTWNVMITGLVKWGE---LEFARSLFEEMPC--RN--V 171 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----------~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~--~~--~ 171 (454)
+..-+-.+..+++.+++++|.+.+..+... +...|..+.....+.-+ --....+++.+.. +| .
T Consensus 169 P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g 248 (835)
T KOG2047|consen 169 PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLG 248 (835)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHH
Confidence 334677888889999999999999988742 33456665555554433 2234455555554 33 3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc----------------------hhHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD----------------------VKSCQLI 229 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~ 229 (454)
..|++|...|.+.|.+++|.++|++..+. ..+..-|..+.++|+.-.. ++-...-
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 57899999999999999999999998764 2344445555555543211 1111222
Q ss_pred HHhhhhcCC----------CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CC------ChhhHHHHHHHHHhcCCh
Q 012879 230 HGYGEKRGF----------TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RK------NLVSWTSIISGFAMHGMG 292 (454)
Q Consensus 230 ~~~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~------~~~~~~~l~~~~~~~g~~ 292 (454)
|+.+..... .|.+...|..-+. +..|+..+-...|.++... .| -...|..+...|-..|+.
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 222222210 1112222222222 2246666777777776654 22 223577778888888999
Q ss_pred hHHHHHHHHHHhCCCCCc---HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-----------------ChhHHHH
Q 012879 293 KEAVENFGRMQKVGLKPN---RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-----------------DIKHYGC 352 (454)
Q Consensus 293 ~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------------~~~~~~~ 352 (454)
+.|..+|++..+...+-- ..+|..-...=.+..+++.|.++.+..... .-.| +...|..
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~ 482 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSM 482 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHH
Confidence 999999988877533211 234444444445667788888888887654 1111 2234555
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC--CCcHHHHHHHHHh---
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY--GGDYVLMYNILAG--- 426 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~--- 426 (454)
+++.--..|-++....+++++.+. ..++...-.....+-.+.-++++.+++++-+.+-+-+ ...|+..+.-+.+
T Consensus 483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg 562 (835)
T KOG2047|consen 483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG 562 (835)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence 556566677888888888888776 2222222222233345566788888888776654332 2345544443332
Q ss_pred cCCcCcHHHHHHHHhh
Q 012879 427 VGRFGDAERLRRVMDE 442 (454)
Q Consensus 427 ~g~~~~a~~~~~~~~~ 442 (454)
.-+.+.|..+|++..+
T Consensus 563 g~klEraRdLFEqaL~ 578 (835)
T KOG2047|consen 563 GTKLERARDLFEQALD 578 (835)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 3467889999999887
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-09 Score=98.25 Aligned_cols=221 Identities=13% Similarity=0.092 Sum_probs=181.1
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhH
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 294 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 294 (454)
-+.+.|++..|.-.|+..++. .|.+...|..|.......++-..|+..+.+..+..| |......|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHH
Confidence 346788899999999998887 677889999999999999999999999999998877 67788888889999999999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHH-----------HHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVL-----------NACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
|+..++.-+...++ |..+. ..+.....+....++|-++....+..+|+.+...|.-.|--.|.+
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999887664311 10011 112222334556666766666556667888888888889999999
Q ss_pred HHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 364 EQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
++|...|+.+....| |...||.|.-.++...+.++|+..+.+++++.|....+...|+-.|...|.+++|.+.|-....
T Consensus 447 draiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 447 DRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999988845 6789999999999999999999999999999999999999999999999999999998866554
Q ss_pred c
Q 012879 443 R 443 (454)
Q Consensus 443 ~ 443 (454)
.
T Consensus 527 m 527 (579)
T KOG1125|consen 527 M 527 (579)
T ss_pred h
Confidence 3
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-09 Score=91.97 Aligned_cols=250 Identities=12% Similarity=0.018 Sum_probs=152.4
Q ss_pred HHhcCCHHHHHHHHhhCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH
Q 012879 150 LVKWGELEFARSLFEEMPCR----NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS 225 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (454)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .++.. +.+|.......+...+...++-+.
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~--~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK--SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T--TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc--CCChhHHHHHHHHHHHhCccchHH
Confidence 334566666664443 2111 2234445667777777766543 33333 235666666555555544445555
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
+..-++.....+..+.++.........+...|++++|++++++. .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG----GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555444433323224444444455666778888888877654 45666677778888888888888888888764
Q ss_pred CCCCcHHHHHHHHHHHh----cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcH
Q 012879 306 GLKPNRVTFLSVLNACS----HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDV 380 (454)
Q Consensus 306 ~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 380 (454)
. .| .+...+..++. -.+.+.+|..+|+++.. .+.+++.+.+.+.-++...|++++|.+++.+.... +-++
T Consensus 161 ~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~ 235 (290)
T PF04733_consen 161 D--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP 235 (290)
T ss_dssp S--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH
T ss_pred C--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH
Confidence 2 23 33444444433 23468888888888765 45677788888888888888888888888887766 3456
Q ss_pred hHHHHHHHHHHcCCCh-hHHHHHHHHHHHhhcCCC
Q 012879 381 VVWRTLLGACSFHGNV-EMGERVTRKILEMERGYG 414 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~ 414 (454)
.+...++.+....|+. +.+.+.+.++....|.++
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 6676777777777777 667778888777766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-07 Score=82.73 Aligned_cols=398 Identities=11% Similarity=0.073 Sum_probs=205.6
Q ss_pred chhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHH--hccCC
Q 012879 12 NITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTC--ATLSH 89 (454)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~--~~~~~ 89 (454)
+.+.+.-..++...+ .|+..+..-+-++.+.+++++|+.+.+.-. ..... +... +=.+| -+.+.
T Consensus 29 e~a~k~~~Kil~~~p--dd~~a~~cKvValIq~~ky~~ALk~ikk~~---~~~~~------~~~~---fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 29 EEAVKTANKILSIVP--DDEDAIRCKVVALIQLDKYEDALKLIKKNG---ALLVI------NSFF---FEKAYCEYRLNK 94 (652)
T ss_pred HHHHHHHHHHHhcCC--CcHhhHhhhHhhhhhhhHHHHHHHHHHhcc---hhhhc------chhh---HHHHHHHHHccc
Confidence 344444444555444 667777777778889999999986554432 10100 1111 23333 36777
Q ss_pred cchHhHHHHHHHHcCCCCC-chhHHHHHHHHHhCCChhHHHHHHhhCCCCC-----------------------------
Q 012879 90 PNLGTQLHAVISKVGFQSH-VYVNTALVNMYVSLGFLKDSSKLFDEMPERN----------------------------- 139 (454)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----------------------------- 139 (454)
.++|...++ |..++ ..+...-...+-+.|++++|..+|+.+.+.+
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 888887776 33333 3355666667778888888888888774311
Q ss_pred --chhHHHHHH---HHHhcCCHHHHHHHHhhCC--------CCCc----------chHHHHHHHHHhcCChHHHHHHHHH
Q 012879 140 --LVTWNVMIT---GLVKWGELEFARSLFEEMP--------CRNV----------VSWTGIIDGYTRMNRSNEALALFRK 196 (454)
Q Consensus 140 --~~~~~~ll~---~~~~~~~~~~A~~~~~~~~--------~~~~----------~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (454)
..+|..+.+ .++..|++.+|+++++... +.|. ..-..+...+...|+.++|.++|..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 123333332 3567889999999887761 1111 1233455667788999999999988
Q ss_pred HHHccCCCCChhhHHhHHHHH---HccCc-hh-HHHHHHH------------hhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 197 MVACEYTEPSEITILAVLPAI---WQNGD-VK-SCQLIHG------------YGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~---~~~~~-~~-~a~~~~~------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
.++. .++|........+-+ ....+ ++ .+...++ .+.... -..++...+....-.+..
T Consensus 250 ~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~q----k~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 250 IIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQ----KQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhH
Confidence 8874 345553332222211 11111 11 0111111 111110 111111111111223444
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHH---
Q 012879 260 FSASKLFEDISVERKNLVSWTSIISGFA-MHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFD--- 335 (454)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~--- 335 (454)
+.+.++-.......|....=+.+..+.. +...+..+.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 5555555554443333322222222221 222456666666665554222223344445556666777777777777
Q ss_pred -----HHHHhcCCCCChhHHHHHHHHHHhcCC-------hHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHH
Q 012879 336 -----KMVEECEVLPDIKHYGCLIDMLGRAGR-------LEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 336 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
.+.+. +..|. +...+...+.+.++ .++|..+|..-....+. ..++..+...-.+.|+.++|..+
T Consensus 404 ~~~~ss~~~~-~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA-KHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh-ccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44433 44443 33445555555443 45566666654433111 22333344444556777777777
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 403 TRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
++++++..|.+..+...++.+|.+. +.+.|..+-+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 7777777777777777777666554 3344444433
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.6e-07 Score=79.19 Aligned_cols=319 Identities=8% Similarity=-0.022 Sum_probs=208.9
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.++.-.--+...+..+|.+..|+..|.... +.++. +-.++-.-...|...|+...|+.-+..+++. +||
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAv---e~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpD 104 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAV---EGDPN------NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPD 104 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---cCCch------hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--Ccc
Confidence 444555567777888888999999988887 44433 3344444455688888888888888888774 566
Q ss_pred chh-HHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCh
Q 012879 109 VYV-NTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRS 187 (454)
Q Consensus 109 ~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (454)
-.. ...-...+.+.|.++.|..=|+.+.+.++.- +....++.+.--.++-.. ....+..+.-.|+.
T Consensus 105 F~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQEHWV------------LVQQLKSASGSGDC 171 (504)
T ss_pred HHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCch
Confidence 432 2233445678888888888888776532210 000111111111111111 12234455566777
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 267 (454)
..|+.....+++ ..+.|...+..-..+|...|++..|+.=++...+.. ..+...+..+-..+...|+.+.++....
T Consensus 172 ~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs--~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 172 QNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS--QDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred hhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc--ccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 778877777776 556667777777777778888877777666666652 2255666666777777788888877777
Q ss_pred HhhhcCCChhh----HHH---H------HHHHHhcCChhHHHHHHHHHHhCCCCCcHH---HHHHHHHHHhcCCChHHHH
Q 012879 268 DISVERKNLVS----WTS---I------ISGFAMHGMGKEAVENFGRMQKVGLKPNRV---TFLSVLNACSHGGLVEEGL 331 (454)
Q Consensus 268 ~~~~~~~~~~~----~~~---l------~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~ 331 (454)
+..+..||... |.. + +......+++.++++..+...+........ .+..+-.++...|++.+|+
T Consensus 248 ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi 327 (504)
T KOG0624|consen 248 ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI 327 (504)
T ss_pred HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence 77776665532 111 1 122345678888888888877764432233 3445667778889999999
Q ss_pred HHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 012879 332 NFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT 378 (454)
Q Consensus 332 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 378 (454)
+...++.. +.|+ +.++.--..+|.-...++.|+.-|+...+..+
T Consensus 328 qqC~evL~---~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 328 QQCKEVLD---IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred HHHHHHHh---cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 99998884 4555 88888888999999999999999998887633
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.6e-07 Score=85.24 Aligned_cols=345 Identities=14% Similarity=0.039 Sum_probs=224.9
Q ss_pred HcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CCcc-h
Q 012879 102 KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC----RNVV-S 173 (454)
Q Consensus 102 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~~-~ 173 (454)
...+..|..+|..+.-+..+.|+++.+.+.|++... .....|+.+...+...|.-..|..+++.-.. |+.. .
T Consensus 316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 344556778888888888888888888888888765 3445778888888888888888888876553 2222 2
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHHHcc-CC--CCChhhHHhHHHHHHccC-----------chhHHHHHHHhhhhcCC
Q 012879 174 WTGIIDGY-TRMNRSNEALALFRKMVACE-YT--EPSEITILAVLPAIWQNG-----------DVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 174 ~~~l~~~~-~~~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~ 238 (454)
+-..-..| -+.+..++++++-.+..... +. ...+..|..+.-+|...- ...++.+.+++..+.+
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d- 474 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD- 474 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-
Confidence 22222233 34577788887777776621 11 122334444444443221 1345667777777753
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCC------
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFGRMQK-VGLKP------ 309 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p------ 309 (454)
|.|+.+...+.--|+..++++.|.+...+..... .+...|..+.-.+...+++.+|+.+.+.... .|..-
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~ 553 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGK 553 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhh
Confidence 4455555556666778888999999888887762 3777888888888888999999999887665 32200
Q ss_pred ------------cHHHHHHHHHHHhc---------C--------------CChHHHHHHHHHHHH---h----cC-----
Q 012879 310 ------------NRVTFLSVLNACSH---------G--------------GLVEEGLNFFDKMVE---E----CE----- 342 (454)
Q Consensus 310 ------------~~~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~~~---~----~~----- 342 (454)
...|...++..+-. . ++..++.+....+.. . .+
T Consensus 554 ~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~L 633 (799)
T KOG4162|consen 554 IHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKL 633 (799)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccccccc
Confidence 01122222221110 0 111111111111110 0 01
Q ss_pred ----CCC--C------hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 343 ----VLP--D------IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 343 ----~~~--~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..| + ...|......+.+.+..++|...+.+.... +-....|......+...|..++|.+.|..++..
T Consensus 634 p~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 634 PSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred CcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 011 1 123445566777888888888777777766 335677777788888999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHhcCCcCcHHH--HHHHHhhcccccC
Q 012879 410 ERGYGGDYVLMYNILAGVGRFGDAER--LRRVMDERNAFKV 448 (454)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~ 448 (454)
+|++.+....++.++.+.|+..-|.. ++..+.+.+....
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~ 754 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH 754 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH
Confidence 99999999999999999999888888 8888888776543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.2e-07 Score=80.82 Aligned_cols=95 Identities=12% Similarity=-0.012 Sum_probs=57.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH--HHHHHHHHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI--RVLNCLIDT 252 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~ 252 (454)
..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++..+....+++. ..+..+...
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~--~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~ 195 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALEL--NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALF 195 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHH
Confidence 34445666777777777777777763 34445556666666667777777777766666542111121 234456666
Q ss_pred HHhcCChhHHHHHHHHhhh
Q 012879 253 YAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~ 271 (454)
+...|++++|.++|++...
T Consensus 196 ~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 196 YLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHCCCHHHHHHHHHHHhc
Confidence 7777777777777777644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-08 Score=85.96 Aligned_cols=221 Identities=12% Similarity=0.027 Sum_probs=94.2
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCC-CC----CcchHHHHHHHHHhcC
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMP-CR----NVVSWTGIIDGYTRMN 185 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~-~~----~~~~~~~l~~~~~~~~ 185 (454)
....+.+++...|+.+.++.-...-..|.......+...+...++-+.+..-++... ++ +..........+...|
T Consensus 37 ~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~ 116 (290)
T PF04733_consen 37 RDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEG 116 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcC
Confidence 334455555556655554444433333444444333333333233444444443322 11 1111111222344445
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKL 265 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 265 (454)
++++|++++.+. .+.......+..+.+.++++.|.+.++.+.+..-...=.....+.+..+...+.+.+|.-+
T Consensus 117 ~~~~AL~~l~~~-------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~ 189 (290)
T PF04733_consen 117 DYEEALKLLHKG-------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYI 189 (290)
T ss_dssp HHHHHHCCCTTT-------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHH
T ss_pred CHHHHHHHHHcc-------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 555555555321 2334444555555555555555555555554321000001111222222223345556666
Q ss_pred HHHhhhc-CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCCh-HHHHHHHHHHHH
Q 012879 266 FEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLV-EEGLNFFDKMVE 339 (454)
Q Consensus 266 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~ 339 (454)
|+++.+. ++++.+.+.+..++...|++++|.+++.+..+... -+..++..++.+....|+. +.+.+++.++..
T Consensus 190 f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 190 FEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 6555554 23455555555555555666666655555544322 2344444455444444544 444555555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=90.41 Aligned_cols=362 Identities=14% Similarity=0.070 Sum_probs=240.0
Q ss_pred HHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CCc-hhHHHHHHHHHhcCCHH
Q 012879 81 IRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RNL-VTWNVMITGLVKWGELE 157 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~ll~~~~~~~~~~ 157 (454)
.++....|+++.|...|.+.+... ++|...|..-..+|++.|++++|.+=-.+..+ |+. ..|+-...++.-.|+++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 345678899999999999999877 55888999999999999999999887766654 543 47999999999999999
Q ss_pred HHHHHHhhCCC--C-CcchHHHHHHHHHhcCChHHH---HHHHHHHHHcc--CCCCChhhHHhHHHHHHcc---------
Q 012879 158 FARSLFEEMPC--R-NVVSWTGIIDGYTRMNRSNEA---LALFRKMVACE--YTEPSEITILAVLPAIWQN--------- 220 (454)
Q Consensus 158 ~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~--------- 220 (454)
+|+.-|.+-.+ | |...++-+..++.......+. -.++......+ ........|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 99999998775 2 334556666655111000000 00000000000 0000001122222111110
Q ss_pred -CchhHHHHHHHh-----hhhcCC-------CC----------c-----------hHHHHHHHHHHHHhcCChhHHHHHH
Q 012879 221 -GDVKSCQLIHGY-----GEKRGF-------TA----------F-----------DIRVLNCLIDTYAKCGCIFSASKLF 266 (454)
Q Consensus 221 -~~~~~a~~~~~~-----~~~~~~-------~~----------~-----------~~~~~~~l~~~~~~~g~~~~a~~~~ 266 (454)
..+..+...+.. ....+. .| . -..-...+.+...+..+++.|++.+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 001111111100 000000 00 0 1123456888899999999999999
Q ss_pred HHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH-------HHHHHhcCCChHHHHHHHHHHHH
Q 012879 267 EDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS-------VLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 267 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-------l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
........+..-++....+|...|.+..+...-....+.|-. ...-|+. +..++.+.++++.++.+|++...
T Consensus 248 ~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt 326 (539)
T KOG0548|consen 248 AKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT 326 (539)
T ss_pred HHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence 998887645555667778899999888888777777666533 2223332 33466677888999999988776
Q ss_pred hcCCCCChhHH-------------------------HHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcC
Q 012879 340 ECEVLPDIKHY-------------------------GCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFH 393 (454)
Q Consensus 340 ~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 393 (454)
. ...|+...- ..=...+.+.|++..|+..|.+++...| |...|....-+|.+.
T Consensus 327 e-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 327 E-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred h-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 5 334432211 1113456788999999999999888744 678899999999999
Q ss_pred CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
|.+..|+.-.+..++++|.....|..=+.++....+|+.|.+.|.+-.+.+.
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999999999999998888888888899999999999999988877653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.3e-08 Score=80.47 Aligned_cols=306 Identities=11% Similarity=0.059 Sum_probs=141.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHH-HHHHHHHhcC
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWGELEFARSLFEEMPC--RNVVSWT-GIIDGYTRMN 185 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~~~~~~ 185 (454)
+.+.+..+.+..++.+|++++..-.+. +......+..+|-...++..|-..++++.. |...-|. .-...+.+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~ 92 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC 92 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence 444445555556666666665554432 223444455555566666666666665553 3222222 1233445555
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHH--HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLP--AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.+..|+++...|.+ .|+...-..-+. .....+|+..+..+.++....| +..+.+.......+.|+++.|.
T Consensus 93 i~ADALrV~~~~~D----~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAv 164 (459)
T KOG4340|consen 93 IYADALRVAFLLLD----NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAV 164 (459)
T ss_pred ccHHHHHHHHHhcC----CHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHH
Confidence 66666666655533 122221111111 1234455555555555443322 3344444444455555555555
Q ss_pred HHHHHhhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHH----HHHHHHHHhcCCChHHHHHHHHHH
Q 012879 264 KLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVT----FLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 264 ~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
+-|+...+.. .....||..+ +..+.|+++.|++...+++++|++..+.. -+-.+++- ..|+. ..+.+..
T Consensus 165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~Sa 239 (459)
T KOG4340|consen 165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQSA 239 (459)
T ss_pred HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHHHH
Confidence 5555555442 1223343333 23344555555555555555544311100 00000000 00000 0000000
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 338 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
-...+|.-...+.+.|+++.|.+.+-.|..+ ..|++|...+.-.- ..+++-+..+-+.-+++..|-+.
T Consensus 240 --------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ 310 (459)
T KOG4340|consen 240 --------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPP 310 (459)
T ss_pred --------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCCh
Confidence 0011222222345667777777777777665 44566655443221 23445555555666666666666
Q ss_pred CcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 415 GDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
.++..++..|++..-++-|-.++.+
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6777777777777766666665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-06 Score=88.73 Aligned_cols=324 Identities=12% Similarity=0.008 Sum_probs=165.1
Q ss_pred HHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC----CC---c-----chHHHHHHHHH
Q 012879 119 YVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKWGELEFARSLFEEMPC----RN---V-----VSWTGIIDGYT 182 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~---~-----~~~~~l~~~~~ 182 (454)
....|+++.+...++.+.. .+..........+...|++++|...+..... .+ . .....+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3345555555555555431 1222222233334455666666665544321 00 0 11112233445
Q ss_pred hcCChHHHHHHHHHHHHccCCCCCh----hhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSE----ITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~ 254 (454)
..|++++|...+++.... ....+. .....+...+...|+++.|...+++.... |...........+...+.
T Consensus 464 ~~g~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 464 NDGDPEEAERLAELALAE-LPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred hCCCHHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 667777777777776552 111111 22344445556677777777776666542 111111234445566667
Q ss_pred hcCChhHHHHHHHHhhhc-----CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCC--cHHHHHHHHHHH
Q 012879 255 KCGCIFSASKLFEDISVE-----RK----NLVSWTSIISGFAMHGMGKEAVENFGRMQKV--GLKP--NRVTFLSVLNAC 321 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~~-----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p--~~~~~~~l~~~~ 321 (454)
..|+++.|...+++.... .+ ....+..+...+...|++++|...+.+.... ...+ ....+..+....
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 777777777777665443 11 1122334445556667777777777665442 1111 122333344556
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHHhcCChHHHHHHHhcCCCCC-CcH----hHHHHHHHHHH
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHY-----GCLIDMLGRAGRLEQAEKTALGIPSEI-TDV----VVWRTLLGACS 391 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~----~~~~~l~~~~~ 391 (454)
...|++++|...++..............+ ...+..+...|+.+.|.+++....... ... ..+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 66777777777777664421100000000 111233445677777777766554431 111 11334556666
Q ss_pred cCCChhHHHHHHHHHHHhhcCC------CCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 392 FHGNVEMGERVTRKILEMERGY------GGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
..|++++|...++++.+..... ..+...++.++.+.|+.++|.+.+.+..+.
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777776653221 123445667777777777777777766553
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-06 Score=75.14 Aligned_cols=405 Identities=10% Similarity=0.042 Sum_probs=221.5
Q ss_pred HHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHH
Q 012879 19 SHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHA 98 (454)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 98 (454)
+.-.+.+| -|+.+|+.||+-+..+ .++++.+.++++. ..-+. +...|..-|..-....+++..+.+|.
T Consensus 10 ~~rie~nP--~di~sw~~lire~qt~-~~~~~R~~YEq~~---~~FP~------s~r~W~~yi~~El~skdfe~VEkLF~ 77 (656)
T KOG1914|consen 10 RERIEENP--YDIDSWSQLIREAQTQ-PIDKVRETYEQLV---NVFPS------SPRAWKLYIERELASKDFESVEKLFS 77 (656)
T ss_pred HHHHhcCC--ccHHHHHHHHHHHccC-CHHHHHHHHHHHh---ccCCC------CcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 45556666 8999999999988666 9999999999998 44333 66788888999999999999999999
Q ss_pred HHHHcCCCCCchhHHHHHHHHHh-CCChhHHHH----HHhhCC-----C-CCchhHHHHHHH---------HHhcCCHHH
Q 012879 99 VISKVGFQSHVYVNTALVNMYVS-LGFLKDSSK----LFDEMP-----E-RNLVTWNVMITG---------LVKWGELEF 158 (454)
Q Consensus 99 ~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~----~~~~~~-----~-~~~~~~~~ll~~---------~~~~~~~~~ 158 (454)
..+..- .+...|...+..--+ .|+...+.. .|+-.. + .+...|+..+.. +....+++.
T Consensus 78 RCLvkv--LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~ 155 (656)
T KOG1914|consen 78 RCLVKV--LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITA 155 (656)
T ss_pred HHHHHH--hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHH
Confidence 988764 456677766654332 344433222 222111 1 234456665544 445667888
Q ss_pred HHHHHhhCCC-C---------CcchHHHHHHHH-------HhcCChHHHHHHHHHHHHcc-CCCCChhh-----------
Q 012879 159 ARSLFEEMPC-R---------NVVSWTGIIDGY-------TRMNRSNEALALFRKMVACE-YTEPSEIT----------- 209 (454)
Q Consensus 159 A~~~~~~~~~-~---------~~~~~~~l~~~~-------~~~~~~~~a~~~~~~~~~~~-~~~~~~~~----------- 209 (454)
..+++.++.. | |-..|..=|+.. -+...+..|.+++++....- |......+
T Consensus 156 vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~ 235 (656)
T KOG1914|consen 156 VRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQ 235 (656)
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHH
Confidence 8888888764 1 212222212111 12334566666666654310 21111111
Q ss_pred ----HHhHHHHHHccC------ch--hHHHHHHHhhhhcCCCCchHHHHHHHH-------HHHHhcCC-------hhHHH
Q 012879 210 ----ILAVLPAIWQNG------DV--KSCQLIHGYGEKRGFTAFDIRVLNCLI-------DTYAKCGC-------IFSAS 263 (454)
Q Consensus 210 ----~~~l~~~~~~~~------~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~-------~~~a~ 263 (454)
|..++.---..+ .. ....-++++.... .+..+.+|.-.. +.+...|+ .+++.
T Consensus 236 qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~--l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~ 313 (656)
T KOG1914|consen 236 QVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLY--LGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAA 313 (656)
T ss_pred HHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHH
Confidence 222222111110 00 0111112222111 111222222211 22223333 33444
Q ss_pred HHHHHhhhc--CCChhhHHHHHHHHH---hcCChhHHHHHHHHHHhC-CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 264 KLFEDISVE--RKNLVSWTSIISGFA---MHGMGKEAVENFGRMQKV-GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
.+++..... ..+..+|..+.+.-- ..+..+.....++++... .+.| ..+|..+++...+...++.|..+|.++
T Consensus 314 ~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~ka 392 (656)
T KOG1914|consen 314 SIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKA 392 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence 444443332 112223333332111 111345555666665543 2233 345666666666667777777777777
Q ss_pred HHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHH-HHHHHHHHcCCChhHHHHHHHHHHHhhcC---
Q 012879 338 VEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVW-RTLLGACSFHGNVEMGERVTRKILEMERG--- 412 (454)
Q Consensus 338 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--- 412 (454)
.+. +..+ ++.++++++.-|| .++.+-|.++|+--....+|...| ...+.-+...++-..|..+|++++.....
T Consensus 393 R~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k 470 (656)
T KOG1914|consen 393 RED-KRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK 470 (656)
T ss_pred hhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence 776 5444 5666677776554 566777777777666664544433 44556666677777777777777766221
Q ss_pred CCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 413 YGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
....|..++.--...|+...+.++-+++-.
T Consensus 471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 471 SKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 335677777777777777777766655543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=5.7e-06 Score=79.71 Aligned_cols=367 Identities=10% Similarity=0.068 Sum_probs=199.2
Q ss_pred HHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHH
Q 012879 21 LLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVI 100 (454)
Q Consensus 21 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 100 (454)
+.+.-+...|+.-.+..+.++...+-+.+-+++++++. -.... -+-+...-|.|+-.. -.-+..++.++.+++
T Consensus 974 v~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIv---L~~S~---Fse~~nLQnLLiLtA-ikad~trVm~YI~rL 1046 (1666)
T KOG0985|consen 974 VQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIV---LDNSV---FSENRNLQNLLILTA-IKADRTRVMEYINRL 1046 (1666)
T ss_pred HHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHh---cCCcc---cccchhhhhhHHHHH-hhcChHHHHHHHHHh
Confidence 33344445677777888889999999999999999886 32221 111223333333333 333455666666666
Q ss_pred HHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC-------------------------CCchhHHHHHHHHHhcCC
Q 012879 101 SKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-------------------------RNLVTWNVMITGLVKWGE 155 (454)
Q Consensus 101 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------~~~~~~~~ll~~~~~~~~ 155 (454)
...+ .|+ +...+...+-+++|..+|+...- ..+..|..+..+-.+.|.
T Consensus 1047 dnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1047 DNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred ccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCc
Confidence 5543 222 22333444555666666554321 123345555555555555
Q ss_pred HHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
+.+|++-|-+. .|+..|..++....+.|.+++-.+++.-.++. .-.|.. =..++-+|++.+++.+.+++..
T Consensus 1120 v~dAieSyika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~i--d~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYI--DSELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred hHHHHHHHHhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccc--hHHHHHHHHHhchHHHHHHHhc----
Confidence 55555544332 24444555555555555555555555444443 222322 2344555555555544443321
Q ss_pred cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 236 RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
.|+......+.+-+...|.++.|.-+|..+ ..|..|...+...|++..|.+.-++. .+..||.
T Consensus 1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred ----CCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence 114444444555555555555555554433 33667777777777777777665442 2566787
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCC
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g 394 (454)
.+-.+|...+.+.-| +|... ++.....-...++.-|...|.+++.+.+++..... ......|+-|.-.|.+-
T Consensus 1254 ~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred HHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-
Confidence 777787776655433 12211 22234455677888888899999998888887765 33445566666666554
Q ss_pred ChhHHHHHHHHHHHhh--------cCCCCcHHHHHHHHHhcCCcCcHH
Q 012879 395 NVEMGERVTRKILEME--------RGYGGDYVLMYNILAGVGRFGDAE 434 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~ 434 (454)
++++-.+.++-....- .+....|..+...|.+-..++.|.
T Consensus 1327 kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3344433333222110 012335666777777766666654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-08 Score=89.10 Aligned_cols=252 Identities=13% Similarity=0.026 Sum_probs=197.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
..-+.+.|+..+|.-.|+..++ ..|-+...|..|.......++-..|+..+++..+. .|.+..+...|.-.|...|
T Consensus 292 G~~lm~nG~L~~A~LafEAAVk--qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVK--QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHh--hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhh
Confidence 4456788999999999999988 44667889999999999999999999999999997 6779999999999999999
Q ss_pred ChhHHHHHHHHhhhcCCChh----------hHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCcHHHHHHHHHHHhcCCC
Q 012879 258 CIFSASKLFEDISVERKNLV----------SWTSIISGFAMHGMGKEAVENFGRMQ-KVGLKPNRVTFLSVLNACSHGGL 326 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~~~ 326 (454)
.-..|.+.++.-....|.-. .-+. ..+..........++|-++. +.+..+|+.....|.-.|--.|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 99999999988755422110 0000 11222223445555555554 45545677777777777888999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
+++|.+.|+.+... -+-|..+|+.|...++...+.++|+..|+++++..|. +++...|..+|...|.+++|...|-.
T Consensus 446 fdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 99999999999863 2345788999999999999999999999999998776 56778899999999999999999999
Q ss_pred HHHhhcC-----C-----CCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 406 ILEMERG-----Y-----GGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 406 ~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
++.+.+. . ...|..|-.++.-.++.+.+.+..
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 9877655 1 136777777788888887555543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-07 Score=92.55 Aligned_cols=235 Identities=14% Similarity=0.150 Sum_probs=182.0
Q ss_pred cchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--------CCchhHHHHHHHHHhcCCHHHHHH
Q 012879 90 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--------RNLVTWNVMITGLVKWGELEFARS 161 (454)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~A~~ 161 (454)
++.|.+....++. . |-+...|...|......++.++|.+++++... .-...|.++++.-..-|.-+...+
T Consensus 1441 pesaeDferlvrs-s-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1441 PESAEDFERLVRS-S-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred CcCHHHHHHHHhc-C-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence 4444444444333 2 44566788999999999999999999998874 234578888888888888888999
Q ss_pred HHhhCCC-CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCC
Q 012879 162 LFEEMPC-RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFT 239 (454)
Q Consensus 162 ~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (454)
+|++..+ -| ...|..|...|.+.+++++|.++|+.|.+. +.-....|...+..+.+.++-+.|..++.++.+. .
T Consensus 1519 VFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--l 1594 (1710)
T KOG1070|consen 1519 VFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--L 1594 (1710)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--c
Confidence 9998876 23 357888999999999999999999999984 4466778889999999999999999999998886 4
Q ss_pred Cc--hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--HHH
Q 012879 240 AF--DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTF 314 (454)
Q Consensus 240 ~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 314 (454)
|. ........+..-.+.|+.+.+..+|+......| -...|+..|+.-.++|+.+.+..+|++....++.|-. ..|
T Consensus 1595 Pk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfff 1674 (1710)
T KOG1070|consen 1595 PKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFF 1674 (1710)
T ss_pred chhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHH
Confidence 43 455667778888899999999999999888766 6678999999999999999999999999988777643 345
Q ss_pred HHHHHHHhcCCChHHH
Q 012879 315 LSVLNACSHGGLVEEG 330 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a 330 (454)
...+..=-..|+-+.+
T Consensus 1675 KkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1675 KKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHHHHHHHhcCchhhH
Confidence 5555444444554433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.9e-07 Score=84.91 Aligned_cols=259 Identities=12% Similarity=0.114 Sum_probs=158.1
Q ss_pred hhhhhHHHHHH--HHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHc-C-
Q 012879 29 HHSQLFNTLLH--FYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKV-G- 104 (454)
Q Consensus 29 ~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~- 104 (454)
=|..|-..+++ .|..-|+.+.|.+-.+.++ +...|..+.+.|.+.++.+-|.-.+..|... |
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--------------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--------------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--------------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 35556666665 4778899999999888886 6778999999999988888777666665431 1
Q ss_pred -------CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-CcchHHH
Q 012879 105 -------FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCR-NVVSWTG 176 (454)
Q Consensus 105 -------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~ 176 (454)
..|+ .+-....-.....|.+++|+.++++..+ |..|-..|...|.+++|.++-+.=..- =..||..
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~ 863 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYN 863 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHH
Confidence 1122 2223344445678999999999988755 555667788889999998887654331 2246767
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
....+-..++.+.|++.|++.... -...+..|. .++...+.+.+.+ .+...|.......-..
T Consensus 864 yA~~Lear~Di~~AleyyEK~~~h-----afev~rmL~------e~p~~~e~Yv~~~-------~d~~L~~WWgqYlES~ 925 (1416)
T KOG3617|consen 864 YAKYLEARRDIEAALEYYEKAGVH-----AFEVFRMLK------EYPKQIEQYVRRK-------RDESLYSWWGQYLESV 925 (1416)
T ss_pred HHHHHHhhccHHHHHHHHHhcCCh-----HHHHHHHHH------hChHHHHHHHHhc-------cchHHHHHHHHHHhcc
Confidence 777777788899999988875221 111111111 0111111111111 1445566666666666
Q ss_pred CChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 257 GCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 257 g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
|+.+.|+.+|..... |-.++...|-.|+.++|-++-++- | |......+.+.|-..|++.+|..+|.+
T Consensus 926 GemdaAl~~Y~~A~D-------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 926 GEMDAALSFYSSAKD-------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred cchHHHHHHHHHhhh-------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 777777777766554 455555555566666666554431 1 333344455566666666666666555
Q ss_pred HH
Q 012879 337 MV 338 (454)
Q Consensus 337 ~~ 338 (454)
..
T Consensus 993 Aq 994 (1416)
T KOG3617|consen 993 AQ 994 (1416)
T ss_pred HH
Confidence 43
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2e-06 Score=80.96 Aligned_cols=213 Identities=12% Similarity=0.113 Sum_probs=151.6
Q ss_pred hhhhhhHHHHHHHHHccCChHHHHHHHHHHHHH-----hcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHH
Q 012879 28 LHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQI-----YTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISK 102 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 102 (454)
..+..+|..+.+.|.+.++++-|.-.+-.|.+. .+...++ | + .+=....-.....|..++|..+|.+..+
T Consensus 754 IkS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~-~---~-e~eakvAvLAieLgMlEeA~~lYr~ckR 828 (1416)
T KOG3617|consen 754 IKSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN-G---E-EDEAKVAVLAIELGMLEEALILYRQCKR 828 (1416)
T ss_pred HhhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC-C---c-chhhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 467789999999999999999998888877631 0011110 1 1 2222333344578899999999998876
Q ss_pred cCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCC-CchhHHHHHHHHHhcCCHHHHHHHHhhCCC-------------
Q 012879 103 VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPER-NLVTWNVMITGLVKWGELEFARSLFEEMPC------------- 168 (454)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~------------- 168 (454)
.+ .|=+.|-..|.+++|.++-+.-.+- =-.||.....-+-..+|++.|++.|++...
T Consensus 829 ~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p 899 (1416)
T KOG3617|consen 829 YD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYP 899 (1416)
T ss_pred HH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhCh
Confidence 54 3445677889999999887654432 224676777777788899999999887642
Q ss_pred ----------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCC
Q 012879 169 ----------RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 169 ----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (454)
.|...|.-....+-..|+.+.|+.+|....+ |..+++..|-.|+.++|.++-++ .|
T Consensus 900 ~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~kAa~iA~e---sg- 965 (1416)
T KOG3617|consen 900 KQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDKAARIAEE---SG- 965 (1416)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchHHHHHHHh---cc-
Confidence 2444555566666677888888888877765 45667777788888888877654 22
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
|......|.+.|-..|++.+|..+|.+...
T Consensus 966 ---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 966 ---DKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred ---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 667777888889999999999988887654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=3.6e-07 Score=90.40 Aligned_cols=250 Identities=12% Similarity=0.106 Sum_probs=190.6
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcC-CCC--chHHHHHHHHHHHHhcCChhHH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRG-FTA--FDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~~l~~~~~~~g~~~~a 262 (454)
.++.|.+.-+..+. .|-+...|...+......++.++|.++.+++...= +.. .-..+|.++++.-..-|.-+..
T Consensus 1440 ~pesaeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence 34455554444443 24456778888888899999999999999887751 111 1245788888888888888899
Q ss_pred HHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 012879 263 SKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECE 342 (454)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (454)
.++|+++.+......+|..|...|.+.+.+++|.++++.|.+. ..-....|...+..+.+.++-+.|..++.++.+...
T Consensus 1517 ~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 9999999886555678899999999999999999999999875 234677888899999999999999999999987421
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC---CcHH
Q 012879 343 VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---GDYV 418 (454)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 418 (454)
-.-........+..-.+.|+.+.+..+|+......| ....|+.+++.-.++|+.+.+..+|+++++++.... ..|.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 112345556667777899999999999998887744 467899999999999999999999999998876632 2344
Q ss_pred HHHHHHHhcCCcCcHHHHHHH
Q 012879 419 LMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~ 439 (454)
.++..-...|+-+.++.+-.+
T Consensus 1676 kwLeyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHHHHhcCchhhHHHHHHH
Confidence 556666666777666555433
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.1e-06 Score=80.02 Aligned_cols=241 Identities=15% Similarity=0.175 Sum_probs=159.5
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHH
Q 012879 169 RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC 248 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 248 (454)
.|+......+.++...+-+.+-+++++++.-.+..-....-...++-.-+-..+...+.++.+++-.-. .++
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyD--a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYD--APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCC--chh------
Confidence 456666677788888888888888888875431111111222222222233334455555555554432 111
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc-----------------------CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVE-----------------------RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
+.......+-+++|.++|++.... -..+.+|..+..+-.+.|...+|++-|-+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence 122222333344444444432110 124567899999999999999998877542
Q ss_pred CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHH
Q 012879 306 GLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRT 385 (454)
Q Consensus 306 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 385 (454)
-|+..|..+++...+.|.+++-.+++....+. .-.|.+. +.|+-+|++.++..+.++++.. |+......
T Consensus 1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi~g-----pN~A~i~~ 1199 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFIAG-----PNVANIQQ 1199 (1666)
T ss_pred ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHhcC-----CCchhHHH
Confidence 36778999999999999999999999988876 5566544 6789999999999998877653 77777788
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
+.+-|...|.++.|.-++. +...|..++..+...|.++.|...-++
T Consensus 1200 vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1200 VGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888888888888877766 344677777777777877777665544
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.7e-07 Score=78.83 Aligned_cols=185 Identities=11% Similarity=-0.007 Sum_probs=122.3
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--HHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTF 314 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 314 (454)
.....+..++..+...|+++.|...|+++....|+. ..+..+..++...|++++|...++++.+....... .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 356667777777888888888888888877765532 35566777778888888888888887764321111 133
Q ss_pred HHHHHHHhcC--------CChHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHH
Q 012879 315 LSVLNACSHG--------GLVEEGLNFFDKMVEECEVLPDI-KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRT 385 (454)
Q Consensus 315 ~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 385 (454)
..+..++... |+.++|.+.++.+... .|+. ..+..+..... ..... ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~------------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL------------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH------------HHHHHH
Confidence 3344444433 6788888888888865 2332 22222211110 10000 011124
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+...+.+.|++++|+..++++++..|.+ +..+..++.++.+.|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5667889999999999999999887764 3578899999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.7e-06 Score=80.51 Aligned_cols=284 Identities=14% Similarity=0.145 Sum_probs=141.9
Q ss_pred HHHHHHHhCCChhHHHHHHhhC--CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc--------hH---------
Q 012879 114 ALVNMYVSLGFLKDSSKLFDEM--PERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV--------SW--------- 174 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--------~~--------- 174 (454)
+.|..|.+.|.+..|.+....= ...|......+..++.+..-+++|-++|+.+..++.. .|
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf 699 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF 699 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh
Confidence 4567777777777666543221 1245555555666666666666666666666543211 00
Q ss_pred ----------HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 175 ----------TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 175 ----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
......+...|+++.|+.-|-+.. .....+.+......|.+|..+++.+..+.. ...
T Consensus 700 afp~evv~lee~wg~hl~~~~q~daainhfiea~----------~~~kaieaai~akew~kai~ildniqdqk~---~s~ 766 (1636)
T KOG3616|consen 700 AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN----------CLIKAIEAAIGAKEWKKAISILDNIQDQKT---ASG 766 (1636)
T ss_pred hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh----------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccc
Confidence 011111222233333322222211 111223334444555555555555554421 233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 324 (454)
.|..+.+.|...|+++.|.++|-+... ++-.|..|.+.|+++.|.++-.+. .|...+...|..-..-+-+.
T Consensus 767 yy~~iadhyan~~dfe~ae~lf~e~~~-------~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldeh 837 (1636)
T KOG3616|consen 767 YYGEIADHYANKGDFEIAEELFTEADL-------FKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEH 837 (1636)
T ss_pred cchHHHHHhccchhHHHHHHHHHhcch-------hHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhh
Confidence 445555666666666666666654332 444555666666666666554432 23333444444444445555
Q ss_pred CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
|++.+|.++|-.+ |. |+ .-|..|-+.|..++.+++.++-... .-..|...+..-|-..|+...|.+.|-
T Consensus 838 gkf~eaeqlyiti----~~-p~-----~aiqmydk~~~~ddmirlv~k~h~d-~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 838 GKFAEAEQLYITI----GE-PD-----KAIQMYDKHGLDDDMIRLVEKHHGD-HLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred cchhhhhheeEEc----cC-ch-----HHHHHHHhhCcchHHHHHHHHhChh-hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 6666665555443 21 32 2344566666666666665554332 112344555566666777777776665
Q ss_pred HHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 405 KILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
++. -|.....+|...+-|++|-++-+
T Consensus 907 ea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 907 EAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 543 34455566666666666665543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.9e-07 Score=79.50 Aligned_cols=165 Identities=15% Similarity=0.127 Sum_probs=69.6
Q ss_pred hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCCh--hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHH
Q 012879 259 IFSASKLFEDISVERK-NLVSWTSIISGFAMHGMG--KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFD 335 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~--~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 335 (454)
+++++..++++.+..| +..+|+...-.+.+.|+. ++++.+++++.+...+ |..+|.....++...|+++++++.++
T Consensus 88 l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 88 LEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred HHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3444444444444333 333343333333333321 3344444444443211 33444444444444444555555555
Q ss_pred HHHHhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHhcCCCC-CCcHhHHHHHHHHHHcC----CChhHHHHHH
Q 012879 336 KMVEECEVLPDIKHYGCLIDMLGRA---GRL----EQAEKTALGIPSE-ITDVVVWRTLLGACSFH----GNVEMGERVT 403 (454)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~----g~~~~A~~~~ 403 (454)
.+.+. +. .+...|+.....+.+. |.. ++++++..++... +-|...|+.+...+... ++..+|.+.+
T Consensus 167 ~~I~~-d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~ 244 (320)
T PLN02789 167 QLLEE-DV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVC 244 (320)
T ss_pred HHHHH-CC-CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHH
Confidence 54443 21 1223333332222222 111 2344444333333 22445555555555442 2334466666
Q ss_pred HHHHHhhcCCCCcHHHHHHHHHh
Q 012879 404 RKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.++.+.++.++.+...+++.|..
T Consensus 245 ~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 245 LEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHhhcccCCcHHHHHHHHHHHHh
Confidence 66555555555555566666654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.3e-06 Score=79.63 Aligned_cols=313 Identities=14% Similarity=0.135 Sum_probs=190.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHH
Q 012879 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTA 114 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (454)
.+.++++...|.-++|-++-+ ..| .+ ...|+.|.+.|.+..|.+....-.. +..|......
T Consensus 593 ~sy~q~l~dt~qd~ka~elk~------sdg----------d~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ 653 (1636)
T KOG3616|consen 593 RSYLQALMDTGQDEKAAELKE------SDG----------DG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEH 653 (1636)
T ss_pred HHHHHHHHhcCchhhhhhhcc------ccC----------cc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHH
Confidence 445566666777666654311 111 11 2456777788877776654332111 2334444444
Q ss_pred HHHHHHhCCChhHHHHHHhhCCCCCch--------hH-------------------HHHHHHHHhcCCHHHHHHHHhhCC
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPERNLV--------TW-------------------NVMITGLVKWGELEFARSLFEEMP 167 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~-------------------~~ll~~~~~~~~~~~A~~~~~~~~ 167 (454)
+..++.+..-+++|-.+|+++..++.. .| ...-..+...|+++.|+..|-+..
T Consensus 654 ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~ 733 (1636)
T KOG3616|consen 654 IAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN 733 (1636)
T ss_pred HHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh
Confidence 444444444445555555544432211 01 111122334555555555553321
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHH
Q 012879 168 CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLN 247 (454)
Q Consensus 168 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (454)
..-..+.+.....+|.+|+.+++.+... +.-...|..+...|+..|+++.|+++|-+. ..++
T Consensus 734 -----~~~kaieaai~akew~kai~ildniqdq---k~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~ 795 (1636)
T KOG3616|consen 734 -----CLIKAIEAAIGAKEWKKAISILDNIQDQ---KTASGYYGEIADHYANKGDFEIAEELFTEA----------DLFK 795 (1636)
T ss_pred -----hHHHHHHHHhhhhhhhhhHhHHHHhhhh---ccccccchHHHHHhccchhHHHHHHHHHhc----------chhH
Confidence 1223345666778899999999888764 344566888889999999999999888643 2355
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCCh
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLV 327 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 327 (454)
..+..|.+.|+++.|.++-++..........|-+-..-+-+.|++.+|.+++-... .|+ ..|..|-+.|..
T Consensus 796 dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ 866 (1636)
T KOG3616|consen 796 DAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLD 866 (1636)
T ss_pred HHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcc
Confidence 67888999999999999888877633355667777777888899888888775432 343 346677788888
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 328 EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
+..+++.++.... .-..|...+..-|...|++..|.+-|-+.-+ |..-++.|...+-+++|.++.+
T Consensus 867 ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~flea~d-------~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 867 DDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-------FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred hHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHHHhhhh-------HHHHHHHhhhhhhHHHHHHHHh
Confidence 8877776655322 1123455667777788888888877765543 4455556666666666655443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-07 Score=75.62 Aligned_cols=155 Identities=15% Similarity=0.054 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG 325 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 325 (454)
..+-..+...|+-+....+..+.....| |....+..+....+.|++..|...+++..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 4444444444544444444444333222 33344444455555555555555555544431 334455555555555555
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
+++.|..-|.+..+. ..-++..++.+.-.|.-.|+.+.|..++.......+ |..+-..+.......|++++|..+..
T Consensus 149 r~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 555555555554442 111233344444444445555555555544444322 34444444444445555555544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-07 Score=87.42 Aligned_cols=223 Identities=13% Similarity=-0.024 Sum_probs=174.6
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHH
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSII 283 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~ 283 (454)
+|--..-..+...+...|-...|..+++++ ..+..++.+|...|+..+|..+..+..+.+||+..|..+.
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LG 464 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLG 464 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhh
Confidence 343344455666677778888888877754 4466678889999999999998888887778888888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
+......-+++|.++.+..... .-..+.......++++++.+.|+.-.+.+.+ -..+|-.+..+..+.+++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhh
Confidence 8887777788888888764322 1111222233478999999999988765333 456777888888899999
Q ss_pred HHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 364 EQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
..|.+.|.......|| ...||.+-.+|.+.|+..+|...+.++++.+..+...|....-.....|.+++|.+.+.++.+
T Consensus 536 q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 9999999988887564 678999999999999999999999999999977888888888888999999999999999877
Q ss_pred ccc
Q 012879 443 RNA 445 (454)
Q Consensus 443 ~~~ 445 (454)
...
T Consensus 616 ~~~ 618 (777)
T KOG1128|consen 616 LRK 618 (777)
T ss_pred hhh
Confidence 543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.7e-06 Score=80.42 Aligned_cols=228 Identities=14% Similarity=0.109 Sum_probs=165.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc
Q 012879 143 WNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD 222 (454)
Q Consensus 143 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (454)
-..+...+...|-...|..+|+++. .|...+.+|...|+..+|..+..+-.+. +||+.-|..+.+......-
T Consensus 401 q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek---~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK---DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC---CCcchhHHHhhhhccChHH
Confidence 3456667788888888888888764 5777888888888888888888877753 6888888888887777777
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
+++|.++.+..... +-..+.....+.++++++.+.|+.-....| ...+|-.+..+..+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 77777777654332 223333334457888888888887777655 667788777788888888888888887
Q ss_pred HHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---C
Q 012879 302 MQKVGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---I 377 (454)
Q Consensus 302 m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~ 377 (454)
-... .|+ ...|+.+-.+|.+.++..+|...+.+..+. + .-+..+|...+....+.|.+++|.+.+.++... .
T Consensus 545 cvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~ 620 (777)
T KOG1128|consen 545 CVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKY 620 (777)
T ss_pred Hhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhc
Confidence 7664 444 457888888888888888888888888876 4 345667777777788888888888888776554 2
Q ss_pred CcHhHHHHHHHHH
Q 012879 378 TDVVVWRTLLGAC 390 (454)
Q Consensus 378 p~~~~~~~l~~~~ 390 (454)
-|..+...++...
T Consensus 621 ~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 621 KDDEVLLIIVRTV 633 (777)
T ss_pred ccchhhHHHHHHH
Confidence 2444444444433
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.2e-06 Score=73.15 Aligned_cols=208 Identities=11% Similarity=0.018 Sum_probs=121.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC-chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
-..+...++.++|+.++.++++. .+-+..+|+.-..++...| +++++...++.+.+. .|.+..+|+....++.+.
T Consensus 44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHc
Confidence 33445556677777777777653 2333344554445555555 456777777777665 344555666555555555
Q ss_pred CCh--hHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC---CCh---
Q 012879 257 GCI--FSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG---GLV--- 327 (454)
Q Consensus 257 g~~--~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---~~~--- 327 (454)
|+. +++..+++++.+..| |..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred CchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence 542 566777767666644 6667777777777777777777777777776543 344444444333332 222
Q ss_pred -HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc----CChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHc
Q 012879 328 -EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA----GRLEQAEKTALGIPSE-ITDVVVWRTLLGACSF 392 (454)
Q Consensus 328 -~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~ 392 (454)
++...+...++.. .+-+...|+.+...+... ++..+|.+++.+.... ..+......|++.|..
T Consensus 199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 3455666555543 233456666666666652 3445677777665554 3345666667777764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.5e-07 Score=75.76 Aligned_cols=153 Identities=10% Similarity=0.068 Sum_probs=96.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (454)
+..|...|+++.+....+.+.. |. . .+...++.+++...+++..+.. +.+...|..+...|...|++++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~--~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~ 91 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD--PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDN 91 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC--cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 4567777777776555433322 11 0 1112455666666666666543 3466677777777777777777
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHH-HhcCC--hHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 330 GLNFFDKMVEECEVLPDIKHYGCLIDML-GRAGR--LEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
|...|++..+. .+.+...+..+..++ ...|+ .++|.+++++.....| +..++..+...+...|++++|+..|++
T Consensus 92 A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 92 ALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777653 223456666666653 55565 4777777777777633 556677777777777777777777777
Q ss_pred HHHhhcCCCC
Q 012879 406 ILEMERGYGG 415 (454)
Q Consensus 406 ~~~~~~~~~~ 415 (454)
+++..|.+..
T Consensus 170 aL~l~~~~~~ 179 (198)
T PRK10370 170 VLDLNSPRVN 179 (198)
T ss_pred HHhhCCCCcc
Confidence 7777776553
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.80 E-value=7.7e-07 Score=75.99 Aligned_cols=184 Identities=13% Similarity=-0.000 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCh---hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH---
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSE---ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR--- 244 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--- 244 (454)
...+..+...+...|++++|...|+++... .+.+. .++..+..++...|+++.|...++.+.+.. |.++.
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~ 108 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDADY 108 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchHH
Confidence 344555555566666666666666665542 11111 244555555566666666666666665542 21221
Q ss_pred HHHHHHHHHHhc--------CChhHHHHHHHHhhhcCCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 245 VLNCLIDTYAKC--------GCIFSASKLFEDISVERKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 245 ~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
.+..+..++... |++++|.+.|+++....|+.. .+..+..... ... .. .....
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~ 170 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRN------RL--------AGKEL 170 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHH------HH--------HHHHH
Confidence 333444444433 566777777777766555432 2211111000 000 00 00011
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+...+.+.|++++|...++.+...++-.| ....+..+..++.+.|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344456667777777777777766522222 2456666777777777777777776665544
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.3e-07 Score=86.46 Aligned_cols=134 Identities=10% Similarity=0.044 Sum_probs=71.1
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
++..+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|...+++.... -+.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 3455555555555566666666666655553 232 233444455555556666666655555542 22233444455
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
..++.+.|++++|..+|+++....|+ ..++..+..++...|+.++|...|+++++...+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 55555556666666666655544332 455555555555566666666666665554433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.3e-07 Score=72.72 Aligned_cols=116 Identities=8% Similarity=0.029 Sum_probs=50.4
Q ss_pred CChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH-HhcCC--hhH
Q 012879 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY-AKCGC--IFS 261 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~ 261 (454)
++.++++..+++..+ ..+.|...|..+...+...|+++.|...+++..+. .|.+..++..+..++ ...|+ .++
T Consensus 53 ~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 53 QTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred hhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 344444444444444 22333444444444444444444444444444443 233444444444432 33333 244
Q ss_pred HHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 262 ASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 262 a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
|.+++++..+..| +..++..+...+.+.|++++|+..|+++.+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~ 172 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLD 172 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444433 333444444444444444444444444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.2e-06 Score=83.00 Aligned_cols=240 Identities=11% Similarity=0.002 Sum_probs=146.2
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCc-chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHH
Q 012879 139 NLVTWNVMITGLVKWGELEFARSLFEEMPC--RNV-VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (454)
+...+..|+..+...+++++|.++.+...+ |+. ..|-.+...+...++.+++..+ .+. .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l----------------~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI----------------D 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh----------------h
Confidence 445677777777777777777777775443 332 3344444455666665555444 222 2
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhH
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKE 294 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 294 (454)
......++..+..++..+... +.+..++..+..+|-+.|+.++|..+++++.+..| |+.+.|.+...|... +.++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~---~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY---GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh---hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHH
Confidence 222233343344444444443 22555777788888888888888888888877765 677778888777777 7888
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
|.+++.+.... +...+++..+.++|..+... .+.+...+..+.+.....-..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~~~----------- 219 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHREF----------- 219 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhhcc-----------
Confidence 88777766543 44455677777777777653 222222222222222111001
Q ss_pred CCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCc
Q 012879 375 SEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGD 432 (454)
Q Consensus 375 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (454)
.--+.++..+-..|...+++++++.+++.+++..|.+..+...++.+|. +++..
T Consensus 220 --~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~ 273 (906)
T PRK14720 220 --TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKD 273 (906)
T ss_pred --chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccC
Confidence 0123445556667777888888888888888888888888888888876 44444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.1e-05 Score=80.23 Aligned_cols=370 Identities=10% Similarity=-0.027 Sum_probs=235.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchh
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV 111 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 111 (454)
..+......+...|++.+|........ .. + .-..............|+++.+..+++.+.......++..
T Consensus 342 ~lh~raa~~~~~~g~~~~Al~~a~~a~------d~--~--~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l 411 (903)
T PRK04841 342 ELHRAAAEAWLAQGFPSEAIHHALAAG------DA--Q--LLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRL 411 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHCC------CH--H--HHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcch
Confidence 455666777888999998887665553 11 0 0111222233345567888877777766532222233444
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC----CC---c---h--hHHHHHHHHHhcCCHHHHHHHHhhCCC----CCc----
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPE----RN---L---V--TWNVMITGLVKWGELEFARSLFEEMPC----RNV---- 171 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~----~~---~---~--~~~~ll~~~~~~~~~~~A~~~~~~~~~----~~~---- 171 (454)
.......+...|+++++...++.... .+ . . ....+...+...|++++|...+++..+ .+.
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 491 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRI 491 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHH
Confidence 44555666788999999888876532 11 1 1 112223445688999999999887542 121
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccC----CCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCC--Cc
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEY----TEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFT--AF 241 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~ 241 (454)
...+.+...+...|++++|...+++...... ..+...++..+...+...|+++.|...+++.... +.. +.
T Consensus 492 ~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 571 (903)
T PRK04841 492 VATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPM 571 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccH
Confidence 2345566677889999999999988865311 1111234556677788999999999988876653 211 11
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhc----CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVE----RK--NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKPNR 311 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~ 311 (454)
....+..+...+...|++++|...+.+.... .+ ....+..+...+...|++++|.+.+++.... +..+..
T Consensus 572 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~ 651 (903)
T PRK04841 572 HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDW 651 (903)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhH
Confidence 2334556677788889999999999887553 12 1233444566778899999999999887542 111111
Q ss_pred HH-H-HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CC--c
Q 012879 312 VT-F-LSVLNACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-----IT--D 379 (454)
Q Consensus 312 ~~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p--~ 379 (454)
.. . ...+..+...|+.+.|..++...... ..... ...+..+..++...|+.++|...+++.... .+ .
T Consensus 652 ~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~ 730 (903)
T PRK04841 652 IANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL 730 (903)
T ss_pred hhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence 01 0 11223445578999999887775432 11111 111345677888999999999999887654 11 2
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 380 VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
..+...+..++...|+.++|.+.+.++++....
T Consensus 731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 731 NRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 345666778889999999999999999988765
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-06 Score=69.83 Aligned_cols=249 Identities=13% Similarity=0.040 Sum_probs=125.6
Q ss_pred HHHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 149 GLVKWGELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
-+.-.|++..++..-..... .++..-..+.++|...|++...+.-. .. +-.|....+..+.......+..+.-
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~--~~~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE--GKATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc--ccCChHHHHHHHHHHhhCcchhHHH
Confidence 34445666666655544332 23334444556666666655443322 11 2234444444444444444443333
Q ss_pred H-HHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 227 Q-LIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 227 ~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
. .+.+.+.... ...+......-...|+..|++++|++..+.. .+......=+..+.+..+.+-|.+.+++|.+-
T Consensus 92 ~~~l~E~~a~~~-~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i 166 (299)
T KOG3081|consen 92 LASLYELVADST-DGSNLIDLLLAAIIYMHDGDFDEALKALHLG----ENLEAAALNVQILLKMHRFDLAEKELKKMQQI 166 (299)
T ss_pred HHHHHHHHHhhc-cchhHHHHHHhhHHhhcCCChHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3 3333333332 1112233333345566667777777666652 23333333344455566666677666666653
Q ss_pred CCCCcHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcH
Q 012879 306 GLKPNRVTFLSVLNACSH----GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDV 380 (454)
Q Consensus 306 ~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 380 (454)
-+..|.+.|..++.+ .+....|.-+|++|.+ +.+|+..+.+...-++...|++++|..++++...+ ..++
T Consensus 167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP 241 (299)
T ss_pred ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH
Confidence 244555555555432 2346666666666654 35566666666666666666666666666666665 3344
Q ss_pred hHHHHHHHHHHcCCChh-HHHHHHHHHHHhhcC
Q 012879 381 VVWRTLLGACSFHGNVE-MGERVTRKILEMERG 412 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~ 412 (454)
.+...++.+-...|... -..+.+..+....|.
T Consensus 242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~ 274 (299)
T KOG3081|consen 242 ETLANLIVLALHLGKDAEVTERNLSQLKLSHPE 274 (299)
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence 55544554444444433 334444444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.7e-07 Score=71.46 Aligned_cols=124 Identities=9% Similarity=-0.103 Sum_probs=91.7
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 297 ENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.++++..+. .|+. +..+...+...|++++|...|+..... -+.+...+..+..++.+.|++++|...|++....
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445555543 3443 444566677888888888888888753 2345777788888888888888888888888776
Q ss_pred -CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 377 -ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 377 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
+.+...+..+..++...|++++|+..++++++..|+++..+...+.+...
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM 138 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 34667888888888888888888888888888888888777766665543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.6e-06 Score=81.82 Aligned_cols=377 Identities=13% Similarity=0.037 Sum_probs=209.8
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChh
Q 012879 47 PQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLK 126 (454)
Q Consensus 47 ~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 126 (454)
...|+..|-+.. +..+. =...|..|...|...-+...|.+.|....+.+ ..+...+..+.+.|++..+++
T Consensus 474 ~~~al~ali~al---rld~~------~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we 543 (1238)
T KOG1127|consen 474 SALALHALIRAL---RLDVS------LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWE 543 (1238)
T ss_pred HHHHHHHHHHHH---hcccc------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHH
Confidence 566666665555 44444 23478888888887778888888888887765 456777888888899999999
Q ss_pred HHHHHHhhCCCCC-----chhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 012879 127 DSSKLFDEMPERN-----LVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMV 198 (454)
Q Consensus 127 ~a~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 198 (454)
.|..+.-...+.+ ...|...--.|.+.++...|..-|+...+ .|...|..++.+|...|++..|+++|.+..
T Consensus 544 ~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 544 EAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred HHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 8888844433321 12333444456778888888888887665 345677788889999999999999998876
Q ss_pred HccCCCCChhh-HHhHHHHHHccCchhHHHHHHHhhhhcCCC-----CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 199 ACEYTEPSEIT-ILAVLPAIWQNGDVKSCQLIHGYGEKRGFT-----AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 199 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.. .|+... ---.....+..|.+.++...+..+....-. ..-..++..+...+.-.|-..+|..++++..+.
T Consensus 624 ~L---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 624 LL---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred hc---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 53 444322 222223446778888888877776653110 001122222222222233333344444332221
Q ss_pred -------C--CChhhHHHHHHHHHh---cC-Ch--hHHHHHH-HHHHhCCCCC--------------------cHHHHHH
Q 012879 273 -------R--KNLVSWTSIISGFAM---HG-MG--KEAVENF-GRMQKVGLKP--------------------NRVTFLS 316 (454)
Q Consensus 273 -------~--~~~~~~~~l~~~~~~---~g-~~--~~A~~~~-~~m~~~~~~p--------------------~~~~~~~ 316 (454)
. .+...|-.+-++|.- .. +. .....++ .+....+.-| +..+|..
T Consensus 701 f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyN 780 (1238)
T KOG1127|consen 701 FIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYN 780 (1238)
T ss_pred HHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHH
Confidence 1 122222222222110 00 00 0001111 1111111111 1222222
Q ss_pred HHHHHhc----CC----ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHH
Q 012879 317 VLNACSH----GG----LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLL 387 (454)
Q Consensus 317 l~~~~~~----~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 387 (454)
+...|.+ .| +...|+..+...++. -..+..+|+.| ......|++.-|...|-+.... +....+|..+.
T Consensus 781 LGinylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~sep~~~~~W~Nlg 857 (1238)
T KOG1127|consen 781 LGINYLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSEPTCHCQWLNLG 857 (1238)
T ss_pred HhHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHH-HHhhccchhhhhhhhhhhhhhccccchhheeccc
Confidence 2222211 11 122344444444432 11223333333 3334456666666655544443 33456677777
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
..+.+..|++-|...|.+.+...|.+...|...+......|+.-++..+|..
T Consensus 858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred eeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 7777888888888888888888888888887777777778877777777655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.8e-06 Score=66.96 Aligned_cols=106 Identities=8% Similarity=-0.019 Sum_probs=49.4
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCCh
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNV 396 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 396 (454)
.+..+++-|.+.++.|.+- .+..+.+.|..++.+ .+.+.+|.-+|+++.++ .|++.+.+....++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 3444455555555555431 223333333333332 23344555555555553 44555555555555555555
Q ss_pred hHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 397 EMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
++|..++++++...+.++.+...++.+-...|+..
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~ 258 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLGKDA 258 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCCh
Confidence 55555555555555555444444444444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-07 Score=72.84 Aligned_cols=111 Identities=10% Similarity=-0.075 Sum_probs=95.7
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..+++...+ +.|+ .+..+...+...|++++|...|+..... +.+...|..+..++...|++++|+..|+++++.
T Consensus 13 ~~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 445666654 3454 3556778889999999999999998887 447788999999999999999999999999999
Q ss_pred hcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 410 ERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
.|.++..+..++.++...|++++|...+++..+....
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYA 124 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999998876543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-08 Score=55.59 Aligned_cols=34 Identities=29% Similarity=0.508 Sum_probs=26.1
Q ss_pred cCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 103 VGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 103 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
.|+.||..+|+.+|++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3677888888888888888888888888877763
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.3e-05 Score=70.00 Aligned_cols=195 Identities=12% Similarity=0.064 Sum_probs=127.0
Q ss_pred ChhHHHHHHhhCCC------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHHHHHHHhcCChHHHHHHHHH
Q 012879 124 FLKDSSKLFDEMPE------RNLVTWNVMITGLVKWGELEFARSLFEEMPC-RNVVSWTGIIDGYTRMNRSNEALALFRK 196 (454)
Q Consensus 124 ~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 196 (454)
++.++...-+.++. |+...+...+.+......-..+...+....+ .......-..-.+...|++++|+..+..
T Consensus 252 RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~ 331 (484)
T COG4783 252 RIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRGGLAAQYGRALQTYLAGQYDEALKLLQP 331 (484)
T ss_pred HHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCccchHHHHHHHHHHHHhcccchHHHHHHH
Confidence 44455555555553 3333444444444333332333333222222 2222333344455667888888888888
Q ss_pred HHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-C
Q 012879 197 MVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-N 275 (454)
Q Consensus 197 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~ 275 (454)
+.+ ..|-|..........+.+.++.++|.+.++.+... .|........+.++|.+.|++.+|+++++......| |
T Consensus 332 L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d 407 (484)
T COG4783 332 LIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED 407 (484)
T ss_pred HHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC
Confidence 877 34444555556667778888888888888888886 565577777888888888888888888888877755 7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+..|..|.++|...|+..++..-..+ .+...|++++|...+....+.
T Consensus 408 p~~w~~LAqay~~~g~~~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 408 PNGWDLLAQAYAELGNRAEALLARAE------------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred chHHHHHHHHHHHhCchHHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHh
Confidence 78888888888888887777655433 345567888888888777764
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.5e-06 Score=67.06 Aligned_cols=161 Identities=13% Similarity=0.080 Sum_probs=116.9
Q ss_pred HhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc
Q 012879 211 LAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMH 289 (454)
Q Consensus 211 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 289 (454)
..+-..+...|+-+....+....... .|.+......++....+.|++..|...|.+.....| |...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHc
Confidence 55666677777777777666665443 344666777788888888888888888888877644 777888888888888
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 012879 290 GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
|+.++|..-|.+..+.- .-+...++.+.-.+.-.|+.+.|..++...... -.-|..+-..+.......|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 88888888888877752 224556677777777778888888888887764 233566667777778888888888887
Q ss_pred HhcCCCC
Q 012879 370 ALGIPSE 376 (454)
Q Consensus 370 ~~~~~~~ 376 (454)
...-...
T Consensus 225 ~~~e~~~ 231 (257)
T COG5010 225 AVQELLS 231 (257)
T ss_pred ccccccc
Confidence 7655443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-05 Score=77.54 Aligned_cols=398 Identities=12% Similarity=-0.021 Sum_probs=242.9
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCC-CCCc
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGF-QSHV 109 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 109 (454)
...|..|..-|+...+...|.+.|+... +.+.. +......+...++...+++.|..+.-..-+... ..-.
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAF---eLDat------daeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k 562 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAF---ELDAT------DAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK 562 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCch------hhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence 3578888888888888899999999998 66666 888999999999999999999998433322210 0111
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCCCC---CchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcc-hHHH--HHHHHHh
Q 012879 110 YVNTALVNMYVSLGFLKDSSKLFDEMPER---NLVTWNVMITGLVKWGELEFARSLFEEMPCRNVV-SWTG--IIDGYTR 183 (454)
Q Consensus 110 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~--l~~~~~~ 183 (454)
.-|....-.|...++..+|..-|+...+. |...|..+..+|.++|.+..|.+.|.+...-++. +|.. ..-.-+.
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd 642 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD 642 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH
Confidence 22333444577888999999999988763 5567888999999999999999999887653332 2322 2334567
Q ss_pred cCChHHHHHHHHHHHHcc-----CCCCChhhHHhHHHHHHccCchhHHHHHHHhh-------hhcCCCCchHHHHHHHHH
Q 012879 184 MNRSNEALALFRKMVACE-----YTEPSEITILAVLPAIWQNGDVKSCQLIHGYG-------EKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~~l~~ 251 (454)
.|.+.+|+..+....... +..--..++..+...+...|=..++..+++.. ..... ..+...|..+.+
T Consensus 643 ~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~-~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSL-QSDRLQWIVASD 721 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhh-hhhHHHHHHHhH
Confidence 899999999888776521 22222334444444444344333333333332 22211 112222222222
Q ss_pred HHH-----------------------hcCCh---h---HHHHHHHHhhhcCCChhhHHHHHHHHHh----cC----ChhH
Q 012879 252 TYA-----------------------KCGCI---F---SASKLFEDISVERKNLVSWTSIISGFAM----HG----MGKE 294 (454)
Q Consensus 252 ~~~-----------------------~~g~~---~---~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g----~~~~ 294 (454)
++. +.+.. + -+.+.+-.-.+.-.+..+|..++..|.+ .| +...
T Consensus 722 ac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~ 801 (1238)
T KOG1127|consen 722 ACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACT 801 (1238)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHH
Confidence 111 11111 0 0111111111111133445555544433 22 3346
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
|+..+.+.++.. ..+..+|+.|--. ...|++.-+..-|-.-.. ..+....+|..+.-.+.+..+++-|...|....
T Consensus 802 Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q 877 (1238)
T KOG1127|consen 802 AIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ 877 (1238)
T ss_pred HHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhh
Confidence 777777776642 3355566655544 666777777776666554 334456778888888899999999999999998
Q ss_pred CCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHH--HHhhcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 375 SEIT-DVVVWRTLLGACSFHGNVEMGERVTRKI--LEMERGYG---GDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 375 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
...| +...|-.........|+.-++..+|..- ...+.+-. ..|..........|+.++-+...+++..
T Consensus 878 SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 878 SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 8844 5566765555566789999999999883 33333322 2334455566777887776666665543
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-08 Score=54.06 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=19.2
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
|+.||..+|++||++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55566666666666666666666666666555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=79.15 Aligned_cols=218 Identities=11% Similarity=0.037 Sum_probs=136.7
Q ss_pred hhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCC
Q 012879 28 LHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
+.+...+..|+..+...+++++|.++.+... ...+. ....|-.+...+.+.++.+.+.-+ .+... ++.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l---~~~P~------~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~-~~~ 95 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHL---KEHKK------SISALYISGILSLSRRPLNDSNLL--NLIDS-FSQ 95 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCc------ceehHHHHHHHHHhhcchhhhhhh--hhhhh-ccc
Confidence 4777899999999999999999999999776 44433 444444444466666665555544 22221 111
Q ss_pred C-------------------chhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhh
Q 012879 108 H-------------------VYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEE 165 (454)
Q Consensus 108 ~-------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~ 165 (454)
+ ...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... ++++|.+++.+
T Consensus 96 ~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~K 174 (906)
T PRK14720 96 NLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKK 174 (906)
T ss_pred ccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHH
Confidence 2 24555566666677777777777777664 3455666666666666 77777666654
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHH
Q 012879 166 MPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRV 245 (454)
Q Consensus 166 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 245 (454)
. +..+...+++.++.+++.++... .+.+. +.-..+.+.+..+-....-..+
T Consensus 175 A-----------V~~~i~~kq~~~~~e~W~k~~~~--~~~d~----------------d~f~~i~~ki~~~~~~~~~~~~ 225 (906)
T PRK14720 175 A-----------IYRFIKKKQYVGIEEIWSKLVHY--NSDDF----------------DFFLRIERKVLGHREFTRLVGL 225 (906)
T ss_pred H-----------HHHHHhhhcchHHHHHHHHHHhc--Ccccc----------------hHHHHHHHHHHhhhccchhHHH
Confidence 3 23355556666677766666653 22222 2223333333332111223455
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFA 287 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~ 287 (454)
+..+-..|...++++++..+++.+.+..| |.....-++.+|.
T Consensus 226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 226 LEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 66677788888899999999999888765 6667777777776
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.6e-05 Score=70.89 Aligned_cols=154 Identities=15% Similarity=0.090 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHh
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN-RVTFLSVLNACS 322 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 322 (454)
......-.+...|++++|+..++.+....| |+..+....+.+.+.|+.++|.+.++++... .|+ ......+..++.
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all 385 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALL 385 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHH
Confidence 333444456667888999999988888877 4455556667888899999999999988875 455 444556678888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
+.|++.+|+.+++.... ..+.|+..|..|.++|...|+..+|..... ..|...|+++.|+..
T Consensus 386 ~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A----------------E~~~~~G~~~~A~~~ 447 (484)
T COG4783 386 KGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA----------------EGYALAGRLEQAIIF 447 (484)
T ss_pred hcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH----------------HHHHhCCCHHHHHHH
Confidence 89999999999888876 456678888899999999988877765443 456678899999998
Q ss_pred HHHHHHhhcCCCCcHH
Q 012879 403 TRKILEMERGYGGDYV 418 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~ 418 (454)
+..+.+....+...|.
T Consensus 448 l~~A~~~~~~~~~~~a 463 (484)
T COG4783 448 LMRASQQVKLGFPDWA 463 (484)
T ss_pred HHHHHHhccCCcHHHH
Confidence 8888877655444433
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00094 Score=64.34 Aligned_cols=388 Identities=14% Similarity=0.077 Sum_probs=220.3
Q ss_pred HccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHH--HhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHH
Q 012879 42 SLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRT--CATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMY 119 (454)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 119 (454)
...+++.+|+.....+. ...+. . .|..++.+ +.+.|+.++|..+++.....+.. |..|...+-.+|
T Consensus 20 ld~~qfkkal~~~~kll---kk~Pn-------~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y 87 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLL---KKHPN-------A-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVY 87 (932)
T ss_pred hhhHHHHHHHHHHHHHH---HHCCC-------c-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHH
Confidence 45678888988888887 44322 1 24444444 35788899999888877665533 778888899999
Q ss_pred HhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHH----HHHHHHhhCCCCCcchHHHHHHHHHhc-CC------
Q 012879 120 VSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELE----FARSLFEEMPCRNVVSWTGIIDGYTRM-NR------ 186 (454)
Q Consensus 120 ~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~------ 186 (454)
...|+.++|..++++..+ |+..-...+..+|++.+++. .|.++++...+ +...+-++++..... ..
T Consensus 88 ~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk-~~yyfWsV~Slilqs~~~~~~~~~ 166 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPK-RAYYFWSVISLILQSIFSENELLD 166 (932)
T ss_pred HHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc-ccchHHHHHHHHHHhccCCccccc
Confidence 999999999999999886 55555556667777777654 46666665543 344444445444332 11
Q ss_pred ---hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 187 ---SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 187 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
..-|.+.++.+.+.+|..-+..-...-+..+...|++++|.+++..-......+.+...-+.-+..+...+++.+..
T Consensus 167 ~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 167 PILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred chhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 12355566666665443333344444455666778888888888443333334445566667778888888888888
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHH----------------hcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHhcCCC
Q 012879 264 KLFEDISVERKNLVSWTSIISGFA----------------MHGMGKEAVENFGRMQKVGL-KPNRVTFLSVLNACSHGGL 326 (454)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~----------------~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~~ 326 (454)
++-.++....+|. |.+.++.+. ..+..+...+...+....+. .|-...+- +..-+-.-|+
T Consensus 247 ~l~~~Ll~k~~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~le-l~kr~~~~gd 323 (932)
T KOG2053|consen 247 ELSSRLLEKGNDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLE-LDKRYKLIGD 323 (932)
T ss_pred HHHHHHHHhCCcc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHH-HHHHhcccCC
Confidence 8888887776653 333222111 11122222222222222110 11111111 1111123344
Q ss_pred hHHHHHHHHHHHHhcCCCC-------------ChhHHHHHHHHHH------------------------hcCCh-----H
Q 012879 327 VEEGLNFFDKMVEECEVLP-------------DIKHYGCLIDMLG------------------------RAGRL-----E 364 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~------------------------~~g~~-----~ 364 (454)
.+++...|-+-. |.+| +......++..+. -.|.+ +
T Consensus 324 ~ee~~~~y~~kf---g~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad 400 (932)
T KOG2053|consen 324 SEEMLSYYFKKF---GDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD 400 (932)
T ss_pred hHHHHHHHHHHh---CCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence 444332222111 1111 0001111222221 12211 1
Q ss_pred HHHHH-------HhcCCCC----CCcH---------hHHHHHHHHHHcCCChh---HHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 365 QAEKT-------ALGIPSE----ITDV---------VVWRTLLGACSFHGNVE---MGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 365 ~A~~~-------~~~~~~~----~p~~---------~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
.-..+ |+.-.+. -|+. -+-+.|++.+.+.++.. +|+-+++..+...|.+...-..++
T Consensus 401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLi 480 (932)
T KOG2053|consen 401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLI 480 (932)
T ss_pred HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHH
Confidence 11111 1211111 1221 23467788888887754 677788888887777777777899
Q ss_pred HHHHhcCCcCcHHHHHHHHhhcccccC
Q 012879 422 NILAGVGRFGDAERLRRVMDERNAFKV 448 (454)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (454)
.+|.-.|-+..|.++++.+.-++|+-+
T Consensus 481 riY~~lGa~p~a~~~y~tLdIK~IQ~D 507 (932)
T KOG2053|consen 481 RIYSYLGAFPDAYELYKTLDIKNIQTD 507 (932)
T ss_pred HHHHHhcCChhHHHHHHhcchHHhhhc
Confidence 999999999999999998877766544
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.55 E-value=3.7e-05 Score=62.64 Aligned_cols=170 Identities=12% Similarity=0.066 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS 322 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 322 (454)
.+|..++-+....|+.+.|...++++...-|.. .+-..-...+-..|++++|+++++.+.+.. +-|..++..=+...-
T Consensus 53 ~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk 131 (289)
T KOG3060|consen 53 TLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK 131 (289)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence 345555556666777777777777766654422 222222223344677777777777777664 334455554444555
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcC---CChhH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFH---GNVEM 398 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~ 398 (454)
..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++.-..| ++..+..+...+... .+.+.
T Consensus 132 a~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 132 AQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 56666677777777766 4666777888888888888888888877777766534 444555555554433 35667
Q ss_pred HHHHHHHHHHhhcCCCCc
Q 012879 399 GERVTRKILEMERGYGGD 416 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~ 416 (454)
|.+++.++++..|.+...
T Consensus 210 arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 210 ARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHHhChHhHHH
Confidence 777888887777754433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-05 Score=76.83 Aligned_cols=144 Identities=12% Similarity=0.054 Sum_probs=103.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
++..+-.|.......|.+++|..+++...+. .|-+......+...+.+.+++++|...+++.... .|.+......+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~ 160 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLE 160 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHH
Confidence 4667777777788888888888888888763 3344566677777778888888888888877776 46577777778
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 318 (454)
..++.+.|++++|.++|+++....| +..++..+..++...|+.++|...|++..+. ..|....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8888888888888888888776545 3567777777777888888888888877664 234445554444
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.45 E-value=7e-06 Score=73.79 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 145 VMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 145 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
.++..+...++++.|+++|+++.+.++.....+++.+...++..+|++++.+..+ ..+.+...+..-...+.+.++.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHH
Confidence 3444455566667777777766665555555666666666666666666666665 23344445555555566666666
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
.|..+.+++.+. .|.+..+|..|..+|...|+++.|+..++.+.-
T Consensus 252 lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 252 LALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 666666666665 454555666666666666666666666665543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=66.93 Aligned_cols=114 Identities=10% Similarity=-0.014 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 298 NFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 298 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+++.... .| +......+...+...|++++|...++.+... .+.+...+..+..++.+.|++++|..+++.....
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45555554 33 3344556667778888999999998888764 2346677788888888889999999888887666
Q ss_pred -CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 377 -ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 377 -~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
+.+...+..+...+...|++++|...++++++..|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 345677777888888889999999999988888887654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.9e-06 Score=62.92 Aligned_cols=114 Identities=16% Similarity=0.057 Sum_probs=63.9
Q ss_pred HHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCC
Q 012879 266 FEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVL 344 (454)
Q Consensus 266 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 344 (454)
|+++....| +......+...+...|++++|.+.++.+.+.+ +.+...+..+...+...|++++|..+++...+. .+
T Consensus 6 ~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p 82 (135)
T TIGR02552 6 LKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL--DP 82 (135)
T ss_pred HHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CC
Confidence 344444434 33344455555666666666666666665543 224455555566666666666666666666542 23
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVV 382 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 382 (454)
.+...+..+..+|...|++++|...|+......|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34455555566666666666666666666555444333
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.7e-06 Score=75.54 Aligned_cols=122 Identities=13% Similarity=0.047 Sum_probs=77.6
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFH 393 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 393 (454)
..++..+...++++.|..+++++.+. .|+ ....++..+...++-.+|.+++++.....| +...+......|.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 34445555556666666666666654 233 333455666666666666666666655433 444555555666677
Q ss_pred CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 394 GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 394 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
++++.|+++.+++.+..|.+-.+|..|+.+|.+.|+++.|+-.++.+.
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 777777777777777777777777777777777777777777776654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.8e-05 Score=59.75 Aligned_cols=117 Identities=17% Similarity=0.117 Sum_probs=58.4
Q ss_pred cCChhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChH
Q 012879 289 HGMGKEAVENFGRMQKVGLKP--NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD--IKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 364 (454)
.++...+...++.+.+....- .....-.+...+...|++++|...|+.+... ...|. ......+...+...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 455555555555555542111 0112222334555566666666666666554 21111 112233455555666666
Q ss_pred HHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 365 QAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 365 ~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
+|+..++...........+....+.|...|++++|...|+++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 666666554433334445555566666666666666666553
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.9e-05 Score=61.52 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=138.0
Q ss_pred CChhHHHHHHHHhhhc------CCChh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH-HHHHhcCCChH
Q 012879 257 GCIFSASKLFEDISVE------RKNLV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV-LNACSHGGLVE 328 (454)
Q Consensus 257 g~~~~a~~~~~~~~~~------~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~ 328 (454)
.+.++..+++.++... +++.. .|.-++-+....|+.+.|...++++...- |.+.-...+ ..-+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4556666666655443 23333 34455566777899999999999988762 443322222 22244569999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
+|+++++.+... -+.|..++..=+...-..|+.-+|++-+.+..+. ..|...|.-+...|...|++++|.-.+++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 999999999985 3556677777677777788888999888887777 6689999999999999999999999999999
Q ss_pred HhhcCCCCcHHHHHHHHHhcC---CcCcHHHHHHHHhhccc
Q 012879 408 EMERGYGGDYVLMYNILAGVG---RFGDAERLRRVMDERNA 445 (454)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~ 445 (454)
-..|.++-.+..+++.+.-.| +.+-|.+++.+..+...
T Consensus 182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999998888888888876554 55567777877766544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00069 Score=65.20 Aligned_cols=225 Identities=13% Similarity=0.078 Sum_probs=123.2
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHH--HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLP--AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
...+++.+|++...+..+. .|+. .|...+. ...+.|+.++|..+++.....+. .|..+...+-.+|...|+.
T Consensus 20 ld~~qfkkal~~~~kllkk---~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK---HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH---CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhh
Confidence 3456667777766666653 2332 1222333 33566777777766666655532 2666777777777777777
Q ss_pred hHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC----------ChHH
Q 012879 260 FSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG----------LVEE 329 (454)
Q Consensus 260 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----------~~~~ 329 (454)
++|..+|++..+..|+......+..+|.+.+++.+-.+.--+|-+. .+-+.+.|-+++....+.- -..-
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 7777777777776666555666666666666555444333333332 2334445555554443221 1123
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc-CCCC--CCcHhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 330 GLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG-IPSE--ITDVVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
|.+.++.+.+..|---+..-.......+...|.+++|.+++.. ..+. .-+...-+.-+..+...+++.+..++..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 5555555555422111111112223344566778888777732 2222 113333344556666777788888888888
Q ss_pred HHhhcCC
Q 012879 407 LEMERGY 413 (454)
Q Consensus 407 ~~~~~~~ 413 (454)
++.++++
T Consensus 253 l~k~~Dd 259 (932)
T KOG2053|consen 253 LEKGNDD 259 (932)
T ss_pred HHhCCcc
Confidence 7777776
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.26 E-value=7.3e-05 Score=58.16 Aligned_cols=86 Identities=13% Similarity=0.025 Sum_probs=33.7
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChh
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTA-FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGK 293 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 293 (454)
..+...|++++|...|+.+......+ ........|..++...|++++|+..++...........+......|...|+.+
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~ 135 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYD 135 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHH
Confidence 34444444444444444444432111 00112223344444444444444444433222122233333344444444444
Q ss_pred HHHHHHH
Q 012879 294 EAVENFG 300 (454)
Q Consensus 294 ~A~~~~~ 300 (454)
+|...|+
T Consensus 136 ~A~~~y~ 142 (145)
T PF09976_consen 136 EARAAYQ 142 (145)
T ss_pred HHHHHHH
Confidence 4444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.7e-06 Score=62.69 Aligned_cols=91 Identities=7% Similarity=-0.090 Sum_probs=58.1
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
+..-+...|++++|..+|+-.....| +..-|-.|.-++-..|++++|+..+..+...+|+++.++..++.++...|+.+
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~ 120 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC 120 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence 34445566666666666666555423 34455566666666677777777777777777777767777777777777777
Q ss_pred cHHHHHHHHhhc
Q 012879 432 DAERLRRVMDER 443 (454)
Q Consensus 432 ~a~~~~~~~~~~ 443 (454)
.|.+.|+..+..
T Consensus 121 ~A~~aF~~Ai~~ 132 (157)
T PRK15363 121 YAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHH
Confidence 777766665543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.20 E-value=3e-06 Score=47.48 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=25.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
+||+++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 577777788888888888888888777777776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.004 Score=55.52 Aligned_cols=130 Identities=17% Similarity=0.077 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHH-HHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECE-VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVW-RTLLGA 389 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~-~~l~~~ 389 (454)
..|...+++..+....+.|..+|-++.+. + ..+++.++++++..++ .|+...|..+|+--....||...| ...+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45667777777888899999999999988 6 6788999999998665 688889999999877776776665 445666
Q ss_pred HHcCCChhHHHHHHHHHHHhhcCC--CCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 390 CSFHGNVEMGERVTRKILEMERGY--GGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
+...++-+.|..+|+..++.-..+ .+.|..++.--...|+...+..+-+.|.+.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 778899999999999877654443 567888888888899998888777777654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=59.81 Aligned_cols=103 Identities=11% Similarity=0.081 Sum_probs=60.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLL 387 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 387 (454)
++..+...+.+.|++++|.+.|..+....+-.+ ....+..+..++.+.|++++|...++.+....|+ ..++..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344555556666777777777777665411111 1234455666666677777777766666554232 34455566
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
.++...|+.++|...++++++..|.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 6666666777777777776666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.4e-06 Score=46.91 Aligned_cols=33 Identities=24% Similarity=0.487 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP 309 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 309 (454)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.8e-05 Score=65.89 Aligned_cols=157 Identities=11% Similarity=0.005 Sum_probs=107.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH--HhcCCChHHHHHHHHHHHHhcCCCCChhHHH----------
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA--CSHGGLVEEGLNFFDKMVEECEVLPDIKHYG---------- 351 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------- 351 (454)
.++.-.|++++|...--..++.. + ...+...+++ +-..++.+.+...|++... +.|+-..-.
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHH
Confidence 45566788888877776665532 1 1223333332 3345677788888877763 344432211
Q ss_pred ---HHHHHHHhcCChHHHHHHHhcCCCC-----CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 352 ---CLIDMLGRAGRLEQAEKTALGIPSE-----ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 352 ---~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
.=.+-..+.|++.+|.+.|.+.+.. .|+...|........+.|+.++|+.-.+++++.++.....+..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 1122345778888999988888777 33455666667777888999999999999988888888888888888
Q ss_pred HHhcCCcCcHHHHHHHHhhcccc
Q 012879 424 LAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
+.-.++|++|.+-+++..+....
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhccc
Confidence 88889999998888887665444
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.1e-06 Score=58.24 Aligned_cols=94 Identities=15% Similarity=0.039 Sum_probs=61.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+..+...+...|++++|...++++....| +...+..+...+...|++++|.+.+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 34455556666777777777766655422 33555666666666777777777777777766666666667777777777
Q ss_pred CcCcHHHHHHHHhhc
Q 012879 429 RFGDAERLRRVMDER 443 (454)
Q Consensus 429 ~~~~a~~~~~~~~~~ 443 (454)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 777777777666543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.14 E-value=9e-07 Score=61.54 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=45.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHH
Q 012879 324 GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 324 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
.|+++.|+.+++.+.+.....++...+-.+..+|.+.|++++|.+++++ ... ..+......+..+|.+.|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4667777777777766522122334444466677777777777777766 222 22233444446666677777777776
Q ss_pred HHH
Q 012879 403 TRK 405 (454)
Q Consensus 403 ~~~ 405 (454)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 665
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0063 Score=55.58 Aligned_cols=412 Identities=8% Similarity=0.034 Sum_probs=247.1
Q ss_pred CCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc-cC
Q 012879 10 PNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT-LS 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~-~~ 88 (454)
+.+.++-.++++...-+ -++..|...|+.-.+..+++....+|.+-. ..- . +...|..-++--.+ .+
T Consensus 34 ~~~~~R~~YEq~~~~FP--~s~r~W~~yi~~El~skdfe~VEkLF~RCL---vkv----L---nlDLW~lYl~YVR~~~~ 101 (656)
T KOG1914|consen 34 PIDKVRETYEQLVNVFP--SSPRAWKLYIERELASKDFESVEKLFSRCL---VKV----L---NLDLWKLYLSYVRETKG 101 (656)
T ss_pred CHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHH----h---hHhHHHHHHHHHHHHcc
Confidence 34555666666655444 778899999999999999999999999986 222 2 55566666664332 23
Q ss_pred Ccch----HhHHHHHHH-HcCCCCC-chhHHHHHHHH---------HhCCChhHHHHHHhhCCC-C---------CchhH
Q 012879 89 HPNL----GTQLHAVIS-KVGFQSH-VYVNTALVNMY---------VSLGFLKDSSKLFDEMPE-R---------NLVTW 143 (454)
Q Consensus 89 ~~~~----a~~~~~~~~-~~~~~~~-~~~~~~l~~~~---------~~~g~~~~a~~~~~~~~~-~---------~~~~~ 143 (454)
+... ..+.|+... +.|+.+- ...|+..+..+ ....+++...+++.++.. | |-..|
T Consensus 102 ~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~f 181 (656)
T KOG1914|consen 102 KLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAF 181 (656)
T ss_pred CcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence 3332 233333333 3454332 33566655543 333467778888888764 2 22333
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHhhCCC---------CC---c---------chHHHHHHHHHhcC------C--h
Q 012879 144 NVMITGLV-------KWGELEFARSLFEEMPC---------RN---V---------VSWTGIIDGYTRMN------R--S 187 (454)
Q Consensus 144 ~~ll~~~~-------~~~~~~~A~~~~~~~~~---------~~---~---------~~~~~l~~~~~~~~------~--~ 187 (454)
..-|+... +...+..|.++.+++.. |. . ..|..+|.-=...+ . -
T Consensus 182 E~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~ 261 (656)
T KOG1914|consen 182 EQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLT 261 (656)
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHH
Confidence 33232221 33455666666665531 11 0 11333333221111 1 1
Q ss_pred HHHHHHHHHHHHccCCCCChhhHH-----hHHHHHHccCc-------hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh
Q 012879 188 NEALALFRKMVACEYTEPSEITIL-----AVLPAIWQNGD-------VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK 255 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (454)
....-.+++....-+..|+..... ...+.+...|+ .+++..+++.....-... +..+|..+.+.--.
T Consensus 262 ~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~-~~~Ly~~~a~~eE~ 340 (656)
T KOG1914|consen 262 RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKE-NKLLYFALADYEES 340 (656)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHH
Confidence 223344454444324444443211 11122333444 345556666655532211 44444444433222
Q ss_pred cC---ChhHHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHH
Q 012879 256 CG---CIFSASKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 256 ~g---~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~ 329 (454)
.- ..+.....++++.... .-..+|...+..-.+..-...|..+|.+..+.+..+ .....++++..+|. ++.+-
T Consensus 341 ~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~ 419 (656)
T KOG1914|consen 341 RYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKET 419 (656)
T ss_pred hcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhH
Confidence 22 2556666677666541 233468888888888888999999999999988777 77788888888875 78899
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCc--HhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 330 GLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITD--VVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
|.++|+.=.+.+| .++.--...++-+...|+-..|..+|++.... .|+ ...|..++.--...|+...+.++-++
T Consensus 420 AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR 497 (656)
T KOG1914|consen 420 AFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR 497 (656)
T ss_pred HHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 9999998877533 34445567788888999999999999998876 333 47899999999999999999999988
Q ss_pred HHHhhcC----CCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 406 ILEMERG----YGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 406 ~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
....-|. ....-..+.+-|.-.+.+.--..-+
T Consensus 498 ~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~el 533 (656)
T KOG1914|consen 498 RFTAFPADQEYEGNETALFVDRYGILDLYPCSLDEL 533 (656)
T ss_pred HHHhcchhhcCCCChHHHHHHHHhhcccccccHHHH
Confidence 8776662 1233345555555555554433333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.3e-05 Score=57.25 Aligned_cols=92 Identities=11% Similarity=-0.024 Sum_probs=42.4
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHHHHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYNIL 424 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~ 424 (454)
.++..+.+.|++++|.+.|+.+....|+ ...+..+..++.+.|+++.|...++++....|.+ +..+..++.++
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL 86 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence 3444444455555555555444433222 1233334444555555555555555555444442 22344444555
Q ss_pred HhcCCcCcHHHHHHHHhhc
Q 012879 425 AGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 425 ~~~g~~~~a~~~~~~~~~~ 443 (454)
.+.|++++|.+.++++.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHhCChHHHHHHHHHHHHH
Confidence 5555555555555554443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.9e-06 Score=73.15 Aligned_cols=109 Identities=8% Similarity=-0.041 Sum_probs=90.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
-...+...|++++|+..|+++.+. -+.+...|..+..+|.+.|++++|+..++++....| +...|..+..+|...|+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 345566789999999999999875 234577888889999999999999999999988744 57788899999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
+++|+..|+++++..|.+......+..+..+.
T Consensus 86 ~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 86 YQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999887766665554444
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=67.13 Aligned_cols=266 Identities=11% Similarity=-0.028 Sum_probs=163.6
Q ss_pred hHHHHHH--HHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHH--H--cCCC
Q 012879 33 LFNTLLH--FYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVIS--K--VGFQ 106 (454)
Q Consensus 33 ~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~ 106 (454)
.+..-+. -+|+.|+.+.-+.+|+... +.|.. .-+.-+.+|..|.++|--.+++++|+++...=+ . .|-+
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~---qvGTe--Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdk 91 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAAL---QVGTE--DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDK 91 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHH---Hhcch--HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcch
Confidence 4444443 5899999999999999999 66655 100123456777778888889999988765421 1 1111
Q ss_pred -CCchhHHHHHHHHHhCCChhHHHHHHhhCCC---------CCchhHHHHHHHHHhcCC--------------------H
Q 012879 107 -SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---------RNLVTWNVMITGLVKWGE--------------------L 156 (454)
Q Consensus 107 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~ll~~~~~~~~--------------------~ 156 (454)
-...+-..|.+.+-..|.+++|...-.+-.. .....+-.+...|...|+ +
T Consensus 92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al 171 (639)
T KOG1130|consen 92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSAL 171 (639)
T ss_pred hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHH
Confidence 1122333455566667777777765433221 122334445555554333 3
Q ss_pred HHHHHHHhhCCC---------CCcchHHHHHHHHHhcCChHHHHHHHHHHH----HccCCC-CChhhHHhHHHHHHccCc
Q 012879 157 EFARSLFEEMPC---------RNVVSWTGIIDGYTRMNRSNEALALFRKMV----ACEYTE-PSEITILAVLPAIWQNGD 222 (454)
Q Consensus 157 ~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~ 222 (454)
+.|.++|.+-.+ .-...|..|...|.-.|+++.|+..-+.-. +- |.. .....+..+..++.-.|+
T Consensus 172 ~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 172 ENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hhHHHHHHhhcccchhhhhhcc
Confidence 444444433211 122456667777777788888876654322 22 222 234567788888888888
Q ss_pred hhHHHHHHHhhh----hcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-------CCChhhHHHHHHHHHhcCC
Q 012879 223 VKSCQLIHGYGE----KRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-------RKNLVSWTSIISGFAMHGM 291 (454)
Q Consensus 223 ~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~ 291 (454)
++.|.+.|+... +.|-.......+.+|.+.|.-...+++|+.++.+-... .-....+-.|..+|...|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 888887776543 44444445667778888888888888888888764433 1244567778888888888
Q ss_pred hhHHHHHHHHHHh
Q 012879 292 GKEAVENFGRMQK 304 (454)
Q Consensus 292 ~~~A~~~~~~m~~ 304 (454)
.++|+.+.+.-++
T Consensus 331 h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 331 HRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877665443
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.1e-05 Score=45.10 Aligned_cols=34 Identities=38% Similarity=0.676 Sum_probs=28.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS 206 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 206 (454)
.+||.++.+|++.|++++|.++|++|.+. |+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~-g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLER-GIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCC
Confidence 36888888999999999999999988887 77776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0012 Score=58.11 Aligned_cols=54 Identities=4% Similarity=-0.103 Sum_probs=34.4
Q ss_pred HHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 82 RTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 82 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
..+.+..++..|+..+...++.. +-+..-|..-+..+...|++++|.--.+.-.
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~ 110 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSV 110 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhe
Confidence 33445556777777888777765 3345556666666777777777765554443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=8.3e-06 Score=54.19 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=56.9
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC-CcCcHHHHHHHHhhcc
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG-RFGDAERLRRVMDERN 444 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 444 (454)
+..+|..+...+...|++++|+..|+++++.+|.++..+..++.++.+.| ++++|.+.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45678888888999999999999999999999988888999999999998 7899999988877643
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.7e-06 Score=45.00 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCC
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHS 66 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 66 (454)
+.+||.++++|++.|+++.|.++|+.|. +.|++
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~---~~gv~ 33 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMK---EQGVK 33 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCC
Confidence 3689999999999999999999999999 88887
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.99 E-value=5.3e-05 Score=63.53 Aligned_cols=107 Identities=14% Similarity=0.012 Sum_probs=62.4
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 399 (454)
+.+.+++++|+..|.+.++. .+-|...|..-..+|.+.|.++.|++-.+......| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 34556666666666666642 222344455556666666666666666666665533 245666666666666666666
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCC
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGR 429 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (454)
++.|+++++.+|.+......|-.+-.+.+.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHHHHHHhcC
Confidence 666666666666666444444444444333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00052 Score=52.56 Aligned_cols=103 Identities=12% Similarity=0.134 Sum_probs=73.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
+......+...+...|++++|.++|+-+....| +..-|-.|..++-..|++++|+..|.......+ -|+..+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHH
Confidence 444555666667777888888888887777666 555666777777777888888888887777653 356666677777
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCC
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLP 345 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~ 345 (454)
+...|+.+.|.+-|+.....++-.|
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~~~~~~ 137 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRICGEVS 137 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHHhccCh
Confidence 7788888888888887776644333
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0012 Score=56.12 Aligned_cols=182 Identities=10% Similarity=0.024 Sum_probs=107.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh-hH---HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV-SW---TSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
++...-.....+...|++++|.+.|+++....|+.. .- -.++.++.+.+++++|...+++..+..+......+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 333344455556677888888888888877766432 21 34556777888888888888887775332222333333
Q ss_pred HHHHhc--C---------------CC---hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 012879 318 LNACSH--G---------------GL---VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI 377 (454)
Q Consensus 318 ~~~~~~--~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 377 (454)
+.+.+. . .| ..+|...|+.+++.+ |+. .-..+|...+..+...
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~S-------------~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PNS-------------QYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cCC-------------hhHHHHHHHHHHHHHH-
Confidence 333321 1 11 234445555555531 221 2223333333222221
Q ss_pred CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 378 TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 378 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
-..---.+..-|.+.|.+..|+.-++.+++.-|+.+ .+...+..+|...|..++|..+...+.
T Consensus 174 -la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 -LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred -HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 001111345667888999999999999998888743 456678888999999999988776653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=51.73 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=40.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
..+...+...|++++|...+++..+. .+.+...+..+...+...++++.|.+.++...+. .|.+...+..+...+.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHH
Confidence 33444555555555555555555442 1222233444444444444444444444444443 1223334444444444
Q ss_pred hcCChhHHHHHHHHh
Q 012879 255 KCGCIFSASKLFEDI 269 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~ 269 (454)
..|+++.|...+...
T Consensus 80 ~~~~~~~a~~~~~~~ 94 (100)
T cd00189 80 KLGKYEEALEAYEKA 94 (100)
T ss_pred HHHhHHHHHHHHHHH
Confidence 444444444444443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00011 Score=66.47 Aligned_cols=103 Identities=13% Similarity=-0.061 Sum_probs=83.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
....+...|++++|++.|+++++... -+...|..+..++...|++++|+..++.+... -+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 34567788999999999999998643 35677888888999999999999999999874 2335778888899999999
Q ss_pred ChHHHHHHHhcCCCCCCcHhHHHHHH
Q 012879 362 RLEQAEKTALGIPSEITDVVVWRTLL 387 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p~~~~~~~l~ 387 (454)
++++|...|++.....|+.......+
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999999888766554444443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.96 E-value=3.1e-05 Score=53.73 Aligned_cols=82 Identities=16% Similarity=0.165 Sum_probs=41.5
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|+++.|+.+++++.+.....++...+..+..++.+.|++++|..+++. .+. .+.+......+..++.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~--~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL--DPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH--HHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC--CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4566666666666666411111333444455666666666666666655 222 1223333344456666666666666
Q ss_pred HHHHH
Q 012879 264 KLFED 268 (454)
Q Consensus 264 ~~~~~ 268 (454)
++|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 65553
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0016 Score=57.06 Aligned_cols=155 Identities=14% Similarity=0.069 Sum_probs=79.8
Q ss_pred chhHHHHHHHhhhh----cCCCCchHHHHHHHHHHHHhc-CChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhc
Q 012879 222 DVKSCQLIHGYGEK----RGFTAFDIRVLNCLIDTYAKC-GCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMH 289 (454)
Q Consensus 222 ~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~ 289 (454)
+++.|...+++..+ .|....-...+..+...|... |+++.|++.|++.... ... ...+..+...+.+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 55555555554433 121111233455566666666 7777777777776554 111 12445566677777
Q ss_pred CChhHHHHHHHHHHhCCCC-----CcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHh-cCCCCC--hhHHHHHHHHHHh-
Q 012879 290 GMGKEAVENFGRMQKVGLK-----PNRV-TFLSVLNACSHGGLVEEGLNFFDKMVEE-CEVLPD--IKHYGCLIDMLGR- 359 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~l~~~~~~- 359 (454)
|++++|.++|++....... .+.. .|...+-++...||+..|.+.+++.... +++..+ ......|+.+|-.
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~ 248 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEG 248 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhC
Confidence 7888888887776653221 1221 2222333445567777777777777643 123222 2344555666553
Q ss_pred -cCChHHHHHHHhcCCCC
Q 012879 360 -AGRLEQAEKTALGIPSE 376 (454)
Q Consensus 360 -~g~~~~A~~~~~~~~~~ 376 (454)
...+++|+.-|+.+...
T Consensus 249 D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 249 DVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp -CCCHHHHCHHHTTSS--
T ss_pred CHHHHHHHHHHHcccCcc
Confidence 24466666777766654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00091 Score=58.58 Aligned_cols=174 Identities=16% Similarity=0.174 Sum_probs=80.3
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCch
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVY 110 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 110 (454)
...|+.....|-..|++++|.+.|.+.-......-. + ..-...|.....++.+. ++++|...++.
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~-~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~----------- 99 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGD--K-FEAAKAYEEAANCYKKG-DPDEAIECYEK----------- 99 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT---H-HHHHHHHHHHHHHHHHT-THHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCC--H-HHHHHHHHHHHHHHHhh-CHHHHHHHHHH-----------
Confidence 345666666666777777777777766533222111 1 00112222222222222 44444444433
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhc-CCHHHHHHHHhhCCC-----CC----cchHHHHHHH
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW-GELEFARSLFEEMPC-----RN----VVSWTGIIDG 180 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~-~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~ 180 (454)
.+..|...|+++.|-+.+.. +...|-.. |+++.|++.|++..+ .. ..++..+...
T Consensus 100 ----A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 ----AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp ----HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ----HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 33445555555555444432 23344444 555555555544331 11 1344556667
Q ss_pred HHhcCChHHHHHHHHHHHHccCCC-----CChh-hHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 181 YTRMNRSNEALALFRKMVACEYTE-----PSEI-TILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
+.+.|++++|+++|++.... ... .+.. .|...+-++...||...|.+.++....
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77777777777777776553 111 1111 122233344555666666666666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0023 Score=60.05 Aligned_cols=199 Identities=14% Similarity=0.094 Sum_probs=120.7
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHH-cCCCCC--------chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhH
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISK-VGFQSH--------VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTW 143 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 143 (454)
.+..|..+.......-.++-|+..|-.... .|++.- ...-.+ ..-+--|++++|++++-++.++|.
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~a--ei~~~~g~feeaek~yld~drrDL--- 765 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRA--EISAFYGEFEEAEKLYLDADRRDL--- 765 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhH--hHhhhhcchhHhhhhhhccchhhh---
Confidence 677788887776666667777766654432 122100 000111 112224788888888888776654
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhCCCC--C---cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHH
Q 012879 144 NVMITGLVKWGELEFARSLFEEMPCR--N---VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIW 218 (454)
Q Consensus 144 ~~ll~~~~~~~~~~~A~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (454)
.|..+.+.|++-...++++.-... | ...|+.+...+.....|++|.+.|...... ...+.++.
T Consensus 766 --Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~~ecly 833 (1189)
T KOG2041|consen 766 --AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQIECLY 833 (1189)
T ss_pred --hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhHHHHHH
Confidence 456677888888888888664431 1 257888888888888888888888765332 23455555
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHH
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
+..+++.-+.+...+ |.+....-.+.+++.+.|.-++|.+.|-+-.. |. ..+..|...+++.+|.++
T Consensus 834 ~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pk-----aAv~tCv~LnQW~~avel 900 (1189)
T KOG2041|consen 834 RLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL--PK-----AAVHTCVELNQWGEAVEL 900 (1189)
T ss_pred HHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhccC--cH-----HHHHHHHHHHHHHHHHHH
Confidence 555555544444332 33555666677777777777777776655443 21 234455566666666666
Q ss_pred HHH
Q 012879 299 FGR 301 (454)
Q Consensus 299 ~~~ 301 (454)
-++
T Consensus 901 aq~ 903 (1189)
T KOG2041|consen 901 AQR 903 (1189)
T ss_pred HHh
Confidence 544
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00031 Score=61.22 Aligned_cols=133 Identities=13% Similarity=0.138 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
.+|-.++...-+.+..+.|..+|.+..+.+ +........+++..+ ..++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 356667777777777788888888877543 223333333333322 345666688888888774 4456667777778
Q ss_pred HHHhcCChHHHHHHHhcCCCCCCcH----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 356 MLGRAGRLEQAEKTALGIPSEITDV----VVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.+.+.|+.+.|..+|++.....|.. ..|...+.--.+.|+.+.+..+.+++.+.-+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 7888888888888888877763333 37777777777888888888888888776554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00068 Score=64.16 Aligned_cols=140 Identities=11% Similarity=-0.004 Sum_probs=98.4
Q ss_pred CChhhHHHHHHHHHh--c---CChhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcC--------CChHHHHHHHHHHHH
Q 012879 274 KNLVSWTSIISGFAM--H---GMGKEAVENFGRMQKVGLKPN-RVTFLSVLNACSHG--------GLVEEGLNFFDKMVE 339 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~ 339 (454)
.+...|...+.+... . ++...|..+|++..+. .|+ ...+..+..++... .+...+.+..+....
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 477888888877543 2 2367899999999886 454 33444433333211 122334444444333
Q ss_pred hcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 340 ECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 340 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
......+...|..+.-.....|++++|...++++....|+...|..+...+...|+.++|.+.++++..++|.++.
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 2123345577777766677789999999999999988888889999999999999999999999999999998774
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.013 Score=51.33 Aligned_cols=249 Identities=15% Similarity=0.067 Sum_probs=129.6
Q ss_pred cCCHHHHHHHHhhCCC-CCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHH
Q 012879 153 WGELEFARSLFEEMPC-RNVV--SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLI 229 (454)
Q Consensus 153 ~~~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 229 (454)
.|+++.|.+-|+.|.. |... -...|.-.--+.|+.+.|.++-++.-. .-+--.......+...+..|+|+.|+++
T Consensus 133 eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 133 EGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred cCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 4555555555555553 1111 111122222344555555555554433 1122234455555555556666666555
Q ss_pred HHhhhhcCCCCchHHH--HHHHHHHHH---hcCChhHHHHHHHHhhhcCCChhhHHH-HHHHHHhcCChhHHHHHHHHHH
Q 012879 230 HGYGEKRGFTAFDIRV--LNCLIDTYA---KCGCIFSASKLFEDISVERKNLVSWTS-IISGFAMHGMGKEAVENFGRMQ 303 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~~--~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~m~ 303 (454)
.+.-.......++..- -..|+.+-. -..+...|...-.+..+..||...-.. -..++.+.|+..++-.+++.+-
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aW 290 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAW 290 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHH
Confidence 5554443322222211 111111111 112344555555555555566543332 3466777888888888888877
Q ss_pred hCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhH
Q 012879 304 KVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVV 382 (454)
Q Consensus 304 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 382 (454)
+....|+. .. +....+.| +.+..-+++..+...++|+ ......+.++-...|++..|..--+......|....
T Consensus 291 K~ePHP~i--a~--lY~~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~ 364 (531)
T COG3898 291 KAEPHPDI--AL--LYVRARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESA 364 (531)
T ss_pred hcCCChHH--HH--HHHHhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhH
Confidence 76544442 21 11233444 3444455555444345554 445556667777778887777666665555677777
Q ss_pred HHHHHHHHH-cCCChhHHHHHHHHHHHh
Q 012879 383 WRTLLGACS-FHGNVEMGERVTRKILEM 409 (454)
Q Consensus 383 ~~~l~~~~~-~~g~~~~A~~~~~~~~~~ 409 (454)
|..|.+.-. ..||-.++...+.+.+..
T Consensus 365 ~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 365 YLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 777766554 448888888888777764
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.1e-05 Score=52.88 Aligned_cols=57 Identities=18% Similarity=0.136 Sum_probs=30.4
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 387 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
...+...|++++|++.|+++++..|.++..+..++.++.+.|++++|...++++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0047 Score=48.24 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=22.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
|..++...|++.+|...|++...--..-|....-.+.++....+++..|...++.+.
T Consensus 95 La~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~ 151 (251)
T COG4700 95 LANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLM 151 (251)
T ss_pred HHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHh
Confidence 334444444444444444443332222233333334444444444444444444443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.017 Score=51.77 Aligned_cols=133 Identities=11% Similarity=0.033 Sum_probs=105.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
.+|...+..-.+....+.|..+|.+..+.| +.++...+++++..++ .|+...|..+|+.=... ++.+..--...+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 356677777778888999999999999988 6788889999998876 48889999999987653 3333333356677
Q ss_pred HHHhcCChHHHHHHHhcCCCC-CCc--HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 356 MLGRAGRLEQAEKTALGIPSE-ITD--VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
-+.+.++-+.|..+|+....+ ..+ ...|..+|.--..-|+...+..+-+++.+.-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 788999999999999976665 222 568999999889999999999888888877665
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.015 Score=51.09 Aligned_cols=285 Identities=13% Similarity=0.122 Sum_probs=188.5
Q ss_pred HHHHHHHHH--hcCCHHHHHHHHhhCC---CCCcchHHHHHH--HHHhcCChHHHHHHHHHHHHccCCCCChhh--HHhH
Q 012879 143 WNVMITGLV--KWGELEFARSLFEEMP---CRNVVSWTGIID--GYTRMNRSNEALALFRKMVACEYTEPSEIT--ILAV 213 (454)
Q Consensus 143 ~~~ll~~~~--~~~~~~~A~~~~~~~~---~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l 213 (454)
|..|-.+++ -.|+-..|.+.-.+.. ..|....-.++. +-.-.|+++.|.+-|+.|... |.... ..-|
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d----PEtRllGLRgL 160 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD----PETRLLGLRGL 160 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC----hHHHHHhHHHH
Confidence 444444443 4567777776665543 244444444444 344569999999999999863 33222 2233
Q ss_pred HHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCChhh--HHHHHHHHH-
Q 012879 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RKNLVS--WTSIISGFA- 287 (454)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~--~~~l~~~~~- 287 (454)
.-...+.|+.+.|..+-+..... -|.-+......+...+..|+++.|+++++.-... .++..- -..|+.+-.
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~ 238 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM 238 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence 33345789999999988888775 5657788999999999999999999999977654 344321 222222211
Q ss_pred --hcCChhHHHHHHHHHHhCCCCCcHHHH-HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 288 --MHGMGKEAVENFGRMQKVGLKPNRVTF-LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 288 --~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
-.-+...|...-.+..+ +.|+-..- .....++.+.|+..++-.+++.+-+. .|.+..+... .+.+.|+..
T Consensus 239 s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdta 311 (531)
T COG3898 239 SLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDTA 311 (531)
T ss_pred HHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCcH
Confidence 12345666666555554 45554432 23347788999999999999999865 4555544333 345666643
Q ss_pred HH----HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc-CCcCcHHHHHHH
Q 012879 365 QA----EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV-GRFGDAERLRRV 439 (454)
Q Consensus 365 ~A----~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~ 439 (454)
.. .+-++.|+.+ +..+.-.+..+....|++..|..-.+.+....|.. ..|..|+++-... |+-.++...+-+
T Consensus 312 ~dRlkRa~~L~slk~n--naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAq 388 (531)
T COG3898 312 LDRLKRAKKLESLKPN--NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQ 388 (531)
T ss_pred HHHHHHHHHHHhcCcc--chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHH
Confidence 32 1234455544 67777888889999999999998888888776653 3677788877655 999999998887
Q ss_pred Hhhc
Q 012879 440 MDER 443 (454)
Q Consensus 440 ~~~~ 443 (454)
-++.
T Consensus 389 av~A 392 (531)
T COG3898 389 AVKA 392 (531)
T ss_pred HhcC
Confidence 7654
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00039 Score=55.93 Aligned_cols=134 Identities=8% Similarity=-0.026 Sum_probs=89.0
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.....|..+...+...|++++|+..|++.. ..... ++ .....+..+..++...|++++|...+++..+.. +.+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~~~--~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 105 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEAL---KLEED--PN-DRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQ 105 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HHhhc--cc-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence 455578888888999999999999999987 43333 20 024678888899999999999999999988864 335
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (454)
...+..+..++...|+...+..-++.. ...+++|.+++++....++..|..++..+...|+
T Consensus 106 ~~~~~~lg~~~~~~g~~~~a~~~~~~A-----------------~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 106 PSALNNIAVIYHKRGEKAEEAGDQDEA-----------------EALFDKAAEYWKQAIRLAPNNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHHHHHHcCChHhHhhCHHHH-----------------HHHHHHHHHHHHHHHhhCchhHHHHHHHHHhcCc
Confidence 666777777888777754443322211 1124555666665555455445555555544443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00046 Score=55.49 Aligned_cols=132 Identities=13% Similarity=0.139 Sum_probs=81.3
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN--RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGC 352 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (454)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+. .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 334566677777778888888888887776433222 346666777777788888888888777753 1223455556
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCc
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRF 430 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (454)
+..++...|+...+..-++... ..+++|.++++++.+.+|.+ +..++.-+...|+.
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~~ 167 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGRS 167 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCcc
Confidence 6666666666555443222111 12577788888887776655 55555555555543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.9e-05 Score=50.17 Aligned_cols=61 Identities=15% Similarity=0.109 Sum_probs=50.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
+...+.+.|++++|.+.|+++....| +...+..+..++...|++++|...|+++++..|++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 45677888999999999998888855 56788888899999999999999999999888875
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0022 Score=50.04 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=110.5
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc---HhHH
Q 012879 307 LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD---VVVW 383 (454)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~ 383 (454)
+.|+...-..|..+..+.|+..+|...|++.... -+..|......+.++....+++..|...++++-+.+|. +.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 4678887788999999999999999999999885 56778888999999999999999999999987776332 3445
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 384 RTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
-.+...+...|++..|+..|+.++..-|+. .........+.+.|+..++..-+..+.+.
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d~ 222 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVDT 222 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 567788999999999999999999877753 34556677888999888887666655543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.8e-05 Score=42.01 Aligned_cols=29 Identities=38% Similarity=0.652 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 306 (454)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56666666666666666666666666654
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00019 Score=60.58 Aligned_cols=106 Identities=12% Similarity=0.035 Sum_probs=59.9
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcC---CChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFH---GNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
-|...|-.|...|...|+.+.|...|.+.... .+++..+..+..++... .+..++..+|++++..+|.+......+
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 34555666666666666666666666655554 33444444444444322 233456666666666666666666666
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhcccccCCC
Q 012879 421 YNILAGVGRFGDAERLRRVMDERNAFKVPG 450 (454)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 450 (454)
+..+...|++.+|...++.|.+.....+|.
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~r 263 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPR 263 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCch
Confidence 666666666666666666666655544443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.021 Score=50.51 Aligned_cols=107 Identities=16% Similarity=0.207 Sum_probs=60.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 392 (454)
+.+..+.-+...|+...|.++-.+. ++ |+...|...+.+++..++|++-.++... .+ .+.-|...+.+|.+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK--sPIGyepFv~~~~~ 249 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS--KK--SPIGYEPFVEACLK 249 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC--CCCChHHHHHHHHH
Confidence 3344444455556655555543333 33 5666666667777777777666665443 22 34666666677777
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 393 HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
.|+..+|..+..++ .+..-+..|.++|.+.+|.+..
T Consensus 250 ~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 250 YGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHH
Confidence 77766666666651 1144555666666666665543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0008 Score=58.68 Aligned_cols=128 Identities=18% Similarity=0.100 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc-cCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ-NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
+|..+++..-+.+..+.|..+|.+.++. ...+...|......-.. .++.+.|..+|+...+. .+.+...+...++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 3455555555555556666666655542 12223333333333222 34444455555555554 3435555555556
Q ss_pred HHHhcCChhHHHHHHHHhhhcCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 252 TYAKCGCIFSASKLFEDISVERKNLV----SWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.+.+.|+.+.|..+|++....-+... .|...+..=.+.|+.+.+.++.+++.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666665555433222 455555555555555555555555554
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.4e-05 Score=41.68 Aligned_cols=30 Identities=13% Similarity=0.318 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCC
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHS 64 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 64 (454)
++||.++++|++.|++++|.++|++|. +.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~---~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMR---ERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHh---HCc
Confidence 489999999999999999999999998 554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00059 Score=48.44 Aligned_cols=77 Identities=12% Similarity=0.197 Sum_probs=58.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHhcCC--------ChHHHHHHHHHHHHhcCCCCChhHHHH
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGL-KPNRVTFLSVLNACSHGG--------LVEEGLNFFDKMVEECEVLPDIKHYGC 352 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (454)
.|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-+.+.+|+.|... +++|+..+|+.
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etYni 109 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETYNI 109 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHHHH
Confidence 45555566888888888888888888 788888888887766532 244567788888877 88888888888
Q ss_pred HHHHHHh
Q 012879 353 LIDMLGR 359 (454)
Q Consensus 353 l~~~~~~ 359 (454)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 8877654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00088 Score=53.65 Aligned_cols=62 Identities=8% Similarity=-0.157 Sum_probs=26.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
..+...+...|++++|...|+.......-.+ ...++..+..+|...|++++|++.+++....
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3333444444555555555554443200000 1123444444555555555555555544433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0023 Score=47.19 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=25.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCC--hhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPS--EITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
..++-..|+.++|+.+|++.... |.... ...+..+.+.+...|++++|..+++....
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~-gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAA-GLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc-CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555555555555555554 32222 12333344444444444444444444443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.027 Score=49.82 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=50.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
.+.-+...|+...|.++-.+. + .|+..-|..-+.+++..++|++-.++... +-.+.-|..++.+|.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 344444555555555443332 1 24555555555566666665554443221 112344555555555666
Q ss_pred ChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 362 RLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
+..+|..+..++. +..-+..|.+.|++.+|.+..-
T Consensus 252 ~~~eA~~yI~k~~--------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 252 NKKEASKYIPKIP--------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CHHHHHHHHHhCC--------hHHHHHHHHHCCCHHHHHHHHH
Confidence 6666655555522 1333445555555555554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=2.3e-05 Score=51.83 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=36.6
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
...|++++|++.|+++++..|.+...+..++.+|.+.|++++|.++++++.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 3456677777777777777777666666777777777777777777766665443
|
... |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00049 Score=62.48 Aligned_cols=107 Identities=9% Similarity=0.094 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcC----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVER----KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 318 (454)
......+++......+++.+..++.+....+ .-..|..+++..|.+.|..+.++.++..=...|+-||..+++.++
T Consensus 66 ~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lm 145 (429)
T PF10037_consen 66 SLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLM 145 (429)
T ss_pred HHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHH
Confidence 3333444444444444455555544444431 112233455555555555555555555555555555555555555
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCCCChhHH
Q 012879 319 NACSHGGLVEEGLNFFDKMVEECEVLPDIKHY 350 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 350 (454)
+.+.+.|++..|.++...|..+ ....+..++
T Consensus 146 d~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~ 176 (429)
T PF10037_consen 146 DHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQ 176 (429)
T ss_pred HHHhhcccHHHHHHHHHHHHHh-hccCCchHH
Confidence 5555555555555555555544 333333333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00032 Score=63.69 Aligned_cols=119 Identities=14% Similarity=0.114 Sum_probs=80.8
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
-+......+++.+....+.+.+..++.+.+ ...-.... -..|.+++++.|...|..+.+..++..=...|+-||
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R---~s~~~~~~---~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFR---HSPNCSYL---LPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHH---cCcccccc---cCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 345566667777777777777777777775 22111001 234556888888888888888888888778888888
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC----CCchhHHHHHHHHHhc
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE----RNLVTWNVMITGLVKW 153 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~ 153 (454)
..++|.||+.+.+.|++..|.++...|.. .+..|+...+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888777653 3445555555555544
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00018 Score=57.71 Aligned_cols=112 Identities=11% Similarity=-0.121 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHH
Q 012879 328 EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
..+...+..+.+..+..-....+..+...+...|++++|+..|++.....|+ ..++..+...+...|++++|+..+
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~ 95 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYY 95 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444444322122233556677788888999999999999988655222 357888999999999999999999
Q ss_pred HHHHHhhcCCCCcHHHHHHHHH-------hcCCcCcHHHHHHH
Q 012879 404 RKILEMERGYGGDYVLMYNILA-------GVGRFGDAERLRRV 439 (454)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~~ 439 (454)
+++++..|.....+..++.++. +.|++++|...+++
T Consensus 96 ~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 96 FQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 9999998887777778888887 77887766555543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00038 Score=61.00 Aligned_cols=257 Identities=12% Similarity=0.025 Sum_probs=164.3
Q ss_pred HHhccCCcchHhHHHHHHHHcCCCCCc----hhHHHHHHHHHhCCChhHHHHHHhhCC-------C--CCchhHHHHHHH
Q 012879 83 TCATLSHPNLGTQLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDEMP-------E--RNLVTWNVMITG 149 (454)
Q Consensus 83 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~--~~~~~~~~ll~~ 149 (454)
-+++.|+......+|+..++.| .-|. .+|..|.++|.-.+++++|+++...=. . -...+...+-+.
T Consensus 26 RLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4789999999999999999988 3343 457777888888899999998754321 0 122233344444
Q ss_pred HHhcCCHHHHHHHHhhCCC---------CCcchHHHHHHHHHhcCC--------------------hHHHHHHHHHHH--
Q 012879 150 LVKWGELEFARSLFEEMPC---------RNVVSWTGIIDGYTRMNR--------------------SNEALALFRKMV-- 198 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~---------~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~-- 198 (454)
+--.|.+++|.-...+-.. .....+..+...|...|+ ++.|.++|.+-.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l 184 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLEL 184 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666554332211 122334445555554443 234444444322
Q ss_pred --HccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhh----cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 199 --ACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEK----RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 199 --~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
+.+.--.....|..|...|.-.|+++.|+...+.-.. -|........+..+.+++.-.|+++.|.+.|+.....
T Consensus 185 ~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L 264 (639)
T KOG1130|consen 185 SEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL 264 (639)
T ss_pred HHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH
Confidence 2211122345677778888888999999877665433 3323334567888999999999999999999875443
Q ss_pred -----CC--ChhhHHHHHHHHHhcCChhHHHHHHHHHHh----CC-CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 273 -----RK--NLVSWTSIISGFAMHGMGKEAVENFGRMQK----VG-LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 273 -----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~----~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.. ...+.-.|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|..+.+...+.
T Consensus 265 Aielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 265 AIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 12 333555677777777888999888766332 11 1123457778899999999999998887766553
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00025 Score=46.82 Aligned_cols=59 Identities=17% Similarity=0.145 Sum_probs=33.2
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhH
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSW 279 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 279 (454)
..|++++|.++++.+... .|.+..+...++.+|.+.|++++|.++++++....|+...|
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 345555555555555554 34455566666666666666666666666666655553333
|
... |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0013 Score=54.45 Aligned_cols=169 Identities=12% Similarity=0.044 Sum_probs=81.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh-
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS- 322 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~- 322 (454)
.....+...|++++|.+.|+.+....|+. ...-.++.++.+.|+++.|...+++..+.-+.-....+...+.+.+
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 34444555666666666666666553321 2334455566666666666666666555311111111111111111
Q ss_pred ------------cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 012879 323 ------------HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390 (454)
Q Consensus 323 ------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 390 (454)
..+...+|...|+.+.+. |=......+|...+..+... -..---.+..-|
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----------------yP~S~y~~~A~~~l~~l~~~--la~~e~~ia~~Y 151 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKR----------------YPNSEYAEEAKKRLAELRNR--LAEHELYIARFY 151 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-----------------TTSTTHHHHHHHHHHHHHH--HHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHH----------------CcCchHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 112233444455555443 22223333343333332221 011112245667
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCC---CcHHHHHHHHHhcCCcCcHH
Q 012879 391 SFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVGRFGDAE 434 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~ 434 (454)
.+.|.+..|..-++.+++.-|+.. .....++.++.+.|..+.+.
T Consensus 152 ~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 152 YKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 888888888888888888877743 35567788888888776443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0097 Score=50.61 Aligned_cols=168 Identities=11% Similarity=0.061 Sum_probs=84.0
Q ss_pred HHccCchhHHHHHHHhhhhcCCCCchHHHH---HHHHHHHHhcCChhHHHHHHHHhhhcCCCh--hhHHHHHHHHHh--c
Q 012879 217 IWQNGDVKSCQLIHGYGEKRGFTAFDIRVL---NCLIDTYAKCGCIFSASKLFEDISVERKNL--VSWTSIISGFAM--H 289 (454)
Q Consensus 217 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~--~ 289 (454)
+...|+++.|.+.|+.+... .|.++... -.++.+|.+.++++.|...|++..+..|+. ..+...+.+.+. .
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhc
Confidence 34455555555555555553 23233222 445666777777777777777776664422 122222222211 1
Q ss_pred C---------------C---hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH
Q 012879 290 G---------------M---GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG 351 (454)
Q Consensus 290 g---------------~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 351 (454)
+ + ..+|...|+++++. |=...-..+|...+..+... .. ..--
T Consensus 120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la-~~e~ 179 (243)
T PRK10866 120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LA-KYEL 179 (243)
T ss_pred chhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HH-HHHH
Confidence 0 1 12344444444443 22223334444444443321 00 1111
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
.+..-|.+.|.+..|..-++.+.+..|+ ......++.+|...|..++|......+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3455567777777777666666655332 345556667777777777776665544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.003 Score=59.94 Aligned_cols=63 Identities=10% Similarity=0.036 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
++..+..+.-.+...|++++|...+++.....|+...|..+...+...|+.++|.+.+++...
T Consensus 419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 334444444444444555555555555544444444444444555555555555555554444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=49.38 Aligned_cols=58 Identities=16% Similarity=0.072 Sum_probs=39.3
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
..|.+.+++++|.++++++++.+|.++..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 4556666777777777777777777666666677777777777777777766665544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0026 Score=52.47 Aligned_cols=135 Identities=7% Similarity=-0.062 Sum_probs=102.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHH-----HH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHY-----GC 352 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~ 352 (454)
+-+.++..+.-.|.+.-....+.+.++...+.++.....+.+.-.+.||.+.|..+|++..+. .-+.+.... ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445666777778888889999999988776777888888999999999999999999988766 222333333 33
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
....|.-.+++.+|...+.++... ..++...|.-.-+....|+..+|++.++.+++..|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 344566788999999999988877 3455555555555666789999999999999988873
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.044 Score=49.27 Aligned_cols=61 Identities=13% Similarity=0.022 Sum_probs=49.7
Q ss_pred hHHHHHHHH--HHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 381 VVWRTLLGA--CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 381 ~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
..-|.|.++ +..+|++.++.-.-.-+.+..| ++.+|..++-++....++++|.+++..+.-
T Consensus 461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 344555554 4578999999988888888888 777899999999999999999999987654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00026 Score=60.60 Aligned_cols=102 Identities=8% Similarity=0.046 Sum_probs=60.2
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLL 387 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 387 (454)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+..+|...|++++|...|+.+....|+ ...+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 444444444556777777777777776421111 1234555666677777777777777766655332 33444455
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
..+...|+.++|..+++++++..|++.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 566667777777777777776666543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0011 Score=55.94 Aligned_cols=101 Identities=10% Similarity=0.014 Sum_probs=79.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
.-+.+.+++.+|+..|.+.++ -.+-|.+.|..-..+|.+.|.++.|.+-.+..+.. .|....+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCc
Confidence 445677888888888888887 45666777888888888888888888888877775 56577788888888888888
Q ss_pred hhHHHHHHHHhhhcCCChhhHHHHH
Q 012879 259 IFSASKLFEDISVERKNLVSWTSII 283 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~~~~~~~~l~ 283 (454)
+++|++.|++.....|+-.+|-.=+
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHH
Confidence 8888888888888878666554433
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0081 Score=49.73 Aligned_cols=165 Identities=13% Similarity=-0.012 Sum_probs=104.6
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCCC--C--------cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhh
Q 012879 140 LVTWNVMITGLVKWGELEFARSLFEEMPCR--N--------VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT 209 (454)
Q Consensus 140 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~--~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 209 (454)
...|+.+.+.+.-..-+++-+..++.-..| . ...-+.++.++.-.+.+.-...++.+.++. ..+.++..
T Consensus 136 gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L 214 (366)
T KOG2796|consen 136 GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQL 214 (366)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHH
Confidence 334555555555554455555555443322 1 123455666677777888888888888875 55666777
Q ss_pred HHhHHHHHHccCchhHHHHHHHhhhhcCCCC----chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHH
Q 012879 210 ILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA----FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIIS 284 (454)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~ 284 (454)
...+.+...+.||.+.|...|+...+....- ....+.......|.-.+++..|...|.++....| |+..-|.-.-
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKAL 294 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKAL 294 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHH
Confidence 7778888888888888888888666542211 1222333334456667778888888877777644 5555565555
Q ss_pred HHHhcCChhHHHHHHHHHHhC
Q 012879 285 GFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~ 305 (454)
+..-.|+..+|++.++.|.+.
T Consensus 295 cllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 295 CLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 556677888888888888775
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.001 Score=47.21 Aligned_cols=79 Identities=10% Similarity=0.009 Sum_probs=66.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHhcCCC-CCCCCCCChhhHHHHHHHHhccC--------CcchHhHHHHHHHHcCC
Q 012879 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSH-SPLPPLFDSFTYSFLIRTCATLS--------HPNLGTQLHAVISKVGF 105 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~ 105 (454)
..-|..+...+++...-.+|+.++ +.|+ - | +..+|+.++.+.+++. +.-..+.+|+.|+..++
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslk---RN~i~l--P---sv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~l 100 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLK---RNGITL--P---SVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKL 100 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHH---hcCCCC--C---cHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhcc
Confidence 355666777799999999999999 8888 6 8 9999999999987655 23456889999999999
Q ss_pred CCCchhHHHHHHHHHh
Q 012879 106 QSHVYVNTALVNMYVS 121 (454)
Q Consensus 106 ~~~~~~~~~l~~~~~~ 121 (454)
+|+..+|+.++..+.+
T Consensus 101 KP~~etYnivl~~Llk 116 (120)
T PF08579_consen 101 KPNDETYNIVLGSLLK 116 (120)
T ss_pred CCcHHHHHHHHHHHHH
Confidence 9999999999987754
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0042 Score=45.86 Aligned_cols=90 Identities=20% Similarity=0.177 Sum_probs=45.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHh
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPN--RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGR 359 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 359 (454)
..++-..|+.++|+.+|++....|+... ...+..+...+...|++++|..+++.....++-.+ +......+..++..
T Consensus 8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 3444556666666666666666554433 22344444555666666666666666655311100 11112222334555
Q ss_pred cCChHHHHHHHhc
Q 012879 360 AGRLEQAEKTALG 372 (454)
Q Consensus 360 ~g~~~~A~~~~~~ 372 (454)
.|+.++|++.+-.
T Consensus 88 ~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 88 LGRPKEALEWLLE 100 (120)
T ss_pred CCCHHHHHHHHHH
Confidence 6666666655543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00077 Score=44.58 Aligned_cols=61 Identities=16% Similarity=0.034 Sum_probs=28.1
Q ss_pred hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC-ChhHHHHHHHHhhh
Q 012879 209 TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG-CIFSASKLFEDISV 271 (454)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 271 (454)
+|..+...+...|++++|...|++..+. .|.++.++..+..+|...| ++++|++.+++..+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444444444444444444444444443 2334444555555555554 35555555444433
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.018 Score=53.97 Aligned_cols=87 Identities=16% Similarity=0.061 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHh----------
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVV---------- 381 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~---------- 381 (454)
.+...+...+-+...+..|-++|..|-.. ..+++.....+++++|..+-++..+..||+.
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH----------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 34444444444555566666666666322 3455666667777777777666665533332
Q ss_pred -HHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 382 -VWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 382 -~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
-|.-.-++|.+.|+..+|.++++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 122223456677777777777777653
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0021 Score=51.84 Aligned_cols=99 Identities=18% Similarity=0.363 Sum_probs=69.0
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC--------------
Q 012879 264 KLFEDISVERKNLVSWTSIISGFAM-----HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG-------------- 324 (454)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------------- 324 (454)
..|+.......+-.+|..++..|.+ .|..+=....+..|.+.|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 3444443333566667666666654 356666677777788888888888888888776542
Q ss_pred --CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 325 --GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 325 --~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
.+-+-|++++++|... |+-||..++..+++.|++.+..
T Consensus 115 yp~Qq~c~i~lL~qME~~-gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENN-GVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred CcHHHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHhccccHH
Confidence 1345688888888776 8888888888888888776653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.048 Score=51.71 Aligned_cols=252 Identities=11% Similarity=0.022 Sum_probs=133.7
Q ss_pred hhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-CCcchHHHH----------HHHHHhcCChHHHHHH
Q 012879 125 LKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC-RNVVSWTGI----------IDGYTRMNRSNEALAL 193 (454)
Q Consensus 125 ~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l----------~~~~~~~~~~~~a~~~ 193 (454)
+++|.++.+. .|.+..|..+.......-.++.|+..|-+... +.+.....| ...-.--|++++|.++
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 4444444443 25566777777766666667777766665543 222111111 1111224788888888
Q ss_pred HHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC
Q 012879 194 FRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER 273 (454)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 273 (454)
|-+|-+. ...+....+.||+-.+.++++.--.......-...++.+.+.+.....+++|.+.|..-..
T Consensus 757 yld~drr----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-- 824 (1189)
T KOG2041|consen 757 YLDADRR----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-- 824 (1189)
T ss_pred hhccchh----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--
Confidence 8777553 2345556677777777666654322211111234677777777777777777777765433
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q 012879 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
....+.++.+..++++-+.+.+.+ +-+....-.+..++...|.-++|.+.|-+. +. | ..-
T Consensus 825 -----~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~----s~-p-----kaA 884 (1189)
T KOG2041|consen 825 -----TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRR----SL-P-----KAA 884 (1189)
T ss_pred -----hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhc----cC-c-----HHH
Confidence 123455555555555544444332 234444555666666666666665554332 21 2 223
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCcHhHHH--------------HHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSEITDVVVWR--------------TLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~--------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+..|...+++.+|.++-+...- |.+.+.- --|..+.+.|+.-+|.+++.+|.+....
T Consensus 885 v~tCv~LnQW~~avelaq~~~l--~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~ 955 (1189)
T KOG2041|consen 885 VHTCVELNQWGEAVELAQRFQL--PQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQE 955 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhh
Confidence 4556666666666666654432 2222211 1233445566666666666666655444
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0019 Score=49.77 Aligned_cols=84 Identities=11% Similarity=0.029 Sum_probs=40.4
Q ss_pred hcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 359 RAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
..|++++|..+|.-+... .-+..-|..|..++-..+++++|+..+..+...++.++.++...+.++...|+.+.|...|
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f 128 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCF 128 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHH
Confidence 445555555555443332 1233333444444444555555555555555555555555555555555555555555555
Q ss_pred HHHhh
Q 012879 438 RVMDE 442 (454)
Q Consensus 438 ~~~~~ 442 (454)
+...+
T Consensus 129 ~~a~~ 133 (165)
T PRK15331 129 ELVNE 133 (165)
T ss_pred HHHHh
Confidence 44443
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0094 Score=50.69 Aligned_cols=100 Identities=12% Similarity=0.025 Sum_probs=55.4
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCcHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMH---GMGKEAVENFGRMQKVGLKPNRVTF 314 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~ 314 (454)
.|.|...|-.|..+|...|+++.|..-|.+..+..| ++..+..+..++... ....++..+|+++.... +-|..+.
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 344666666666666666666666666666655533 445555555444332 13345666666666542 2234444
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
..|...+...|++.+|...|+.|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4455556666666666666666665
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0023 Score=54.78 Aligned_cols=85 Identities=9% Similarity=-0.046 Sum_probs=40.4
Q ss_pred HhcCChHHHHHHHhcCCCCCCcH----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHHHHHHHhcCCc
Q 012879 358 GRAGRLEQAEKTALGIPSEITDV----VVWRTLLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYNILAGVGRF 430 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 430 (454)
.+.|++++|...|+......|+. ..+.-+..+|...|++++|...|+++++..|++ +..+..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 33455555555555544443332 234444455555555555555555555544442 22333344445555555
Q ss_pred CcHHHHHHHHhh
Q 012879 431 GDAERLRRVMDE 442 (454)
Q Consensus 431 ~~a~~~~~~~~~ 442 (454)
++|.++++++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00053 Score=46.00 Aligned_cols=62 Identities=13% Similarity=0.012 Sum_probs=47.8
Q ss_pred HHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 355 DMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
..|.+.+++++|.++++.+....| ++..+.....++...|++++|.+.++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 457778888888888888877733 55677777888888888888888888888888865543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0095 Score=48.14 Aligned_cols=105 Identities=19% Similarity=0.277 Sum_probs=69.2
Q ss_pred CCChhhHHhHHHHHHc-----cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhh
Q 012879 204 EPSEITILAVLPAIWQ-----NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVS 278 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 278 (454)
..+..+|..++..+.+ .|..+-....+..|.+-|+.. |..+|+.|++.+=+ |.+- -..+|+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~k-DL~~Y~~LLDvFPK-g~fv-p~n~fQ~~--------- 111 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEK-DLEVYKALLDVFPK-GKFV-PRNFFQAE--------- 111 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcc-cHHHHHHHHHhCCC-CCcc-cccHHHHH---------
Confidence 4556666666666643 356666677777777777655 78888888777643 2221 11111111
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC
Q 012879 279 WTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL 326 (454)
Q Consensus 279 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 326 (454)
...| -.+-+-|++++++|...|+.||..|+..+++.+.+.+.
T Consensus 112 ----F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 ----FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 22456799999999999999999999999999976654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.13 Score=46.35 Aligned_cols=383 Identities=13% Similarity=0.076 Sum_probs=191.0
Q ss_pred CCCCCchhHHHHHHHHh----hhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHH
Q 012879 7 SQTPNNITTQIHSHLLT----TNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIR 82 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~ 82 (454)
..++.+.+..||..+-+ ...++...+.-+.++++|.. ++.+.....+....+ ..|.. .|-.+..
T Consensus 18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~--~~~~s---------~~l~LF~ 85 (549)
T PF07079_consen 18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQ--QFGKS---------AYLPLFK 85 (549)
T ss_pred HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHH--hcCCc---------hHHHHHH
Confidence 44555555555555443 33334556677788888876 455655555555552 23322 2444444
Q ss_pred H--HhccCCcchHhHHHHHHHHc--CCC------------CCchhHHHHHHHHHhCCChhHHHHHHhhCCC--------C
Q 012879 83 T--CATLSHPNLGTQLHAVISKV--GFQ------------SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--------R 138 (454)
Q Consensus 83 ~--~~~~~~~~~a~~~~~~~~~~--~~~------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~ 138 (454)
+ +-+.+++++|.+.+..-.+. +.. +|...-+..++++...|+++++..+++++.+ =
T Consensus 86 ~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w 165 (549)
T PF07079_consen 86 ALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW 165 (549)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc
Confidence 3 34677888888888776553 222 2223335677788889999999999888863 2
Q ss_pred CchhHHHHHHHHHhcC--------C-------HHHHHHHHhhCCCCCc----------chHHHHHHHHHhc--CChHHHH
Q 012879 139 NLVTWNVMITGLVKWG--------E-------LEFARSLFEEMPCRNV----------VSWTGIIDGYTRM--NRSNEAL 191 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~--------~-------~~~A~~~~~~~~~~~~----------~~~~~l~~~~~~~--~~~~~a~ 191 (454)
+..+|+.++-.+.++= . ++.+.-+.++|...+. .....++....-. .+..--.
T Consensus 166 ~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~m 245 (549)
T PF07079_consen 166 NSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLM 245 (549)
T ss_pred cHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHH
Confidence 5667776544443321 1 1122222222221111 1111111111110 1112222
Q ss_pred HHHHHHHHccCCCCChh-hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc---hHHHHHHHHHHHHhcCChhHHHHHHH
Q 012879 192 ALFRKMVACEYTEPSEI-TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF---DIRVLNCLIDTYAKCGCIFSASKLFE 267 (454)
Q Consensus 192 ~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 267 (454)
++++.-.+. -+.|+.. ....+...+.. +.+++..+.+.+....+.+. -..++..++....+.++...|.+.+.
T Consensus 246 q~l~~We~~-yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~ 322 (549)
T PF07079_consen 246 QILENWENF-YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLA 322 (549)
T ss_pred HHHHHHHhh-ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 222222222 3334432 22223333332 44444444444443321111 12344555555556666666655555
Q ss_pred HhhhcCCChh---------------------hH------------------------HHHH---HHHHhcCC-hhHHHHH
Q 012879 268 DISVERKNLV---------------------SW------------------------TSII---SGFAMHGM-GKEAVEN 298 (454)
Q Consensus 268 ~~~~~~~~~~---------------------~~------------------------~~l~---~~~~~~g~-~~~A~~~ 298 (454)
-+.-..|+.. .+ ..|+ .-+-+.|. -++|+++
T Consensus 323 lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 323 LLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 4433222111 00 1111 11223343 6677777
Q ss_pred HHHHHhCCCCCcHHHHHHH----HHHHhc---CCChHHHHHHHHHHHHhcCCCCCh----hHHHHHHHH--HHhcCChHH
Q 012879 299 FGRMQKVGLKPNRVTFLSV----LNACSH---GGLVEEGLNFFDKMVEECEVLPDI----KHYGCLIDM--LGRAGRLEQ 365 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~--~~~~g~~~~ 365 (454)
++...+.. .-|...-+.+ =.+|.+ ...+.+-.++-+-+.+. |++|-. ..-|.|.++ +...|++.+
T Consensus 403 Lk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~-gl~~i~i~e~eian~LaDAEyLysqgey~k 480 (549)
T PF07079_consen 403 LKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEV-GLTPITISEEEIANFLADAEYLYSQGEYHK 480 (549)
T ss_pred HHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCCcccccHHHHHHHHHHHHHHHhcccHHH
Confidence 77766631 1122222211 122221 22334444444444444 777643 333444333 446788888
Q ss_pred HHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 366 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
+.-.-.-.....|++.+|..++-++....++++|..++.++
T Consensus 481 c~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 481 CYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 87655555555789999999999999999999999999865
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.024 Score=46.86 Aligned_cols=60 Identities=12% Similarity=-0.017 Sum_probs=39.8
Q ss_pred HHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHc
Q 012879 38 LHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKV 103 (454)
Q Consensus 38 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 103 (454)
...+...|++++|++.|+.+......+.. .....-.++.++-+.|+++.|...++..++.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPY------APQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556778888888888888732222211 3455667777788888888888888887764
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0058 Score=45.63 Aligned_cols=54 Identities=11% Similarity=0.172 Sum_probs=45.2
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG 358 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (454)
....|+..+..+++.+|+..|++..|.++.+.+.+.++++.+..+|..|++-..
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 346788899999999999999999999999999998888888888888876444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.045 Score=45.63 Aligned_cols=175 Identities=13% Similarity=0.083 Sum_probs=90.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcCC-C---hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVERK-N---LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 321 (454)
+-.-+..-.+.|++++|.+.|+.+....| + ..+--.++.++.+.++++.|+..+++....-......-|...|.++
T Consensus 37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 33344455667888888888888877655 2 2344445566777888888888888876643222223333334333
Q ss_pred hc-------CCChH---HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHH--HHHHHH
Q 012879 322 SH-------GGLVE---EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVW--RTLLGA 389 (454)
Q Consensus 322 ~~-------~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~--~~l~~~ 389 (454)
+. ..|.. .|..-|+.++.. + |+.. -..+|..-...+. |.... ..+.+-
T Consensus 117 s~~~~i~~~~rDq~~~~~A~~~f~~~i~r--y-PnS~-------------Ya~dA~~~i~~~~----d~LA~~Em~Iary 176 (254)
T COG4105 117 SYFFQIDDVTRDQSAARAAFAAFKELVQR--Y-PNSR-------------YAPDAKARIVKLN----DALAGHEMAIARY 176 (254)
T ss_pred HHhccCCccccCHHHHHHHHHHHHHHHHH--C-CCCc-------------chhhHHHHHHHHH----HHHHHHHHHHHHH
Confidence 31 12222 333334444432 1 1110 0001111000000 00000 123455
Q ss_pred HHcCCChhHHHHHHHHHHHhhcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHH
Q 012879 390 CSFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
|.+.|.+..|..-++++++.-+... +.+..+..+|.+.|-.++|...-+-+
T Consensus 177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 6677777777777777777655532 34555667777777777776665544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0095 Score=46.36 Aligned_cols=70 Identities=19% Similarity=0.304 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCcHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGLKPNRVTF 314 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~ 314 (454)
+...++..+...|++++|.++.+.+....| +...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 455566667777777777777777777666 566777777777777777777777776542 4677766543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0024 Score=56.31 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=81.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.++..+.-+|.+.+++.+|++..++.+.. ++|+...-.-..+|...|+++.|+..|+++++..|.|..+-..++.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45677888999999999999999998887 67888888899999999999999999999999999998888888887777
Q ss_pred cCCcCcH-HHHHHHHhhc
Q 012879 427 VGRFGDA-ERLRRVMDER 443 (454)
Q Consensus 427 ~g~~~~a-~~~~~~~~~~ 443 (454)
.....+. .++|..|-..
T Consensus 338 ~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 6665554 6777777653
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0007 Score=39.96 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
.++..+..+|...|++++|+++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999888877654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.036 Score=49.59 Aligned_cols=166 Identities=15% Similarity=0.089 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcC----C-ChhhHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVER----K-NLVSWTSIISGFAM---HGMGKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
.+...++-+|....+++..+++++.+...+ + ....-....-++.+ .|+.++|++++..+....-.+++.+|.
T Consensus 142 div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~g 221 (374)
T PF13281_consen 142 DIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLG 221 (374)
T ss_pred hHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHH
Confidence 344455556777777777777777766641 0 11111223334445 677777777777755544455666666
Q ss_pred HHHHHHh----c-----CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH----HHHHHH---hc------C
Q 012879 316 SVLNACS----H-----GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE----QAEKTA---LG------I 373 (454)
Q Consensus 316 ~l~~~~~----~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~------~ 373 (454)
.+.+.|- . ....++|+..|.+.-+ +.|+...--.++..+...|... +..++- .. .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe---~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE---IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc---CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 6555442 1 1235566666665443 3344322212222222333211 112211 11 1
Q ss_pred CCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 374 PSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 374 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.+...+--.+.+++.++.-.|++++|.+..++|....|+
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 111345556677888889999999999999999987543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0018 Score=58.50 Aligned_cols=101 Identities=11% Similarity=-0.051 Sum_probs=74.8
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV----VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
.+...+..+..+|.+.|++++|+..|++.....|+. .+|..+..+|...|+.++|++.++++++.. ...|..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels---n~~f~~i 149 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY---NLKFSTI 149 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---chhHHHH
Confidence 356788899999999999999999999988876664 358999999999999999999999999862 1122211
Q ss_pred HH--HHHhcCCcCcHHHHHHHHhhcccccC
Q 012879 421 YN--ILAGVGRFGDAERLRRVMDERNAFKV 448 (454)
Q Consensus 421 ~~--~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (454)
.. .+....+.++..++++...+.|....
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~g 179 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDIG 179 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCccC
Confidence 11 12233455577888888888776443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00086 Score=45.64 Aligned_cols=25 Identities=20% Similarity=0.058 Sum_probs=10.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
+..+..++...|++++|++.+++++
T Consensus 49 ~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 49 LNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444444444433
|
... |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0043 Score=48.28 Aligned_cols=69 Identities=22% Similarity=0.190 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh-----cccccCC
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE-----RNAFKVP 449 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 449 (454)
.+...++..+...|++++|+.++++++..+|.+...|..++.+|.+.|+..+|.+.++++.. .|+.|.|
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566777888999999999999999999999999999999999999999999999988754 4665544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.48 Score=46.31 Aligned_cols=143 Identities=15% Similarity=0.072 Sum_probs=94.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTAL 115 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (454)
...+-+.+.|++++|...|-+-. . -+. | ..++.-|........--.+++.+.+.|+. +...-..|
T Consensus 373 kYgd~Ly~Kgdf~~A~~qYI~tI---~-~le--~--------s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlL 437 (933)
T KOG2114|consen 373 KYGDYLYGKGDFDEATDQYIETI---G-FLE--P--------SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLL 437 (933)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHc---c-cCC--h--------HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHH
Confidence 34445667899999998887664 1 112 2 25566677777777778888888888854 55556779
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCC-chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERN-LVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALF 194 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 194 (454)
+.+|.+.++.++-.++.+...+.. .......+..+-+.+-.++|.-+-..... +... +--.+-..|++++|++.+
T Consensus 438 LncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~v---l~ille~~~ny~eAl~yi 513 (933)
T KOG2114|consen 438 LNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWV---LDILLEDLHNYEEALRYI 513 (933)
T ss_pred HHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHH---HHHHHHHhcCHHHHHHHH
Confidence 999999999998888887766321 12355666666677777777666555443 2222 222344567788888877
Q ss_pred HHH
Q 012879 195 RKM 197 (454)
Q Consensus 195 ~~~ 197 (454)
..+
T Consensus 514 ~sl 516 (933)
T KOG2114|consen 514 SSL 516 (933)
T ss_pred hcC
Confidence 655
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.46 Score=45.84 Aligned_cols=111 Identities=14% Similarity=0.167 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 390 (454)
..+.+--+.-+...|+..+|.++-.+++ -||-..|..-+.+++..+++++-+++-+..+ .+.-|.-.+.+|
T Consensus 684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk----sPIGy~PFVe~c 754 (829)
T KOG2280|consen 684 DLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK----SPIGYLPFVEAC 754 (829)
T ss_pred cCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC----CCCCchhHHHHH
Confidence 3344445555566677777777666553 2677777777778888888887777766654 255677777888
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
.+.|+.++|..++-+.-. +.....+|.+.|++.+|.++--
T Consensus 755 ~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 888888888777765321 1156777777777777766543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.57 Score=46.16 Aligned_cols=95 Identities=8% Similarity=-0.040 Sum_probs=47.0
Q ss_pred ChhHHHHHHhhCCC-CCch-hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcc
Q 012879 124 FLKDSSKLFDEMPE-RNLV-TWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACE 201 (454)
Q Consensus 124 ~~~~a~~~~~~~~~-~~~~-~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 201 (454)
..++....+++-.. |-.. .-...+..+.+.+++.....++..- ..+...-.....+....|+.++|....+.+-..+
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 34555555544432 2221 1223344555677777777633222 2344444556666777777776766666654431
Q ss_pred CCCCChhhHHhHHHHHHccC
Q 012879 202 YTEPSEITILAVLPAIWQNG 221 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~ 221 (454)
. ..+.....++..+.+.|
T Consensus 160 ~--~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 160 K--SLPNACDKLFSVWQQSG 177 (644)
T ss_pred C--CCChHHHHHHHHHHHcC
Confidence 2 22334444444444333
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.005 Score=51.59 Aligned_cols=57 Identities=11% Similarity=0.012 Sum_probs=26.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCC---CCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGY---GGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
|..++...|++++|..+|..+.+..|.+ +..+..++.+..+.|+.++|..+|+++.+
T Consensus 184 LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 184 LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444455555555554444444442 22344444444455555555555544444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0006 Score=37.43 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=29.7
Q ss_pred HHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHH
Q 012879 403 TRKILEMERGYGGDYVLMYNILAGVGRFGDAE 434 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (454)
++++++..|.++.+|..++.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68899999999999999999999999999886
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0046 Score=45.13 Aligned_cols=91 Identities=12% Similarity=0.024 Sum_probs=47.0
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcH----hHHHHHHHHHHcCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDV----VVWRTLLGACSFHG 394 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~----~~~~~l~~~~~~~g 394 (454)
+....|+.+.|++.|...... .+-....||.-..++.-.|+.++|++-+++..+. .+.. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 344556666666666655532 2233455666666666666666666655555444 1111 22333333455556
Q ss_pred ChhHHHHHHHHHHHhhcC
Q 012879 395 NVEMGERVTRKILEMERG 412 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~ 412 (454)
+.+.|..-|+.+-+.|..
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 666666666665555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0035 Score=42.62 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
.+++.+...|...|++++|++.|++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al 32 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKAL 32 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344555555555555555555555443
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.049 Score=42.20 Aligned_cols=89 Identities=8% Similarity=-0.046 Sum_probs=46.6
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVE 328 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (454)
..-+...|++++|..+|.-+.-..| +..-|..|..++-..+++++|+..|......+. -|+..+-....++...|+.+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence 3334455666666666665555433 444444555555555666666666655443321 12333334445555566666
Q ss_pred HHHHHHHHHHH
Q 012879 329 EGLNFFDKMVE 339 (454)
Q Consensus 329 ~a~~~~~~~~~ 339 (454)
.|...|+....
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 66666665554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.08 Score=49.97 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC-CCCCcH-----HHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 280 TSIISGFAMHGMGKEAVENFGRMQKV-GLKPNR-----VTFLSVLNACSH----GGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 280 ~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~-----~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
..++....-.|+-+.+++.+.+..+. ++.-.. ..|..++..++. ..+.+.|.++++.+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence 33444444456666666666554442 122111 123333333322 45677888888888764 355555
Q ss_pred HHHH-HHHHHhcCChHHHHHHHhcCCCC-----CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH-HHHH
Q 012879 350 YGCL-IDMLGRAGRLEQAEKTALGIPSE-----ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV-LMYN 422 (454)
Q Consensus 350 ~~~l-~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~l~~ 422 (454)
|... .+.+...|++++|++.|++.... ......+--+...+...+++++|.+.|.++.+...-....|. ..+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 4433 45566788899999888876543 223345556677788888999999999998886555444544 3466
Q ss_pred HHHhcCCc-------CcHHHHHHHHhhc
Q 012879 423 ILAGVGRF-------GDAERLRRVMDER 443 (454)
Q Consensus 423 ~~~~~g~~-------~~a~~~~~~~~~~ 443 (454)
++...|+. ++|.++++++...
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 66777888 7888888777654
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.28 Score=41.28 Aligned_cols=225 Identities=16% Similarity=0.038 Sum_probs=140.8
Q ss_pred CChHHHHHHHHHHHHccCCC-CChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 185 NRSNEALALFRKMVACEYTE-PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
+....+...+...... ... .....+......+...++...+...+.........+.....+......+...+++..+.
T Consensus 37 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALEL-LPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhc-CccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 4444555555555442 111 12455566666666677777666666665542112335666667777777777788888
Q ss_pred HHHHHhhhcCCCh-hhHHHHHH-HHHhcCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 264 KLFEDISVERKNL-VSWTSIIS-GFAMHGMGKEAVENFGRMQKVGL--KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
+.+.......++. ........ .+...|+++.|...+.+...... ......+......+...++.+.+...+.....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 8888777654432 22222333 67788888888888888755221 12233333444445667888888888888876
Q ss_pred hcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 340 ECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 340 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
. ... ....+..+...+...++++.|...+.......|+ ...+..+...+...+..+.+...+.+..+..+.
T Consensus 196 ~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 L--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred h--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 4 223 3566777777888888888888888887776444 344455555555667788888888888877665
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.2 Score=47.35 Aligned_cols=127 Identities=14% Similarity=0.019 Sum_probs=58.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCChhh-----HHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCchHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPSEIT-----ILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRVLN 247 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 247 (454)
++....-.|+-+.+++.+.+..+.+++.-...+ |...+..++. ..+.+.|.++++.+.+. .|.+....-
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 344444456666666666655543222222211 2222222221 33445566666666554 342333333
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVER-----KNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.-.+.+...|++++|++.|++..... .....+--+.-.+.-.+++++|.+.|..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 33445555666666666666543321 11222333334445555666666666666553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.35 Score=40.67 Aligned_cols=223 Identities=17% Similarity=0.035 Sum_probs=161.2
Q ss_pred cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh--c-CCChhhHHHHHHHHHhcCChhHHH
Q 012879 220 NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV--E-RKNLVSWTSIISGFAMHGMGKEAV 296 (454)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~A~ 296 (454)
.+....+...+......................+...+++..+...+..... . ......+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 3455555555555555422111356778888889999999999999988875 2 345566777778888888999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHH-HHhcCCChHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 297 ENFGRMQKVGLKPNRVTFLSVLN-ACSHGGLVEEGLNFFDKMVEECEV--LPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
..+.........+ ......... .+...|+++.+...+...... .- ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999988754443 122222223 688899999999999998542 21 123344444555577889999999999998
Q ss_pred CCCCCc--HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 374 PSEITD--VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 374 ~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
....++ ...+..+...+...++++.|...+.......+.....+......+...|..+++...+.+.....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 887444 67788888899999999999999999999888745556666666667777888888887776543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.037 Score=41.83 Aligned_cols=88 Identities=14% Similarity=0.001 Sum_probs=57.0
Q ss_pred HHHhcCChHHHHHHHhcCCCCCC----cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc-HHHHHHH--HHhcC
Q 012879 356 MLGRAGRLEQAEKTALGIPSEIT----DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD-YVLMYNI--LAGVG 428 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~g 428 (454)
...+.|++++|.+.|+.+....| ...+--.++.+|.+.|++++|...+++.+++.|.++.+ |.....+ +.+..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 34567778888887777777633 23455667788888888888888888888888885532 3333333 33333
Q ss_pred C---------------cCcHHHHHHHHhhc
Q 012879 429 R---------------FGDAERLRRVMDER 443 (454)
Q Consensus 429 ~---------------~~~a~~~~~~~~~~ 443 (454)
. ...|...|+++++.
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 2 44566666666554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.14 Score=44.31 Aligned_cols=149 Identities=8% Similarity=-0.046 Sum_probs=69.8
Q ss_pred cCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCcHHHHHHHHHHHhcCCChHHHH
Q 012879 256 CGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV---GLKPNRVTFLSVLNACSHGGLVEEGL 331 (454)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~ 331 (454)
.|+..+|-..++++.+..| |...++-.=.+|...|+...-...+++.... +++..+..-..+.-++...|-+++|+
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAE 195 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAE 195 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHH
Confidence 4455555555555555544 5555555555566666665555555555432 11111112222223344556666666
Q ss_pred HHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-C-Cc---HhHHHHHHHHHHcCCChhHHHHHHHHH
Q 012879 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-I-TD---VVVWRTLLGACSFHGNVEMGERVTRKI 406 (454)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~ 406 (454)
+.-++..+- -+.|.-.-.+....+.-.|+..++.++..+-.+. . .+ ...|-...-.+...+.++.|+++|++-
T Consensus 196 k~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 196 KQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 655555432 1123333344555555556666666655554433 1 00 112222233344445666666666543
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.18 Score=41.68 Aligned_cols=89 Identities=11% Similarity=0.070 Sum_probs=50.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc------CCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE------RKNL-VSWTSIISGFAMHGMGKEAVENFGRMQKVG---LKPNRVTF 314 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~ 314 (454)
.+......+.+...+.+|-..|.+-... -++. ..|-..|-.+...+++..|...++.--+.+ -.-+..+.
T Consensus 152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l 231 (308)
T KOG1585|consen 152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL 231 (308)
T ss_pred HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence 3444555666666776666655543322 1221 234445555666677888888877643321 12345677
Q ss_pred HHHHHHHhcCCChHHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFF 334 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~ 334 (454)
..|+.+| ..|+.+++.++.
T Consensus 232 enLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 232 ENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHh-ccCCHHHHHHHH
Confidence 7777776 456766665543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.72 Score=43.45 Aligned_cols=381 Identities=11% Similarity=0.063 Sum_probs=216.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChh-hHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCch
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSF-TYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVY 110 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 110 (454)
..|+.+|.---...+.+.+..++..+. ..- | -.. -|.....-=.+.|..+.+.++|+..+. |++.+..
T Consensus 46 ~~wt~li~~~~~~~~~~~~r~~y~~fL---~ky----P---l~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~Svd 114 (577)
T KOG1258|consen 46 DAWTTLIQENDSIEDVDALREVYDIFL---SKY----P---LCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVD 114 (577)
T ss_pred cchHHHHhccCchhHHHHHHHHHHHHH---hhC----c---cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHH
Confidence 345555544444444455666666665 211 3 333 233344444567778888888888766 4666777
Q ss_pred hHHHHHHHHH-hCCChhHHHHHHhhCCC------CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHH-
Q 012879 111 VNTALVNMYV-SLGFLKDSSKLFDEMPE------RNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYT- 182 (454)
Q Consensus 111 ~~~~l~~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~- 182 (454)
.|......+. ..|+.+.....|+.... .+..-|...|..-..++++.....+++++.+-....++..-.-|.
T Consensus 115 lW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 115 LWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ 194 (577)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 7776666554 44677777777777654 345567777777778888888888888877533332222222221
Q ss_pred --hc------CChHHHHHHHHHHHH-------------------ccCCCCChhh--HHhHHH-------HHHccCchhHH
Q 012879 183 --RM------NRSNEALALFRKMVA-------------------CEYTEPSEIT--ILAVLP-------AIWQNGDVKSC 226 (454)
Q Consensus 183 --~~------~~~~~a~~~~~~~~~-------------------~~~~~~~~~~--~~~l~~-------~~~~~~~~~~a 226 (454)
+. ...+++.++-..... .-+.+.+..+ .+.+.. .+-..-.....
T Consensus 195 ~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 195 LLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 11 112222222211110 0011111111 111111 11111122222
Q ss_pred HHHHHhhhhcC------CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CCChhhHHHHHHHHHhcCChhHHHHHH
Q 012879 227 QLIHGYGEKRG------FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RKNLVSWTSIISGFAMHGMGKEAVENF 299 (454)
Q Consensus 227 ~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 299 (454)
...++.-.++. ..+.+...|...+..-.+.|+.+.+.-+|++..-. ..-...|-..+.-....|+.+.|..++
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 33333333321 22234567888888889999999999999987762 112234444555455558999888888
Q ss_pred HHHHhCCC--CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh-hHHHHHHHHHHhcCChHHHH---HHHhcC
Q 012879 300 GRMQKVGL--KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI-KHYGCLIDMLGRAGRLEQAE---KTALGI 373 (454)
Q Consensus 300 ~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~ 373 (454)
....+-.+ .|....+.+.+ +-..|+++.|..+++.+... . |+. ..-..-+....+.|..+.+. +++...
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 77666433 33333343333 34468999999999999886 3 553 22233345566788888887 555554
Q ss_pred CCCCCcHhHHHHHHH-----HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 374 PSEITDVVVWRTLLG-----ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 374 ~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
....-+......+.- .+.-.++.+.|..++.++.+..|.+...|..++......+
T Consensus 430 ~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 430 YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 443222222222222 2334679999999999999999998888888888776665
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.088 Score=38.80 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=71.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.-.|..++..++..+.... .+..-+|.+|--....-+-+-..+.++.+-+-+.+.+- .-...++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3457777777777776653 23444555553333333434444455544332111111 111234444444433
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
+.......+..+..+|+-+.-.++..++...+..+++....++.+|.+.|+..++.+++++.-+.|++
T Consensus 85 ------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 ------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 23344555666777777777777777776655556667777888888888888888888887777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.18 Score=47.64 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=12.4
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 012879 284 SGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.+|.+.|+-.+|..+++++..
T Consensus 825 kAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhh
Confidence 345556666666666666544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.25 Score=44.38 Aligned_cols=166 Identities=10% Similarity=-0.029 Sum_probs=104.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHhc---CCChHHHHHHHHHHHHhcCCCCChhHHH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVG---LKPNRVTFLSVLNACSH---GGLVEEGLNFFDKMVEECEVLPDIKHYG 351 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 351 (454)
+...++-+|....+++..+++++.+.... +.-+...--...-++.+ .|+.++|.+++..+... .-.+++.+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 33455567888999999999999998741 11122222233445566 89999999999996555 6667888888
Q ss_pred HHHHHHHh---------cCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCC-hh---HHHHHH----HHHHHhhcC--
Q 012879 352 CLIDMLGR---------AGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGN-VE---MGERVT----RKILEMERG-- 412 (454)
Q Consensus 352 ~l~~~~~~---------~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~----~~~~~~~~~-- 412 (454)
.+.+.|-. ....++|.+.|.+.-...|+..+=-.++..+...|. .+ +..++- ..+.+.+..
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 87776642 234788999999877764543322122222222332 22 222222 111122211
Q ss_pred --CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 413 --YGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 413 --~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+-..+.+++.+..-.|+.+.|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 33345578888999999999999999998763
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0072 Score=53.42 Aligned_cols=66 Identities=11% Similarity=-0.008 Sum_probs=61.0
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 380 VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
..++..+.-+|.+.+++..|++..+++++.+|.|....+.-+.++...|.++.|+..|+++.+...
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 446778888999999999999999999999999999999999999999999999999999988654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.036 Score=41.39 Aligned_cols=93 Identities=10% Similarity=-0.027 Sum_probs=67.3
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCC-------CCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHH
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHS-------HSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISK 102 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 102 (454)
|..++..+|-++++.|+.+....+.+..-.+...+ ....|..|+..+..+++.+++..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 45688899999999999999999998765322222 11112234888888888888888888888888888765
Q ss_pred -cCCCCCchhHHHHHHHHHhC
Q 012879 103 -VGFQSHVYVNTALVNMYVSL 122 (454)
Q Consensus 103 -~~~~~~~~~~~~l~~~~~~~ 122 (454)
.+++.+..+|..|++-....
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHh
Confidence 56666777888887755443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.34 Score=41.42 Aligned_cols=145 Identities=14% Similarity=0.087 Sum_probs=67.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
...|++.+|..+|....+.... +...-..+..+|...|+.+.|..++..+-.. --.........-+..+.+.....+.
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCCCH
Confidence 3445555555555555443211 2233344455555555555555555554321 0001111111222333333333333
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCcHHHHHHHHHhcCCcCcH
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 433 (454)
..+-.+....+-|...-..+...+...|+.+.|.+.+-.++..+.. +...-..++..+.-.|.-+.+
T Consensus 223 ~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 223 QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 3333333333124444555566666666666666666666655444 455555666666666644443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.44 Score=39.45 Aligned_cols=205 Identities=15% Similarity=0.063 Sum_probs=121.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.|..-..+|-...++++|...+.+..+ +...+..-| .. ....+.|.-+.+++.+. +.-...++.-...
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~--~yEnnrslf-hA------AKayEqaamLake~~kl---sEvvdl~eKAs~l 100 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASK--GYENNRSLF-HA------AKAYEQAAMLAKELSKL---SEVVDLYEKASEL 100 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--HHHhcccHH-HH------HHHHHHHHHHHHHHHHh---HHHHHHHHHHHHH
Confidence 345556677788888888887777765 222222111 11 22345555666666553 2245567777888
Q ss_pred HHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---C--CCCcHHHHHHHHHHHhcCCCh
Q 012879 253 YAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV---G--LKPNRVTFLSVLNACSHGGLV 327 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~--~~p~~~~~~~l~~~~~~~~~~ 327 (454)
|..+|..+.|-..+++..+ ...+-++++|+++|++.... + .+--...+...-+.+.+...+
T Consensus 101 Y~E~GspdtAAmaleKAak--------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 101 YVECGSPDTAAMALEKAAK--------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKF 166 (308)
T ss_pred HHHhCCcchHHHHHHHHHH--------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHh
Confidence 8888888888777776655 23345566777776664431 1 011122344455566677777
Q ss_pred HHHHHHHHHHHHh---cCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----CCcHhHHHHHHHHHHcCCChhH
Q 012879 328 EEGLNFFDKMVEE---CEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-----ITDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 328 ~~a~~~~~~~~~~---~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~l~~~~~~~g~~~~ 398 (454)
++|-..+..-... ..--++ -..|-..|-.|.-..++..|...++.-.+. ..+..+...|+.+| ..||.+.
T Consensus 167 ~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~ 245 (308)
T KOG1585|consen 167 TEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEE 245 (308)
T ss_pred hHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHH
Confidence 7776655443211 011122 233455555667778999999999984444 33567888888887 5678877
Q ss_pred HHHHHH
Q 012879 399 GERVTR 404 (454)
Q Consensus 399 A~~~~~ 404 (454)
+..++.
T Consensus 246 ~~kvl~ 251 (308)
T KOG1585|consen 246 IKKVLS 251 (308)
T ss_pred HHHHHc
Confidence 766554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.11 Score=47.35 Aligned_cols=67 Identities=15% Similarity=0.001 Sum_probs=42.5
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.|.+...++.+..+|.+.|++++|+..|++..+..|+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34456666666666666666666666666666665543 23666666666666666666666666653
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.61 Score=40.81 Aligned_cols=17 Identities=6% Similarity=-0.267 Sum_probs=9.7
Q ss_pred HHcCCChhHHHHHHHHH
Q 012879 390 CSFHGNVEMGERVTRKI 406 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~ 406 (454)
+.+.++++.|.+.++-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 44556666666666543
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.33 Score=37.33 Aligned_cols=84 Identities=12% Similarity=0.023 Sum_probs=36.0
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHH
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEF 158 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 158 (454)
.++..+...+.+.....+++.+...+ +.+...++.++..|++.+ .++....+.. ..+......+++.|.+.+-+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444444444444444444444443 234444444554444432 2222233321 1223333344444555555555
Q ss_pred HHHHHhhC
Q 012879 159 ARSLFEEM 166 (454)
Q Consensus 159 A~~~~~~~ 166 (454)
+.-++.++
T Consensus 88 ~~~l~~k~ 95 (140)
T smart00299 88 AVELYKKD 95 (140)
T ss_pred HHHHHHhh
Confidence 55555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.29 Score=45.59 Aligned_cols=157 Identities=14% Similarity=0.032 Sum_probs=90.6
Q ss_pred HHHHhcCCHHHHHHHHh--hCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 148 TGLVKWGELEFARSLFE--EMP-CRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 148 ~~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
....-.++++++.++.+ ++. .-.....+.+++.+.+.|.++.|+++..+-.. -.....+.|+++
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 33445667777544443 111 11234467777777777888877776544322 233445667777
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.|.++.+.. .++..|..|.+...+.|+++-|++.|.+... |..|+-.|.-.|+.+.-.++.+....
T Consensus 336 ~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 336 IALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 776665432 2566788888888888888888888887766 66777777777877777777766665
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
.|- ++....++.-.|+.++..+++.+.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 542 333444444557777777666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.062 Score=45.24 Aligned_cols=99 Identities=13% Similarity=0.069 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---hhhHHhHHHHHHccCchhHHHHHHHhhhhcC-CCCchHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---EITILAVLPAIWQNGDVKSCQLIHGYGEKRG-FTAFDIRVLNCL 249 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l 249 (454)
|+.-+. +.+.|++..|...|...++. .|-+ ...+-.|..++...|+++.|..+|..+.+.- -.|.-+..+..|
T Consensus 145 Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALD-LYKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 444433 34556677777777777763 2222 2334455555566666665555555555431 111223455555
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
..+..+.|+.++|..+|+++.+.-|+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 55555666666666666665555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.34 Score=45.17 Aligned_cols=160 Identities=13% Similarity=0.132 Sum_probs=95.7
Q ss_pred HHHHhccCCcchHhHHHHHHH-HcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHH
Q 012879 81 IRTCATLSHPNLGTQLHAVIS-KVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFA 159 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A 159 (454)
.+...-.++++.+.++.+.-. -..++ ..-.+.++..+-+.|..+.|+++-..- ..-.....+.|+++.|
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A 337 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDP--------DHRFELALQLGNLDIA 337 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------HHHHHHHHHCT-HHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCCh--------HHHhHHHHhcCCHHHH
Confidence 344455677777666654111 11122 344777888888888888888765431 3345556788888888
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCC
Q 012879 160 RSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFT 239 (454)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 239 (454)
.++.++.. +...|..|.....+.|+++-|.+.|.+..+ +..|+-.|.-.|+.+...++.+.....|.
T Consensus 338 ~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 338 LEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 88777665 566888888888888888888888877654 45556666677777777777666665542
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDI 269 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 269 (454)
++....++.-.|+.++..+++.+.
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 334444455556776666666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.0083 Score=47.48 Aligned_cols=102 Identities=15% Similarity=0.024 Sum_probs=62.8
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
-+.+.|++++|..-|......+.-.+. ...|..-..++.+.+.++.|++-..+.++..|+ ......-..+|-+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 466778888888888887765222221 223344445666777777777777777666332 2333444556777777
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
+++|++-++++++.+|....+....+
T Consensus 184 ~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 184 YEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 77777777777777776544433333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.098 Score=45.70 Aligned_cols=166 Identities=10% Similarity=0.061 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC----chHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA----FDIRV 245 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 245 (454)
.|..+.+++-+.-++.+++.+-..-...+|..|. .....++..++.-.+.++++.+.|+...+..... ....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444445555555555555555544443333331 1223334444555555555555555544421111 12345
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc----C-CChh-hHH-----HHHHHHHhcCChhHHHHHHHHHHh----CCCCCc
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVE----R-KNLV-SWT-----SIISGFAMHGMGKEAVENFGRMQK----VGLKPN 310 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~-~~~-----~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p~ 310 (454)
+..|...|.+..++++|.-+..+..+. . .|.. -|. .|.-++...|..-.|.+.-++..+ .|-.|.
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 666666677767766666555544332 1 1111 122 233345556666666666555432 333322
Q ss_pred -HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 311 -RVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 311 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
......+.+.|...|+.+.|+.-|+...
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1233455566667777777766666544
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.056 Score=49.25 Aligned_cols=160 Identities=11% Similarity=0.044 Sum_probs=104.5
Q ss_pred hhH--HHHHHHHHhc-----CChhHHHHHHHHHHh-CCCCCc-HHHHHHHHHHHhc---------CCChHHHHHHHHHHH
Q 012879 277 VSW--TSIISGFAMH-----GMGKEAVENFGRMQK-VGLKPN-RVTFLSVLNACSH---------GGLVEEGLNFFDKMV 338 (454)
Q Consensus 277 ~~~--~~l~~~~~~~-----g~~~~A~~~~~~m~~-~~~~p~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 338 (454)
..| ...+.+.... ...+.|..+|.+... +.+.|+ ...|..+..++.. ..+..+|.+..+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555554432 245678888998872 234554 3455555544432 123445666666666
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 339 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
+. -+.|......+..+..-.|+++.|...|++.....|| ..+|......+.-.|+.++|.+.++++++..|.-...-
T Consensus 332 el--d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 DI--TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred hc--CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 53 2346677777777778888899999999998888665 45677777777788999999999999999988744332
Q ss_pred --HHHHHHHHhcCCcCcHHHHHHH
Q 012879 418 --VLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 418 --~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
...++.|+.. ..++|++++-+
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHHhh
Confidence 2334455544 46667777644
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.15 Score=44.57 Aligned_cols=123 Identities=12% Similarity=0.031 Sum_probs=55.8
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCC----CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----C-CcH------h
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVL----PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE----I-TDV------V 381 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-p~~------~ 381 (454)
+..++...+.++++.+.|+...+--.-. ....++..|...|.+..++++|.-+..+..+. . .|. .
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 3344444555555555555544320101 11234555555555555655555444333222 0 111 1
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCc----HHHHHHHHHhcCCcCcHHHHHHH
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGD----YVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~----~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
+...+..++...|..-+|.+..+++.+.... |..+ ...++++|...|+.+.|..-+++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 1223334555556666666655555444322 2222 22455566666666555554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.72 Score=37.52 Aligned_cols=180 Identities=9% Similarity=-0.042 Sum_probs=98.8
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-hhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
+..|.-=|.+... +.|.-+.+||-|.-.+...|+++.|.+.|+...+..|.- .+...-.-++.-.|++.-|.+-+..
T Consensus 81 ~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 81 RALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred HHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 3333333444433 356677888888888889999999999999888865521 1211112233446788888776666
Q ss_pred HHhCC-CCCcHHHHHHHHHHHhcCCChHHHHHH-HHHHHHhcCCCCChhHHHH-HHHHHHhcCChHHHHHHHhcCCCC--
Q 012879 302 MQKVG-LKPNRVTFLSVLNACSHGGLVEEGLNF-FDKMVEECEVLPDIKHYGC-LIDMLGRAGRLEQAEKTALGIPSE-- 376 (454)
Q Consensus 302 m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~-- 376 (454)
.-+.. -.|=...|--+. ...-++.+|..- .++..+ .|..-|.. ++..|...=..+.+.+-...-...
T Consensus 159 fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~-----~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~ 230 (297)
T COG4785 159 FYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEK-----SDKEQWGWNIVEFYLGKISEETLMERLKADATDNT 230 (297)
T ss_pred HHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHh-----ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchH
Confidence 55432 122222222222 223456666543 333332 23333432 333333222222222222222211
Q ss_pred ---CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 377 ---ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 377 ---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
..-..||-.|.+-+...|+.++|..+|+-++....-
T Consensus 231 ~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 231 SLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 112357788888899999999999999988875543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.59 Score=36.50 Aligned_cols=122 Identities=11% Similarity=0.079 Sum_probs=53.6
Q ss_pred ccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHH---HHH--HHHhcCChh
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTS---IIS--GFAMHGMGK 293 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---l~~--~~~~~g~~~ 293 (454)
+.++.++|..-|..+.+.|.-.................|+...|...|+++....|.+....- |=. .+..+|.++
T Consensus 70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~ 149 (221)
T COG4649 70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD 149 (221)
T ss_pred HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence 344445555555555554433222222233333444555555555555555544222222211 111 223455555
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
......+.+-..+-+--...-..|.-+-.+.|++..|.+.|..+...
T Consensus 150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 55555544443332222222333434444555666666655555543
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.92 E-value=1.4 Score=40.76 Aligned_cols=60 Identities=13% Similarity=0.171 Sum_probs=34.0
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPS 375 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 375 (454)
.+..++-+.|+.++|++.++++.+.+.......+...|++++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 344455566666666666666665422222334455666666666666666666666543
|
The molecular function of this protein is uncertain. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.97 Score=38.77 Aligned_cols=142 Identities=10% Similarity=0.073 Sum_probs=67.2
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh--hhHHHHHHHHHhcCChh
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL--VSWTSIISGFAMHGMGK 293 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 293 (454)
.....|+...+...+...... .|.+......++.+|...|+.+.|..++..+.....+. .....-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 344556666666666666554 33345555666666666677777766666665542211 11122233333333333
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
+...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+...---|...-..+++.+.-.|
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333333322 113334444455555566666665544444433111123334444444444444
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.1 Score=39.21 Aligned_cols=19 Identities=5% Similarity=-0.059 Sum_probs=12.0
Q ss_pred HHHHHhcCCcCcHHHHHHH
Q 012879 421 YNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~ 439 (454)
+..+.+.+++++|.+.++-
T Consensus 253 ~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 253 GKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHhhcCHHHHHHHHHH
Confidence 4445566777777776653
|
It is also involved in sporulation []. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.49 Score=35.07 Aligned_cols=66 Identities=12% Similarity=0.105 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 012879 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV 343 (454)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (454)
.......+..+...|+-++-.+++.++.+. -.+++.....+..+|.+.|+..++.+++.++.+. |+
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek-G~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEK-GL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-T-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh-ch
Confidence 334455566667777777777777776643 2556666667777777777777777777777665 54
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=1.2 Score=38.90 Aligned_cols=32 Identities=13% Similarity=0.082 Sum_probs=13.6
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSEITDVVVWR 384 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 384 (454)
..+.++...|.. +|...+..+....||..+-.
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~ 271 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLYKFDDNEIIT 271 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHH
Confidence 344444444443 34444444443333443333
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.7 Score=40.32 Aligned_cols=169 Identities=12% Similarity=-0.028 Sum_probs=77.1
Q ss_pred CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHH
Q 012879 202 YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTS 281 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 281 (454)
..+.|.....+++..+....++.-++.+..++..-|- +...+..++.+|... ..+.-..+++++.+..-|......
T Consensus 61 ~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e---~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~R 136 (711)
T COG1747 61 KQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE---SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGR 136 (711)
T ss_pred hccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcc---hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHH
Confidence 3345555555556666555555555556665555431 444555555555555 334445555555554333333332
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC--c---HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKP--N---RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM 356 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (454)
-+..+...++...+..+|.+....=++- + ...|..+...- ..+.+....+...+.+..|...-...+.-+..-
T Consensus 137 eLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~ 214 (711)
T COG1747 137 ELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKK 214 (711)
T ss_pred HHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 2222222355555555555544331110 0 11233333211 234444444444444443433333444444444
Q ss_pred HHhcCChHHHHHHHhcCCCC
Q 012879 357 LGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 357 ~~~~g~~~~A~~~~~~~~~~ 376 (454)
|....++++|++++..+.+.
T Consensus 215 Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 215 YSENENWTEAIRILKHILEH 234 (711)
T ss_pred hccccCHHHHHHHHHHHhhh
Confidence 55555555555555544443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.67 Score=35.61 Aligned_cols=124 Identities=9% Similarity=0.090 Sum_probs=86.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChH
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (454)
...++..+...+.......+++.+.. .+...++.++..|++.+ .++..+.++. ..+......+++.|.+.+.++
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHH
Confidence 34577777777888888888888764 34567888999998764 4555666663 234555666888888999999
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHcc-CchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQN-GDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK 255 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (454)
++..++.++.. +...+..+... ++++.|.++..... ++..|..++..+..
T Consensus 87 ~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~lw~~~~~~~l~ 137 (140)
T smart00299 87 EAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQN-------NPELWAEVLKALLD 137 (140)
T ss_pred HHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhCC-------CHHHHHHHHHHHHc
Confidence 99999988733 22334444444 78888888877632 55677777777654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.6 Score=39.80 Aligned_cols=150 Identities=11% Similarity=0.020 Sum_probs=72.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC---cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC--hhH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP---NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD--IKH 349 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~ 349 (454)
...+|..++..+.+.|.++.|...+.++...+..+ ++.....-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 34456667777777777777777777766543111 2223333344455567777777777776662 11111 111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcC------CChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFH------GNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
...+...... ..+.....-..-.....-..++..+..-.... ++.+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000000000000122333333333333 778888888888888888766677777666
Q ss_pred HHhc
Q 012879 424 LAGV 427 (454)
Q Consensus 424 ~~~~ 427 (454)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6544
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=95.60 E-value=2.7 Score=41.62 Aligned_cols=60 Identities=12% Similarity=0.161 Sum_probs=34.5
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcC----CCCcHH-----HHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERG----YGGDYV-----LMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+++.+...+. .|+..+.............. ....|. .+...+...|+.++|.+...+...
T Consensus 537 ~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 537 LLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 3444444444 67777766665555443322 233442 344456778999999888777643
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.45 Score=36.09 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=29.9
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERK----NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.....+.|++++|.+.|+.+...-| ...+--.++.+|.+.|++++|...+++.++.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344455566666666666555532 2233444555556666666666666665554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=1.5 Score=38.30 Aligned_cols=154 Identities=13% Similarity=0.046 Sum_probs=89.4
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc--CCCCchHHHHHHHHHHHHhcCChh
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR--GFTAFDIRVLNCLIDTYAKCGCIF 260 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~ 260 (454)
..|+..+|...++++.+ ..|.|...+...=.+|...|+.+.-...++++... ...|-...+...+..++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45667777777777776 55666666666666777777777666666666543 111222333344555566777777
Q ss_pred HHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 261 SASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV---GLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 261 ~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
+|++.-++..+..+ |.-.-.+....+-..|++.++.++..+-... +--.-...|-...-.+...+.++.|+.+|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 77777777776544 5556666666677777777777766543321 1000111222222234455777777777765
Q ss_pred HH
Q 012879 337 MV 338 (454)
Q Consensus 337 ~~ 338 (454)
-.
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.04 Score=30.00 Aligned_cols=33 Identities=27% Similarity=0.230 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
..|..+...+...|++++|++.++++++..|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677888888888888888888888887753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.055 Score=41.85 Aligned_cols=129 Identities=12% Similarity=0.096 Sum_probs=89.3
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHH
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEF 158 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 158 (454)
.+++.+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... ......++..|.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---NYDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---SS-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---ccCHHHHHHHHHhcchHHH
Confidence 5678888899999999999999987766778899999999999998899888888433 2445567778888888888
Q ss_pred HHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc
Q 012879 159 ARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD 222 (454)
Q Consensus 159 A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (454)
|.-++.++...+.. +..+...++++.|.+...+ .++...|..+++.+...++
T Consensus 89 a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~-------~~~~~l~~~l~~~~l~~~~ 140 (143)
T PF00637_consen 89 AVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKK-------VDDPELWEQLLKYCLDSKP 140 (143)
T ss_dssp HHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGG-------CSSSHHHHHHHHHHCTSTC
T ss_pred HHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHh-------cCcHHHHHHHHHHHHhcCc
Confidence 88888877642211 1113344555555532221 3456677777777766554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.053 Score=31.81 Aligned_cols=41 Identities=17% Similarity=0.173 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHH
Q 012879 32 QLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLI 81 (454)
Q Consensus 32 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~ 81 (454)
.+|..+...|.+.|++++|.++|+++. +..+. |...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l---~~~P~------~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRAL---ALDPD------DPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH---HHCcC------CHHHHHHhh
Confidence 568889999999999999999999999 66655 666666554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.11 Score=38.25 Aligned_cols=89 Identities=17% Similarity=0.061 Sum_probs=42.9
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCC
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD--IKHYGCLIDMLGRAGR 362 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 362 (454)
++...|+.+.|++.|.+.+.. .+-....||.-..++.-.|+.++|.+-+++..+..|-+.. -..|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 344555666666666655553 1224455566666665556666666555555544222211 1112222223444555
Q ss_pred hHHHHHHHhcCC
Q 012879 363 LEQAEKTALGIP 374 (454)
Q Consensus 363 ~~~A~~~~~~~~ 374 (454)
-+.|..-|+...
T Consensus 131 dd~AR~DFe~AA 142 (175)
T KOG4555|consen 131 DDAARADFEAAA 142 (175)
T ss_pred hHHHHHhHHHHH
Confidence 555555555433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.2 Score=42.29 Aligned_cols=99 Identities=18% Similarity=0.256 Sum_probs=61.4
Q ss_pred HHHHHhhhcCCChhhHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC-------------
Q 012879 264 KLFEDISVERKNLVSWTSIISGFAM-----HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG------------- 325 (454)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------------- 325 (454)
+.|..+.....|-.+|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+-.
T Consensus 55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~H 134 (406)
T KOG3941|consen 55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLH 134 (406)
T ss_pred hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhh
Confidence 3344444333455566666655543 2445555556666777777777777777777654321
Q ss_pred ---ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 326 ---LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 326 ---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
+-+-+++++++|... |+-||-.+-..|+++|.+.|-.
T Consensus 135 YP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 135 YPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred CchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 223467777777665 8888877777778877776653
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=2.1 Score=39.44 Aligned_cols=147 Identities=12% Similarity=-0.020 Sum_probs=81.8
Q ss_pred hhHHHHHHHhhhh-cCCCCchHHHHHHHHHHHHhc---------CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC
Q 012879 223 VKSCQLIHGYGEK-RGFTAFDIRVLNCLIDTYAKC---------GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM 291 (454)
Q Consensus 223 ~~~a~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 291 (454)
.+.|..+|.+... +...|.....|..+..++... ....+|.++-++..+..| |......+..+....++
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~ 353 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ 353 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 4566777777772 123444456666555554422 234556666666666544 66666666666666777
Q ss_pred hhHHHHHHHHHHhCCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 012879 292 GKEAVENFGRMQKVGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTA 370 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 370 (454)
++.|..+|++....+ || ..+|......+.-.|+.++|.+.+++..+.........+....++.|+. ...++|..++
T Consensus 354 ~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 430 (458)
T PRK11906 354 AKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLY 430 (458)
T ss_pred hhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHH
Confidence 778888887777643 33 2333333333445677778877777765432222223333334445554 3455666655
Q ss_pred hc
Q 012879 371 LG 372 (454)
Q Consensus 371 ~~ 372 (454)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 44
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.054 Score=29.51 Aligned_cols=32 Identities=19% Similarity=0.166 Sum_probs=25.9
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.+|..+..+|...|++++|+..++++++..|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888889999999999998888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=95.22 E-value=2.3 Score=38.64 Aligned_cols=64 Identities=11% Similarity=0.159 Sum_probs=41.5
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC----CCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKILEMERG----YGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
...+|..+...+.+.|+++.|...+.++....+. .+......+..+...|+..+|...++...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4456666677777777777777777776654422 334445566667777777777777766665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.3 Score=41.96 Aligned_cols=79 Identities=14% Similarity=0.257 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCcHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGLKPNRVTFL 315 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~ 315 (454)
-..++..++..+...|+++.+...++++....| +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 456778889999999999999999999988877 788999999999999999999999988765 58888877766
Q ss_pred HHHHH
Q 012879 316 SVLNA 320 (454)
Q Consensus 316 ~l~~~ 320 (454)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=3.7 Score=40.67 Aligned_cols=80 Identities=5% Similarity=-0.151 Sum_probs=44.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc---CCCCcHHHHHHHHHhcCCc
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER---GYGGDYVLMYNILAGVGRF 430 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 430 (454)
+..+...|....|...+..+... .+......+.......|.++.++.........+. ..+..|...+..+.+.-.+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v 492 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI 492 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence 34455677877887777766554 3444555555555677777777776655433211 1233455555555444445
Q ss_pred CcHH
Q 012879 431 GDAE 434 (454)
Q Consensus 431 ~~a~ 434 (454)
+.+.
T Consensus 493 ~~~l 496 (644)
T PRK11619 493 PQSY 496 (644)
T ss_pred CHHH
Confidence 4443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.076 Score=45.47 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+..++..+...|+.+.+.+.++++.+.+|.+.+.|..++.+|.+.|+...|++.++++.+
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444444444444444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.14 E-value=1.1 Score=41.34 Aligned_cols=62 Identities=11% Similarity=0.049 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
..+..++.+.|+.++|++.|+++.+.............|+.++...+.+.++..++.+-.+.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi 324 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDI 324 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccc
Confidence 34566667778888888888888764111122345667777777777777777777776544
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.3 Score=34.47 Aligned_cols=52 Identities=13% Similarity=0.084 Sum_probs=27.7
Q ss_pred HhcCChhHHHHHHHHhhhcCCChhhHHHH-HHHHHhcCChhHHHHHHHHHHhC
Q 012879 254 AKCGCIFSASKLFEDISVERKNLVSWTSI-ISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.+.++.+++..++..+...+|.......+ ...+...|++.+|+.+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34556666666666665555543332222 23345566666666666665544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.4 Score=34.46 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=7.8
Q ss_pred cCCcchHhHHHHHHHHcC
Q 012879 87 LSHPNLGTQLHAVISKVG 104 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~ 104 (454)
.+..++|+.-|..+.+.|
T Consensus 71 ~~k~d~Alaaf~~lektg 88 (221)
T COG4649 71 ENKTDDALAAFTDLEKTG 88 (221)
T ss_pred cCCchHHHHHHHHHHhcC
Confidence 333444444444444433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.062 Score=29.83 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=19.2
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
+|..|...|.+.|++++|++++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3566777777778888888888775543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.63 E-value=1.3 Score=35.49 Aligned_cols=95 Identities=18% Similarity=0.128 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh------hHHH
Q 012879 280 TSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI------KHYG 351 (454)
Q Consensus 280 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~ 351 (454)
..+...|.+.|+.+.|.+.|.++.+....|.. ..+-.+|+.....+++..+.....++........|. .+|.
T Consensus 40 ~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~ 119 (177)
T PF10602_consen 40 EDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYE 119 (177)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 33444444444444444444444443222221 223334444444455555555544444321111111 1122
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+ .+...+++.+|-+.|-+....
T Consensus 120 gL--~~l~~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 120 GL--ANLAQRDFKEAAELFLDSLST 142 (177)
T ss_pred HH--HHHHhchHHHHHHHHHccCcC
Confidence 22 123456676666666555443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.62 E-value=4.2 Score=38.60 Aligned_cols=127 Identities=14% Similarity=0.178 Sum_probs=84.4
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHH
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITG 149 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~ 149 (454)
+...+..++.---.....+.+..++..++.. .|.--.-|......=.+.|..+.+.++|++-.. .+...|...+..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f 122 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAF 122 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 4556666666444444556666677766643 232333556666666678889999999998775 344556655554
Q ss_pred HH-hcCCHHHHHHHHhhCCC------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 012879 150 LV-KWGELEFARSLFEEMPC------RNVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200 (454)
Q Consensus 150 ~~-~~~~~~~A~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (454)
+. ..|+.+...+.|++... .+...|...+..-..++++.....+|++.++.
T Consensus 123 ~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 123 LKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 43 45677777777776653 34556777777778888889999999888874
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.61 E-value=4.9 Score=39.29 Aligned_cols=316 Identities=11% Similarity=-0.007 Sum_probs=169.2
Q ss_pred cCCCCCchhHH-----HHHHHHHhCCChhHHHHHHhhCCCCC---chhHHHHHHHHHhcC---CHHHHHHHHhhCCC--C
Q 012879 103 VGFQSHVYVNT-----ALVNMYVSLGFLKDSSKLFDEMPERN---LVTWNVMITGLVKWG---ELEFARSLFEEMPC--R 169 (454)
Q Consensus 103 ~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~---~~~~A~~~~~~~~~--~ 169 (454)
.|++.+..-|. .+++-+...+.+..|+++-..+..|. ..+|......+.+.. +-+-+..+-+++.. .
T Consensus 426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 45555444333 34555666677777777777776654 455555555555552 23334444444544 3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCC---CChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTE---PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL 246 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (454)
...+|..+.+.....|+++-|..+++.-...+... .+..-+...+.-+...||.+....++-.+...- +...+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~----~~s~l 581 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL----NRSSL 581 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH----HHHHH
Confidence 44567777777777777777777765432221100 111223334444444555554444444443320 11111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHH-HHHHH----hCCCCCcHHHHHHHHHHH
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN-FGRMQ----KVGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~----~~~~~p~~~~~~~l~~~~ 321 (454)
+....+...|..+|.+..... |. ..+-+.|....+..++-.+ ++... ..|..|+.. ....++
T Consensus 582 ------~~~l~~~p~a~~lY~~~~r~~-~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk---~~a~~~ 648 (829)
T KOG2280|consen 582 ------FMTLRNQPLALSLYRQFMRHQ-DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALK---TAANAF 648 (829)
T ss_pred ------HHHHHhchhhhHHHHHHHHhh-ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHH---HHHHHH
Confidence 111123344444444443320 00 0111122222222222111 11100 112233322 233333
Q ss_pred hcCCC----------hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHH
Q 012879 322 SHGGL----------VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACS 391 (454)
Q Consensus 322 ~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~ 391 (454)
.+... ..+-+++.+.+..+++..-..-+.+--+.-+...|+..+|.++-.+.+- ||-..|..-+.+++
T Consensus 649 a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki--pdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 649 AKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI--PDKRLWWLKLTALA 726 (829)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC--cchhhHHHHHHHHH
Confidence 33222 2233344455555445444444555566677889999999999888765 79999999999999
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
..+++++-+++.+.. ..|--|.-...++.+.|+.++|.+++-+...
T Consensus 727 ~~~kweeLekfAksk-----ksPIGy~PFVe~c~~~~n~~EA~KYiprv~~ 772 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSK-----KSPIGYLPFVEACLKQGNKDEAKKYIPRVGG 772 (829)
T ss_pred hhhhHHHHHHHHhcc-----CCCCCchhHHHHHHhcccHHHHhhhhhccCC
Confidence 999998877766643 2466788899999999999999998876543
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.61 E-value=6.5 Score=40.69 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=53.8
Q ss_pred HHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHH
Q 012879 150 LVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLI 229 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 229 (454)
--+.|.+..|+.++.-=.+.-...|.+....+...+.+++|.-+|+..-+ ..-.+.+|...|+|.+|..+
T Consensus 918 I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~ 987 (1265)
T KOG1920|consen 918 IKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSL 987 (1265)
T ss_pred HHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHH
Confidence 33444444444443322222223444444555556666666666655422 12345566666666666666
Q ss_pred HHhhhhcCCCCchHH--HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 230 HGYGEKRGFTAFDIR--VLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
..++.... +.. +-..|+.-+...++.-+|-++..+..+
T Consensus 988 a~ql~~~~----de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 988 AAQLSEGK----DELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhhcCCH----HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 65554321 111 124555556666666666666555444
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.3 Score=34.18 Aligned_cols=114 Identities=11% Similarity=0.033 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHH--HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHH-----HHHHHHHHhcCChHHH
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLS--VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHY-----GCLIDMLGRAGRLEQA 366 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g~~~~A 366 (454)
+.....+++......-...++.. +...+...|++++|...++..... |....+ -.|.+.....|.+++|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 45555555555422212222222 335677889999999988887743 222233 3355667788999999
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
+..++......-.......-.+.+...|+-++|..-|+++++.++
T Consensus 146 L~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 146 LKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccC
Confidence 999998877522334455667889999999999999999998763
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.9 Score=35.22 Aligned_cols=175 Identities=13% Similarity=0.068 Sum_probs=83.9
Q ss_pred HccCchhHHHHHHHhhhhcC-CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh--hhHHHHHHHHHh------
Q 012879 218 WQNGDVKSCQLIHGYGEKRG-FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL--VSWTSIISGFAM------ 288 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~------ 288 (454)
.+.|++++|...|+.+..+- ..|....+.-.++.++.+.++++.|+..+++.....|+. ..|-.-|.+++.
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~ 124 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDD 124 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCc
Confidence 35566666666666665441 122244556666777777888888888777777664421 223333333321
Q ss_pred -cCChhHHHH---HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 289 -HGMGKEAVE---NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 289 -~g~~~~A~~---~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
..+...+.. -|+++++. -||+ .-...|...+..+... + ...=..+.+-|.+.|.+.
T Consensus 125 ~~rDq~~~~~A~~~f~~~i~r--yPnS-------------~Ya~dA~~~i~~~~d~--L---A~~Em~IaryY~kr~~~~ 184 (254)
T COG4105 125 VTRDQSAARAAFAAFKELVQR--YPNS-------------RYAPDAKARIVKLNDA--L---AGHEMAIARYYLKRGAYV 184 (254)
T ss_pred cccCHHHHHHHHHHHHHHHHH--CCCC-------------cchhhHHHHHHHHHHH--H---HHHHHHHHHHHHHhcChH
Confidence 123333333 33333332 2222 1111222222222111 0 000023445566666666
Q ss_pred HHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 365 QAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 365 ~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.|..-++++.+..|+ ...+-.+..+|...|-.++|...-+-+....|+
T Consensus 185 AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 185 AAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 666666666655222 234455566677777776666655544443333
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.14 E-value=6.7 Score=38.96 Aligned_cols=117 Identities=11% Similarity=0.124 Sum_probs=82.1
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTAL 115 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 115 (454)
.++.-|....+...-...++.+. +.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~---~~gla------~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~a 469 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALH---KKGLA------NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETA 469 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHH---Hcccc------cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHH
Confidence 35666777777777778888888 88887 77778899999999999888777655443 2321 2224556
Q ss_pred HHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012879 116 VNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC 168 (454)
Q Consensus 116 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 168 (454)
+..+.+.+-.++|..+-..... .......+ +-..+++++|++++..++-
T Consensus 470 l~Ilr~snyl~~a~~LA~k~~~-he~vl~il---le~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 470 LEILRKSNYLDEAELLATKFKK-HEWVLDIL---LEDLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHHHHhChHHHHHHHHHHhcc-CHHHHHHH---HHHhcCHHHHHHHHhcCCH
Confidence 7777788888888776655443 33333333 4467899999999999873
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.02 E-value=3.3 Score=35.04 Aligned_cols=223 Identities=15% Similarity=0.122 Sum_probs=118.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc----cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH----HHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVAC----EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI----RVL 246 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 246 (454)
..++....+.|++++....|.++..- -.-.-+..+.+.++.......+.+....+++.-.+.--...+. .+-
T Consensus 69 KQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTN 148 (440)
T KOG1464|consen 69 KQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTN 148 (440)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeecc
Confidence 34555666666666666666665421 0112234455666665555555555555444332210000011 233
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhc-----CC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCcHH
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVE-----RK--------NLVSWTSIISGFAMHGMGKEAVENFGRMQK-VGLKPNRV 312 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~ 312 (454)
+.|...|...|.+.+..++++++.+. +. =...|..=|+.|....+-.+-..++++... ..--|.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPl 228 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPL 228 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchH
Confidence 56777888888888888888887665 11 124677778888888887777888887654 22344444
Q ss_pred HHHHHHHHH-----hcCCChHHHHHHHHHHHHhcCC--CCCh---hHHHHHHHHHHhcCChHHHHHHHhc--CCCC--CC
Q 012879 313 TFLSVLNAC-----SHGGLVEEGLNFFDKMVEECEV--LPDI---KHYGCLIDMLGRAGRLEQAEKTALG--IPSE--IT 378 (454)
Q Consensus 313 ~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~--~p 378 (454)
... +|+-| .+.|.+++|-.-|-++.+.+.- .|.. .-|..|...+.+.|-- =|+. ++.- .|
T Consensus 229 ImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdP 302 (440)
T KOG1464|consen 229 IMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDP 302 (440)
T ss_pred HHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCH
Confidence 443 34433 4567888776544444333221 1222 2244555666555410 1111 1111 46
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
.......|+.+|... ++.+-++++.
T Consensus 303 EIlAMTnlv~aYQ~N-dI~eFE~Il~ 327 (440)
T KOG1464|consen 303 EILAMTNLVAAYQNN-DIIEFERILK 327 (440)
T ss_pred HHHHHHHHHHHHhcc-cHHHHHHHHH
Confidence 667778888888543 4444444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.11 Score=45.12 Aligned_cols=94 Identities=15% Similarity=0.047 Sum_probs=71.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGN 395 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~ 395 (454)
.+-|.++|.+++|+..|...... .| +++++..-..+|.+..++..|+.-.+..... ..-...|+.-+.+-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~---~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV---YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc---CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 45688899999999999887753 44 7777878888899999998888777766554 1224456666666667788
Q ss_pred hhHHHHHHHHHHHhhcCCC
Q 012879 396 VEMGERVTRKILEMERGYG 414 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~ 414 (454)
..+|.+-++.++++.|.+.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8899999999999888754
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.74 E-value=3.2 Score=33.94 Aligned_cols=29 Identities=10% Similarity=0.031 Sum_probs=19.0
Q ss_pred hhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
.||--+.+.+...|+.+.|..+|+-.+..
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 35666666666666666666666666655
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.4 Score=32.38 Aligned_cols=51 Identities=8% Similarity=-0.149 Sum_probs=23.5
Q ss_pred cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 220 NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 220 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.++++.+..++..+.-. .|.....-..-...+...|++++|.++|+++.+.
T Consensus 23 ~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 44444444444444433 2323333333333445555555555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.5 Score=35.20 Aligned_cols=97 Identities=18% Similarity=0.107 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCcHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERK----NLVSWTSIISGFAMHGMGKEAVENFGRMQKV---GLKPNRVTFL 315 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~ 315 (454)
...+..+.+.|++.|+.+.|.+.|.++.+... -...+-.+|......+++..+...+.+.... |-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45677888899999999999999998877522 2235667777788888888888888776542 2222222111
Q ss_pred HHHH--HHhcCCChHHHHHHHHHHHH
Q 012879 316 SVLN--ACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 316 ~l~~--~~~~~~~~~~a~~~~~~~~~ 339 (454)
.... .+...+++..|-+.|-....
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHccCc
Confidence 1111 23346788888887776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.62 Score=37.35 Aligned_cols=92 Identities=13% Similarity=0.041 Sum_probs=51.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHH
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNR-----VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDML 357 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~ 357 (454)
.-+.+.|++++|..-|.+.+.. +++.. ..|..-..++.+.+.++.|+.-....++. .|+ ......-..+|
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel---~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL---NPTYEKALERRAEAY 178 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc---CchhHHHHHHHHHHH
Confidence 3456677777777777777664 22222 23333344556666676666665555543 232 22222334466
Q ss_pred HhcCChHHHHHHHhcCCCCCCc
Q 012879 358 GRAGRLEQAEKTALGIPSEITD 379 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~~p~ 379 (454)
.+...+++|++-|.++....|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 6777777777777776666443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.2 Score=27.11 Aligned_cols=31 Identities=19% Similarity=0.144 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+|..+...|...|++++|.+.|++.++..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667778888888888888888888887763
|
... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.61 E-value=2.9 Score=32.97 Aligned_cols=99 Identities=10% Similarity=0.130 Sum_probs=60.4
Q ss_pred HHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhc--CCHHHHHHHHhhCCCCCcc
Q 012879 95 QLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKW--GELEFARSLFEEMPCRNVV 172 (454)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~--~~~~~A~~~~~~~~~~~~~ 172 (454)
+++..+.+.+++|+...+..+++.+.+.|++.....++..-.=+|.......+-.+... .-..-|.+.+.++. .
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----T 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----h
Confidence 44455556777788888888888888888877777766654444443333222222111 11344555555554 2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
.+..++..+...|++-+|+++.++.
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 4556677788888888888887765
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=93.57 E-value=8.9 Score=38.46 Aligned_cols=219 Identities=12% Similarity=-0.003 Sum_probs=112.3
Q ss_pred HccCchhHHHHHHHhhhhcCCCC---ch---HHHHHHHH-HHHHhcCChhHHHHHHHHhhhc------CCChhhHHHHHH
Q 012879 218 WQNGDVKSCQLIHGYGEKRGFTA---FD---IRVLNCLI-DTYAKCGCIFSASKLFEDISVE------RKNLVSWTSIIS 284 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~---~~---~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~l~~ 284 (454)
....++++|..+..++...-..| .. ...++.|- ......|++++|.++-+..... .+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 44556666666666655431111 01 11223222 2233467788888877766555 234556677777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHH---HHH--HHHhcCCC--hHHHHHHHHHHHHhcCC-C----CChhHHHH
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFL---SVL--NACSHGGL--VEEGLNFFDKMVEECEV-L----PDIKHYGC 352 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~---~l~--~~~~~~~~--~~~a~~~~~~~~~~~~~-~----~~~~~~~~ 352 (454)
+..-.|++++|..+..+..+..-.-+...+. .+. ..+...|. ..+....|......... + +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 7778889998888877765532122332222 221 23445562 33333344433332111 1 11233444
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC----CCcH--h--HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC--CCcHHHH--
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE----ITDV--V--VWRTLLGACSFHGNVEMGERVTRKILEMERGY--GGDYVLM-- 420 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~----~p~~--~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l-- 420 (454)
+..++.+ .+.+..-....... .|.. . .+..|+......|+.++|...++++....... ...|...
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 4444544 44443333322222 2322 2 22367778888999999999999988766553 2222211
Q ss_pred ---HHHHHhcCCcCcHHHHHHH
Q 012879 421 ---YNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 421 ---~~~~~~~g~~~~a~~~~~~ 439 (454)
.......|+.+.+...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 1122345777777666655
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.43 E-value=2.9 Score=32.50 Aligned_cols=72 Identities=7% Similarity=-0.146 Sum_probs=48.1
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHh
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAM 288 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (454)
..-...++.+.+..++..+.-. .|..+..-..-...+...|++.+|.++|+++....|....-..|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 3345677888888888877775 45455555555666777888888888888877765555545555555544
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.36 E-value=6.9 Score=36.56 Aligned_cols=176 Identities=14% Similarity=0.123 Sum_probs=115.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
|-....+++..+..+..+.-+..+..+|..- ..+...|..++.+|... ..++-..+|+++.+..+. |...-..|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~---~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--Dvv~~ReL 138 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY---GESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--DVVIGREL 138 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHh---cchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--hHHHHHHH
Confidence 4455667788888888888888888888865 35667788888888877 667778888888886432 45555556
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc-CC---Ch---hhHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCcHHHHHHHHHHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVE-RK---NL---VSWTSIISGFAMHGMGKEAVENFGRMQK-VGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~-~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~ 321 (454)
+..|-+ ++.+.+..+|.++... -| +. ..|.-+...- ..+.+....+..++.. .|..--...+.-+-.-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666655 7888888888877654 11 11 2444444322 3456666666666654 34344455566666777
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM 356 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (454)
....++++|++++..+.+. -..|...-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~--d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEH--DEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhh--cchhhhHHHHHHHH
Confidence 8888888888888888764 23344444444443
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.33 E-value=0.17 Score=28.00 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.8
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHH
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQ 58 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~ 58 (454)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 57889999999999999999999955
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=93.24 E-value=12 Score=39.07 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=18.9
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHH
Q 012879 136 PERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGY 181 (454)
Q Consensus 136 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~ 181 (454)
..+|..+-...+..+.+.+..+....+...+..++...-...+.++
T Consensus 631 ~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL 676 (897)
T PRK13800 631 ADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGL 676 (897)
T ss_pred cCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444444444455554444433333333333334433333333333
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.14 Score=28.01 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=16.7
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|.++..|+.+..+|...|++++|+
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 4556667777777777777766664
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.85 E-value=0.28 Score=28.04 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcC
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTH 63 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 63 (454)
..+++.+...|...|++++|..++++...+.+.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 467899999999999999999999998855443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.84 E-value=4.9 Score=33.39 Aligned_cols=100 Identities=7% Similarity=0.063 Sum_probs=55.1
Q ss_pred HHHHHhcC-CChHHHHHHHHHHHHhcCC-CCChh---HHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHH---HH
Q 012879 317 VLNACSHG-GLVEEGLNFFDKMVEECEV-LPDIK---HYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWR---TL 386 (454)
Q Consensus 317 l~~~~~~~-~~~~~a~~~~~~~~~~~~~-~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~---~l 386 (454)
+...|-.. .++++|+..|+..-+-+.- ..+.. .+-.....-...+++.+|+.+|+++... ..+..-|. .+
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf 198 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF 198 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence 34444333 5677777777776553221 11222 2222333345678889999999886654 11222221 12
Q ss_pred HH---HHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 387 LG---ACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 387 ~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
+. ++....|.-.+...+++..+..|.-..+
T Consensus 199 lkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 199 LKAGLCHLCKADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHhHhcccHHHHHHHHHHHHhcCCccccc
Confidence 21 2233467777888888888888884443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.75 E-value=6.3 Score=34.46 Aligned_cols=230 Identities=13% Similarity=0.009 Sum_probs=114.4
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCH----HHHHHHHhhC--CCCCcchHHHHHHHH
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGEL----EFARSLFEEM--PCRNVVSWTGIIDGY 181 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~l~~~~ 181 (454)
|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. +++...+..+ .+++..+-...+.++
T Consensus 36 d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aL 115 (280)
T PRK09687 36 NSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINAT 115 (280)
T ss_pred CHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 3344444444444444322222222222234444444445555555542 3455555543 234444444444444
Q ss_pred HhcCCh-----HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 182 TRMNRS-----NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 182 ~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
...+.. ..+...+..... .++..+-...+.++.+.++. .+...+-.+.+. + +..+-...+.++.+.
T Consensus 116 G~~~~~~~~~~~~a~~~l~~~~~----D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~-~~~VR~~A~~aLg~~ 186 (280)
T PRK09687 116 GHRCKKNPLYSPKIVEQSQITAF----DKSTNVRFAVAFALSVINDE-AAIPLLINLLKD---P-NGDVRNWAAFALNSN 186 (280)
T ss_pred hcccccccccchHHHHHHHHHhh----CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---C-CHHHHHHHHHHHhcC
Confidence 433221 223333333322 23555555666666666653 344444444442 2 445555555555554
Q ss_pred C-ChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHH
Q 012879 257 G-CIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFD 335 (454)
Q Consensus 257 g-~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~ 335 (454)
+ ....+...+..+.. .++..+-...+.++.+.|+ ..|+..+-+..+.+. .....+.++...|+. +|...+.
T Consensus 187 ~~~~~~~~~~L~~~L~-D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~ 258 (280)
T PRK09687 187 KYDNPDIREAFVAMLQ-DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLD 258 (280)
T ss_pred CCCCHHHHHHHHHHhc-CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHH
Confidence 3 23345555555443 2566667777777777776 455555555555432 234566777777775 6777777
Q ss_pred HHHHhcCCCCChhHHHHHHHHH
Q 012879 336 KMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 336 ~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
.+.+. .||..+-...+.++
T Consensus 259 ~l~~~---~~d~~v~~~a~~a~ 277 (280)
T PRK09687 259 TLLYK---FDDNEIITKAIDKL 277 (280)
T ss_pred HHHhh---CCChhHHHHHHHHH
Confidence 77653 34655555444443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.61 E-value=2.1 Score=40.56 Aligned_cols=150 Identities=17% Similarity=0.065 Sum_probs=78.1
Q ss_pred HhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHH
Q 012879 151 VKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIH 230 (454)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 230 (454)
.-.|+++.|..++..+.+ ...+.+++.+.++|-.++|+++- +|+.. -.....+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHHHH
Confidence 345666666665555542 23344556666666666665432 22111 112233456666665554
Q ss_pred HhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 231 GYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
.+.. +..-|..|.++....|++..|.+.|.+... |..|+-.+...|+.+....+-....+.|.. |
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N 725 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD-------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N 725 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc-------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c
Confidence 4321 445566666666666777666666666554 455555555566655555555444444422 1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
....++...|+++++.+++..
T Consensus 726 -----~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 -----LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -----hHHHHHHHcCCHHHHHHHHHh
Confidence 122234455666666655544
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.57 E-value=6.2 Score=33.95 Aligned_cols=61 Identities=15% Similarity=0.043 Sum_probs=52.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
++......|...|.+.+|.++.++++..+|-+...+..+...+...|+--.|.+-++.+.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455667889999999999999999999999999999999999999998888777766643
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.47 E-value=1.2 Score=37.79 Aligned_cols=88 Identities=10% Similarity=0.097 Sum_probs=52.0
Q ss_pred CCcchHHHHHHHHHh-----cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHcc----------------CchhHHH
Q 012879 169 RNVVSWTGIIDGYTR-----MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQN----------------GDVKSCQ 227 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~ 227 (454)
+|-.+|...+..+.. .+.++-....++.|.+- |+.-|..+|..|+..+-+. .+-+-++
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~ey-GVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEY-GVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHh-cchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 344444444444332 23444444455555555 6666666666666655332 2234467
Q ss_pred HHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 228 LIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
.++++|...|+.| |..+-..|++++.+.+-
T Consensus 144 ~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 144 KVLEQMEWHGVMP-DKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHHHcCCCC-chHHHHHHHHHhccccc
Confidence 7888888888776 77788888888876654
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.35 E-value=0.33 Score=42.21 Aligned_cols=93 Identities=14% Similarity=0.087 Sum_probs=63.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
..-|.+.|.+++|++.|...... .| |.+++..-..+|.+...+..|+.-....... . ..-...|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-d-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-D-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-h-HHHHHHHHHHHHHHHHHh
Confidence 45688999999999999987764 45 8888888888999999988887766666543 1 011233444444444456
Q ss_pred ChHHHHHHHhcCCCCCCc
Q 012879 362 RLEQAEKTALGIPSEITD 379 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p~ 379 (454)
...+|.+-++......|+
T Consensus 180 ~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPK 197 (536)
T ss_pred hHHHHHHhHHHHHhhCcc
Confidence 666666666666655555
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.34 E-value=0.32 Score=37.51 Aligned_cols=131 Identities=9% Similarity=0.125 Sum_probs=85.0
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHH
Q 012879 35 NTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTA 114 (454)
Q Consensus 35 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (454)
..+++.+.+.+.+.....+++.+. ..+.. . +....+.++..|++.++.+...++++. .+..-...
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~---~~~~~--~---~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~ 75 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALV---KENKE--N---NPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDK 75 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHH---HTSTC------SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHH---hcccc--c---CHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHH
Confidence 456788888999999999999998 55544 3 788899999999999888888887761 12233345
Q ss_pred HHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCCh
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRS 187 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 187 (454)
++..|.+.|.++++.-++.++...+.. +..+...++++.|.+.+.+. ++...|..++..+...+..
T Consensus 76 ~~~~c~~~~l~~~a~~Ly~~~~~~~~a-----l~i~~~~~~~~~a~e~~~~~--~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 76 ALRLCEKHGLYEEAVYLYSKLGNHDEA-----LEILHKLKDYEEAIEYAKKV--DDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHTTTSHHHHHHHHHCCTTHTTC-----SSTSSSTHCSCCCTTTGGGC--SSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHhcchHHHHHHHHHHcccHHHH-----HHHHHHHccHHHHHHHHHhc--CcHHHHHHHHHHHHhcCcc
Confidence 777778888888887777665331110 00122334444444333333 4567788888887766543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=92.32 E-value=4.6 Score=31.86 Aligned_cols=127 Identities=13% Similarity=0.009 Sum_probs=83.4
Q ss_pred cCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCch
Q 012879 62 THSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLV 141 (454)
Q Consensus 62 ~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 141 (454)
..+.. | +...|..+++.+.+.|++... ..++..++-+|.......+-.+. +....+.++=-.|..+=..
T Consensus 22 ~~~i~--~---~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 22 QHNIP--V---QHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HcCCC--C---CHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHhhh
Confidence 77777 7 889999999999999976544 44466677777655444332222 2233333333333332233
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 012879 142 TWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 142 ~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
.+..++..+...|++-+|.++.+.....+......++.+..+.+|..-=..+|+-...
T Consensus 91 ~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 91 AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5667788899999999999999887655555556677777777776655555554443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.11 E-value=6.7 Score=33.30 Aligned_cols=267 Identities=8% Similarity=0.015 Sum_probs=158.3
Q ss_pred ChhhHHHHHHHH-hccCCcchHhHHHHHHHHcCCC---CCchhHHHHHHHHHhCCChhHHHHHHhhCCC---------CC
Q 012879 73 DSFTYSFLIRTC-ATLSHPNLGTQLHAVISKVGFQ---SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---------RN 139 (454)
Q Consensus 73 ~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~ 139 (454)
|+..=|..-.+- .+..++++|+.-|+++++..-. ..-...-.++..+.+.|++++....+.++.. -+
T Consensus 25 dVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNyS 104 (440)
T KOG1464|consen 25 DVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYS 104 (440)
T ss_pred CcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhcccc
Confidence 665544443332 2344788999999988874211 2233556678889999999999998888763 24
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCc----chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC----
Q 012879 140 LVTWNVMITGLVKWGELEFARSLFEEMPC-----RNV----VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---- 206 (454)
Q Consensus 140 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---- 206 (454)
..+.|+++.......+.+.-.++++.-.+ .|. .|-+.+...|...|.+.+..++++++.++ ....|
T Consensus 105 EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~S-Cq~edGedD 183 (440)
T KOG1464|consen 105 EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQS-CQTEDGEDD 183 (440)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHH-hccccCchh
Confidence 45677777776666666655555544321 222 24456778888888888888888887653 11111
Q ss_pred -------hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH----HHHHHhcCChhHHHHHHHHhhhc---
Q 012879 207 -------EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL----IDTYAKCGCIFSASKLFEDISVE--- 272 (454)
Q Consensus 207 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~~--- 272 (454)
...|..=+..|....+-.+...++++........|.+.+...+ .....+.|.+++|-.-|-+.-+.
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDE 263 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDE 263 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccc
Confidence 1357777777877777777778888776544334455554433 23455678888876544444332
Q ss_pred --CCCh---hhHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 012879 273 --RKNL---VSWTSIISGFAMHG----MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV 343 (454)
Q Consensus 273 --~~~~---~~~~~l~~~~~~~g----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (454)
.|-- .-|-.+...+.+.| +..+| .-..-.|.....+.++.+|- .++..+-.+++..-.. .+
T Consensus 264 sGspRRttCLKYLVLANMLmkS~iNPFDsQEA-------KPyKNdPEIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~--~I 333 (440)
T KOG1464|consen 264 SGSPRRTTCLKYLVLANMLMKSGINPFDSQEA-------KPYKNDPEILAMTNLVAAYQ-NNDIIEFERILKSNRS--NI 333 (440)
T ss_pred cCCcchhHHHHHHHHHHHHHHcCCCCCccccc-------CCCCCCHHHHHHHHHHHHHh-cccHHHHHHHHHhhhc--cc
Confidence 2221 22445555555544 11111 11122456667788888884 4566666666555433 44
Q ss_pred CCChhHH
Q 012879 344 LPDIKHY 350 (454)
Q Consensus 344 ~~~~~~~ 350 (454)
-.|+..-
T Consensus 334 M~DpFIR 340 (440)
T KOG1464|consen 334 MDDPFIR 340 (440)
T ss_pred cccHHHH
Confidence 4455443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.44 Score=25.75 Aligned_cols=28 Identities=14% Similarity=0.051 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
+|..+..+|...|++++|+..|++..+.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 3444444455555555555555444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.04 E-value=0.45 Score=25.64 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+..+..+|...|++++|++.|++..+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3444555555555555555555555443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=91.65 E-value=2 Score=39.41 Aligned_cols=125 Identities=18% Similarity=0.132 Sum_probs=74.9
Q ss_pred HHhcCChhHHHH-HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 286 FAMHGMGKEAVE-NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 286 ~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
-...|+...|-+ ++.-+....-.|+.....+.| +...|+++.+.+.+....+ -+.....+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHH
Confidence 334566655544 444444443345544443333 4566778877777776654 33445566677777777778888
Q ss_pred HHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 365 QAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 365 ~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
+|...-+.|... ..++.+...........|-++++...|+++....|+..
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 887777777665 23333333333344455677777777777777766633
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.41 E-value=15 Score=37.48 Aligned_cols=86 Identities=15% Similarity=0.035 Sum_probs=48.9
Q ss_pred HHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHHcC--------CChhHHHHH--HHH---HHHhh----cC----
Q 012879 356 MLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACSFH--------GNVEMGERV--TRK---ILEME----RG---- 412 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~--------g~~~~A~~~--~~~---~~~~~----~~---- 412 (454)
.|......+-+..+++.+... .++....+.++..|+.. ++-+++.+. -++ +++.. |+
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l~~s~~Y~p~~~L~ 679 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFLESSDLYDPQLLLE 679 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHhhhhcccCcchhhh
Confidence 355666777777777776655 44555666666666432 122334333 111 22111 11
Q ss_pred ---CCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 413 ---YGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 413 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
....|...+-.+.+.|+.++|+.++-...
T Consensus 680 ~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L 711 (877)
T KOG2063|consen 680 RLNGDELYEERAILLGRLGKHEEALHIYVHEL 711 (877)
T ss_pred hccchhHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 12356666777778999999998875543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.24 E-value=2.2 Score=30.04 Aligned_cols=61 Identities=13% Similarity=0.245 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 293 KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 293 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++...+- ....|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence 356666666667777888888888888888888888888888888775443 2336666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.03 E-value=10 Score=33.39 Aligned_cols=48 Identities=23% Similarity=0.250 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHc--cCc----hhHHHHHHHhhhhc
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQ--NGD----VKSCQLIHGYGEKR 236 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~----~~~a~~~~~~~~~~ 236 (454)
++.+.+++.+.+. |+.-+..+|.+..-.... ..+ ...+..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~-gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEA-GFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHh-ccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3455666777766 666666665543333322 111 23445555555553
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.00 E-value=2 Score=29.93 Aligned_cols=63 Identities=14% Similarity=0.275 Sum_probs=44.0
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
+.-++.+-++.+....+.|++....+.+++|.+.+|+..|.++++.++..++. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 44456666666666677888888888888888888888888888887754332 3445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.96 E-value=1.1 Score=34.08 Aligned_cols=84 Identities=17% Similarity=0.056 Sum_probs=48.3
Q ss_pred hhHHHHHHHHH---HhcCChHHHHHHHhcCCCCCCcHhHHH-HHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 347 IKHYGCLIDML---GRAGRLEQAEKTALGIPSEITDVVVWR-TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 347 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
..+.+.|++.. ...++++++..+++.+.-..|+..-.. .-...+...|++++|+++|+++.+..+..+..-..++.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~ 86 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLAL 86 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHH
Confidence 33444554443 346788888887777766544433222 22344667888888888888877655544333334444
Q ss_pred HHHhcCCc
Q 012879 423 ILAGVGRF 430 (454)
Q Consensus 423 ~~~~~g~~ 430 (454)
++.-.|+.
T Consensus 87 CL~al~Dp 94 (153)
T TIGR02561 87 CLNAKGDA 94 (153)
T ss_pred HHHhcCCh
Confidence 44444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=90.73 E-value=24 Score=36.94 Aligned_cols=112 Identities=12% Similarity=0.103 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHh
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV--TFLSVLNACS 322 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~ 322 (454)
.|.+..+.+...+.+++|--.|+..-+ ..-.+.+|...|+|.+|+.+..++... -+.. +-..|+.-+.
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 444555555566667777666665544 233456677778888888877766432 1221 1245666677
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPS 375 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 375 (454)
..++.-+|-++..+.... | ...+..|++...+++|..+......
T Consensus 1011 e~~kh~eAa~il~e~~sd----~-----~~av~ll~ka~~~~eAlrva~~~~~ 1054 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD----P-----EEAVALLCKAKEWEEALRVASKAKR 1054 (1265)
T ss_pred HcccchhHHHHHHHHhcC----H-----HHHHHHHhhHhHHHHHHHHHHhccc
Confidence 778888887777776542 2 2344556777788888877776653
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.68 E-value=19 Score=35.72 Aligned_cols=167 Identities=10% Similarity=0.108 Sum_probs=92.9
Q ss_pred HHHHhccCCcchHhHHHHHHHHcCCCC---CchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHH
Q 012879 81 IRTCATLSHPNLGTQLHAVISKVGFQS---HVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELE 157 (454)
Q Consensus 81 ~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 157 (454)
++-+.+.+.+++|+++-+.. .|..| -......++..+...|++++|-...-.|...+..-|.--+..+...++..
T Consensus 363 i~Wll~~k~yeeAl~~~k~~--~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~ 440 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKAS--IGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLT 440 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhc--cCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccc
Confidence 34455566677777665433 23333 23456677777788888888888877777777777777666666666665
Q ss_pred HHHHHHhhCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 158 FARSLFEEMPC-RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 158 ~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
....++-.-.. -++..|..++..+.. .+ . .-|.+.++ ..+++...-...+++ +-.++.+.
T Consensus 441 ~Ia~~lPt~~~rL~p~vYemvLve~L~-~~---~-~~F~e~i~--~Wp~~Lys~l~iisa------------~~~q~~q~ 501 (846)
T KOG2066|consen 441 DIAPYLPTGPPRLKPLVYEMVLVEFLA-SD---V-KGFLELIK--EWPGHLYSVLTIISA------------TEPQIKQN 501 (846)
T ss_pred hhhccCCCCCcccCchHHHHHHHHHHH-HH---H-HHHHHHHH--hCChhhhhhhHHHhh------------cchHHHhh
Confidence 54444332222 244567777776666 21 1 22222222 112222111111111 11111111
Q ss_pred CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 237 GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 237 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
.. +......|+..|...+++..|+..+-...+
T Consensus 502 --Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 502 --SE-STALLEVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred --cc-chhHHHHHHHHHHHccChHHHHHHHHhccC
Confidence 11 334445589999999999999999888766
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.53 E-value=18 Score=35.33 Aligned_cols=17 Identities=12% Similarity=0.036 Sum_probs=8.6
Q ss_pred ccCchhHHHHHHHhhhh
Q 012879 219 QNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~ 235 (454)
...|.+.|..+++.+.+
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34455555555555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.46 E-value=3.6 Score=35.70 Aligned_cols=97 Identities=11% Similarity=0.120 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC-----CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVER-----KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
+..+...++..-....++++++..+-++.... |+. +-.+.++.+. .-++++++.++..=++.|+-||.++++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHH
Confidence 44445555555555677888888777776541 221 1222333333 3367788888888888999999999999
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHh
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+++.+.+.+++.+|.++.-.|..+
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999888887765
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.14 E-value=38 Score=38.42 Aligned_cols=312 Identities=8% Similarity=-0.054 Sum_probs=172.9
Q ss_pred HHHHHHHhCCChhHHHHHHhhCC----CC--CchhHHHHHHHHHhcCCHHHHHHHHhh-CCCCCcchHHHHHHHHHhcCC
Q 012879 114 ALVNMYVSLGFLKDSSKLFDEMP----ER--NLVTWNVMITGLVKWGELEFARSLFEE-MPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~~~~----~~--~~~~~~~ll~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~ 186 (454)
.+..+-.+++.+..|...++.-. +. ...-+..+...|...+++|...-+... ...|+ ...-+......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 44455667888999999988832 11 112344444588888888887777763 33333 2334556677899
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHH
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLF 266 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 266 (454)
+..|...|+++.+. -++...+++-++......|.+.......+-..... .+.....++.-+.+--+.++++......
T Consensus 1465 ~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1465 WADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred HHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence 99999999999874 34447788888888888888888877665555441 2212223334455556777877777665
Q ss_pred HHhhhcCCChhhHHHH--HHHHHhcC--ChhHHHHHHHHHHhCCCCCc---------HHHHHHHHHHHhcCCChHHHHHH
Q 012879 267 EDISVERKNLVSWTSI--ISGFAMHG--MGKEAVENFGRMQKVGLKPN---------RVTFLSVLNACSHGGLVEEGLNF 333 (454)
Q Consensus 267 ~~~~~~~~~~~~~~~l--~~~~~~~g--~~~~A~~~~~~m~~~~~~p~---------~~~~~~l~~~~~~~~~~~~a~~~ 333 (454)
. . .+..+|... .....+.. +.-.-.+.++.+++.-+.|- ...|..++....-. +-...
T Consensus 1542 ~---~--~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----el~~~ 1612 (2382)
T KOG0890|consen 1542 S---D--RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----ELENS 1612 (2382)
T ss_pred h---c--ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----HHHHH
Confidence 5 1 344444443 23322222 21122233333333211110 12233333222111 00011
Q ss_pred HHHHHHhcCCCCChhH------HH---HHHHHHHhcCChHHHHH-HHhcCCCC----CCcHhHHHHHHHHHHcCCChhHH
Q 012879 334 FDKMVEECEVLPDIKH------YG---CLIDMLGRAGRLEQAEK-TALGIPSE----ITDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 334 ~~~~~~~~~~~~~~~~------~~---~l~~~~~~~g~~~~A~~-~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~~A 399 (454)
.+.. .+..++..+ |. ...+.+.+...+--|.+ .+...... .--..+|-...+.....|+++.|
T Consensus 1613 ~~~l---~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1613 IEEL---KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHh---hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 1111 122222111 11 11222222222222211 11111111 12356788888888889999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
...+-++.+.. .+..+.-.+..+.+.|+...|..++++..+...
T Consensus 1690 ~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1690 QNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 98888887765 566788889999999999999999998886543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.11 E-value=0.45 Score=25.38 Aligned_cols=27 Identities=7% Similarity=0.049 Sum_probs=15.0
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+..++.+.|++++|.+.|+++++.-|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 444555556666666666666555443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.07 E-value=5.2 Score=38.11 Aligned_cols=27 Identities=26% Similarity=0.137 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
.-|..|.++....|++..|.+.|....
T Consensus 667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 667 VKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred HHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 344444444444555555544444433
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.93 E-value=2 Score=34.75 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=44.2
Q ss_pred chhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcc
Q 012879 12 NITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPN 91 (454)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~ 91 (454)
+.|++.|-.+...+. .-|+...-.|..-|. ..+.++|+.++.++..+...+.. + |+..+..|+..+.+.|+++
T Consensus 123 ~~A~~~fL~~E~~~~-l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~--~---n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 123 QEALRRFLQLEGTPE-LETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDN--F---NPEILKSLASIYQKLKNYE 195 (203)
T ss_pred HHHHHHHHHHcCCCC-CCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCC--C---CHHHHHHHHHHHHHhcchh
Confidence 444444545555554 455555555555554 46667777777776644444433 4 6677777777777777666
Q ss_pred hH
Q 012879 92 LG 93 (454)
Q Consensus 92 ~a 93 (454)
.|
T Consensus 196 ~A 197 (203)
T PF11207_consen 196 QA 197 (203)
T ss_pred hh
Confidence 55
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=89.91 E-value=8.7 Score=35.56 Aligned_cols=122 Identities=8% Similarity=0.076 Sum_probs=75.2
Q ss_pred HHHHHccCchhHHHHH-HHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-CCChhhHHHHHHHHHhcCC
Q 012879 214 LPAIWQNGDVKSCQLI-HGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE-RKNLVSWTSIISGFAMHGM 291 (454)
Q Consensus 214 ~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 291 (454)
+.-....||.-.|-+- +..+... |.++.........+...|+++.+...+...... .....+..+++....+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~---~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ---QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC---CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhh
Confidence 3334455666655543 3333333 224444444445566678888888887776654 3455667778888888888
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
++.|..+-..|....++ ++..........-..|-++++...|+++..
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 88888888888776655 333333333333445677888888887764
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.70 E-value=23 Score=35.21 Aligned_cols=180 Identities=13% Similarity=0.109 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHh-ccCCcchHhHHHHHHHHcCCCCCch-----hHHHHHHHHHh
Q 012879 48 QKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA-TLSHPNLGTQLHAVISKVGFQSHVY-----VNTALVNMYVS 121 (454)
Q Consensus 48 ~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~ 121 (454)
..|++.++.+. ....- ||.....++-.+.+.+. ...+++.|+..+++.....-.++.. ....++..+.+
T Consensus 38 ~~ai~CL~~~~---~~~~l--~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~ 112 (608)
T PF10345_consen 38 ATAIKCLEAVL---KQFKL--SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK 112 (608)
T ss_pred HHHHHHHHHHh---ccCCC--CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh
Confidence 35677777776 32211 33335566667777766 6678999999999876644333322 23356677777
Q ss_pred CCChhHHHHHHhhCCC---C-Cc----hhHHHH-HHHHHhcCCHHHHHHHHhhCCC-----CC--cchHHHHHHHH--Hh
Q 012879 122 LGFLKDSSKLFDEMPE---R-NL----VTWNVM-ITGLVKWGELEFARSLFEEMPC-----RN--VVSWTGIIDGY--TR 183 (454)
Q Consensus 122 ~g~~~~a~~~~~~~~~---~-~~----~~~~~l-l~~~~~~~~~~~A~~~~~~~~~-----~~--~~~~~~l~~~~--~~ 183 (454)
.+... |...+++..+ . .. ..|..+ +..+...++...|.+.++.+.. .+ ..++-.++.+. ..
T Consensus 113 ~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~ 191 (608)
T PF10345_consen 113 TNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLR 191 (608)
T ss_pred cCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhc
Confidence 77665 8888877653 1 11 123333 2333344899999999987753 22 23334444443 34
Q ss_pred cCChHHHHHHHHHHHHcc--------CCCCChhhHHhHHHHH--HccCchhHHHHHHHhh
Q 012879 184 MNRSNEALALFRKMVACE--------YTEPSEITILAVLPAI--WQNGDVKSCQLIHGYG 233 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 233 (454)
.+.++++++.+.++.... ..+|...+|..+++.+ ...|+++.+...++.+
T Consensus 192 ~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 192 RGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 566777888777764320 1235567777777765 4667766665554444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=89.43 E-value=0.92 Score=25.76 Aligned_cols=29 Identities=21% Similarity=0.231 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.+++.+...|...|++++|..+++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46677777888888888888888877754
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=89.37 E-value=44 Score=38.00 Aligned_cols=316 Identities=10% Similarity=0.023 Sum_probs=168.6
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcCC--CCCchhHHHHHHHHHhCCChhHHHHHHhh-CCCCCchhHHHHHHHHHhcCC
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVGF--QSHVYVNTALVNMYVSLGFLKDSSKLFDE-MPERNLVTWNVMITGLVKWGE 155 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~ll~~~~~~~~ 155 (454)
.+..+--+.+.+.+|...++.-..... ......+..+...|+..+++|+...+... ...|+. ..-|-.....|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl---~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL---YQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH---HHHHHHHHhhcc
Confidence 334444566778888888887311111 11233455566699999999988887773 333332 233445667899
Q ss_pred HHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhH-HHHHHccCchhHHHHHHH
Q 012879 156 LEFARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAV-LPAIWQNGDVKSCQLIHG 231 (454)
Q Consensus 156 ~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~ 231 (454)
+..|...|+.+.+ |+ ..+++-++......|.++.++-..+-... ...+....++.+ +.+-.+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~--~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLII--NRSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhh--ccCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 9999999999986 33 56788888888888999888886665554 233333333333 345578888888877766
Q ss_pred hhhhcCCCCchHHHHHHHHHHHHhc--CChhHHHHHHHHhhhc-----------CCChhhHHHHHHHHHhcCChhHHHHH
Q 012879 232 YGEKRGFTAFDIRVLNCLIDTYAKC--GCIFSASKLFEDISVE-----------RKNLVSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
..+.. +..+. .++....+. .+.-.-.+..+.+.+. +.-...|..++..+.-.. -...
T Consensus 1543 ---~~n~e--~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~~~ 1612 (2382)
T KOG0890|consen 1543 ---DRNIE--YWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LENS 1612 (2382)
T ss_pred ---ccccc--chhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HHHH
Confidence 22111 11111 122222222 1211111233322221 000123333333322111 1111
Q ss_pred HHHHHhCCCCCcHH------HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-----ChhHHHHHHHHHHhcCChHHHH
Q 012879 299 FGRMQKVGLKPNRV------TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-----DIKHYGCLIDMLGRAGRLEQAE 367 (454)
Q Consensus 299 ~~~m~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~ 367 (454)
.+... ++.++.. -|..-+..-....+..+-+--+++..-.....| -..+|....+...++|+++.|.
T Consensus 1613 ~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1613 IEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 11111 1222211 121122111111112222212222111101122 2567778888888899999998
Q ss_pred HHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 368 KTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 368 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
..+-...+.. -+..+--..+-+...|+...|+.++++.++....
T Consensus 1691 nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1691 NALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred HHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 8776666552 3445556677888999999999999999976544
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.07 E-value=14 Score=31.96 Aligned_cols=116 Identities=12% Similarity=0.066 Sum_probs=66.7
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc-c-CchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQ-N-GDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.+.+|+++|+.....+.+--|..+...+++.... . .....-.++.+.+...-...++..+....++.+++.+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 3456666666322111345566666666666544 1 1233333444444432112226666777777777777877777
Q ss_pred HHHHHhhhc---CCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 264 KLFEDISVE---RKNLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 264 ~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
++++..... ..|...|..+|......|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 777766554 23677777777777777777665555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.72 E-value=3.9 Score=35.49 Aligned_cols=99 Identities=7% Similarity=0.046 Sum_probs=58.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVG---LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG 351 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 351 (454)
...+...++..-...++++.++..+-+++... ..|+.. -...++.|.+ -++++++.++..=+.- |+-||..++.
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irlllk-y~pq~~i~~l~npIqY-GiF~dqf~~c 139 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLLLK-YDPQKAIYTLVNPIQY-GIFPDQFTFC 139 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHHHc-cChHHHHHHHhCcchh-ccccchhhHH
Confidence 33444555555555667777777777766431 122211 1222333322 3566777776666554 7778888888
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+|+.+.+.+++.+|..+...|...
T Consensus 140 ~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 140 LLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888887777766665543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.71 E-value=11 Score=30.38 Aligned_cols=56 Identities=13% Similarity=-0.038 Sum_probs=23.3
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.......|.+++|+..++......-.......-.+.+...|+-++|..-|++.++.
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 33444445555555554444431111111222234444455555555555444443
|
|
| >PF13762 MNE1: Mitochondrial splicing apparatus component | Back alignment and domain information |
|---|
Probab=88.57 E-value=9.4 Score=29.27 Aligned_cols=89 Identities=10% Similarity=0.119 Sum_probs=69.0
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCC-cchHhHHHHHHHHcCCCCCc
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSH-PNLGTQLHAVISKVGFQSHV 109 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~ 109 (454)
....|.++......+++.-.+.+++.+..+...... ...+..+|+.++++.++... ---+..+|..+.+.+.++++
T Consensus 39 ~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~---~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~ 115 (145)
T PF13762_consen 39 TIFINCILNHLASYQNFSGVVSILEHLHFLNTDNII---GWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTP 115 (145)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHh---hhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCH
Confidence 346788998889999999999988888643222221 11277899999999977776 45578899999988889999
Q ss_pred hhHHHHHHHHHhC
Q 012879 110 YVNTALVNMYVSL 122 (454)
Q Consensus 110 ~~~~~l~~~~~~~ 122 (454)
.-|..++.++.+-
T Consensus 116 ~dy~~li~~~l~g 128 (145)
T PF13762_consen 116 SDYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHHcC
Confidence 9999999988655
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.81 Score=24.31 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=12.2
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhcCC
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
+..++.+.|++++|.+.|+++....|
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 33444444555555555555444333
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.96 E-value=5 Score=32.60 Aligned_cols=21 Identities=19% Similarity=-0.018 Sum_probs=9.0
Q ss_pred ChhhHHHHHHHHHhcCChhHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A 295 (454)
|+..+..|+..+.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 334444444444444444433
|
|
| >KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.73 E-value=20 Score=32.56 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=33.7
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCC------CCchhHHHHHHHHHhcCCHHHHHHHHhhCC
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPE------RNLVTWNVMITGLVKWGELEFARSLFEEMP 167 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~ 167 (454)
.+.-+...|..+|+++.|.+.+.+... ..+..|-.+|..-.-.|+|.....+..+..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 455566677777777777777777543 122345555555556666655555554433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.69 E-value=19 Score=31.79 Aligned_cols=130 Identities=12% Similarity=0.182 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHhc--CC----ChHHHHHHHHHHHHhcCC--CCChhHHHHHHHHHHhcCCh--
Q 012879 294 EAVENFGRMQKVGLKPNRVTFLSVLNACSH--GG----LVEEGLNFFDKMVEECEV--LPDIKHYGCLIDMLGRAGRL-- 363 (454)
Q Consensus 294 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~-- 363 (454)
+...+++.|.+.|..-+..+|-+....... .. ....|..+|+.|++.+.+ .++...+..++.. ..+++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 445566666666666665555442222221 11 234566677777665333 2333444444322 22332
Q ss_pred --HHHHHHHhcCCCC----CCcHhHHHHHHHHHHcCCC--hhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 364 --EQAEKTALGIPSE----ITDVVVWRTLLGACSFHGN--VEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 364 --~~A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
++++.+|+.+.+. ..+......++..+-.... ..++.++++.+.+.+......+...+..+.
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 3334444444442 1122333333322222211 335666666666665553333333333333
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.41 E-value=2.4 Score=36.65 Aligned_cols=63 Identities=16% Similarity=-0.029 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
..+.+-.+|.+.++++.|+.+.+.++...|+++.-+.--+-+|.+.|.+..|..-++...+..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 345566677888888888888888888888887777777888888888888888777776654
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=87.03 E-value=19 Score=31.05 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=33.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCChhh-------HHhHHHHHHccCchhHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT-------ILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~a 226 (454)
.+.+-..+.+++++|+..|.++... |+..|..+ ...+...|...|+...-
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGK-GVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcC-CCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 3556667788889999999888887 66665543 44555566666665443
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=86.48 E-value=1.4 Score=23.63 Aligned_cols=26 Identities=23% Similarity=0.140 Sum_probs=13.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhh
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISV 271 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 271 (454)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44445555555555555555555443
|
... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=86.48 E-value=15 Score=29.32 Aligned_cols=72 Identities=19% Similarity=0.118 Sum_probs=36.1
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHhcC-----------ChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHH
Q 012879 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG-----------CIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 295 (454)
..-|++.... .|....++..+..+|...+ .+++|...|++.....|+...|+.-+.... +|
T Consensus 55 isK~eeAL~I--~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~------ka 126 (186)
T PF06552_consen 55 ISKFEEALKI--NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAA------KA 126 (186)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHH------TH
T ss_pred HHHHHHHHhc--CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH------hh
Confidence 3334444443 4545566666666665432 245555555555555677777776665543 34
Q ss_pred HHHHHHHHhCC
Q 012879 296 VENFGRMQKVG 306 (454)
Q Consensus 296 ~~~~~~m~~~~ 306 (454)
-++..++.+++
T Consensus 127 p~lh~e~~~~~ 137 (186)
T PF06552_consen 127 PELHMEIHKQG 137 (186)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHHH
Confidence 55555555543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.44 E-value=6.6 Score=27.47 Aligned_cols=61 Identities=11% Similarity=0.061 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHH
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLL 387 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~ 387 (454)
|.-++.+-++.+... .+.|++.+..+-+++|.+.+++..|.++++.++.+ ..+...|..++
T Consensus 22 D~we~rr~mN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGY-DLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 444555666666554 66777777777777777777777777777766654 22333444444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.12 E-value=0.56 Score=40.96 Aligned_cols=115 Identities=11% Similarity=0.061 Sum_probs=58.4
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-hHHHHHHHHHHcCCChhHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-VVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~ 401 (454)
..|.++.|++.|...++. -++....|..-...+.+.+++..|++-++......||. .-|-.-..+....|++++|..
T Consensus 126 n~G~~~~ai~~~t~ai~l--np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL--NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred cCcchhhhhccccccccc--CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 446666666666666542 12334444444555666666666666666555553332 233333334445566666666
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHH
Q 012879 402 VTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
.++.+.+++.+.. +-..+-...-+.+..++-...+++.
T Consensus 204 dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~~k~er~ 241 (377)
T KOG1308|consen 204 DLALACKLDYDEA-NSATLKEVFPNAGKIEEHRRKYERA 241 (377)
T ss_pred HHHHHHhccccHH-HHHHHHHhccchhhhhhchhHHHHH
Confidence 6666666554321 2223333344444444444444333
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=85.46 E-value=7.4 Score=27.55 Aligned_cols=46 Identities=7% Similarity=0.031 Sum_probs=26.8
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
..+-++.+......| ++.+..+.+.++.+.+++..|.++|+.+...
T Consensus 29 ~rrglN~l~~~DlVP-~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 29 LRRGLNNLFGYDLVP-EPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHTTSSB----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCC-ChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 344445555555455 6777777777777777777777777766654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.44 E-value=0.77 Score=38.09 Aligned_cols=94 Identities=13% Similarity=-0.002 Sum_probs=51.3
Q ss_pred HHHhcCCChHHHHHHHHHHHHh-----cCCCCChh-----------HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHh
Q 012879 319 NACSHGGLVEEGLNFFDKMVEE-----CEVLPDIK-----------HYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVV 381 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~ 381 (454)
+-+.+.|++.+|..-|.++... ..-+|... .+..+..++...|++-++++...++... +.++.
T Consensus 186 N~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvK 265 (329)
T KOG0545|consen 186 NRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK 265 (329)
T ss_pred hhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH
Confidence 4466778888888777776542 01122211 2222334444556666666666555555 33455
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.|-.-..+.+..=+..+|.+-|.++++.+|.
T Consensus 266 A~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 266 AYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 5555555555555666666666666666554
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.22 E-value=1.3 Score=22.75 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=14.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (454)
|..+...+...|+++.|...+++.++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 3444455555555555555555555443
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.58 E-value=2.1 Score=21.51 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=10.1
Q ss_pred HHHHHHHhCCChhHHHHHHh
Q 012879 114 ALVNMYVSLGFLKDSSKLFD 133 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~ 133 (454)
.+...+...|++++|..+++
T Consensus 6 ~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHcCCHHHHHHHHh
Confidence 34445555555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=84.04 E-value=2 Score=26.34 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=26.6
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 384 RTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 384 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
-.+.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 346678899999999999999999999987654
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=83.99 E-value=1.5 Score=25.62 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=17.4
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 419 LMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.++.+|...|+.+.|.++++++...
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHc
Confidence 4667777777777777777776643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.92 E-value=2.5 Score=39.90 Aligned_cols=101 Identities=14% Similarity=-0.003 Sum_probs=70.8
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhH
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPD--IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~ 398 (454)
...|+...|.+.+....-. .|- ......|.....+.|...+|..++.+.... ...+.++..+.+++....++++
T Consensus 618 r~~gn~~~a~~cl~~a~~~---~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNL---APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHhcc---ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 3457888888877776533 332 223345566666777777888777765554 3456677788888888889999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 399 GERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
|++.|+++.+..|.++..-..+...-+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999988888776666554433
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=83.84 E-value=26 Score=30.06 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=16.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
++++|...|++.+|++-|+.-+.
T Consensus 16 i~rl~l~~~~~~~Av~q~~~H~~ 38 (247)
T PF11817_consen 16 ICRLYLWLNQPTEAVRQFRAHID 38 (247)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHH
Confidence 45777888888888877766544
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.35 E-value=2.5 Score=35.14 Aligned_cols=89 Identities=9% Similarity=0.036 Sum_probs=64.8
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChh-HHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH-hHHHHHHHHHHcCCChhH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIK-HYGCLIDMLGRAGRLEQAEKTALGIPSEITDV-VVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~ 398 (454)
|.....++.|+.-|.+.. .+.|+.. -|+.=+.++.+..+++.+.+-..+.++..|+. .....+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 556677888888777766 4567764 44566777888889988888887777775654 344556667778888999
Q ss_pred HHHHHHHHHHhhcC
Q 012879 399 GERVTRKILEMERG 412 (454)
Q Consensus 399 A~~~~~~~~~~~~~ 412 (454)
|+..+.++..+...
T Consensus 97 aI~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 97 AIKVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999998766544
|
|
| >KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.23 E-value=1.1e+02 Score=36.66 Aligned_cols=148 Identities=14% Similarity=0.158 Sum_probs=67.3
Q ss_pred HHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHh----ccCCcchHhHHHHHHHHcCCCCCchhHHH
Q 012879 39 HFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCA----TLSHPNLGTQLHAVISKVGFQSHVYVNTA 114 (454)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 114 (454)
-.|.+.|.+++|..+|++...-...+.. | .+..-|.....-+. ...+++--. +.| -....+..
T Consensus 2490 ~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~--~--~~~~Ey~lWed~WI~Ca~eL~QWdvl~-------e~~--k~~~~~~l 2556 (3550)
T KOG0889|consen 2490 LSYEQLGFWEEAQSLYEKAQVKAREGAI--P--YSESEYKLWEDHWIRCASELQQWDVLT-------EFG--KHEGNYEL 2556 (3550)
T ss_pred HHHHHhhhHHHHhhHHHHHHHHHhcccC--C--CCcHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--hccCCcee
Confidence 3456677777777777766532223332 2 13333444333322 222222111 111 11222334
Q ss_pred HHHHHHhCCChhHHHHHHhhCCC--CC-----chhHHHHHHHHHhcCC-HH-----------HHHHHHhhCCCCCcchHH
Q 012879 115 LVNMYVSLGFLKDSSKLFDEMPE--RN-----LVTWNVMITGLVKWGE-LE-----------FARSLFEEMPCRNVVSWT 175 (454)
Q Consensus 115 l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~ll~~~~~~~~-~~-----------~A~~~~~~~~~~~~~~~~ 175 (454)
++.+..+..++..-...+..... ++ ...|..++..+-...+ .. .++.-+++.++.......
T Consensus 2557 lle~aWrlsdw~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~e~~~l~i~~w~~lP~~v~~~h~ 2636 (3550)
T KOG0889|consen 2557 LLECAWRLSDWNDQKDALEQKAKSLSDVPGFRKELYDAFLALQKKNSNGVGEFERLIGEAIQLAIREWRQLPERVNHGHV 2636 (3550)
T ss_pred eeehhccCCcchhHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhCccccchhhH
Confidence 55555566666665555555442 22 2334444433332222 22 222333333333334445
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVA 199 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~ 199 (454)
.++.++..--...+|..++....+
T Consensus 2637 ~lL~~~QqivEl~Ea~~I~s~l~~ 2660 (3550)
T KOG0889|consen 2637 PLLQAFQQIVELQEAAQIYSDLND 2660 (3550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc
Confidence 566666666666777777666554
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.98 E-value=6.5 Score=32.31 Aligned_cols=58 Identities=9% Similarity=-0.097 Sum_probs=33.8
Q ss_pred HHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 78 SFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 78 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
+.-++.+.+.+...+++...+.-++.. +.|......+++.++-.|++++|..-++-.-
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a 62 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA 62 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh
Confidence 334455555666666666666555544 4455566666666666666666665555443
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.84 E-value=4 Score=23.83 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=12.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 344555555555555555555543
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=82.29 E-value=70 Score=33.66 Aligned_cols=246 Identities=9% Similarity=-0.038 Sum_probs=145.8
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh-hHHHHHHhhCCCCCchhHHHHHHHHH
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL-KDSSKLFDEMPERNLVTWNVMITGLV 151 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~ll~~~~ 151 (454)
|...-...+..+...+..+ +...+..+.+ .++...-...+.++.+.+.. .....+...+..+|..+-...+..+.
T Consensus 634 d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~---D~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~~~d~~VR~~A~~aL~ 709 (897)
T PRK13800 634 DPGVRRTAVAVLTETTPPG-FGPALVAALG---DGAAAVRRAAAEGLRELVEVLPPAPALRDHLGSPDPVVRAAALDVLR 709 (897)
T ss_pred CHHHHHHHHHHHhhhcchh-HHHHHHHHHc---CCCHHHHHHHHHHHHHHHhccCchHHHHHHhcCCCHHHHHHHHHHHH
Confidence 6666667777777777533 4455555543 34555555555555554322 11222223333466666666666665
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH-HHHHH
Q 012879 152 KWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS-CQLIH 230 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 230 (454)
..+.-+ ...+...+..+|...-...+.++...+..+. +..... .++...-.....++...+..+. +...+
T Consensus 710 ~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~----D~~~~VR~~aa~aL~~~~~~~~~~~~~L 780 (897)
T PRK13800 710 ALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT----DENREVRIAVAKGLATLGAGGAPAGDAV 780 (897)
T ss_pred hhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc----CCCHHHHHHHHHHHHHhccccchhHHHH
Confidence 543211 2345556667777777777777777665432 222322 4666777777777777766543 33444
Q ss_pred HhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 231 GYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
..+.+. + ++.+-...+.++.+.|....+...+..+... ++..+-...+.++...+. +++...+..+.+ .|+
T Consensus 781 ~~ll~D---~-d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d-~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~---D~~ 851 (897)
T PRK13800 781 RALTGD---P-DPLVRAAALAALAELGCPPDDVAAATAALRA-SAWQVRQGAARALAGAAA-DVAVPALVEALT---DPH 851 (897)
T ss_pred HHHhcC---C-CHHHHHHHHHHHHhcCCcchhHHHHHHHhcC-CChHHHHHHHHHHHhccc-cchHHHHHHHhc---CCC
Confidence 455443 3 7788888889999888876554444444432 666666667777777765 456666666665 356
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
...-...+.++.+.+....+...+..+.+.
T Consensus 852 ~~VR~~A~~aL~~~~~~~~a~~~L~~al~D 881 (897)
T PRK13800 852 LDVRKAAVLALTRWPGDPAARDALTTALTD 881 (897)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHhC
Confidence 777777777887764445677777766653
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.68 E-value=56 Score=32.08 Aligned_cols=272 Identities=12% Similarity=0.009 Sum_probs=153.0
Q ss_pred HHHHHHHHhhCCC-CCcchHHHHHHH-----HHhcCChHHHHHHHHHHHH-------ccCCCCChhhHHhHHHHHHccC-
Q 012879 156 LEFARSLFEEMPC-RNVVSWTGIIDG-----YTRMNRSNEALALFRKMVA-------CEYTEPSEITILAVLPAIWQNG- 221 (454)
Q Consensus 156 ~~~A~~~~~~~~~-~~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~- 221 (454)
...|.+.++.... .+...-..+..+ +....+.+.|+.+|+.+.. . + .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-G---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-c---CCccccHHHHHHhcCCC
Confidence 4677777777664 233333323222 3456789999999998866 3 3 3345666677776643
Q ss_pred ----chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh---cCChhHHHHHHHHhhhcCCChhhHHHHHHHHH----hcC
Q 012879 222 ----DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK---CGCIFSASKLFEDISVERKNLVSWTSIISGFA----MHG 290 (454)
Q Consensus 222 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~----~~g 290 (454)
+.+.|..++....+.|. | +.... +..+|.. ..+...|.++|.......-....|.. ..+|. -..
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~l-a~~y~~G~gv~r 378 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-P-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRL-ALCYELGLGVER 378 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-c-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHH-HHHHHhCCCcCC
Confidence 66779999999998863 2 33333 3333333 24678999999998876433333332 22222 233
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH---Hh----cCCh
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML---GR----AGRL 363 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~ 363 (454)
+...|..++.+.-+.| .|....-...+..+.. ++++.+.-.+..+... +.+.....-..++... .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccch
Confidence 7789999999998887 3332222233334444 7777777666666654 4432211111111111 01 1244
Q ss_pred HHHHHHHhcCCCCCCcHhHHHHHHHHHHcC----CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc-CC--cCcHHHH
Q 012879 364 EQAEKTALGIPSEITDVVVWRTLLGACSFH----GNVEMGERVTRKILEMERGYGGDYVLMYNILAGV-GR--FGDAERL 436 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~--~~~a~~~ 436 (454)
+.+...+.+.... -+......+.+.|..- .+++.|...+..+.+.+ ......++..+.+- |- +..|.++
T Consensus 456 ~~~~~~~~~a~~~-g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQ-GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred hHHHHHHHHHHhc-cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 4555555554443 3444445555554432 35788888888887766 44444555555332 11 4566666
Q ss_pred HHHHhhc
Q 012879 437 RRVMDER 443 (454)
Q Consensus 437 ~~~~~~~ 443 (454)
+++....
T Consensus 532 ~~~~~~~ 538 (552)
T KOG1550|consen 532 YDQASEE 538 (552)
T ss_pred HHHHHhc
Confidence 6665553
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.32 E-value=46 Score=30.87 Aligned_cols=96 Identities=8% Similarity=-0.017 Sum_probs=52.8
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHG 394 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g 394 (454)
..|+.-|...|+..+|.+.++++-- .+-....++.+++.+..+.|+-...+.++++.-.. ...|-+.+-++|-+..
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgm--PfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~s--glIT~nQMtkGf~RV~ 588 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGM--PFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKS--GLITTNQMTKGFERVY 588 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCC--CcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc--CceeHHHhhhhhhhhh
Confidence 3456666666777777666666521 22233556666777777777666555555554443 4445555555554432
Q ss_pred --------ChhHHHHHHHHHHHhhcCCC
Q 012879 395 --------NVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 395 --------~~~~A~~~~~~~~~~~~~~~ 414 (454)
++..|.+.|+..++....+.
T Consensus 589 dsl~DlsLDvPna~ekf~~~Ve~~~~~G 616 (645)
T KOG0403|consen 589 DSLPDLSLDVPNAYEKFERYVEECFQNG 616 (645)
T ss_pred ccCcccccCCCcHHHHHHHHHHHHHHcC
Confidence 23445555555555544443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.93 E-value=23 Score=30.56 Aligned_cols=86 Identities=8% Similarity=-0.125 Sum_probs=39.6
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHh----
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACS---- 322 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---- 322 (454)
-|.+++..+++.+++...-+--+. +-.......-|-.|.+.+++..+.++-..-.+..-.-+...|..++..|.
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 355556666666655544333322 11223333444455566666655555555444211112223444444332
Q ss_pred -cCCChHHHHHHH
Q 012879 323 -HGGLVEEGLNFF 334 (454)
Q Consensus 323 -~~~~~~~a~~~~ 334 (454)
=.|.+++|+++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 345666665554
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=80.03 E-value=74 Score=32.45 Aligned_cols=217 Identities=12% Similarity=0.065 Sum_probs=116.9
Q ss_pred HHhCCChhHHHHHHhhCCC----CCch-------hHHHHHH-HHHhcCCHHHHHHHHhhCCC--------CCcchHHHHH
Q 012879 119 YVSLGFLKDSSKLFDEMPE----RNLV-------TWNVMIT-GLVKWGELEFARSLFEEMPC--------RNVVSWTGII 178 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~~----~~~~-------~~~~ll~-~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~ 178 (454)
.....++++|..++.+... |+.. .|+.+-. .....|++++|.++-+.... .....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 4456788888888877642 3222 3444332 23467888888888765442 3456677778
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHH-----HHHHccCchhHH--HHHHHhhhhcCC--CC---chHHHH
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVL-----PAIWQNGDVKSC--QLIHGYGEKRGF--TA---FDIRVL 246 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~~~~~~a--~~~~~~~~~~~~--~~---~~~~~~ 246 (454)
.+..-.|++++|..+..+..+. .-.-+...+.... ..+...|+...+ ...+........ .| +-..++
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 8888899999999888877664 2233443333222 234566633322 222333222210 11 122344
Q ss_pred HHHHHHHHhc-CChhHHHHHHHHhhhcCCChh----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----cHHHHHHH
Q 012879 247 NCLIDTYAKC-GCIFSASKLFEDISVERKNLV----SWTSIISGFAMHGMGKEAVENFGRMQKVGLKP----NRVTFLSV 317 (454)
Q Consensus 247 ~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~l 317 (454)
..++.++.+. +...++..-+.-.....|... .+..|+......|+.++|...++++......+ +..+-...
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 4555555541 122222222222222223221 22356777888999999999998887632222 22222222
Q ss_pred H--HHHhcCCChHHHHHHHHH
Q 012879 318 L--NACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 318 ~--~~~~~~~~~~~a~~~~~~ 336 (454)
+ ......|+.+.+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 2 223456787777766655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 56.0 bits (133), Expect = 2e-08
Identities = 26/169 (15%), Positives = 53/169 (31%), Gaps = 6/169 (3%)
Query: 205 PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASK 264
P E + +L + Q G + + R L + A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQR-LLAFFKCCLLTDQLPLAHH 148
Query: 265 LFEDISVERK-----NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319
L +R+ L + +++ G+A G KE V ++ GL P+ +++ + L
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368
+ + + + + L+ RA L+ K
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHK 257
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 3e-07
Identities = 24/217 (11%), Positives = 57/217 (26%), Gaps = 13/217 (5%)
Query: 52 LLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYV 111
LL KQ+ P + L++ ++ S+
Sbjct: 70 LLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQR 129
Query: 112 NTALVNMYVSLGFLKDSSKLFDEMPER-------NLVTWNVMITGLVKWGELEFARSLFE 164
A + L + L + L +N ++ G + G + +
Sbjct: 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189
Query: 165 EMPCR----NVVSWTGIIDGYTRMNRSNEALA-LFRKMVACEYTEPSEITILAVLPAIWQ 219
+ +++S+ + R ++ + +M + +L +
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ-ALFTAVLLSEEDR 248
Query: 220 NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256
+K+ + + L D YAK
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 48.3 bits (113), Expect = 5e-06
Identities = 10/100 (10%), Positives = 29/100 (29%), Gaps = 4/100 (4%)
Query: 275 NLVSWTSIISGFAMHGMGKEA---VENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGL 331
+ + A + ++ + +V+ + G +E +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 332 NFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTAL 371
+ + + PD+ Y + +GR + + L
Sbjct: 186 YVLFMVKDA-GLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 1e-07
Identities = 68/450 (15%), Positives = 128/450 (28%), Gaps = 142/450 (31%)
Query: 4 LQNSQTPNNITTQIHS--HLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIY 61
L+N +P + + + + N N L +S+ +A L + Y
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPY 243
Query: 62 THSHSPL--------PPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNT 113
+ L +++F S C L L T+ V + + ++
Sbjct: 244 ENC---LLVLLNVQNAKAWNAFNLS-----CKIL----LTTRFKQVTDFLSAATTTHI-- 289
Query: 114 ALVNMYVSLGFLKDSSK-LF--------DEMPERNLVTWNVMITGLVKWGELEFARSLFE 164
+L + S+ D K L ++P ++T N ++ E
Sbjct: 290 SLDHH--SMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRRLSII--AES------IR 338
Query: 165 EMPCRNVVSWTGIIDGYTRMN---------RSNEAL--ALFRKMVACEYTE----PSEIT 209
+ W D + +N S L A +RKM + P
Sbjct: 339 DGLAT----W----DNWKHVNCDKLTTIIESSLNVLEPAEYRKM----FDRLSVFPPSAH 386
Query: 210 I-LAVLPAIWQNGDVKSCQLI----HGYG--EKRGFT--------AFDIRVL-------- 246
I +L IW + ++ H Y EK+ +++V
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 247 NCLIDTY--AKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304
++D Y K + D S H E E +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLD-----------QYFYSHIGHHLKNIEHPERMTLFRM 495
Query: 305 VGLKPNRVTFL------SVLNACSHGGLVE--EGLNFFDK-MVEEC----EVLPDIKHYG 351
V L FL + G ++ + L F+ + + ++ I +
Sbjct: 496 VFLDFR---FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF- 551
Query: 352 CLIDMLGRAGRLEQAEKTALGIPSEITDVV 381
L + E+ I S+ TD++
Sbjct: 552 -----------LPKIEENL--ICSKYTDLL 568
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 7e-05
Identities = 27/223 (12%), Positives = 65/223 (29%), Gaps = 44/223 (19%)
Query: 259 IFSASKLFEDISVERKNLVSWTSIIS---------GFAMHGM---GK-----EAVENFGR 301
+++ +++F +V R + + G+ GK + ++
Sbjct: 119 LYNDNQVFAKYNVSRLQPY--LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 302 MQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDML 357
K ++ +L++ N S ++E ++ D IK + +
Sbjct: 177 QCK---MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQ 231
Query: 358 GRAGRL--EQAEKTALGIPSEITDVVVWRTLLGAC--------SFHGNVEMGERVTRKIL 407
RL + + L + + + W +C + T L
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 408 E-MERGYGGDYVLMYNILAGVGRFG-DAERLRRVMDERNAFKV 448
+ D V ++L + L R + N ++
Sbjct: 292 DHHSMTLTPDEVK--SLLLKY--LDCRPQDLPREVLTTNPRRL 330
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.87 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.84 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.84 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.8 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.79 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.76 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.74 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.7 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.69 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.68 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.68 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.67 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.67 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.64 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.61 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.6 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.59 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.58 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.58 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.56 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.56 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.54 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.54 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.52 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.49 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.46 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.45 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.45 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.41 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.34 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.3 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.3 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.29 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.2 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.19 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.18 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.17 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.14 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.14 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.12 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.11 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.1 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.1 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.09 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.07 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.07 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.07 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.07 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.06 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.03 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.03 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.03 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.02 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.94 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.93 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.92 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.92 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.91 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.9 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.89 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.89 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.87 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.87 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.86 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.85 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.85 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.82 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.8 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.8 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.78 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.77 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.76 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.74 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.73 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.72 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.71 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.7 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.69 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.69 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.68 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.66 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.65 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.63 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.63 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.63 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.62 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.62 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.56 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.55 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.55 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.54 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.52 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.51 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.5 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.49 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.45 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.45 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.45 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.43 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.41 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.4 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.37 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.36 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.34 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.33 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.32 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.23 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.23 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.21 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.21 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.11 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.08 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.07 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.07 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.03 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.02 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.92 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.8 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.79 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.76 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.74 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.74 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.58 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.51 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.44 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.42 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.37 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 97.32 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.21 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.19 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.18 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.12 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.08 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.04 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.96 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.9 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.77 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.73 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.72 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.57 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.45 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.29 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.28 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.21 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.13 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.07 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.02 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.99 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.47 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.47 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.38 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.35 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.32 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.28 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 95.14 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.02 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 94.01 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 94.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.0 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.93 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.76 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.65 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.02 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 93.02 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.63 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.6 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.03 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.91 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.78 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.97 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 90.13 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.61 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.51 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 89.5 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 89.01 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.93 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.44 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.16 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 86.79 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.34 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 85.98 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 85.85 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 81.98 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 80.8 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-39 Score=316.96 Aligned_cols=290 Identities=12% Similarity=-0.014 Sum_probs=254.7
Q ss_pred HHhcCCHHHHHHHHhhCCC--CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHH
Q 012879 150 LVKWGELEFARSLFEEMPC--RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQ 227 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 227 (454)
|.+.|++++|.++|+++.+ ++..+++.++..|.+.|++++|..+|+++.+. .+.+..++..++.++.+.|++++|.
T Consensus 282 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 359 (597)
T 2xpi_A 282 TSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLY 359 (597)
T ss_dssp TTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHH
T ss_pred HcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHH
Confidence 3345555556666666555 56778888999999999999999999999874 3557788999999999999999999
Q ss_pred HHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012879 228 LIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 306 (454)
.+++.+.+. .|.+..+++.++.+|.+.|++++|.++|+++.+..| +..+|+.++.+|.+.|++++|+++|+++.+.+
T Consensus 360 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 437 (597)
T 2xpi_A 360 LISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF 437 (597)
T ss_dssp HHHHHHHHH--CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhh--CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999876 466889999999999999999999999999988766 67899999999999999999999999999874
Q ss_pred CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC------CCc-
Q 012879 307 LKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE------ITD- 379 (454)
Q Consensus 307 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p~- 379 (454)
+.+..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|..++.+|.+.|++++|.++|+++... .|+
T Consensus 438 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 438 -QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 347789999999999999999999999999875 3447889999999999999999999999988654 466
Q ss_pred -HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 380 -VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 380 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
..+|..++.+|.+.|++++|++.++++++.+|.++.+|..++.+|.+.|++++|.+.++++.+.+..
T Consensus 515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 7899999999999999999999999999999999999999999999999999999999999886543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=303.83 Aligned_cols=398 Identities=8% Similarity=0.004 Sum_probs=350.0
Q ss_pred hhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCC
Q 012879 28 LHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQS 107 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 107 (454)
.+++..|+.++..|.+.|++++|+.+|+++. .. . | +..++..++.+|...|++++|..+++.+.. .++
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~---~~--~--p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~ 148 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVL---DI--T--G---NPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNR 148 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HH--H--C---CHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGT
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHH---hh--C--C---CchHHHHHHHHHHHcCcHHHHHHHHHHHhc--ccc
Confidence 3788999999999999999999999999997 32 3 6 778899999999999999999999998865 368
Q ss_pred CchhHHHHHHHHHhCCChhHHHHHHhhCCCC-------------------CchhHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 012879 108 HVYVNTALVNMYVSLGFLKDSSKLFDEMPER-------------------NLVTWNVMITGLVKWGELEFARSLFEEMPC 168 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~ 168 (454)
++.+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 149 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 228 (597)
T 2xpi_A 149 SSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM 228 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8999999999999999999999999965543 367999999999999999999999999874
Q ss_pred --CC-cchHHH--------------------------------------HHHHHHhcCChHHHHHHHHHHHHccCCCCCh
Q 012879 169 --RN-VVSWTG--------------------------------------IIDGYTRMNRSNEALALFRKMVACEYTEPSE 207 (454)
Q Consensus 169 --~~-~~~~~~--------------------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 207 (454)
|+ ...+.. ++..|.+.|++++|.++|+++.+. +++.
T Consensus 229 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~ 305 (597)
T 2xpi_A 229 VDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL---EKSS 305 (597)
T ss_dssp HCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG---GGCH
T ss_pred hCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC---CchH
Confidence 32 222222 244566789999999999999874 5889
Q ss_pred hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHH
Q 012879 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGF 286 (454)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~ 286 (454)
.++..++..+.+.|++++|..+|+++.+.+ |.+..++..++.++.+.|++++|.++|+++....| +..+++.++..|
T Consensus 306 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 306 DLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 999999999999999999999999999874 55788899999999999999999999999987765 688999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.+.|++++|.++|+++.+.. +.+..+|+.++.++.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998853 336789999999999999999999999999874 345788999999999999999999
Q ss_pred HHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC---C----CCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 367 EKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG---Y----GGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 367 ~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~----~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
.++|+++... +.+..+|..++..|.+.|++++|+++|+++.+..|. + ..+|..++.+|.+.|++++|.+.++
T Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 461 NEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999998776 446889999999999999999999999999998532 2 4578899999999999999999999
Q ss_pred HHhhccc
Q 012879 439 VMDERNA 445 (454)
Q Consensus 439 ~~~~~~~ 445 (454)
++.+.+.
T Consensus 541 ~~~~~~p 547 (597)
T 2xpi_A 541 QGLLLST 547 (597)
T ss_dssp HHHHHSS
T ss_pred HHHHhCC
Confidence 9988763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-32 Score=247.66 Aligned_cols=376 Identities=12% Similarity=0.067 Sum_probs=334.0
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHH
Q 012879 37 LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALV 116 (454)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 116 (454)
+...+.+.|++++|++.++.+. ...+. +...+..+...+...|++++|...++...+.. +.+..+|..+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~---~~~p~------~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg 74 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLW---RQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHH
Confidence 3556788999999999999998 65555 67788888889999999999999999998865 66788999999
Q ss_pred HHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-cchHHHHHHHHHhcCChHHH
Q 012879 117 NMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNEA 190 (454)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a 190 (454)
.++.+.|++++|...|+++.+ |+ ..+|..+..++.+.|++++|.+.|+++.+ |+ ...+..+...+...|++++|
T Consensus 75 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999999874 54 45799999999999999999999998764 44 45677888899999999999
Q ss_pred HHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 191 LALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
...|+++.+. .+.+..++..+...+...|+++.|...++++.+. .|.+...+..+...+...|++++|...|++..
T Consensus 155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 230 (388)
T 1w3b_A 155 KACYLKAIET--QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999884 3556788999999999999999999999999997 46688899999999999999999999999998
Q ss_pred hcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 271 VERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 271 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
...| +..++..+...+...|++++|.+.|+++.+.. +.+..++..+..++.+.|++++|...|+.+.+. .+.+..+
T Consensus 231 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~ 307 (388)
T 1w3b_A 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADS 307 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred hhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHH
Confidence 8877 57889999999999999999999999999864 235678899999999999999999999999985 3567889
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+..+...+.+.|++++|.+.++++....| +..++..+..++.+.|++++|++.++++++..|.+...|..++.++...|
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999999988844 57889999999999999999999999999999999999999999888776
Q ss_pred C
Q 012879 429 R 429 (454)
Q Consensus 429 ~ 429 (454)
+
T Consensus 388 ~ 388 (388)
T 1w3b_A 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-29 Score=229.87 Aligned_cols=370 Identities=11% Similarity=0.016 Sum_probs=324.0
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+...++.+.+..| .++..+..+...+.+.|++++|...++... ...+. +..+|..+..++..
T Consensus 11 ~~g~~~~A~~~~~~~~~~~p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~---~~~p~------~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAI---KQNPL------LAEAYSNLGNVYKE 79 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC------chHHHHHHHHHHHH
Confidence 35778889999999988876 777888888999999999999999999998 55544 88899999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHHH
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
.|++++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|.+.|
T Consensus 80 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 999999999999999865 44566899999999999999999999999874 54 456778888899999999999999
Q ss_pred hhCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 164 EEMPC--R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 164 ~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
+++.+ | +..+|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...+++..+. .|
T Consensus 159 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p 234 (388)
T 1w3b_A 159 LKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SP 234 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CT
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cc
Confidence 98864 3 4578999999999999999999999999984 3556788999999999999999999999999987 56
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
.+..++..+..+|.+.|++++|.+.|+++....| +..+|..+...+.+.|++++|...|+++.+.. +.+..++..+..
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 6889999999999999999999999999998866 57789999999999999999999999998863 557889999999
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
.+...|++++|...++++.+. .+.+..++..+..+|.+.|++++|.+.|+++....| +...|..+...+...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999999863 344578899999999999999999999999888745 56778888777766553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=235.53 Aligned_cols=186 Identities=10% Similarity=0.017 Sum_probs=168.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc---------hhHHHHHHHhhhhcCCCCch
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD---------VKSCQLIHGYGEKRGFTAFD 242 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 242 (454)
..++.+|.+|++.|++++|+++|++|.+. |+.||..||+.++.+|++.+. ++.|.++|++|.+.|+.| |
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P-d 104 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP-N 104 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC-C
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC-C
Confidence 35788899999999999999999999988 899999999999999987654 678999999999998777 9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
..+|++++.+|++.|++++|.++|++|.+. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+
T Consensus 105 ~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 105 EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 999999999999999999999999999877 589999999999999999999999999999999999999999999999
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA 360 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (454)
|++.|+.++|.+++++|.+. +..|+..||+.++..|...
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHSH
T ss_pred HhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999988 9999999999999888753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=230.80 Aligned_cols=202 Identities=15% Similarity=0.131 Sum_probs=175.6
Q ss_pred HHHHHHHHHHHccCCCCCh-hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC---------
Q 012879 189 EALALFRKMVACEYTEPSE-ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC--------- 258 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------- 258 (454)
.+..+.+++.+. +..+.+ ..++.++.+|++.|++++|.++|++|.+.|+.| |..+|+.|+.+|++.+.
T Consensus 8 ~~e~L~~~~~~k-~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 8 PSENLSRKAKKK-AIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred hHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcch
Confidence 345555666665 554443 468889999999999999999999999999877 99999999999987765
Q ss_pred hhHHHHHHHHhhhc--CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 259 IFSASKLFEDISVE--RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 259 ~~~a~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
++.|.++|++|... .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence 68899999999887 5899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--CCcHhHHHHHHHHHHcC
Q 012879 337 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--ITDVVVWRTLLGACSFH 393 (454)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~ 393 (454)
|.+. |+.||..+|++|+.+|++.|++++|.+++++|.+. .|+..||+.++..|...
T Consensus 166 M~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 166 MVES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9998 99999999999999999999999999999999876 89999999999988753
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-26 Score=212.14 Aligned_cols=385 Identities=7% Similarity=-0.038 Sum_probs=273.1
Q ss_pred CCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCC
Q 012879 10 PNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSH 89 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~ 89 (454)
+...+...+..+....+ .++..|..+...+.+.|++++|+.+|+.+. ...+. +..++..+..++...|+
T Consensus 7 ~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~l~~~~~~~g~ 75 (450)
T 2y4t_A 7 HSSGVDLGTENLYFQSM--ADVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPD------NYIAYYRRATVFLAMGK 75 (450)
T ss_dssp ----------------C--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTC
T ss_pred ccccccccccccccccH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCc------cHHHHHHHHHHHHHCCC
Confidence 33444455555556665 888999999999999999999999999998 55544 78899999999999999
Q ss_pred cchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-c---hhHHHHHHHHHhcCCHHHHHHHH
Q 012879 90 PNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-L---VTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 90 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
+++|...++.+.+.+ +.+..++..+..+|.+.|++++|...|+++.+ |+ . .++..+...+...+
T Consensus 76 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 145 (450)
T 2y4t_A 76 SKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR--------- 145 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH---------
Confidence 999999999999876 55678889999999999999999999998875 32 2 45555544432221
Q ss_pred hhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH
Q 012879 164 EEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI 243 (454)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (454)
+..+...+...|++++|+..|+++.+ ..+.+..++..+..++...|++++|...++.+.+. .|.+.
T Consensus 146 ----------~~~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~ 211 (450)
T 2y4t_A 146 ----------LRSQALNAFGSGDYTAAIAFLDKILE--VCVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNT 211 (450)
T ss_dssp ----------HHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCH
T ss_pred ----------HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 22344456667788888888887776 33456677777777888888888888888877775 34467
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSI------------ISGFAMHGMGKEAVENFGRMQKVGLKPN 310 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 310 (454)
.++..++.+|...|++++|...|+++....|+ ...+..+ ...+...|++++|...|+++.+.. |+
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~ 289 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PS 289 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc
Confidence 77888888888888888888888887776553 3344433 677788888888888888887742 33
Q ss_pred -----HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHH
Q 012879 311 -----RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWR 384 (454)
Q Consensus 311 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 384 (454)
...+..+..++.+.|++++|...++.+.+. .+.+...+..+..+|...|++++|.+.++++....|+ ...+.
T Consensus 290 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 290 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367 (450)
T ss_dssp SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHH
Confidence 346777778888888888888888888764 2335778888888888888888888888887776443 45555
Q ss_pred HHHH------------HHHcCC-----ChhHHHHHHHH-HHHhhcCCCC----------cHHHHHHHHHhcCCcCcH
Q 012879 385 TLLG------------ACSFHG-----NVEMGERVTRK-ILEMERGYGG----------DYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 385 ~l~~------------~~~~~g-----~~~~A~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a 433 (454)
.+.. .|...| +.+++.+.+++ +++..|+... .+..+..+|...|+.+..
T Consensus 368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 5542 233344 66778888887 6777776322 344566666666666544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.8e-27 Score=223.06 Aligned_cols=400 Identities=8% Similarity=-0.062 Sum_probs=319.6
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.....|......+.+.|++++|+..|+++. ... | +..+|..+..++...|++++|...++.+.+.+ +.+
T Consensus 4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~----p---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 72 (514)
T 2gw1_A 4 KYALALKDKGNQFFRNKKYDDAIKYYNWAL---ELK----E---DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDY 72 (514)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHH---HHC----C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCC
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHH---hcC----c---cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHH
Confidence 345677888889999999999999999998 433 5 88899999999999999999999999999876 556
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHH----------------------
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLF---------------------- 163 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~---------------------- 163 (454)
..++..+..++.+.|++++|...|+++.+ ++......++..+.+......+.+.+
T Consensus 73 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (514)
T 2gw1_A 73 SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK 152 (514)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH
Confidence 77899999999999999999999998764 23333334444333322222222211
Q ss_pred ----------------hhCCC---------C-CcchHHHHHHHHHh---cCChHHHHHHHHHHHH-----ccCC------
Q 012879 164 ----------------EEMPC---------R-NVVSWTGIIDGYTR---MNRSNEALALFRKMVA-----CEYT------ 203 (454)
Q Consensus 164 ----------------~~~~~---------~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~------ 203 (454)
..... | +...+......+.. .|++++|+..|+++.+ ....
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 232 (514)
T 2gw1_A 153 DKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL 232 (514)
T ss_dssp ----CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH
T ss_pred hhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc
Confidence 11110 1 13344444444554 8999999999999987 2111
Q ss_pred -CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHH
Q 012879 204 -EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTS 281 (454)
Q Consensus 204 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~ 281 (454)
+.+..++..+...+...|+++.|...++.+.+.. |. ...+..+..++...|++++|...|+++....| +...+..
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 309 (514)
T 2gw1_A 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYH 309 (514)
T ss_dssp HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHH
T ss_pred ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHH
Confidence 2335678888889999999999999999999873 53 88889999999999999999999999988765 6778889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC
Q 012879 282 IISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG 361 (454)
Q Consensus 282 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 361 (454)
+...+...|++++|...++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...|.+.|
T Consensus 310 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 386 (514)
T 2gw1_A 310 RGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKN 386 (514)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCC
Confidence 99999999999999999999988643 35668888889999999999999999999875 2345678888999999999
Q ss_pred ChHHHHHHHhcCCCCCCc-------HhHHHHHHHHHHc---CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 362 RLEQAEKTALGIPSEITD-------VVVWRTLLGACSF---HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 362 ~~~~A~~~~~~~~~~~p~-------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
++++|.+.++++....|+ ..++..+...+.. .|++++|.+.++++++..|.+...+..++.++.+.|+++
T Consensus 387 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~ 466 (514)
T 2gw1_A 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDID 466 (514)
T ss_dssp CHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHH
Confidence 999999999987665222 3388899999999 999999999999999999998889999999999999999
Q ss_pred cHHHHHHHHhhccc
Q 012879 432 DAERLRRVMDERNA 445 (454)
Q Consensus 432 ~a~~~~~~~~~~~~ 445 (454)
+|.+.+++..+.+.
T Consensus 467 ~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 467 EAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999887654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-26 Score=218.59 Aligned_cols=398 Identities=10% Similarity=0.002 Sum_probs=292.6
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.....|..+...+.+.|++++|+..|+++. ...+. +..+|..+..++...|++++|.+.++.+.+.+ +.+
T Consensus 23 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~ 92 (537)
T 3fp2_A 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAI---ELDPN------EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDH 92 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCCC-CHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHH---hhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-Cch
Confidence 456788999999999999999999999998 66655 88899999999999999999999999999876 557
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC-------------------- 168 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-------------------- 168 (454)
..++..+..++...|++++|...|+.+. .++......+..+...+....|...++.+..
T Consensus 93 ~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 93 SKALLRRASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 7889999999999999999999997443 2222222223333344444455555544432
Q ss_pred -----------------CCcc---hHHHHHHHHHh--------cCChHHHHHHHHHHHHccCCCCCh-------hhHHhH
Q 012879 169 -----------------RNVV---SWTGIIDGYTR--------MNRSNEALALFRKMVACEYTEPSE-------ITILAV 213 (454)
Q Consensus 169 -----------------~~~~---~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l 213 (454)
.+.. ....+...+.. .|++++|..+|+++.+. .+.+. .++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHH
Confidence 1111 22222222221 24788888888888764 22222 246666
Q ss_pred HHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCCh
Q 012879 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMG 292 (454)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 292 (454)
...+...|+++.|...++.+.+. .| +...+..+..++...|++++|...|+++....| +..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINL--HP-TPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CC-CHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CC-CchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCH
Confidence 77778888889999998888886 34 477788888888888999999999988887755 567888888888888999
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhc
Q 012879 293 KEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALG 372 (454)
Q Consensus 293 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (454)
++|...++++.+... .+...+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++
T Consensus 327 ~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp HHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 999999988887532 24567777888888889999999999888875 234466778888888889999999888888
Q ss_pred CCCCCC-------cHhHHHHHHHHHHcC----------CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHH
Q 012879 373 IPSEIT-------DVVVWRTLLGACSFH----------GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAER 435 (454)
Q Consensus 373 ~~~~~p-------~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (454)
+....| ....+..+...+... |++++|+..++++++..|.+...+..++.++.+.|++++|.+
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 765411 112244455666666 888999999999988888888888888999999999999998
Q ss_pred HHHHHhhccc
Q 012879 436 LRRVMDERNA 445 (454)
Q Consensus 436 ~~~~~~~~~~ 445 (454)
.+++..+...
T Consensus 484 ~~~~al~~~~ 493 (537)
T 3fp2_A 484 LFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHhCC
Confidence 8888877543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-25 Score=213.64 Aligned_cols=395 Identities=9% Similarity=-0.062 Sum_probs=318.3
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+...++...+.. |++.+|..+..++.+.|++++|+..|+.+. ...+. +..+|..+..++..
T Consensus 18 ~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 18 RNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKAL---ELKPD------YSKVLLRRASANEG 85 (514)
T ss_dssp HTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCSC------CHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHh---ccChH------HHHHHHHHHHHHHH
Confidence 4567888999999998877 688999999999999999999999999998 66655 78899999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHH----------------------------------
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLF---------------------------------- 132 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~---------------------------------- 132 (454)
.|++++|...|+.+.+.+ +++......++..+........+.+.+
T Consensus 86 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999876 445444444544444332222222211
Q ss_pred ----hhCCC---------C-CchhHHHHHHHHHh---cCCHHHHHHHHhhCCC----------------C-CcchHHHHH
Q 012879 133 ----DEMPE---------R-NLVTWNVMITGLVK---WGELEFARSLFEEMPC----------------R-NVVSWTGII 178 (454)
Q Consensus 133 ----~~~~~---------~-~~~~~~~ll~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~~l~ 178 (454)
..... | +...+......+.. .|++++|..+|+++.+ | +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 11110 1 12333344444443 8999999999987654 1 245778889
Q ss_pred HHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 179 DGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
..+...|++++|...|+++.+. . |+...+..+...+...|+++.|...++.+.+. .|.+..++..+..++...|+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999885 2 33888999999999999999999999999886 45578899999999999999
Q ss_pred hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 259 IFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
+++|...|+++....| +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+
T Consensus 320 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999988766 67788999999999999999999999998753 335678888899999999999999999999
Q ss_pred HHhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 338 VEECEVLPD----IKHYGCLIDMLGR---AGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 338 ~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.+...-.++ ...+..+..++.. .|++++|.+.++++.... .+..++..+...+...|++++|.+.++++++.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 875222222 3488899999999 999999999999887663 35778899999999999999999999999999
Q ss_pred hcCCCCcHHHH
Q 012879 410 ERGYGGDYVLM 420 (454)
Q Consensus 410 ~~~~~~~~~~l 420 (454)
.|.++..+..+
T Consensus 479 ~~~~~~~~~~~ 489 (514)
T 2gw1_A 479 ARTMEEKLQAI 489 (514)
T ss_dssp CSSHHHHHHHH
T ss_pred ccccHHHHHHH
Confidence 99876665544
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=208.41 Aligned_cols=326 Identities=10% Similarity=0.049 Sum_probs=261.3
Q ss_pred CCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHH
Q 012879 106 QSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIID 179 (454)
Q Consensus 106 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~ 179 (454)
+.+...+..+...+.+.|++++|..+|+++.+ .+..+|..+..++...|++++|...|+++.+ .+..++..+..
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 44566777777777778888888888777653 3456777777778888888888888877653 34567888888
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCCCh---hhHHhH------------HHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 180 GYTRMNRSNEALALFRKMVACEYTEPSE---ITILAV------------LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
+|...|++++|...|+++.+. .+.+. ..+..+ ...+...|+++.|...++.+.+. .|.+..
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 178 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV--CVWDAE 178 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH
Confidence 888888888888888888763 22333 444444 44588999999999999999987 466889
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH------
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV------ 317 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------ 317 (454)
++..++.+|.+.|++++|.+.|+++....| +..++..+...|...|++++|...|+++.+... .+...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 999999999999999999999999988755 788999999999999999999999999987532 233444444
Q ss_pred ------HHHHhcCCChHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHH
Q 012879 318 ------LNACSHGGLVEEGLNFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRT 385 (454)
Q Consensus 318 ------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 385 (454)
...+...|++++|...|+.+.+. .|+ ...+..+..++.+.|++++|.+.++++....| +..+|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence 78889999999999999999875 343 44788899999999999999999999876534 6889999
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH------------HHhcC-----CcCcHHHHHHH
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI------------LAGVG-----RFGDAERLRRV 439 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~ 439 (454)
+..+|...|++++|...++++++..|.++..+..+..+ |...| +.+++.+.+++
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999999999999999999988888888744 44445 44556666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5.3e-23 Score=197.67 Aligned_cols=388 Identities=8% Similarity=-0.043 Sum_probs=302.5
Q ss_pred CCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 7 SQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++.+.+...++...+..| .++.+|..+...|.+.|++++|++.|+++. ...+. +..++..+..++..
T Consensus 37 ~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~------~~~~~~~la~~~~~ 105 (537)
T 3fp2_A 37 TAKNFNEAIKYYQYAIELDP--NEPVFYSNISACYISTGDLEKVIEFTTKAL---EIKPD------HSKALLRRASANES 105 (537)
T ss_dssp HTTCCC-CHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHhhCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCc------hHHHHHHHHHHHHH
Confidence 46788899999999999887 889999999999999999999999999998 66655 78899999999999
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC-----------------------------
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE----------------------------- 137 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----------------------------- 137 (454)
.|++++|...++ ..... |+.. ...+..+...+....|...++.+..
T Consensus 106 ~g~~~~A~~~~~-~~~~~--~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (537)
T 3fp2_A 106 LGNFTDAMFDLS-VLSLN--GDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEV 180 (537)
T ss_dssp HTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHH
T ss_pred cCCHHHHHHHHH-HHhcC--CCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHH
Confidence 999999999996 33322 2211 1122233334444555555555532
Q ss_pred --------CCch---hHHHHHHHHH--------hcCCHHHHHHHHhhCCC--CC--------cchHHHHHHHHHhcCChH
Q 012879 138 --------RNLV---TWNVMITGLV--------KWGELEFARSLFEEMPC--RN--------VVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 138 --------~~~~---~~~~ll~~~~--------~~~~~~~A~~~~~~~~~--~~--------~~~~~~l~~~~~~~~~~~ 188 (454)
.+.. ....+...+. ..|++++|..+|+++.+ |+ ..++..+...+...|+++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 181 SSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp HTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111 2222222222 22588999999998876 33 225677778899999999
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+|...|+++.+. .|+..++..+...+...|+++.|...++.+.+. .|.+..++..+..++...|++++|...|++
T Consensus 261 ~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 261 DAQVLLQESINL---HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHH---CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhc---CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999985 456888999999999999999999999999987 455888999999999999999999999999
Q ss_pred hhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC--
Q 012879 269 ISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-- 345 (454)
Q Consensus 269 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 345 (454)
+....| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+...-.+
T Consensus 336 a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 336 AQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 988866 56789999999999999999999999998864 33566888889999999999999999999887521111
Q ss_pred --ChhHHHHHHHHHHhc----------CChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 346 --DIKHYGCLIDMLGRA----------GRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 346 --~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
....+.....++... |++++|...|+++... +.+..++..+...|...|++++|.+.++++++..|.
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILART 494 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 122244556677777 9999999999998776 345788999999999999999999999999999988
Q ss_pred CCCc
Q 012879 413 YGGD 416 (454)
Q Consensus 413 ~~~~ 416 (454)
+...
T Consensus 495 ~~~~ 498 (537)
T 3fp2_A 495 MDEK 498 (537)
T ss_dssp CHHH
T ss_pred cHHH
Confidence 6544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.5e-21 Score=175.74 Aligned_cols=342 Identities=6% Similarity=-0.041 Sum_probs=232.0
Q ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc
Q 012879 30 HSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV 109 (454)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 109 (454)
|+..+..+...+.+.|++++|+..|+.+. ...+. +..++..+..++...|++++|...++.+.+.. +.+.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l---~~~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 71 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAV---DGDPD------NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFT 71 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hhCcc------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcc
Confidence 56678888888999999999999999988 55544 77888889999999999999999999988865 4466
Q ss_pred hhHHHHHHHHHhCCChhHHHHHHhhCCCCCc---h---hHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh
Q 012879 110 YVNTALVNMYVSLGFLKDSSKLFDEMPERNL---V---TWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTR 183 (454)
Q Consensus 110 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~---~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~ 183 (454)
..+..+..++...|++++|...|+++.+.++ . .+..+.... . ...+..+...+..
T Consensus 72 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 72 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-------E------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-------H------------HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-------H------------HHHHHHHHHHHHH
Confidence 7888888888888888888888888765322 1 222221111 1 1123345667788
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|++++|+..++++.+. .+.+...+..+...+...|+++.|...++.+.+. .|.+...+..+..++...|++++|.
T Consensus 133 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 133 GADYTAAITFLDKILEV--CVWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888773 3455667777777777777777777777777765 4556777777777777777777777
Q ss_pred HHHHHhhhcCCCh-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 012879 264 KLFEDISVERKNL-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECE 342 (454)
Q Consensus 264 ~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (454)
..|++..+..|+. ..+..+ ..+. .......+...+.+.|++++|...++.+.+...
T Consensus 209 ~~~~~a~~~~~~~~~~~~~~-----------------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 209 SEVRECLKLDQDHKRCFAHY-----------------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp HHHHHHHHHCTTCHHHHHHH-----------------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhCccchHHHHHH-----------------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 7777776655532 222111 0000 011122234456666777777777777766411
Q ss_pred CCCCh--hHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHH
Q 012879 343 VLPDI--KHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 419 (454)
Q Consensus 343 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (454)
-.+.. ..+..+..++...|++++|.+.+++.....| +..++..+...+...|++++|.+.++++++..|.+...+..
T Consensus 266 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~ 345 (359)
T 3ieg_A 266 SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345 (359)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHH
Confidence 11110 2234466677777777777777777665533 56677777888888888888888888888887777766666
Q ss_pred HHHHHHhc
Q 012879 420 MYNILAGV 427 (454)
Q Consensus 420 l~~~~~~~ 427 (454)
+..+....
T Consensus 346 l~~~~~~~ 353 (359)
T 3ieg_A 346 LEKAQRLL 353 (359)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-21 Score=178.17 Aligned_cols=297 Identities=14% Similarity=0.037 Sum_probs=224.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHH
Q 012879 142 TWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIW 218 (454)
Q Consensus 142 ~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (454)
.+..+...+...|++++|...|+++.+ .+..++..+..++...|++++|+..++++.+. .+.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHH
Confidence 444555555666666666666655542 23456666666777777777777777776653 2334566666777777
Q ss_pred ccCchhHHHHHHHhhhhcCCCC---chHHHHHHH------------HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHH
Q 012879 219 QNGDVKSCQLIHGYGEKRGFTA---FDIRVLNCL------------IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSI 282 (454)
Q Consensus 219 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 282 (454)
..|++++|...++.+.+. .| .+...+..+ ...+...|++++|.+.|+++....| +...+..+
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 160 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELR 160 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 777777777777777665 33 344444444 6788889999999999999887765 67788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH-----------
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG----------- 351 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------- 351 (454)
...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+.
T Consensus 161 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 161 AECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHH
Confidence 889999999999999999988764 3467788888888999999999999999988752 22233322
Q ss_pred -HHHHHHHhcCChHHHHHHHhcCCCCCCcH-----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 352 -CLIDMLGRAGRLEQAEKTALGIPSEITDV-----VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 352 -~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
.+...+.+.|++++|.+.++++....|+. ..+..+...+...|++++|++.++++++..|.++..+..++.++.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 23667899999999999999887764442 335567889999999999999999999999999999999999999
Q ss_pred hcCCcCcHHHHHHHHhhccc
Q 012879 426 GVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~~~ 445 (454)
+.|++++|.+.+++..+.+.
T Consensus 318 ~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HTTCHHHHHHHHHHHHTTCT
T ss_pred HcCCHHHHHHHHHHHHhcCC
Confidence 99999999999999988654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=5.8e-20 Score=175.92 Aligned_cols=407 Identities=11% Similarity=0.007 Sum_probs=302.5
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHH
Q 012879 18 HSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLH 97 (454)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 97 (454)
++...+..| .|..+|..++. +.+.|++++|..+|+++. ...+. +...|...+..+.+.|++++|..+|
T Consensus 2 le~al~~~P--~~~~~w~~l~~-~~~~~~~~~a~~~~e~al---~~~P~------~~~~w~~~~~~~~~~~~~~~a~~~~ 69 (530)
T 2ooe_A 2 AEKKLEENP--YDLDAWSILIR-EAQNQPIDKARKTYERLV---AQFPS------SGRFWKLYIEAEIKAKNYDKVEKLF 69 (530)
T ss_dssp HHHHHHHCT--TCHHHHHHHHH-HHHSSCHHHHHHHHHHHH---TTCTT------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhHhhhCC--CCHHHHHHHHH-HHHhCCHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344455555 68889999998 478899999999999998 66555 7889999999999999999999999
Q ss_pred HHHHHcCCCCCchhHHHHHHHH-HhCCChhHHHH----HHhhCC-----C-CCchhHHHHHHHHHh---------cCCHH
Q 012879 98 AVISKVGFQSHVYVNTALVNMY-VSLGFLKDSSK----LFDEMP-----E-RNLVTWNVMITGLVK---------WGELE 157 (454)
Q Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~-----~-~~~~~~~~ll~~~~~---------~~~~~ 157 (454)
+.+++.. |++..|..++... ...|+.++|.+ +|+... . ++...|...+....+ .|+++
T Consensus 70 ~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 147 (530)
T 2ooe_A 70 QRCLMKV--LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRIT 147 (530)
T ss_dssp HHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHH
T ss_pred HHHHhcC--CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHH
Confidence 9998864 5777787777533 45688777765 666542 1 345678777776654 78999
Q ss_pred HHHHHHhhCCC-CCc---chHHHHHHHH-------------HhcCChHHHHHHHHHHH------Hc--cCCCCCh-----
Q 012879 158 FARSLFEEMPC-RNV---VSWTGIIDGY-------------TRMNRSNEALALFRKMV------AC--EYTEPSE----- 207 (454)
Q Consensus 158 ~A~~~~~~~~~-~~~---~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~--~~~~~~~----- 207 (454)
.|..+|++..+ |.. ..|....... ...+++..|..++.+.. +. ..++|+.
T Consensus 148 ~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~ 227 (530)
T 2ooe_A 148 AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEA 227 (530)
T ss_dssp HHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHH
T ss_pred HHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHH
Confidence 99999998775 322 2333222211 13456777777776532 11 0124442
Q ss_pred ---hhHHhHHHHHHcc----Cch----hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh-------cCChh-------HH
Q 012879 208 ---ITILAVLPAIWQN----GDV----KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK-------CGCIF-------SA 262 (454)
Q Consensus 208 ---~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a 262 (454)
..|...+...... ++. ..+..+|+++... .|.++..|..++..+.+ .|+++ +|
T Consensus 228 ~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A 305 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 305 (530)
T ss_dssp HHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHH
Confidence 3444444333221 232 3677889998886 56688999999988876 79987 99
Q ss_pred HHHHHHhhh-cCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 263 SKLFEDISV-ERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN--RVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 263 ~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
..+|++... ..| +...|..++..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|+.++|.++|+...
T Consensus 306 ~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 306 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999987 456 6788999999999999999999999999985 443 2578888888888999999999999998
Q ss_pred HhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC-
Q 012879 339 EECEVLPDIKHYGCLIDM-LGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG- 415 (454)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~- 415 (454)
+.. +.+...|...... +...|++++|..+|++.....| +...|..++..+.+.|+.++|..+|+++++..|.++.
T Consensus 384 ~~~--~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 384 EDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp TCT--TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred hcc--CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 641 2223333332222 3468999999999998877744 6788999999999999999999999999998766554
Q ss_pred ---cHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 416 ---DYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 416 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
.|...+......|+.+.+..+.+++.+.-
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67778888889999999999998887643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2e-21 Score=177.24 Aligned_cols=284 Identities=11% Similarity=-0.061 Sum_probs=229.3
Q ss_pred HhcCCHHHHHH-HHhhCCC-----C--CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc
Q 012879 151 VKWGELEFARS-LFEEMPC-----R--NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD 222 (454)
Q Consensus 151 ~~~~~~~~A~~-~~~~~~~-----~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (454)
...|++++|.+ .|++... | +...+..+...+...|++++|+..|+++.+ ..+.+..++..+..++...|+
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcC
Confidence 34578888887 7775543 1 346688888999999999999999999987 345677888899999999999
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-hhHHH---------------HHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-VSWTS---------------IISGF 286 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~---------------l~~~~ 286 (454)
++.|...++++.+. .|.+..++..+..+|...|++++|.+.|+++....|+. ..+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLEL--KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 99999999999887 45588899999999999999999999999998876533 22221 23334
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
...|++++|...++++.+..... +..++..+...+...|++++|...++.+.+. .+.+..++..+..++...|++++
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence 48899999999999998864221 5788899999999999999999999999875 23457889999999999999999
Q ss_pred HHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC-----------CCcHHHHHHHHHhcCCcCcH
Q 012879 366 AEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY-----------GGDYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 366 A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a 433 (454)
|.+.++++... +.+..++..+..+|...|++++|...++++++..|.+ ...|..++.++...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998766 3457889999999999999999999999999999887 67899999999999999999
Q ss_pred HHHHHHH
Q 012879 434 ERLRRVM 440 (454)
Q Consensus 434 ~~~~~~~ 440 (454)
..++++-
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9987643
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-21 Score=170.22 Aligned_cols=247 Identities=12% Similarity=0.001 Sum_probs=126.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC-chhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
.+..++.++...|++++|..+++++.+. .+.+...+..+...+...| +++.|...++++.+. .|.+...+..+..
T Consensus 58 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~ 133 (330)
T 3hym_B 58 CLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGH 133 (330)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 3344444445555555555555555442 2233444445555555555 555555555555443 2334445555555
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 330 (454)
++...|++++|...|+++....| +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 134 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 212 (330)
T 3hym_B 134 SFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTA 212 (330)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHH
Confidence 55555555555555555554433 23444445555555555555555555555432 22344455555555555555555
Q ss_pred HHHHHHHHHhcC-------CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHH
Q 012879 331 LNFFDKMVEECE-------VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERV 402 (454)
Q Consensus 331 ~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~ 402 (454)
...++.+.+... .+....++..+..+|...|++++|.+.++++... +.+..++..+...+...|++++|.+.
T Consensus 213 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 292 (330)
T 3hym_B 213 EKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDY 292 (330)
T ss_dssp HHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHH
Confidence 555555544310 0222345555555555556665555555555443 22344555555556666666666666
Q ss_pred HHHHHHhhcCCCCcHHHHHHHH
Q 012879 403 TRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
++++++..|.++..+..++.++
T Consensus 293 ~~~al~~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 293 FHTALGLRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHTTTTTCSCCHHHHHHHHHHH
T ss_pred HHHHHccCCCchHHHHHHHHHH
Confidence 6666655555555555555555
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-20 Score=165.65 Aligned_cols=287 Identities=13% Similarity=0.000 Sum_probs=233.4
Q ss_pred CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHH
Q 012879 105 FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGII 178 (454)
Q Consensus 105 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~ 178 (454)
.+.+...+..+...+...|++++|..+|+++.+ .+...+..++..+...|++++|..+++++.+ .+...+..+.
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 97 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 456677777888888888888888888888764 3445666777888888899988888887764 3567888888
Q ss_pred HHHHhcC-ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 179 DGYTRMN-RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 179 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
..+...| ++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+. .|.+...+..+...|...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTL--EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL--MKGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTT--CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHh
Confidence 8999999 899999999998873 3456778889999999999999999999999887 3446677777999999999
Q ss_pred ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CCCcHHHHHHHHHHHhcCCChH
Q 012879 258 CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVG--------LKPNRVTFLSVLNACSHGGLVE 328 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~~~~~ 328 (454)
++++|...|+++....| +...+..+...+...|++++|...++++.+.. .+....++..+..++...|+++
T Consensus 174 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 174 NSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999988766 67788899999999999999999999987631 1334568888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHH-HcCCChh
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGAC-SFHGNVE 397 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~ 397 (454)
+|...++.+.+. .+.+...+..+..+|.+.|++++|.+.++++....| +...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 999999999875 234577889999999999999999999999998855 667788888877 4566653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-19 Score=168.03 Aligned_cols=367 Identities=11% Similarity=-0.011 Sum_probs=303.5
Q ss_pred hhhhhhHHHHHHHHHc----cCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc----cCCcchHhHHHHH
Q 012879 28 LHHSQLFNTLLHFYSL----AESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT----LSHPNLGTQLHAV 99 (454)
Q Consensus 28 ~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 99 (454)
..++.++..+...|.. .+++++|+..|++.. +.+ +...+..|...+.. .+++++|...|++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~---~~~--------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 104 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAA---EQG--------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKK 104 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH---HTT--------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH---HCC--------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 3567888888888888 899999999999997 443 66688888888888 8999999999999
Q ss_pred HHHcCCCCCchhHHHHHHHHHh----CCChhHHHHHHhhCCC-CCchhHHHHHHHHHh----cCCHHHHHHHHhhCCC-C
Q 012879 100 ISKVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDEMPE-RNLVTWNVMITGLVK----WGELEFARSLFEEMPC-R 169 (454)
Q Consensus 100 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~-~ 169 (454)
..+.| ++..+..|...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|.+.|++..+ .
T Consensus 105 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~ 181 (490)
T 2xm6_A 105 AALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG 181 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 98876 56677778888888 8899999999998875 456678888888887 7899999999987654 5
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCc
Q 012879 170 NVVSWTGIIDGYTR----MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAF 241 (454)
Q Consensus 170 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 241 (454)
+...+..+...|.. .+++++|+.+|++..+. .+...+..+...+.. .++.++|...+++..+.+
T Consensus 182 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---- 253 (490)
T 2xm6_A 182 NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---- 253 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----
T ss_pred CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence 67788888888888 89999999999999885 356777788888875 889999999999998875
Q ss_pred hHHHHHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCcHH
Q 012879 242 DIRVLNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWTSIISGFAMH-----GMGKEAVENFGRMQKVGLKPNRV 312 (454)
Q Consensus 242 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~ 312 (454)
++..+..+...|.. .+++++|...|++..+. .+...+..+...|... +++++|...|++..+.| +..
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~ 329 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ-GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DAT 329 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHH
Confidence 56677788888888 89999999999998774 4667778888888887 89999999999999875 345
Q ss_pred HHHHHHHHHhcCC---ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHH
Q 012879 313 TFLSVLNACSHGG---LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRT 385 (454)
Q Consensus 313 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~ 385 (454)
.+..+...+...| ++++|.++|+...+. .+...+..+...|.. .+++++|.++|++..+. .+...+..
T Consensus 330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~ 404 (490)
T 2xm6_A 330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHH
Confidence 6666666776656 889999999999875 357788888899988 89999999999987765 46778888
Q ss_pred HHHHHHc----CCChhHHHHHHHHHHHhhcC---CCCcHHHHHHHHH
Q 012879 386 LLGACSF----HGNVEMGERVTRKILEMERG---YGGDYVLMYNILA 425 (454)
Q Consensus 386 l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~ 425 (454)
+...|.. .++.++|...|+++.+.+|. ++.....++.++.
T Consensus 405 Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~ 451 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA 451 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence 9999987 89999999999999999943 5555555555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.7e-21 Score=172.86 Aligned_cols=264 Identities=8% Similarity=-0.073 Sum_probs=219.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
+...+..+...+.+.|++++|+..|+++.+. .+.+..++..+...+...|++++|...++++.+. .|.+..++..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 139 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMAL 139 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 4556888899999999999999999999884 4567888999999999999999999999999887 46578899999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCC-hh----------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcHHHHHHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKN-LV----------SWTSIISGFAMHGMGKEAVENFGRMQKVGLK-PNRVTFLSV 317 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l 317 (454)
..+|...|++++|...|+++....|+ .. .+..+...+...|++++|...++++.+.... ++..++..+
T Consensus 140 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 140 AVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 99999999999999999999886553 22 2334578889999999999999999886422 257888999
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCCh
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNV 396 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 396 (454)
...+...|++++|...++++.+. .+.+..++..+..+|...|++++|.+.|+++....| +..++..+..+|...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 99999999999999999999875 344678899999999999999999999999877644 578899999999999999
Q ss_pred hHHHHHHHHHHHhhcC------------CCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 397 EMGERVTRKILEMERG------------YGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 397 ~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
++|...++++++..|. +...|..++.++...|+.+.+.++.++
T Consensus 298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999887 256788999999999999888877665
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-19 Score=171.52 Aligned_cols=367 Identities=10% Similarity=-0.031 Sum_probs=247.2
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHc-----C---CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCC-------
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKV-----G---FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPE------- 137 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------- 137 (454)
....|+.+...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 5678999999999999999999999987652 1 122346788999999999999999999887642
Q ss_pred ---C-CchhHHHHHHHHHhc--CCHHHHHHHHhhCCC--C-CcchHHHHHHH---HHhcCChHHHHHHHHHHHHccCCCC
Q 012879 138 ---R-NLVTWNVMITGLVKW--GELEFARSLFEEMPC--R-NVVSWTGIIDG---YTRMNRSNEALALFRKMVACEYTEP 205 (454)
Q Consensus 138 ---~-~~~~~~~ll~~~~~~--~~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~ 205 (454)
+ ...++.....++.+. +++++|++.|++..+ | ++..+..+..+ +...++.++|++.+++..+. .+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCc
Confidence 1 234555555555544 579999999998764 4 34455555444 44568889999999998874 344
Q ss_pred ChhhHHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHH
Q 012879 206 SEITILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWT 280 (454)
Q Consensus 206 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~ 280 (454)
+..++..+...+.. .++.+.|.+.+++.... .|.+..++..+...|...|++++|...|++..+..| +..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 56666666555544 46778999999998887 466888999999999999999999999999988877 555666
Q ss_pred HHHHHHHhc-------------------CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 281 SIISGFAMH-------------------GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 281 ~l~~~~~~~-------------------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
.+..+|... +..+.|...+++..+.. +.+..++..+...+...|++++|...|++..+.
T Consensus 286 ~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~- 363 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK- 363 (472)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc-
Confidence 666555322 23567777777776643 234456777888899999999999999998864
Q ss_pred CCCCCh--hHHHHHHH-HHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 342 EVLPDI--KHYGCLID-MLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 342 ~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
...+.. ..+..+.. .+...|+.++|++.|++.....|+...... ....+..++++.++.+|.++.+|.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~ 434 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGADSEALH 434 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCCCHHHHH
Confidence 322221 12223322 234678999999999887766555433222 234456778888888999999999
Q ss_pred HHHHHHHhcCCcCcHHHHHHHHhhcccccCCCCcCC
Q 012879 419 LMYNILAGVGRFGDAERLRRVMDERNAFKVPGCSLV 454 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~s~~ 454 (454)
.++.++...|++++|.+.+++..+.+.....+.+|+
T Consensus 435 ~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 435 VLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp HHHHHHHHHHHCC-----------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 999999999999999999999999888777788775
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.5e-18 Score=161.16 Aligned_cols=351 Identities=11% Similarity=-0.046 Sum_probs=297.1
Q ss_pred ChhhHHHHHHHHhc----cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHh----CCChhHHHHHHhhCCC-CCchhH
Q 012879 73 DSFTYSFLIRTCAT----LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS----LGFLKDSSKLFDEMPE-RNLVTW 143 (454)
Q Consensus 73 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~ 143 (454)
+..++..+...+.. .+++++|...|+...+.| ++..+..|...|.. .+++++|...|++..+ .+...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 67788888888887 899999999999998875 56678888899988 8999999999998875 456678
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhhCCC-CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCCChhhHHhHH
Q 012879 144 NVMITGLVK----WGELEFARSLFEEMPC-RNVVSWTGIIDGYTR----MNRSNEALALFRKMVACEYTEPSEITILAVL 214 (454)
Q Consensus 144 ~~ll~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 214 (454)
..+...|.. .+++++|...|++..+ .++..+..+...|.. .+++++|+..|++..+. .+...+..+.
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg 190 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GNVWSCNQLG 190 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHH
Confidence 888888888 8899999999998765 456778888888887 78999999999999885 3677888888
Q ss_pred HHHHc----cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHHHHHHHH
Q 012879 215 PAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWTSIISGF 286 (454)
Q Consensus 215 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~ 286 (454)
..+.. .++.++|...+++..+.| ++..+..+...|.. .+++++|..+|++..+. .+...+..+...|
T Consensus 191 ~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~y 265 (490)
T 2xm6_A 191 YMYSRGLGVERNDAISAQWYRKSATSG----DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-GNSIAQFRLGYIL 265 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHhcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 88887 899999999999999875 56778888888886 88999999999998874 4666777788888
Q ss_pred Hh----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 012879 287 AM----HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG-----GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 287 ~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
.. .++.++|...|++..+.| +...+..+...+... +++++|..+|+...+. + +...+..+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y 338 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIY 338 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHH
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHH
Confidence 77 899999999999998775 445666677777766 8999999999999875 3 456777788888
Q ss_pred HhcC---ChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh----
Q 012879 358 GRAG---RLEQAEKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAG---- 426 (454)
Q Consensus 358 ~~~g---~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 426 (454)
...| ++++|.++|++..+. .+...+..+...|.. .+++++|++.++++.+.+ ++..+..++.+|.+
T Consensus 339 ~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 339 FRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 8766 889999999988766 577888889999988 899999999999999864 57788899999998
Q ss_pred cCCcCcHHHHHHHHhhccc
Q 012879 427 VGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~ 445 (454)
.+++++|.+.+++..+.+.
T Consensus 416 ~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp CCCHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988773
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-20 Score=166.19 Aligned_cols=284 Identities=12% Similarity=0.065 Sum_probs=133.0
Q ss_pred cccCCCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHH
Q 012879 4 LQNSQTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRT 83 (454)
Q Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~ 83 (454)
|....++.+.+..+++.+ +++.+|..+..++.+.|++++|++.|.+. + |..+|..++.+
T Consensus 12 ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-----------~---D~~~y~~V~~~ 70 (449)
T 1b89_A 12 LIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----------D---DPSSYMEVVQA 70 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----------C---CHHHHHHHHHH
Confidence 344556666777777666 33469999999999999999999999765 3 77799999999
Q ss_pred HhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 012879 84 CATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLF 163 (454)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~ 163 (454)
+...|++++|..+++..++. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|..+|
T Consensus 71 ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y 145 (449)
T 1b89_A 71 ANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLY 145 (449)
T ss_dssp ----------------------------------------CHHHHTTTTT---CC----------------CTTTHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999988877764 4567889999999999999999888875 477789999999999999999999999
Q ss_pred hhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchH
Q 012879 164 EEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDI 243 (454)
Q Consensus 164 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 243 (454)
..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+.. .+
T Consensus 146 ~~a-----~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~------~a 207 (449)
T 1b89_A 146 NNV-----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV------HA 207 (449)
T ss_dssp HHT-----TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTT------CH
T ss_pred HHh-----hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHh------CH
Confidence 988 48999999999999999999999988 2688999999999999999999766655331 34
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCC------cHHHH
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMH--GMGKEAVENFGRMQKVGLKP------NRVTF 314 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~ 314 (454)
.....++..|.+.|.+++|..+++......+ ....|+-+.-+|++- ++..+.++.|.. +-+++| +...|
T Consensus 208 d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w 285 (449)
T 1b89_A 208 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLW 285 (449)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCH
T ss_pred hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHH
Confidence 4455789999999999999999999887644 667888887777764 344444444432 122333 34567
Q ss_pred HHHHHHHhcCCChHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNF 333 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~ 333 (454)
..+...|.+.++++.|...
T Consensus 286 ~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 286 AELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhhchHHHHHHH
Confidence 7788888888888887653
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-19 Score=161.76 Aligned_cols=352 Identities=10% Similarity=0.015 Sum_probs=172.4
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhC
Q 012879 43 LAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSL 122 (454)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 122 (454)
+.|++++|.++++++. +..+|..++.++.+.|++++|.+.|.+ .+|..+|..++..+...
T Consensus 15 ~~~~ld~A~~fae~~~--------------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~ 74 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN--------------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTS 74 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC--------------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhC
Confidence 5688999999999995 445899999999999999999999964 35778999999999999
Q ss_pred CChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 012879 123 GFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVAC 200 (454)
Q Consensus 123 g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 200 (454)
|++++|+.+++...+ +++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+
T Consensus 75 g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 75 GNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ----------------------------------CHHHHTTTTT---CC----------------CTTTHHHHHHHT---
T ss_pred CCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 999999998887765 566789999999999999999998885 478889999999999999999999999977
Q ss_pred cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHH
Q 012879 201 EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWT 280 (454)
Q Consensus 201 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (454)
..|..++.++.+.|+++.|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-..
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad~l~ 211 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHADELE 211 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHHHHH
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHhhHH
Confidence 36899999999999999999999988 178899999999999999999977766644 2333345
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC------ChhHHHHHH
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP------DIKHYGCLI 354 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~ 354 (454)
.++..|.+.|.+++|..+++...... +-....|+.+..++++- ++++..+.++.....-+++| +...|..++
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~ 289 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 289 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 68899999999999999999987654 44566777777777664 45555555555544435554 467889999
Q ss_pred HHHHhcCChHHHHHHHhcCCCC-------------CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 355 DMLGRAGRLEQAEKTALGIPSE-------------ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~-------------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
-.|..-++++.|....-+-... ..+...|-..+.-|. +....++.-+...+. | .--....+
T Consensus 290 ~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~--~--~ld~~r~v 363 (449)
T 1b89_A 290 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLS--P--RLDHTRAV 363 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHG--G--GCCHHHHH
T ss_pred HHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHH--h--ccCcHHHH
Confidence 9999999999998766554322 334445555555554 222223333332221 1 11224556
Q ss_pred HHHHhcCCcCcHHHHHHHHhhccc
Q 012879 422 NILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
..+.+.|...-+...+..+...+.
T Consensus 364 ~~~~~~~~l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 364 NYFSKVKQLPLVKPYLRSVQNHNN 387 (449)
T ss_dssp HHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred HHHHHcCCcHHHHHHHHHHHHhhH
Confidence 666677777777776666665543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-19 Score=162.51 Aligned_cols=266 Identities=11% Similarity=-0.056 Sum_probs=221.6
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
+...+..+...+...|++++|..+|+++.+. .+.+...+..+...+...|+++.|...++++.+. .|.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcCCHHHHHHH
Confidence 3456777888889999999999999998874 3556778888888999999999999999999887 45578889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCCh-hhHHHH--------------HH-HHHhcCChhHHHHHHHHHHhCCCCCcHHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKNL-VSWTSI--------------IS-GFAMHGMGKEAVENFGRMQKVGLKPNRVT 313 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 313 (454)
..++...|++++|.+.|+++....|+. ..+..+ .. .+...|++++|...++++.+.. +.+...
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 999999999999999999988875533 333333 22 3677889999999999998864 336788
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHc
Q 012879 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSF 392 (454)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~ 392 (454)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.++++.... .+..++..+...+..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 888999999999999999999999875 23457788999999999999999999999887663 457889999999999
Q ss_pred CCChhHHHHHHHHHHHhhcC------------CCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 393 HGNVEMGERVTRKILEMERG------------YGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
.|++++|.+.++++++..|. +...+..++.++.+.|++++|..++++..+
T Consensus 253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999998 567888999999999999999999876544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-18 Score=152.35 Aligned_cols=270 Identities=10% Similarity=0.010 Sum_probs=194.2
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 149 GLVKWGELEFARSLFEEMPCRNV----VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
-....|+++.|+..++.....++ .....+.++|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP-----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT-----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc-----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34456777777777766554322 2334566777777777777765533 23456667777777777777777
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.|.+.++++...+..|.++..+..+..++...|++++|++.+++ +.+...+..++..+.+.|++++|.+.++++.+
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 158 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----GDSLECMAMTVQILLKLDRLDLARKELKKMQD 158 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777777776654565777777888888888888888888887 35777888888888888888888888888887
Q ss_pred CCCCCcHHHH---HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cH
Q 012879 305 VGLKPNRVTF---LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DV 380 (454)
Q Consensus 305 ~~~~p~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~ 380 (454)
.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++....| +.
T Consensus 159 ~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~ 234 (291)
T 3mkr_A 159 QD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHP 234 (291)
T ss_dssp HC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence 63 432211 22334445668899999999999875 456778888888999999999999999998777634 67
Q ss_pred hHHHHHHHHHHcCCChhH-HHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHH
Q 012879 381 VVWRTLLGACSFHGNVEM-GERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAER 435 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (454)
.++..++..+...|+.++ +.++++++++..|.++. +.....+.+.++++..
T Consensus 235 ~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~----~~d~~~~~~~fd~~~~ 286 (291)
T 3mkr_A 235 ETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF----IKEYRAKENDFDRLVL 286 (291)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHHH
Confidence 788888988888998875 57899999999888763 3344455555555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=165.62 Aligned_cols=283 Identities=14% Similarity=0.064 Sum_probs=211.5
Q ss_pred cCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHH-HHHHHHHccCCCC--ChhhHHhHHHHHHccCchhHHHHH
Q 012879 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALA-LFRKMVACEYTEP--SEITILAVLPAIWQNGDVKSCQLI 229 (454)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~ 229 (454)
.+.++.+...|+.+...+.. ++...|++++|+. .|++........| +...+..+...+...|++++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555556655543322 3445689999998 8887665312222 356788999999999999999999
Q ss_pred HHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 012879 230 HGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLK 308 (454)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 308 (454)
++++.+. .|.+..++..+..++...|++++|...|+++....| +..++..+...+...|++++|...++++.+....
T Consensus 87 ~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 164 (368)
T 1fch_A 87 FEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA 164 (368)
T ss_dssp HHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999987 566889999999999999999999999999988866 7788999999999999999999999999986432
Q ss_pred CcHHHHHH---------------HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 309 PNRVTFLS---------------VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 309 p~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
. ...+.. .+..+...|++++|...++.+.+.....++..++..+...|.+.|++++|...++++
T Consensus 165 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 243 (368)
T 1fch_A 165 Y-AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAA 243 (368)
T ss_dssp T-GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred c-HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 222211 233334889999999999999986322225788999999999999999999999998
Q ss_pred CCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 374 PSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 374 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
....| +..++..+...+...|++++|+..++++++..|.+...+..++.++.+.|++++|.+.+++..+...
T Consensus 244 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 316 (368)
T 1fch_A 244 LSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQR 316 (368)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 77634 5789999999999999999999999999999999999999999999999999999999999887543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-17 Score=156.65 Aligned_cols=387 Identities=8% Similarity=0.010 Sum_probs=289.0
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHH-hc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTC-AT 86 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~-~~ 86 (454)
.++.+.++.+++...+..| .+...|..++..+.+.|++++|..+|+++. ... | +...|...+... ..
T Consensus 25 ~~~~~~a~~~~e~al~~~P--~~~~~w~~~~~~~~~~~~~~~a~~~~~ral---~~~----p---~~~lw~~~~~~~~~~ 92 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQFP--SSGRFWKLYIEAEIKAKNYDKVEKLFQRCL---MKV----L---HIDLWKCYLSYVRET 92 (530)
T ss_dssp SSCHHHHHHHHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TTC----C---CHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH---hcC----C---ChHHHHHHHHHHHHH
Confidence 5678889999999998876 788899999999999999999999999997 332 5 666777777533 45
Q ss_pred cCCcchHhH----HHHHHHHc-CCCC-CchhHHHHHHHHHh---------CCChhHHHHHHhhCCC-CCc---hhHHHHH
Q 012879 87 LSHPNLGTQ----LHAVISKV-GFQS-HVYVNTALVNMYVS---------LGFLKDSSKLFDEMPE-RNL---VTWNVMI 147 (454)
Q Consensus 87 ~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~---~~~~~ll 147 (454)
.|+++.|.+ +|+..+.. |..| +...|...+....+ .|+++.|..+|++..+ |.. ..|....
T Consensus 93 ~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~ 172 (530)
T 2ooe_A 93 KGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYN 172 (530)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHH
Confidence 678887766 77766653 5444 45678877777655 6899999999999875 332 2333222
Q ss_pred HHH-------------HhcCCHHHHHHHHhh-------CC------CCC--------cchHHHHHHHHHhc----CCh--
Q 012879 148 TGL-------------VKWGELEFARSLFEE-------MP------CRN--------VVSWTGIIDGYTRM----NRS-- 187 (454)
Q Consensus 148 ~~~-------------~~~~~~~~A~~~~~~-------~~------~~~--------~~~~~~l~~~~~~~----~~~-- 187 (454)
... .+.++++.|..++.. +. .|+ ...|...+...... ++.
T Consensus 173 ~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~ 252 (530)
T 2ooe_A 173 KYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 252 (530)
T ss_dssp HHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHH
T ss_pred HHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchh
Confidence 211 134567777766654 21 122 13444444333222 233
Q ss_pred --HHHHHHHHHHHHccCCCCChhhHHhHHHHHHc-------cCchh-------HHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 188 --NEALALFRKMVACEYTEPSEITILAVLPAIWQ-------NGDVK-------SCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 188 --~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+|++.... .+.+...|...+..+.+ .|+++ .|..++++..+. ..|.+...+..++.
T Consensus 253 ~~~~a~~~y~~al~~--~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~ 329 (530)
T 2ooe_A 253 ITKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYAD 329 (530)
T ss_dssp HHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-TCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-hCcccHHHHHHHHH
Confidence 4788899999884 45667888888888775 79987 899999999873 25668999999999
Q ss_pred HHHhcCChhHHHHHHHHhhhcCCC-h-hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH-HHhcCCChH
Q 012879 252 TYAKCGCIFSASKLFEDISVERKN-L-VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN-ACSHGGLVE 328 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~ 328 (454)
.+.+.|++++|..+|+++.+..|+ . ..|...+..+.+.|++++|.++|++..+... .+...+..... .+...|+.+
T Consensus 330 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~ 408 (530)
T 2ooe_A 330 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKS 408 (530)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHH
T ss_pred HHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChh
Confidence 999999999999999999998774 3 4788889989999999999999999988632 22333332222 233589999
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC---Cc--HhHHHHHHHHHHcCCChhHHHHHH
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI---TD--VVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---p~--~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
+|..+|+...+.. +.+...|..++..+.+.|+.++|..+|++..... |+ ...|...+......|+.+.+..+.
T Consensus 409 ~A~~~~e~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~ 486 (530)
T 2ooe_A 409 VAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 486 (530)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999998752 3457888999999999999999999999987652 22 347888888888999999999999
Q ss_pred HHHHHhhcC
Q 012879 404 RKILEMERG 412 (454)
Q Consensus 404 ~~~~~~~~~ 412 (454)
+++.+.-|.
T Consensus 487 ~r~~~~~p~ 495 (530)
T 2ooe_A 487 KRRFTAFRE 495 (530)
T ss_dssp HHHHHHTHH
T ss_pred HHHHHHCch
Confidence 999998885
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.2e-18 Score=164.39 Aligned_cols=375 Identities=9% Similarity=-0.041 Sum_probs=248.1
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcC--CCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcC--
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTH--SHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVG-- 104 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 104 (454)
+....||.+...+...|++++|++.|++..++.+. +...-| ....+|+.+..++...|++++|...++++.+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~--~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEI--RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTT--TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccch--HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 44668999999999999999999999988754221 111002 056789999999999999999999999887631
Q ss_pred ----CCC-CchhHHHHHHHHHh--CCChhHHHHHHhhCCC--CC-chhHHHHHHH---HHhcCCHHHHHHHHhhCCC---
Q 012879 105 ----FQS-HVYVNTALVNMYVS--LGFLKDSSKLFDEMPE--RN-LVTWNVMITG---LVKWGELEFARSLFEEMPC--- 168 (454)
Q Consensus 105 ----~~~-~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~---~~~~~~~~~A~~~~~~~~~--- 168 (454)
..+ ...++..+..++.. .+++++|+..|++..+ |+ +..+..+..+ +...++.++|++.+++..+
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 111 23456655555554 4579999999999874 54 3344444444 3456777888888876543
Q ss_pred CCcchHHHHHHHHHh----cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 169 RNVVSWTGIIDGYTR----MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
.+..++..+...+.. .|++++|.+.+++... ..+.+..++..+...+...|+++.|...++++.+. .|.+..
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 282 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY 282 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence 344556555555544 4678899999999887 34566788999999999999999999999999987 566788
Q ss_pred HHHHHHHHHHhc-------------------CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 245 VLNCLIDTYAKC-------------------GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 245 ~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
++..+..+|... +.++.|...|++.....| +..++..+...+...|++++|+..|++..+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 888887776532 235778888888877666 567889999999999999999999999988
Q ss_pred CCCCCcHH--HHHHHHH-HHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcH
Q 012879 305 VGLKPNRV--TFLSVLN-ACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDV 380 (454)
Q Consensus 305 ~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~ 380 (454)
....|... .+..+.. .....|+.++|+..|++..+. .|+........ ..+.++++..... +.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i---~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI---NQKSREKEKMK---------DKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS---CCCCHHHHHHH---------HHHHHHHHHHHHHCC-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CcccHHHHHHH---------HHHHHHHHHHHHhCCCCH
Confidence 65444322 2222222 345789999999999998864 45543322222 2333444443333 3467
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
.+|..+...|...|++++|++.|+++++.++.++.+...++
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 89999999999999999999999999999998877665544
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-19 Score=164.31 Aligned_cols=260 Identities=12% Similarity=0.020 Sum_probs=198.5
Q ss_pred CchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHH
Q 012879 139 NLVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLP 215 (454)
Q Consensus 139 ~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 215 (454)
+...+..+...+.+.|++++|.++|+++.+ .+..++..+..++...|++++|+..|+++.+. .+.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL--QPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Confidence 445677778888888888888888887753 35677888888888888888888888888874 3455778888888
Q ss_pred HHHccCchhHHHHHHHhhhhcCCCCchHH----------HHHHHHHHHHhcCChhHHHHHHHHhhhcCC---ChhhHHHH
Q 012879 216 AIWQNGDVKSCQLIHGYGEKRGFTAFDIR----------VLNCLIDTYAKCGCIFSASKLFEDISVERK---NLVSWTSI 282 (454)
Q Consensus 216 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~l 282 (454)
.+...|++++|...++++.+. .|.+.. .+..+...+...|++++|.+.|+++....| +..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 888888888888888888875 232222 233457888888999999999999888765 46788888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
...+...|++++|+..++++.+.. +.+..++..+..++...|++++|...|+++.+. .+.+..++..+..+|.+.|+
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 888999999999999999888763 336778888888899999999999999998875 23347788888899999999
Q ss_pred hHHHHHHHhcCCCCCC-------------cHhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 363 LEQAEKTALGIPSEIT-------------DVVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
+++|.+.|+++....| +..+|..+..++...|+.+.+..+.++
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999998888765522 256788899999999999888777665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=151.53 Aligned_cols=251 Identities=8% Similarity=0.032 Sum_probs=208.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCCh--hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSE--ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK 255 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (454)
++-....|+++.|+..+++... ..|+. .....+.+++...|+++.|...++.. .|++..++..+...+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~ 77 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLAS 77 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcC
Confidence 4556678999999999987653 23443 35567789999999999999866541 45588899999999999
Q ss_pred cCChhHHHHHHHHhhhc--CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHH
Q 012879 256 CGCIFSASKLFEDISVE--RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332 (454)
Q Consensus 256 ~g~~~~a~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 332 (454)
.|+.++|++.++++... .| +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|.+
T Consensus 78 ~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 78 HSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp STTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999998765 36 566777788999999999999999987 4577888899999999999999999
Q ss_pred HHHHHHHhcCCCCChhHH---HHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 333 FFDKMVEECEVLPDIKHY---GCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
.++.+.+. .|+.... ..++..+...|++++|..+|+++... +.+...++.+..++.+.|++++|++.++++++
T Consensus 152 ~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 152 ELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999876 3553211 22334455569999999999998877 55788999999999999999999999999999
Q ss_pred hhcCCCCcHHHHHHHHHhcCCcCc-HHHHHHHHhhccc
Q 012879 409 MERGYGGDYVLMYNILAGVGRFGD-AERLRRVMDERNA 445 (454)
Q Consensus 409 ~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~ 445 (454)
..|.++.++..++.++...|+.++ +.++++++.+.+.
T Consensus 229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999999976 5788888877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-18 Score=154.83 Aligned_cols=278 Identities=9% Similarity=-0.106 Sum_probs=201.0
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.+...|..+...+...|++++|+.+|+++. ...+. +..++..+..++...|++++|...++.+.+.. +.+
T Consensus 19 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 88 (327)
T 3cv0_A 19 MYHENPMEEGLSMLKLANLAEAALAFEAVC---QAAPE------REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKD 88 (327)
T ss_dssp GGSSCHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred hhhHHHHHHHHHHHHhccHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCC
Confidence 456677788888999999999999999988 55554 77888889999999999999999999998875 456
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-chhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHH-HH-HHHh
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-LVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGI-ID-GYTR 183 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l-~~-~~~~ 183 (454)
..++..+..++...|++++|...++++.+ |+ ...+..+...+ ++......+ .. .+..
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~ 150 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAA 150 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------------------------CCTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHH
Confidence 77888888888899999999888887653 21 11222210000 111111122 12 3666
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
.|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+. .|.+...+..+..++...|++++|.
T Consensus 151 ~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEM--NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 77788888888887763 3446677777888888888888888888888776 3546778888888888888888888
Q ss_pred HHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----------cHHHHHHHHHHHhcCCChHHHH
Q 012879 264 KLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-----------NRVTFLSVLNACSHGGLVEEGL 331 (454)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----------~~~~~~~l~~~~~~~~~~~~a~ 331 (454)
..|+++.+..| +..++..+...+...|++++|.+.++++.+..... +...+..+..++...|++++|.
T Consensus 227 ~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 306 (327)
T 3cv0_A 227 DAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE 306 (327)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence 88888777655 56777888888888888888888888877643221 4667777888888888888888
Q ss_pred HHHHHHH
Q 012879 332 NFFDKMV 338 (454)
Q Consensus 332 ~~~~~~~ 338 (454)
.+++...
T Consensus 307 ~~~~~~l 313 (327)
T 3cv0_A 307 LTYAQNV 313 (327)
T ss_dssp HHTTCCS
T ss_pred HHHHHHH
Confidence 8776543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.1e-16 Score=154.35 Aligned_cols=345 Identities=13% Similarity=0.094 Sum_probs=267.4
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
-|+.-....+++|...|.+.+|+++++++. ..+. +-+-+...-+.++.+..+. +..+..++.+.....
T Consensus 983 ~~PeeVs~~vKaf~~aglp~EaieLLEKiv---l~~s---~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----- 1050 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTADLPNELIELLEKIV---LDNS---VFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----- 1050 (1630)
T ss_pred cCHHHhHHHHHHHHhCCCHHHHHHHHHHHH---cCCC---cccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-----
Confidence 445555778889999999999999999997 3332 1111445556677666666 566666666655422
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChH
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSN 188 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 188 (454)
...-+...+...|.+++|..+|++.... ....+.+ +-..+++++|.++.++.. ++.+|..+..++...|+++
T Consensus 1051 --d~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VL---ie~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1051 --DAPDIANIAISNELFEEAFAIFRKFDVN-TSAVQVL---IEHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred --cHHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHH---HHHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 1344778888999999999999997521 1112222 227889999999998774 4678889999999999999
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+|++.|.+. .|...|..++.++.+.|+++++.+++....+.. + ++.+.+.++.+|++.+++++...+.
T Consensus 1123 EAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~-e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1123 EAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--R-ESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--c-cccccHHHHHHHHhhcCHHHHHHHH--
Confidence 999999654 567788889999999999999999999888753 2 4445556999999999988644443
Q ss_pred hhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChh
Q 012879 269 ISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIK 348 (454)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 348 (454)
..++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++. .+..
T Consensus 1191 ---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA-------~n~~ 1251 (1630)
T 1xi4_A 1191 ---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTR 1251 (1630)
T ss_pred ---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-------CCHH
Confidence 1367777888899999999999999999884 47889999999999999999998876 2557
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
+|..+..+|...|++..|......+.. ++..+..++..|.+.|.+++|+.+++..+..++.+...|..++.++.+.
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLHIVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHhhhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence 888888999999999999988776433 5666778899999999999999999999988877877887777777664
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.79 E-value=7e-16 Score=153.90 Aligned_cols=371 Identities=10% Similarity=0.061 Sum_probs=286.9
Q ss_pred CCCCchhHHHHHHHHhhhh-hhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 8 QTPNNITTQIHSHLLTTNS-LLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
.+.+..+..+++.+...++ |..+....+.++.+..+. +..+..+..+... . . + ..-+...+..
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd---~------~---d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD---N------Y---D---APDIANIAIS 1061 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh---h------c---c---HHHHHHHHHh
Confidence 4566777777777775443 345667777788877777 5566666666653 1 1 2 3457788889
Q ss_pred cCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhC
Q 012879 87 LSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEM 166 (454)
Q Consensus 87 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~ 166 (454)
.|.+++|..+|++.. ......+.++ -..|++++|.++.+++ .+..+|..+..++.+.|++++|++.|.+.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kEAIdsYiKA 1131 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKEAIDSYIKA 1131 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 999999999999852 1112223232 2788999999999977 44678999999999999999999999775
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHH
Q 012879 167 PCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL 246 (454)
Q Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (454)
.|...|..++.++.+.|++++|++.|...++. . +++...+.++.+|++.++++....+. + .+ +...+
T Consensus 1132 --dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~--~e~~Idt~LafaYAKl~rleele~fI----~---~~-n~ad~ 1198 (1630)
T 1xi4_A 1132 --DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAKTNRLAELEEFI----N---GP-NNAHI 1198 (1630)
T ss_pred --CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC-CHHHH
Confidence 67788899999999999999999999988875 2 44444445899999999988655443 2 22 55667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL 326 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 326 (454)
..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+..+|...|+
T Consensus 1199 ~~iGd~le~eg~YeeA~~~Y~kA-------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~E 1265 (1630)
T 1xi4_A 1199 QQVGDRCYDEKMYDAAKLLYNNV-------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKE 1265 (1630)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhh-------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhH
Confidence 78999999999999999999986 36999999999999999999999876 356899999999999999
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHc--CCChhHHHHHH
Q 012879 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSF--HGNVEMGERVT 403 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~--~g~~~~A~~~~ 403 (454)
+..|......+ ..++..+..++..|.+.|.+++|+.+++...... -....|.-+...|++ -++..++.+.|
T Consensus 1266 f~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f 1339 (1630)
T 1xi4_A 1266 FRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 1339 (1630)
T ss_pred HHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99998766543 2356677899999999999999999999988763 344567667776665 45667777777
Q ss_pred HHHHHhhc-----CCCCcHHHHHHHHHhcCCcCcHHHH
Q 012879 404 RKILEMER-----GYGGDYVLMYNILAGVGRFGDAERL 436 (454)
Q Consensus 404 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (454)
..-....+ .....|..+...|.+.|+++.|...
T Consensus 1340 ~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1340 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 76655444 3566799999999999999999843
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.6e-17 Score=138.91 Aligned_cols=224 Identities=8% Similarity=-0.013 Sum_probs=179.7
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch-------HH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD-------IR 244 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~ 244 (454)
..+..+...+...|++++|+..|+++.+. . .+..++..+..++...|++++|...++.+.+.. |.+ ..
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~ 80 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--REMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--cccccchHHHHH
Confidence 46777888888999999999999998886 4 778888888889999999999999888887752 212 57
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG 324 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 324 (454)
++..+..+|...|++++|...|+++....|+. ..+...|++++|...++++.... +.+...+..+...+...
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88888899999999999999999988876663 34566678888999988888753 22455677778888888
Q ss_pred CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHH
Q 012879 325 GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 325 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
|++++|...++.+.+. .+.+..++..+..+|...|++++|.+.++++....| +..++..+...+...|++++|.+.+
T Consensus 153 ~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999988875 234567788888888888888888888888766533 4677888888888888999999888
Q ss_pred HHHHHhh
Q 012879 404 RKILEME 410 (454)
Q Consensus 404 ~~~~~~~ 410 (454)
+++++..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 8888887
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.2e-18 Score=166.48 Aligned_cols=167 Identities=16% Similarity=0.123 Sum_probs=133.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-----CCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVE-----RKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
...+|++||++|++.|++++|.++|++|.+. .||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 5678999999999999999999999887643 69999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCh-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCcHhHHHHHHHHHHc
Q 012879 317 VLNACSHGGLV-EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITDVVVWRTLLGACSF 392 (454)
Q Consensus 317 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~ 392 (454)
+|.++|+.|+. ++|.++|++|.+. |+.||..+|++++....+.+-++.+.++...+... .|...+...|.+.|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 99999999985 7899999999999 99999999999998777654444443333333222 1224455566677776
Q ss_pred CCC---------hhHHHHHHHHHHHh
Q 012879 393 HGN---------VEMGERVTRKILEM 409 (454)
Q Consensus 393 ~g~---------~~~A~~~~~~~~~~ 409 (454)
.+. .++-.+.|++=++.
T Consensus 285 d~~~s~pk~~~~~~~L~~~~~~Ql~~ 310 (1134)
T 3spa_A 285 DGRVSYPKLHLPLKTLQCLFEKQLHM 310 (1134)
T ss_dssp CSCCCCCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCCcCccccCCHHHHHHHHHHHHHH
Confidence 552 35555666655543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.4e-16 Score=136.06 Aligned_cols=252 Identities=11% Similarity=-0.090 Sum_probs=170.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc-hHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF-DIRVLNCLI 250 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~ 250 (454)
..+......+...|++++|+..|++..+. .+.+...+..+..++...|++++|...++.+.+.+..+. ....+..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 34555666777777777777777777763 334455677777777777777777777777776431111 134477777
Q ss_pred HHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (454)
.++...|++++|++.|++.....| +..++..+...|...|++++|+..+++..+.. +.+...+..+...+...+++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888887777655 55677777788888888888888887777652 2345555555523333458888
Q ss_pred HHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHhcCCCC---CCc------HhHHHHHHHHHHcCCChh
Q 012879 330 GLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR---LEQAEKTALGIPSE---ITD------VVVWRTLLGACSFHGNVE 397 (454)
Q Consensus 330 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~---~p~------~~~~~~l~~~~~~~g~~~ 397 (454)
|.+.|+.+.+. .+.+...+..+..++...|+ +++|...++++... .|+ ..+|..+...|...|+++
T Consensus 161 A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 161 ADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 88888888764 22335666667777777776 66677766665544 233 257778888999999999
Q ss_pred HHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 398 MGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 398 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+|.+.++++++..|.++.++..+.......+
T Consensus 239 ~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 9999999999999998877777666554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=138.84 Aligned_cols=246 Identities=9% Similarity=-0.080 Sum_probs=194.3
Q ss_pred HhcCChHHHHHHHHHHHHccCC--CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh
Q 012879 182 TRMNRSNEALALFRKMVACEYT--EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI 259 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 259 (454)
...|++++|+..|+++.+.... +.+..++..+...+...|++++|...++++.+. .|.+..++..+..+|...|++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCH
Confidence 3457889999999998875111 124567888888999999999999999999887 455788999999999999999
Q ss_pred hHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 012879 260 FSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMV 338 (454)
Q Consensus 260 ~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 338 (454)
++|.+.|+++....| +..++..+...+...|++++|...++++.+.. |+.......+..+...|++++|...++...
T Consensus 94 ~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 94 DAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999988766 67789999999999999999999999998853 443344444455567799999999998887
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC
Q 012879 339 EECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 339 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
.. .+++...+ .++..+...++.++|.+.+++.....|+ ..++..+...|...|++++|...++++++..|.+
T Consensus 172 ~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 172 EK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN 248 (275)
T ss_dssp HH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred hc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence 75 23344443 4777788888999999999998887332 5788899999999999999999999999987765
Q ss_pred CCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 414 GGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
. .....++...|++++|.+.+
T Consensus 249 ~---~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 F---VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp C---HHHHHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHHHHhhHHHH
Confidence 4 34467788889999988776
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=137.81 Aligned_cols=224 Identities=11% Similarity=-0.032 Sum_probs=196.7
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC--------hhh
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN--------LVS 278 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~ 278 (454)
...+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|.+.|+++....|+ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 4567888899999999999999999999986 37889999999999999999999999998876442 578
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH
Q 012879 279 WTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG 358 (454)
Q Consensus 279 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 358 (454)
+..+...+...|++++|...+++..+. .|+. ..+...|++++|...++.+... .+.+...+..+...+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHH
Confidence 889999999999999999999999885 3443 3455668899999999999873 2335677888999999
Q ss_pred hcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHH
Q 012879 359 RAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLR 437 (454)
Q Consensus 359 ~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (454)
..|++++|.+.++++... +.+..++..+...+...|++++|+..++++++..|.++..+..++.++.+.|++++|.+.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999998776 3467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcc
Q 012879 438 RVMDERN 444 (454)
Q Consensus 438 ~~~~~~~ 444 (454)
++..+.+
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9988765
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-17 Score=135.22 Aligned_cols=210 Identities=13% Similarity=0.005 Sum_probs=110.7
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHH
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSI 282 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 282 (454)
|++...+..+...+...|++++|...+++..+. .|.++..+..+..++.+.|++++|+..|++..+..| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 344455555555555555555555555555554 344555555555555555555555555555555444 33444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
...+...+. . .+. .....|++++|...+++..+. -+.+...+..+..+|...|+
T Consensus 80 g~~~~~~~~-------------~--~~~---------~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~ 133 (217)
T 2pl2_A 80 SEAYVALYR-------------Q--AED---------RERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGE 133 (217)
T ss_dssp HHHHHHHHH-------------T--CSS---------HHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhh-------------h--hhh---------hcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCC
Confidence 444444300 0 000 000116666666666666653 12235556666666666777
Q ss_pred hHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 363 LEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
+++|+..|++......+...+..+..+|...|++++|+..++++++..|.++..+..++.++.+.|++++|.+.+++..
T Consensus 134 ~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 134 RDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777666665543323556666777777777777777777777777777777777777777777777777777776653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=127.29 Aligned_cols=198 Identities=14% Similarity=0.045 Sum_probs=143.7
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHH
Q 012879 169 RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNC 248 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 248 (454)
++...+..+...+...|++++|+..|++..+ ..+.+...+..+...+...|++++|...+++..+. .|.+...+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 78 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALK--ENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMV 78 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHH
Confidence 3556777788888888888888888888887 34556778888888888888888888888888887 4667888888
Q ss_pred HHHHHHhc-----------CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 012879 249 LIDTYAKC-----------GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLS 316 (454)
Q Consensus 249 l~~~~~~~-----------g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 316 (454)
+..++... |++++|+..|++..+..| +...+..+...+...|++++|+..|++..+.. .+...+..
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 88888888 888888888888877766 56677777788888888888888888887765 56777777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
+..++...|++++|...|+.+.+. .+.+...+..+..++...|++++|.+.+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 778888888888888888888764 23345667777777777888888877776653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-15 Score=137.05 Aligned_cols=249 Identities=10% Similarity=0.004 Sum_probs=193.2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc-hhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD-VKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
...|..+...+...|++++|+..|+++++. .+-+...|..+..++...|+ +++|...++++.+. .|.+..+|..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~~a~~~~ 172 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence 346777777888888888888888888873 34556778888888888886 88888888888886 56688888888
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc-CCCh
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH-GGLV 327 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~ 327 (454)
..++...|++++|+..|+++....| +...|..+..++...|++++|+..++++++.... +...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcc
Confidence 8888888899999998888888766 6778888888888888889999998888876432 56777777777777 5554
Q ss_pred HHH-----HHHHHHHHHhcCCCCChhHHHHHHHHHHhcC--ChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCC-----
Q 012879 328 EEG-----LNFFDKMVEECEVLPDIKHYGCLIDMLGRAG--RLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHG----- 394 (454)
Q Consensus 328 ~~a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g----- 394 (454)
++| +..+++..+. -+-+...|..+..++...| ++++|.+.+.++ .. ..+...+..++..|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 666 4778877764 2234667778888888877 688888888887 44 445677888888888764
Q ss_pred ---C-hhHHHHHHHHH-HHhhcCCCCcHHHHHHHHHhc
Q 012879 395 ---N-VEMGERVTRKI-LEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 395 ---~-~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 427 (454)
+ .++|+++++++ .+.+|.....|..++..+...
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 2 58899999999 888888888888877777543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.70 E-value=5.7e-15 Score=126.76 Aligned_cols=204 Identities=8% Similarity=-0.063 Sum_probs=133.5
Q ss_pred hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHH
Q 012879 208 ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGF 286 (454)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~ 286 (454)
..+..+...+...|++++|...++++.+. .|.+...+..+..+|...|++++|.+.|+++....| +...+..+...+
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 34445555555555555555555555554 233556666666677777777777777776666544 555666666777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
...|++++|.+.++++.+.+..| +...+..+...+...|++++|...++.+.+. . +.+...+..+...|...|++++
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777766632233 4455666667777777777777777777664 2 2345666777777777777777
Q ss_pred HHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 366 AEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 366 A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
|...++++... +.+...+..+...+...|++++|.+.++++.+..|.++.
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 77777776655 335566677777777778888888888888777766543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-16 Score=143.21 Aligned_cols=378 Identities=10% Similarity=-0.005 Sum_probs=246.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCc---chHhHHHHHHHHcCCCCCchhH
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHP---NLGTQLHAVISKVGFQSHVYVN 112 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~ 112 (454)
.+...+.+.|++++|++.|+... ..+. ..++..+...+...|++ ++|...|+...+. ++..+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa---~~g~--------~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~ 72 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLA---ELGY--------SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQ 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHTC--------CTGGGTCC--------------------------------CH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH---HCCC--------HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHH
Confidence 36677788999999999999987 4442 23445566666667777 8999999988754 55666
Q ss_pred HHHHHHHHhCC-----ChhHHHHHHhhCCCC-CchhHHHHHHHHHhcCCHHHHH---HHHhhCCC-CCcchHHHHHHHHH
Q 012879 113 TALVNMYVSLG-----FLKDSSKLFDEMPER-NLVTWNVMITGLVKWGELEFAR---SLFEEMPC-RNVVSWTGIIDGYT 182 (454)
Q Consensus 113 ~~l~~~~~~~g-----~~~~a~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~A~---~~~~~~~~-~~~~~~~~l~~~~~ 182 (454)
..+...+...+ ++++|...|++..++ +...+..+...|...+..+.+. +.+....+ .++.....+...|.
T Consensus 73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~ 152 (452)
T 3e4b_A 73 ARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYR 152 (452)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777555555 788999999887753 4557777888887766544333 33333222 45677788888888
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC---chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc---
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG---DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC--- 256 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 256 (454)
..+.++++........+. -...++..+..+...+...| +.++|...|++..+.| +++...+..|...|...
T Consensus 153 ~~~~~~~~~~~a~~~~~~-a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g--~~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 153 TQGTYDQHLDDVERICKA-ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG--TVTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHTCGGGGHHHHHHHHHH-HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHTCGGGS
T ss_pred cCCCcccCHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHhCCCCC
Confidence 888666665554444332 22334448888888888899 8999999999999886 33666667777777665
Q ss_pred -CChhHHHHHHHHhhhcCCChhhHHHHHHH-H--HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC-----Ch
Q 012879 257 -GCIFSASKLFEDISVERKNLVSWTSIISG-F--AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG-----LV 327 (454)
Q Consensus 257 -g~~~~a~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-----~~ 327 (454)
+++++|.+.|++.. ..++..+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++
T Consensus 230 ~~d~~~A~~~~~~aa--~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA--PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp SCCHHHHHHHHHHHG--GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCH
T ss_pred CCCHHHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCH
Confidence 78999999999988 3567777777776 4 45789999999999998876 4556666666665 45 89
Q ss_pred HHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHH
Q 012879 328 EEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRTLLGACSF----HGNVEMG 399 (454)
Q Consensus 328 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 399 (454)
++|..+|+... . -+...+..|...|.. ..++++|.++|++..+. .+......|...|.. ..|.++|
T Consensus 304 ~~A~~~~~~Aa-~----g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y~~G~g~~~d~~~A 377 (452)
T 3e4b_A 304 KAAEAHFEKAV-G----REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-GQNSADFAIAQLFSQGKGTKPDPLNA 377 (452)
T ss_dssp HHHHHHHHTTT-T----TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-TCTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred HHHHHHHHHHh-C----CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-ChHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 99999998876 2 356677777777766 34899999999987765 345566677777764 4589999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
...++++.+.+..........+......++..+|.++.++..+.
T Consensus 378 ~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 378 YVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99999998876543222222222222335666777777776554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.69 E-value=7.1e-15 Score=127.67 Aligned_cols=233 Identities=9% Similarity=-0.026 Sum_probs=165.7
Q ss_pred hhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCc-
Q 012879 31 SQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHV- 109 (454)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 109 (454)
+..+......+.+.|++++|+..|+.+. ...+. +...+..+..++...|++++|...++.+.+.+..++.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l---~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 73 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLE---AKKYN------SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAK 73 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHH---HTTCC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHH---HhCCC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHH
Confidence 3456667788889999999999999998 55554 6668888899999999999999999999884322222
Q ss_pred -hhHHHHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHH
Q 012879 110 -YVNTALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMPC---RNVVSWTGIIDGYT 182 (454)
Q Consensus 110 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~ 182 (454)
..|..+..++...|++++|...|++..+ .+..++..+...+...|++++|.+.|++..+ .+...+..+...+.
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 153 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Confidence 2378888899999999999999988764 3456788888888888888888888888765 23455666662444
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc---hhHHHHHHHhhhhcCCCCch------HHHHHHHHHHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD---VKSCQLIHGYGEKRGFTAFD------IRVLNCLIDTY 253 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~ 253 (454)
..+++++|...|+++.+. .+.+...+..+...+...|+ .+.|...++++.+.....++ ..++..+...|
T Consensus 154 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 231 (272)
T 3u4t_A 154 YNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYY 231 (272)
T ss_dssp HTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 445888888888888773 33445666666677766666 66677776666654211112 24566667777
Q ss_pred HhcCChhHHHHHHHHhhhcCC
Q 012879 254 AKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~ 274 (454)
...|++++|.+.|+++.+..|
T Consensus 232 ~~~~~~~~A~~~~~~al~~~p 252 (272)
T 3u4t_A 232 TINRDKVKADAAWKNILALDP 252 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT
T ss_pred HHcCCHHHHHHHHHHHHhcCc
Confidence 777777777777777766655
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.9e-14 Score=123.97 Aligned_cols=226 Identities=11% Similarity=-0.050 Sum_probs=158.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCchHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRV 245 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 245 (454)
++.++..+...+...|++++|+..|++..+. .+...+..+...+.. .+++++|...+++..+.+ ++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a 76 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG 76 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHH
Confidence 4456667777777888888888888877762 345666677777777 778888888887777764 5666
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 246 LNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWTSIISGFAM----HGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 246 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
+..+...|.. .+++++|+..|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 7777777777 77788888777777664 366667777777777 777777777777777754 34455556
Q ss_pred HHHHhc----CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 012879 318 LNACSH----GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRTLLGA 389 (454)
Q Consensus 318 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 389 (454)
...+.. .+++++|...|+...+. + +...+..+...|.. .+++++|.+.+++..+.. +...+..+...
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~ 227 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAM 227 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 666665 67777777777777664 2 34566666777777 777777777777665552 25566666677
Q ss_pred HHc----CCChhHHHHHHHHHHHhhcC
Q 012879 390 CSF----HGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 390 ~~~----~g~~~~A~~~~~~~~~~~~~ 412 (454)
|.. .+++++|++.++++.+.+|.
T Consensus 228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 228 QYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 766 77777777777777776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=6.9e-16 Score=131.65 Aligned_cols=213 Identities=11% Similarity=0.007 Sum_probs=130.3
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISG 285 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 285 (454)
...+..+...+...|+++.|...++++.+. .|.+...+..+..++...|++++|.+.|+++....| +...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 344555555555666666666666665553 344566666666677777777777777776666544 45566666677
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 286 FAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777766643 234556666667777777777777777777654 22345666777777777777777
Q ss_pred HHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 366 AEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 366 A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
|.+.++++... +.+..++..+...|...|++++|.+.++++++..|.+...+..+....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 77777766554 234667777888888888888888888888888877766665554433
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-17 Score=161.54 Aligned_cols=152 Identities=9% Similarity=-0.004 Sum_probs=126.6
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
--..+||++|++|++.|++++|.++|+.|.++...|.. | |..|||+||++|++.|++++|.++|++|.+.|+.||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~--P---dvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PD 199 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKL--L---TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD 199 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTT--C---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCC--C---CHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCc
Confidence 34468999999999999999999999998754456888 9 999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHhCCCh-hHHHHHHhhCC----CCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCcchHHHHH
Q 012879 109 VYVNTALVNMYVSLGFL-KDSSKLFDEMP----ERNLVTWNVMITGLVKWGELEFARSLFEEMPC-----RNVVSWTGII 178 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~ 178 (454)
..|||++|.++++.|+. ++|.++|++|. .||..+|+.++.+..+.+-++.+.++...+.. +.+.+...|.
T Consensus 200 vvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 200 LLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHH
Confidence 99999999999999985 78999999997 49999999999888776555555555444432 1234555566
Q ss_pred HHHHhcC
Q 012879 179 DGYTRMN 185 (454)
Q Consensus 179 ~~~~~~~ 185 (454)
..|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 6676655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-15 Score=140.55 Aligned_cols=265 Identities=12% Similarity=0.008 Sum_probs=152.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCCh----hhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPSE----ITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLN 247 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~ 247 (454)
.+...+...|++++|+..|+++.+. . +.+. ..+..+...+...|+++.|...++++.+. +..+....++.
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQA-G-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHh-c-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 3444555556666666666655553 1 1121 24555555555666666666555554432 11222445566
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhc------CC-ChhhHHHHHHHHHhcCC-----------------hhHHHHHHHHHH
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVE------RK-NLVSWTSIISGFAMHGM-----------------GKEAVENFGRMQ 303 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~ 303 (454)
.+...|...|++++|...|++.... .+ ...++..+...|...|+ +++|++.+++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 6666666666666666666665543 11 22355556666666666 666666666544
Q ss_pred hC----CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 304 KV----GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 304 ~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
+. +..+ ...++..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|.+.+++..
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 31 1111 1235555666666777777777777766553111111 2255666677777777777777776655
Q ss_pred CCCC-------cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC------CcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 375 SEIT-------DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG------GDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 375 ~~~p-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
...+ ...++..+...+...|++++|.+.++++++..+... ..+..++.++.+.|++++|.+.+++..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4311 135566677777777777777777777776654422 256667777777777777777777665
Q ss_pred h
Q 012879 442 E 442 (454)
Q Consensus 442 ~ 442 (454)
+
T Consensus 371 ~ 371 (411)
T 4a1s_A 371 Q 371 (411)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.1e-15 Score=124.51 Aligned_cols=204 Identities=9% Similarity=-0.093 Sum_probs=109.3
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISG 285 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 285 (454)
...+..+...+...|+++.|...++.+.+. .|.+...+..+..+|...|++++|.+.|+++....| +..++..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 444555555566666666666666665554 233455555566666666666666666665555433 44455555555
Q ss_pred HHhc-CChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 286 FAMH-GMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 286 ~~~~-g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
+... |++++|...++++.+.+..| +...+..+..++...|++++|...++.+.+. .+.+...+..+..++.+.|++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCH
T ss_pred HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCH
Confidence 5566 66666666666555522222 2344555555555556666666666555543 122344555555555555555
Q ss_pred HHHHHHHhcCCCC-C-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 364 EQAEKTALGIPSE-I-TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 364 ~~A~~~~~~~~~~-~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
++|.+.++++... + .+...+..+...+...|+.+.|..+++.+.+..|.++
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 5555555554443 2 2344444445555555555555555555555555443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1e-14 Score=122.66 Aligned_cols=203 Identities=13% Similarity=0.051 Sum_probs=140.2
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 318 (454)
|.++..+..+...+...|++++|.+.|+++....| +...+..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 44566677777777777777777777777766644 45667777777777777777777777776643 23556666677
Q ss_pred HHHhcC-CChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 319 NACSHG-GLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 319 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
..+... |++++|...++.+.+. +..|+ ...+..+..++...|++++|.+.++++....| +...+..+...+...|+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence 777777 7777777777777662 23333 45666677777777777777777776655533 45667777777777777
Q ss_pred hhHHHHHHHHHHHhhc-CCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 396 VEMGERVTRKILEMER-GYGGDYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+++|.+.++++++..| .+...+..++..+...|+.++|..+++.+.+..
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 7777777777777777 666666666777777777777777777766543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-14 Score=120.98 Aligned_cols=226 Identities=9% Similarity=-0.038 Sum_probs=184.8
Q ss_pred CChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHH
Q 012879 205 PSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWT 280 (454)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 280 (454)
-+..++..+...+...|++++|...+++..+.+ +...+..+...|.. .+++++|...|++..+.. +...+.
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~ 78 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-YSNGCH 78 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-CHHHHH
Confidence 355677788888888899999999999888832 56778888888888 899999999999887753 777888
Q ss_pred HHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCCCCChhHHHH
Q 012879 281 SIISGFAM----HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH----GGLVEEGLNFFDKMVEECEVLPDIKHYGC 352 (454)
Q Consensus 281 ~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (454)
.+...|.. .+++++|+..|++..+.+ +...+..+...+.. .+++++|...|++..+. + +...+..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~ 151 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHH
Confidence 88888888 899999999999988875 56777778888887 88999999999998875 3 5567777
Q ss_pred HHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 353 LIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 353 l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
+...|.. .+++++|.+.|++..+. .+...+..+...|.. .+++++|++.++++.+.++ +..+..++.+|
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~ 228 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence 8888887 88999999998887665 456777788888888 8999999999999888755 56777888888
Q ss_pred Hh----cCCcCcHHHHHHHHhhccc
Q 012879 425 AG----VGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 425 ~~----~g~~~~a~~~~~~~~~~~~ 445 (454)
.+ .|++++|.+.+++..+.+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCC
Confidence 88 8999999999988877654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.2e-15 Score=137.11 Aligned_cols=342 Identities=12% Similarity=-0.023 Sum_probs=235.7
Q ss_pred HHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCCh---hHHHHHHhhCCCCCchhHHHHHHHHHhcC-
Q 012879 79 FLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFL---KDSSKLFDEMPERNLVTWNVMITGLVKWG- 154 (454)
Q Consensus 79 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~ll~~~~~~~- 154 (454)
.+...+.+.|++++|.++|+...+.| ++..+..|...|...|+. ++|...|++..+.++..+..+...+...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 35667788999999999999998877 344555667777778888 99999999988777777877877565555
Q ss_pred ----CHHHHHHHHhhCCC-CCcchHHHHHHHHHhcCChHH---HHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 155 ----ELEFARSLFEEMPC-RNVVSWTGIIDGYTRMNRSNE---ALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 155 ----~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
++++|...|++..+ .+...+..|...|...+..++ +.+.+...... .+......+...+...+.++.+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcccC
Confidence 78999999988765 345688888888887765444 45555555443 2355667777777777755444
Q ss_pred ----HHHHHhhhhcCCCCchHHHHHHHHHHHHhcC---ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc----CChhH
Q 012879 227 ----QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG---CIFSASKLFEDISVERK-NLVSWTSIISGFAMH----GMGKE 294 (454)
Q Consensus 227 ----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~----g~~~~ 294 (454)
..+++..... ++..+..|...|...| +.++|++.|++..+..+ +...+..+...|... +++++
T Consensus 161 ~~~a~~~~~~a~~~-----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 161 LDDVERICKAALNT-----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp HHHHHHHHHHHTTT-----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444444332 3348888999999999 99999999999988754 445556677777554 69999
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHH-H--hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-----ChHHH
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNA-C--SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG-----RLEQA 366 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 366 (454)
|...|++.. .| +...+..+... + ...+++++|..+|++..+. | +...+..|...|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999988 44 33444455544 3 4689999999999999876 4 5667777887777 55 99999
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh----cCCcCcHHHHHH
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAG----VGRFGDAERLRR 438 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~ 438 (454)
.++|++.. ..++..+..|...|.. ..++++|...|+++.+. .++.....++.+|.. ..+.++|...++
T Consensus 307 ~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 382 (452)
T 3e4b_A 307 EAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQ 382 (452)
T ss_dssp HHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHH
T ss_pred HHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 99999998 3577888888888776 44999999999999874 467788889998875 357888999998
Q ss_pred HHhhccc
Q 012879 439 VMDERNA 445 (454)
Q Consensus 439 ~~~~~~~ 445 (454)
+..+.|.
T Consensus 383 ~A~~~g~ 389 (452)
T 3e4b_A 383 LAKAQDT 389 (452)
T ss_dssp HHHTTCC
T ss_pred HHHHCCC
Confidence 8877664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=133.01 Aligned_cols=241 Identities=8% Similarity=-0.174 Sum_probs=171.1
Q ss_pred hcCCHHHHHHHHhhCCCC-------CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 152 KWGELEFARSLFEEMPCR-------NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
..|++++|+..|+++.+. +..++..+...+...|++++|...|+++.+. .+.+..++..+...+...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHccCHH
Confidence 346677777777766541 3456777788888888888888888888773 3456778888888888888888
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
+|...++++.+. .|.+..++..+..+|...|++++|...|+++....|+.......+..+...|++++|...+++...
T Consensus 95 ~A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 95 AAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888886 454677888888888888888888888888887767555555555555667888888888877766
Q ss_pred CCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc
Q 012879 305 VGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD 379 (454)
Q Consensus 305 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 379 (454)
.. +++...+ .++..+...++.++|...++..... .|+ ...+..+..+|.+.|++++|...|+++....|+
T Consensus 173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 247 (275)
T 1xnf_A 173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVH 247 (275)
T ss_dssp HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCT
T ss_pred cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCch
Confidence 42 2333333 3566667777778888888776542 221 467778888888888999998888888776443
Q ss_pred HhHHHHHHHHHHcCCChhHHHHHH
Q 012879 380 VVVWRTLLGACSFHGNVEMGERVT 403 (454)
Q Consensus 380 ~~~~~~l~~~~~~~g~~~~A~~~~ 403 (454)
. +.....++...|++++|++.+
T Consensus 248 ~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 248 N--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CHHHHHHHHHHHHHHHC----
T ss_pred h--HHHHHHHHHHHHHHHhhHHHH
Confidence 2 233355666777888777765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.4e-15 Score=136.94 Aligned_cols=299 Identities=15% Similarity=0.079 Sum_probs=199.2
Q ss_pred chhHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-----cchHHHHHHHHHhcCChHHHHHHHHHHHHcc---CCCC-Chh
Q 012879 140 LVTWNVMITGLVKWGELEFARSLFEEMPC--RN-----VVSWTGIIDGYTRMNRSNEALALFRKMVACE---YTEP-SEI 208 (454)
Q Consensus 140 ~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~ 208 (454)
...+......+...|++++|...|++..+ |+ ..++..+...+...|++++|...+++..... +..| ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 34455666777888888888888877653 32 2467777788888888888888888765421 1111 244
Q ss_pred hHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCC--------------------hhHHHH
Q 012879 209 TILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGC--------------------IFSASK 264 (454)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~ 264 (454)
++..+...+...|+++.|...+++..+. +..+....++..+...|...|+ +++|.+
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 6677777888888888888888877654 1111124467777888888888 888888
Q ss_pred HHHHhhhc---CC----ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHHHH
Q 012879 265 LFEDISVE---RK----NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEGLN 332 (454)
Q Consensus 265 ~~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~ 332 (454)
.+++.... .+ ...++..+...+...|++++|...+++..+. +..+ ...++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 87776543 11 2345677777888888888888888877642 1111 12366677777888888888888
Q ss_pred HHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCc----HhHHHHHHHHHHcCCChhHHHH
Q 012879 333 FFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITD----VVVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 333 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~ 401 (454)
.+++..+...-.++ ..++..+...|...|++++|.+.+++.... .++ ..++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 88877654111111 456667777888888888888888776544 111 4566777778888888888888
Q ss_pred HHHHHHHhhcCCCC------cHHHHHHHHHhcCCcCcHHHHHH
Q 012879 402 VTRKILEMERGYGG------DYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 402 ~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
.++++++..+.... ++..++.++...|+......-+.
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 371 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIM 371 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHH
Confidence 88888887776743 45567777777777766554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.66 E-value=5.7e-15 Score=132.30 Aligned_cols=269 Identities=12% Similarity=0.008 Sum_probs=197.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRV 245 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~ 245 (454)
+......+...|++++|+..|+++.+. . +.+ ...+..+...+...|+++.|...+++..+. +..+....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQV-G-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhh-C-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 344556777788888888888888774 1 222 356677777888888888888887776543 222334567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhcCC--------------------hhHHHHH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMHGM--------------------GKEAVEN 298 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~ 298 (454)
+..+...|...|++++|...+++.... .++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788888888999999999988887654 122 2367777888888888 8888888
Q ss_pred HHHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHH
Q 012879 299 FGRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKT 369 (454)
Q Consensus 299 ~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~ 369 (454)
+++..+. +..| ...++..+...+...|++++|...++...+...-.++ ..++..+...+...|++++|.+.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8776542 1111 2346777778888899999999999888754111111 33677888889999999999999
Q ss_pred HhcCCCC---CCc----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC------CcHHHHHHHHHhcCCcCcHHHH
Q 012879 370 ALGIPSE---ITD----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG------GDYVLMYNILAGVGRFGDAERL 436 (454)
Q Consensus 370 ~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~ 436 (454)
+++.... .++ ..++..+...+...|++++|...++++++..+... ..+..++.++.+.|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8877654 111 45778888999999999999999999988766532 3677899999999999999999
Q ss_pred HHHHhhcc
Q 012879 437 RRVMDERN 444 (454)
Q Consensus 437 ~~~~~~~~ 444 (454)
+++..+..
T Consensus 326 ~~~a~~~~ 333 (338)
T 3ro2_A 326 AEKHLEIS 333 (338)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHH
Confidence 99887643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-13 Score=129.17 Aligned_cols=422 Identities=9% Similarity=-0.004 Sum_probs=285.2
Q ss_pred CchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCC-
Q 012879 11 NNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSH- 89 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~- 89 (454)
+......++.-....+ -|..+|..++..+.+.++++.+..+|+.+. ..-+. +...|...+..-.+.++
T Consensus 48 ~~d~i~~lE~~l~~np--~d~~~W~~yi~~~~~~~~~~~aR~vyEraL---~~fP~------~~~lW~~Yi~~E~~~~~~ 116 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQP--TDIFLYVKLLKHHVSLKQWKQVYETFDKLH---DRFPL------MANIWCMRLSLEFDKMEE 116 (679)
T ss_dssp CSCHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHTC--C
T ss_pred CHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHH---HHCCC------CHHHHHHHHHHHHhhCCc
Confidence 3333434444455555 799999999999999999999999999998 55444 67788888888888888
Q ss_pred --cchHhHHHHHHHHcC-CCCCchhHHHHHHHHHhCCCh--------hHHHHHHhhCC------CC-CchhHHHHHHHHH
Q 012879 90 --PNLGTQLHAVISKVG-FQSHVYVNTALVNMYVSLGFL--------KDSSKLFDEMP------ER-NLVTWNVMITGLV 151 (454)
Q Consensus 90 --~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~------~~-~~~~~~~ll~~~~ 151 (454)
++.+..+|+..+... .+|++..|...+....+.++. +...++|+... .+ +...|...+....
T Consensus 117 ~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~ 196 (679)
T 4e6h_A 117 LDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLE 196 (679)
T ss_dssp CCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 999999999998864 248888998888877666554 33446776533 23 3457877776543
Q ss_pred ---------hcCCHHHHHHHHhhCCC-CCc---chHH---HHHHHHH----------hcCChHHHHHHHHHHHHcc-CC-
Q 012879 152 ---------KWGELEFARSLFEEMPC-RNV---VSWT---GIIDGYT----------RMNRSNEALALFRKMVACE-YT- 203 (454)
Q Consensus 152 ---------~~~~~~~A~~~~~~~~~-~~~---~~~~---~l~~~~~----------~~~~~~~a~~~~~~~~~~~-~~- 203 (454)
..++++.+..+|++... |.. .+|. .+..... ...+++.|...+.++.... ++
T Consensus 197 ~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~ 276 (679)
T 4e6h_A 197 HWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLK 276 (679)
T ss_dssp TCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred hccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHh
Confidence 24467889999988775 321 2222 2211110 0112334444554432210 11
Q ss_pred ---C-----------C--C------hhhHHhHHHHHHccC-------chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 204 ---E-----------P--S------EITILAVLPAIWQNG-------DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 204 ---~-----------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
+ | + ...|...+..--..+ ..+.+..+|++.... .|..+.+|...+..+.
T Consensus 277 r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~ 354 (679)
T 4e6h_A 277 RNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH--VCFAPEIWFNMANYQG 354 (679)
T ss_dssp CCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHH
T ss_pred hccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 1 1 0 022333333322222 123456678888876 5668888888888888
Q ss_pred hcCChhHHH-HHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---------CCc------------H
Q 012879 255 KCGCIFSAS-KLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGL---------KPN------------R 311 (454)
Q Consensus 255 ~~g~~~~a~-~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---------~p~------------~ 311 (454)
..|+.++|. ++|++.....| +...|-..+...-+.|+++.|.++|+++.+... .|+ .
T Consensus 355 ~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~ 434 (679)
T 4e6h_A 355 EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLT 434 (679)
T ss_dssp HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchH
Confidence 899999996 99999887766 555677778888889999999999998876310 131 2
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc-CChHHHHHHHhcCCCCCC-cHhHHHHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA-GRLEQAEKTALGIPSEIT-DVVVWRTLLGA 389 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 389 (454)
..|...+....+.|+.+.|.++|..+.+. .-.+....|...+..-.+. ++++.|.++|+...+..| +...|...++.
T Consensus 435 ~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~f 513 (679)
T 4e6h_A 435 YVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDF 513 (679)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 35777777777788999999999999874 1112233444333333444 458999999998887733 55666777887
Q ss_pred HHcCCChhHHHHHHHHHHHhhcC---CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 390 CSFHGNVEMGERVTRKILEMERG---YGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
....|+.+.|..+|+++++..++ ....|..++..-.+.|+.+.+..+.+++.+....
T Consensus 514 e~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 514 LIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 77889999999999999987773 4456778888888899999999999999876654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=4.5e-15 Score=134.30 Aligned_cols=233 Identities=10% Similarity=0.051 Sum_probs=200.2
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC-hhHHHHHHHHhhhcCC-ChhhHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC-IFSASKLFEDISVERK-NLVSWTSIIS 284 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~-~~~~~~~l~~ 284 (454)
...|..+...+...|+++.|...++++.+. .|.+..+|+.+..++...|+ +++|+..|+++....| +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 456777888889999999999999999997 57789999999999999997 9999999999999877 7789999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh-cCCh
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR-AGRL 363 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~ 363 (454)
++...|++++|+..|+++++... -+...|..+..++...|++++|+..++++.+. . +.+...|+.+..++.+ .|..
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-D-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999998643 36788899999999999999999999999985 2 3357889999999999 6665
Q ss_pred HHH-----HHHHhcCCCCCC-cHhHHHHHHHHHHcCC--ChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC-------
Q 012879 364 EQA-----EKTALGIPSEIT-DVVVWRTLLGACSFHG--NVEMGERVTRKILEMERGYGGDYVLMYNILAGVG------- 428 (454)
Q Consensus 364 ~~A-----~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 428 (454)
++| ++.+++.....| +...|..+...+...| ++++|++.++++ +..|.++..+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred hHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 787 477887776644 5778999999999888 689999999998 778888888899999999875
Q ss_pred --CcCcHHHHHHHH-hhccc
Q 012879 429 --RFGDAERLRRVM-DERNA 445 (454)
Q Consensus 429 --~~~~a~~~~~~~-~~~~~ 445 (454)
..++|.++++++ .+.+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHHhCc
Confidence 258899999998 66544
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.3e-15 Score=128.32 Aligned_cols=202 Identities=9% Similarity=-0.007 Sum_probs=162.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
.+..+..+...+...|++++|...|+++....| +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 556778888999999999999999999988766 67888899999999999999999999998864 3367788889999
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A 399 (454)
+...|++++|.+.++.+.+. .+.+...+..+...+...|++++|.+.++++... +.+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999885 2446778889999999999999999999988766 34678889999999999999999
Q ss_pred HHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 400 ERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
+..++++++..|.+...+..++.++.+.|++++|.+.++++.+.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 99999999999998889999999999999999999999999876543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.3e-14 Score=121.98 Aligned_cols=198 Identities=11% Similarity=-0.018 Sum_probs=108.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|.+.++++.+. .|.+...+..+..
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALAS--DSRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHH
Confidence 34445555555556666666666555542 2334455555555555566666666666555554 2334555555556
Q ss_pred HHHhcCChhHHHHHHHHhhh--cCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChH
Q 012879 252 TYAKCGCIFSASKLFEDISV--ERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVE 328 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~--~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 328 (454)
+|...|++++|.+.|+++.. ..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 66666666666666665555 323 33445555555566666666666666555532 123445555555566666666
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
+|...++.+.+. .+.+...+..+...+...|++++|.+.++++...
T Consensus 193 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 193 PARQYYDLFAQG--GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHTT--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666665542 2233445555555566666666666666555444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-15 Score=134.70 Aligned_cols=292 Identities=10% Similarity=-0.003 Sum_probs=219.2
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHhhCCC--CC-----chhHHHHHHHHHhcCCHHHHHHHHhhCCC-----C----C
Q 012879 107 SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE--RN-----LVTWNVMITGLVKWGELEFARSLFEEMPC-----R----N 170 (454)
Q Consensus 107 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-----~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-----~----~ 170 (454)
.....+......+...|++++|...|++..+ |+ ..++..+...+...|++++|...+++... . .
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3445667788889999999999999998764 43 24677888899999999999999887542 1 2
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHHHccCc--------------------hhHH
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAIWQNGD--------------------VKSC 226 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~--------------------~~~a 226 (454)
..++..+...+...|++++|...+++..+.....++ ..++..+...+...|+ ++.|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 356788888999999999999999988764111122 4478888889999999 9999
Q ss_pred HHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhcCChhHH
Q 012879 227 QLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 227 ~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A 295 (454)
...+++..+. +..+....++..+...|...|++++|...|++.... .++ ..++..+...+...|++++|
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 246 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 246 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 9998887653 222324567888999999999999999999988765 122 23778888999999999999
Q ss_pred HHHHHHHHhC----CCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHH
Q 012879 296 VENFGRMQKV----GLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 296 ~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 366 (454)
...+++..+. +..+. ..++..+...+...|++++|...++...+...-.++ ..++..+...|...|++++|
T Consensus 247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 326 (406)
T 3sf4_A 247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA 326 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999987753 21111 456778888999999999999999998764211122 55777888999999999999
Q ss_pred HHHHhcCCCC---C----CcHhHHHHHHHHHHcCCChhH
Q 012879 367 EKTALGIPSE---I----TDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 367 ~~~~~~~~~~---~----p~~~~~~~l~~~~~~~g~~~~ 398 (454)
.+.+++.... . ....++..+...+...|+...
T Consensus 327 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 327 MHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 9998876554 1 123456666666666666543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.7e-15 Score=138.67 Aligned_cols=212 Identities=8% Similarity=-0.074 Sum_probs=169.8
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh-hHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI-FSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFG 300 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 300 (454)
++.+...++..... .|.+...+..+..+|...|++ ++|++.|++..+..| +...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34455555554443 444777888888888888888 888888888877766 56778888888888888888888888
Q ss_pred HHHhCCCCCcHHHHHHHHHHHhcC---------CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc--------CCh
Q 012879 301 RMQKVGLKPNRVTFLSVLNACSHG---------GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA--------GRL 363 (454)
Q Consensus 301 ~m~~~~~~p~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~ 363 (454)
+..+. .|+...+..+...+... |++++|...+++..+. .+.+...|..+..+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88875 45667777888888888 8889999999988875 233577788888888888 889
Q ss_pred HHHHHHHhcCCCCCC----cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 364 EQAEKTALGIPSEIT----DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
++|++.|++.....| +...|..+..+|...|++++|++.|+++++..|.+...+..++.++...|++++|.+.+.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999988877544 6788999999999999999999999999999999888899999999999999988876544
Q ss_pred H
Q 012879 440 M 440 (454)
Q Consensus 440 ~ 440 (454)
+
T Consensus 318 ~ 318 (474)
T 4abn_A 318 T 318 (474)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-14 Score=134.56 Aligned_cols=279 Identities=13% Similarity=0.026 Sum_probs=172.0
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCCh----hhHHHHHHHHhccCCcchHhHHHHHHHHcC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDS----FTYSFLIRTCATLSHPNLGTQLHAVISKVG 104 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 104 (454)
.....+..+...+...|++++|+..|+++. ...+. +. ..+..+...+...|++++|...+++..+..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAI---QAGTE------DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHH---Hhccc------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 445566677888999999999999999998 44433 33 578888899999999999999999887641
Q ss_pred -----CCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--CCcchHHHH
Q 012879 105 -----FQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC--RNVVSWTGI 177 (454)
Q Consensus 105 -----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l 177 (454)
.+....++..+..+|...|++++|...+++..+ ++..... ....++..+
T Consensus 117 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------------------------~~~~~~~~~~~~~~~~~l 172 (411)
T 4a1s_A 117 KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLT------------------------LARQLGDRLSEGRALYNL 172 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------------------------HHHHHTCHHHHHHHHHHH
T ss_pred HHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------HHHHhhchHHHHHHHHHH
Confidence 123345777888888888998888888876532 1111110 011233444
Q ss_pred HHHHHhcCC-----------------hHHHHHHHHHHHHcc---CC-CCChhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 178 IDGYTRMNR-----------------SNEALALFRKMVACE---YT-EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 178 ~~~~~~~~~-----------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
...|...|+ +++|+..+++..+.. +. +....++..+...+...|++++|...+++..+.
T Consensus 173 ~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 252 (411)
T 4a1s_A 173 GNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI 252 (411)
T ss_dssp HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 444444444 455554444433210 00 111234555555566666666666666555443
Q ss_pred C----CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 237 G----FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-------NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 237 ~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
. ........+..+..+|...|++++|...|++.....+ ...++..+...+...|++++|...+++..+.
T Consensus 253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 253 AREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 0111123566677777777777777777776655421 1345666677777777777777777776542
Q ss_pred ----CCC-CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 306 ----GLK-PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 306 ----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+.. ....++..+...+...|++++|...+++..+.
T Consensus 333 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 333 AQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 111 11235666777777788888888888877764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-13 Score=116.91 Aligned_cols=223 Identities=7% Similarity=-0.031 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHH-------ccCch-------hHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIW-------QNGDV-------KSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
++|...|++.... .+.+...|..++..+. ..|++ ++|..++++..+. ..|.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHH
Confidence 6788899988873 4566777777777765 35775 8999999999883 1455778999999999
Q ss_pred HhcCChhHHHHHHHHhhhcCCC-hh-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH-hcCCChHHH
Q 012879 254 AKCGCIFSASKLFEDISVERKN-LV-SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNAC-SHGGLVEEG 330 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a 330 (454)
.+.|++++|.++|+++.+..|+ .. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|
T Consensus 110 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999988774 44 788899999999999999999999988642 3444444333332 236999999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CC--cHhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---IT--DVVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
..+|+...+. .+.+...|..++..+.+.|++++|..+|++.... .| ....|..++..+...|+.+.|..++++
T Consensus 189 ~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999875 2346778888999999999999999999998774 34 356788889888999999999999999
Q ss_pred HHHhhcCCCCc
Q 012879 406 ILEMERGYGGD 416 (454)
Q Consensus 406 ~~~~~~~~~~~ 416 (454)
+.+..|.+...
T Consensus 267 a~~~~p~~~~~ 277 (308)
T 2ond_A 267 RFTAFREEYEG 277 (308)
T ss_dssp HHHHTTTTTSS
T ss_pred HHHHccccccc
Confidence 99999985543
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.7e-14 Score=126.96 Aligned_cols=279 Identities=14% Similarity=0.058 Sum_probs=167.3
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCC----hhhHHHHHHHHhccCCcchHhHHHHHHHHc-
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFD----SFTYSFLIRTCATLSHPNLGTQLHAVISKV- 103 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 103 (454)
.+...+......+...|++++|+..|+++. ...+. + ...+..+...+...|++++|...+++..+.
T Consensus 3 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al---~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 3 ASCLELALEGERLCKSGDCRAGVSFFEAAV---QVGTE------DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCCS------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHH---hhCcc------cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 344566677788899999999999999998 44433 3 467888899999999999999999987653
Q ss_pred ---CCC-CCchhHHHHHHHHHhCCChhHHHHHHhhCCC-----CC----chhHHHHHHHHHhcCC-------------HH
Q 012879 104 ---GFQ-SHVYVNTALVNMYVSLGFLKDSSKLFDEMPE-----RN----LVTWNVMITGLVKWGE-------------LE 157 (454)
Q Consensus 104 ---~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~ll~~~~~~~~-------------~~ 157 (454)
+.. ....++..+...+...|++++|...+++..+ ++ ..++..+...+...|+ .+
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPE 153 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhh
Confidence 211 2245677788888888888888888776542 11 1244444444555555 00
Q ss_pred HHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcc---C-CCCChhhHHhHHHHHHccCchhHHHHHHHhh
Q 012879 158 FARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACE---Y-TEPSEITILAVLPAIWQNGDVKSCQLIHGYG 233 (454)
Q Consensus 158 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 233 (454)
++.+. +++|...+++..... + .+....++..+...+...|+++.|...+++.
T Consensus 154 ~a~~~------------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 209 (338)
T 3ro2_A 154 DVRNA------------------------LQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 209 (338)
T ss_dssp HHHHH------------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHH------------------------HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 00000 444444444332210 0 0111234445555555555555555555554
Q ss_pred hhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC---CC----hhhHHHHHHHHHhcCChhHHHHHHHHH
Q 012879 234 EKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER---KN----LVSWTSIISGFAMHGMGKEAVENFGRM 302 (454)
Q Consensus 234 ~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m 302 (454)
.+. +..+....++..+...+...|++++|...+++..... ++ ..++..+...+...|++++|...+++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 289 (338)
T 3ro2_A 210 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 432 1111123356666777777777777777777665431 11 345666667777777777777777766
Q ss_pred HhC----CCC-CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 303 QKV----GLK-PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 303 ~~~----~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.+. +.. ....++..+...+...|++++|...+++..+.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 542 111 11335566677777778888887777777653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-14 Score=127.04 Aligned_cols=236 Identities=7% Similarity=-0.095 Sum_probs=159.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHHHccCchhHHHHHHHhhhhcC----C-CCchHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAIWQNGDVKSCQLIHGYGEKRG----F-TAFDIRVLN 247 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~ 247 (454)
....+...|++++|+..|++..+.....++ ..++..+...+...|+++.|...+++..+.. . .+....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776653111122 2456666677777777777777776665531 1 122345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcC---CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCcHHHHH
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVER---KN----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GL-KPNRVTFL 315 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 315 (454)
.+..+|...|++++|...|++..... ++ ..++..+...|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 78888888888888888888776541 22 136777888888888888888888887661 23 33455677
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcC---CCCChhHHHHHHHHHHhcCC---hHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECE---VLPDIKHYGCLIDMLGRAGR---LEQAEKTALGIPSEITDVVVWRTLLGA 389 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~ 389 (454)
.+...+...|++++|...+++..+... .+.....+..+...|...|+ +++|+.++++..........+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 788888888888888888888765411 11112334567777777888 788888888874432234567778888
Q ss_pred HHcCCChhHHHHHHHHHHHhhcC
Q 012879 390 CSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
|...|++++|.+.++++++....
T Consensus 349 y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHCCCHHHHHHHHHHHHHHHHH
Confidence 88888888888888888876544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-14 Score=129.56 Aligned_cols=230 Identities=7% Similarity=-0.036 Sum_probs=179.5
Q ss_pred HHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCC-----hhhHH
Q 012879 213 VLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RKN-----LVSWT 280 (454)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-----~~~~~ 280 (454)
....+...|++++|...++++.+. +..+....++..+..+|...|+++.|...+++.... .++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566778999999999999998774 222224578899999999999999999999988765 122 34688
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc---CC-CCChhHHH
Q 012879 281 SIISGFAMHGMGKEAVENFGRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC---EV-LPDIKHYG 351 (454)
Q Consensus 281 ~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~-~~~~~~~~ 351 (454)
.+...|...|++++|...+++..+. +..+ ...++..+..+|...|++++|...+++..+.. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999987753 1111 12477888899999999999999999988721 12 23366788
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-----CCc-HhHHHHHHHHHHcCCC---hhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSE-----ITD-VVVWRTLLGACSFHGN---VEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
.+..+|.+.|++++|.+.+++.... .|. ...+..+...+...|+ +++|+.++++. ...+.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 8999999999999999999987654 122 2335678888889999 78888888776 222334457778999
Q ss_pred HHHhcCCcCcHHHHHHHHhhc
Q 012879 423 ILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 423 ~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.|...|++++|.+.+++..+.
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 999999999999999998774
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-13 Score=111.04 Aligned_cols=169 Identities=11% Similarity=0.038 Sum_probs=115.8
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
++.+|..+..+|...|++++|++.|++..+..| +..++..+..+|.+.|++++|...+........ .+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHHH
Confidence 566777777777777777777777777777655 566677777777777777777777777766532 244555566666
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A 399 (454)
+...++++.+...+....+. .+.+...+..+..+|.+.|++++|++.|++..+.. .+..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 67777777777777777654 23345566666777777777777777777665552 3456677777777777777777
Q ss_pred HHHHHHHHHhhcCC
Q 012879 400 ERVTRKILEMERGY 413 (454)
Q Consensus 400 ~~~~~~~~~~~~~~ 413 (454)
++.|+++++.+|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 77777777766653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-14 Score=112.89 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=149.6
Q ss_pred CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q 012879 274 KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 274 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
.++.+|..+...|...|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 467789999999999999999999999998864 336778889999999999999999999999875 33456777888
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCc
Q 012879 354 IDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGD 432 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (454)
...+...++++.|.+.+.+.... +.+...+..+...+...|++++|++.++++++..|.++.++..++.++.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88999999999999999987766 34578889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q 012879 433 AERLRRVMDERNA 445 (454)
Q Consensus 433 a~~~~~~~~~~~~ 445 (454)
|.+.+++..+.+.
T Consensus 160 A~~~~~~al~~~p 172 (184)
T 3vtx_A 160 AVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHHHTTH
T ss_pred HHHHHHHHHhCCc
Confidence 9999999887653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.56 E-value=9.7e-13 Score=116.38 Aligned_cols=217 Identities=9% Similarity=-0.039 Sum_probs=178.4
Q ss_pred hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh-------cCCh-------hHHHHHHHHhhh-cCC-ChhhHHHHHHHHH
Q 012879 224 KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK-------CGCI-------FSASKLFEDISV-ERK-NLVSWTSIISGFA 287 (454)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~-~~~-~~~~~~~l~~~~~ 287 (454)
+.|...|+++... .|.++..|..++..+.. .|++ ++|..+|++... ..| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 6788899999886 56688899988888763 5886 999999999998 466 5668999999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCc-HH-HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHH-hcCChH
Q 012879 288 MHGMGKEAVENFGRMQKVGLKPN-RV-TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLG-RAGRLE 364 (454)
Q Consensus 288 ~~g~~~~A~~~~~~m~~~~~~p~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~ 364 (454)
+.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++..+. .+++...|........ ..|+++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHH
Confidence 999999999999999985 443 33 7888888999999999999999999874 2334455544433322 379999
Q ss_pred HHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh---hcC-CCCcHHHHHHHHHhcCCcCcHHHHHHH
Q 012879 365 QAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEM---ERG-YGGDYVLMYNILAGVGRFGDAERLRRV 439 (454)
Q Consensus 365 ~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (454)
+|.++|++.... +.+...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999998776 346788999999999999999999999999995 443 556788899999999999999999999
Q ss_pred Hhhcccc
Q 012879 440 MDERNAF 446 (454)
Q Consensus 440 ~~~~~~~ 446 (454)
+.+....
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 8876553
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.8e-11 Score=118.10 Aligned_cols=391 Identities=8% Similarity=-0.006 Sum_probs=274.7
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCC---hHHHHHHHHHHHHHhcCCC-CCCCCCCChhhHHHHHHH
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAES---PQKAFLLYKQLQQIYTHSH-SPLPPLFDSFTYSFLIRT 83 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~l~~~ 83 (454)
.++.+.++.+|+...+..| .+...|...+..-.+.|+ ++.+..+|++.. ...+ . | ++..|..-+.-
T Consensus 79 ~~~~~~aR~vyEraL~~fP--~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal---~~~~~~--~---sv~LW~~Yl~f 148 (679)
T 4e6h_A 79 LKQWKQVYETFDKLHDRFP--LMANIWCMRLSLEFDKMEELDAAVIEPVLARCL---SKELGN--N---DLSLWLSYITY 148 (679)
T ss_dssp TTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT---CSSSCC--C---CHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH---HhcCCC--C---CHHHHHHHHHH
Confidence 3456778888888888876 777889999999999999 999999999997 4432 2 4 77788887776
Q ss_pred HhccCCc--------chHhHHHHHHHH-cCC-CCC-chhHHHHHHHHHh---------CCChhHHHHHHhhCCC-CCc--
Q 012879 84 CATLSHP--------NLGTQLHAVISK-VGF-QSH-VYVNTALVNMYVS---------LGFLKDSSKLFDEMPE-RNL-- 140 (454)
Q Consensus 84 ~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~-- 140 (454)
..+.++. +...++|+..+. .|. .++ ...|...+..... .++++.+..+|++... |..
T Consensus 149 ~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~ 228 (679)
T 4e6h_A 149 VRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCL 228 (679)
T ss_dssp HHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSH
T ss_pred HHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHH
Confidence 5555543 334577777665 465 454 4678888776543 3457889999998875 321
Q ss_pred -hhHHH---HHHHH----------HhcCCHHHHHHHHhh-------CCC--CC--------------------cchHHHH
Q 012879 141 -VTWNV---MITGL----------VKWGELEFARSLFEE-------MPC--RN--------------------VVSWTGI 177 (454)
Q Consensus 141 -~~~~~---ll~~~----------~~~~~~~~A~~~~~~-------~~~--~~--------------------~~~~~~l 177 (454)
.+|.. +...+ -...+++.|...+.+ +.. |. ...|...
T Consensus 229 ~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~y 308 (679)
T 4e6h_A 229 ESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEW 308 (679)
T ss_dssp HHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHH
Confidence 23322 21111 011233444444433 111 10 1234444
Q ss_pred HHHHHhcC-------ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHH-HHHHhhhhcCCCCchHHHHHHH
Q 012879 178 IDGYTRMN-------RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQ-LIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 178 ~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l 249 (454)
+..--..+ ..+.+..+|++++. ..+-....|...+..+...|+.+.|. .++++.... .|.+...+..+
T Consensus 309 i~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~--~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~--~P~s~~Lwl~~ 384 (679)
T 4e6h_A 309 IRWESDNKLELSDDLHKARMTYVYMQAAQ--HVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC--IPNSAVLAFSL 384 (679)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHH--HTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHhCCccccchhhHHHHHHHHHHHHH--HcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 44333222 13446678999988 45667888888888888999999996 999999875 56688888889
Q ss_pred HHHHHhcCChhHHHHHHHHhhhc-----------CCC------------hhhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012879 250 IDTYAKCGCIFSASKLFEDISVE-----------RKN------------LVSWTSIISGFAMHGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~-----------~~~------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 306 (454)
+....+.|+++.|.++|+++... .|+ ..+|...+....+.|+.+.|..+|.+..+.-
T Consensus 385 a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~ 464 (679)
T 4e6h_A 385 SEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK 464 (679)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999998763 132 2357777787788899999999999998761
Q ss_pred CCCcHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC----cHh
Q 012879 307 LKPNRVTFLSVLNACSH-GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT----DVV 381 (454)
Q Consensus 307 ~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~~~ 381 (454)
..++...|...+..-.+ .++.+.|.++|+...+. ++.+...+...++.....|+.+.|..+|++.....| ...
T Consensus 465 ~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~ 542 (679)
T 4e6h_A 465 KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKM 542 (679)
T ss_dssp GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 11123333333222223 35699999999999986 344566777888888889999999999999888744 346
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 382 VWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 382 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
.|...+..-.+.|+.+.+..+.+++.+..|.++
T Consensus 543 lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 543 IFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 788888888899999999999999999998765
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=124.52 Aligned_cols=240 Identities=10% Similarity=0.018 Sum_probs=140.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcc------CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc------CCC
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACE------YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR------GFT 239 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~ 239 (454)
.++..+...+...|++++|..+++++.+.. ..+....++..+...+...|++++|...++++.+. +..
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 456666677777777777777777766520 11223455666667777777777777777776654 223
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC--------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER--------K-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----- 305 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 305 (454)
+....++..+...|...|++++|...|+++.... | ....+..+...+...|++++|.+.++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 4456677778888888888888888887776541 2 2345667777778888888888888777653
Q ss_pred -CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc------CCCCCh-------hHHHHHHHHHHhcCChHHHHHHH
Q 012879 306 -GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC------EVLPDI-------KHYGCLIDMLGRAGRLEQAEKTA 370 (454)
Q Consensus 306 -~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~ 370 (454)
+..| ...++..+...+...|++++|...++++.+.. ...+.. ..+..+...+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 2122 23456677777888888888888888777530 011111 11122222333344444555555
Q ss_pred hcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 371 LGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 371 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
.......| ...++..+..+|...|++++|.+.++++++..|
T Consensus 268 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 268 KACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp ------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred hhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 55544422 345666677777777777777777777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=126.31 Aligned_cols=238 Identities=14% Similarity=0.025 Sum_probs=176.6
Q ss_pred ChhhHHhHHHHHHccCchhHHHHHHHhhhhcC------CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc-------
Q 012879 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRG------FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE------- 272 (454)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------- 272 (454)
+..++..+...+...|++++|..+++++.+.. ..+....++..+..+|...|++++|...|++....
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 35678888899999999999999999988731 13446778899999999999999999999988765
Q ss_pred -CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc--
Q 012879 273 -RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV------GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC-- 341 (454)
Q Consensus 273 -~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 341 (454)
.| ...++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|..+++.+.+..
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 12 3457888889999999999999999998764 2223 34567788899999999999999999987641
Q ss_pred ---C-CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---------CC-------cHhHHHHHHHHHHcCCChhHHHH
Q 012879 342 ---E-VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---------IT-------DVVVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 342 ---~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~p-------~~~~~~~l~~~~~~~g~~~~A~~ 401 (454)
+ .+....++..+..+|...|++++|.+.++++... .+ ....+..+...+...+.+.++..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1 1223557788899999999999999999887653 11 11233334445566778888889
Q ss_pred HHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 402 VTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.+++.....|.....+..++.+|.+.|++++|.+.+++..+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 999998888888888999999999999999999999988764
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-11 Score=111.83 Aligned_cols=261 Identities=12% Similarity=0.011 Sum_probs=126.3
Q ss_pred HHHhcCChHHHHHHHHHHHHccCCCCC-hh----hHHhHHHHHHccCchhHHHHHHHhhhhcC----CCCchHHHHHHHH
Q 012879 180 GYTRMNRSNEALALFRKMVACEYTEPS-EI----TILAVLPAIWQNGDVKSCQLIHGYGEKRG----FTAFDIRVLNCLI 250 (454)
Q Consensus 180 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~ 250 (454)
.+...|++++|...+++.... . +++ .. ++..+...+...|+++.|...+++..... ........+..+.
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEE-L-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHT-C-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHc-C-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 444555555555555555543 1 111 11 23344445555556665555555544321 0000112344455
Q ss_pred HHHHhcCChhHHHHHHHHhhhcC--------C-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--cHHHHHHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVER--------K-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLK--P--NRVTFLSV 317 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~--------~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~~~~~l 317 (454)
..+...|++++|.+.+++..... | ....+..+...+...|++++|...+++..+.... + ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 55666666666666666554430 1 1123444555556666666666666655442111 1 12344455
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHhcCCCCCCc-----HhHHHHHH
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYG-----CLIDMLGRAGRLEQAEKTALGIPSEITD-----VVVWRTLL 387 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~p~-----~~~~~~l~ 387 (454)
...+...|++++|...+++......-......+. ..+..+...|++++|...+++.....|. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 5555666666666666666554311111101111 1223355666666666666665544111 12344555
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCC------CcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYG------GDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
..+...|++++|...++++.+..+... ..+..++.++...|+.++|.+.+++...
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 566666666666666666655443311 2344455566666666666666655543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=4.9e-12 Score=115.42 Aligned_cols=234 Identities=12% Similarity=0.006 Sum_probs=157.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHHHccCchhHHHHHHHhhhhcCC-----CCchHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAIWQNGDVKSCQLIHGYGEKRGF-----TAFDIRVLN 247 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~ 247 (454)
....+...|++++|+..|++..+.....++ ..++..+...+...|+++.|...+++..+... .+....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 444566778888888888777653111222 34566677777777887777777777665311 111345677
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcHHHHHH
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKPNRVTFLS 316 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~~~~~ 316 (454)
.+..+|...|++++|.+.|++.... .++ ..++..+...|...|++++|...+++..+. +.+....++..
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 266 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFG 266 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHH
Confidence 7888888888888888888877654 122 235677778888888888888888887661 22233566777
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGRAGR---LEQAEKTALGIPSEITDVVVWRTLLGAC 390 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 390 (454)
+...+.+.|++++|...+++..+...-..+ ...+..+...|...|+ +.+|+..+++..........+..+...|
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 788888888888888888888775222111 3344555566667777 7888888887544322334566788888
Q ss_pred HcCCChhHHHHHHHHHHHhh
Q 012879 391 SFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~ 410 (454)
...|++++|.+.++++++..
T Consensus 347 ~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHH
Confidence 88888888888888887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.5e-13 Score=125.75 Aligned_cols=196 Identities=13% Similarity=0.023 Sum_probs=98.3
Q ss_pred cchHHHHHHHHHhcCCh-HHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHH
Q 012879 171 VVSWTGIIDGYTRMNRS-NEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCL 249 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 249 (454)
...+..+...+...|++ ++|+..|++..+. .+.+...+..+...+...|++++|...++++.+. .| +...+..+
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p-~~~~~~~l 176 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CK-NKVSLQNL 176 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CC-CHHHHHHH
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CC-CHHHHHHH
Confidence 34455555555555555 5555555555542 2233445555555555555555555555555554 23 24455555
Q ss_pred HHHHHhc---------CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCC--C
Q 012879 250 IDTYAKC---------GCIFSASKLFEDISVERK-NLVSWTSIISGFAMH--------GMGKEAVENFGRMQKVGLK--P 309 (454)
Q Consensus 250 ~~~~~~~---------g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~--p 309 (454)
..+|... |++++|++.|++..+..| +...|..+..+|... |++++|+..|++..+.... -
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 5555555 555555555555555444 344455555555554 5555555555555543110 1
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
+...+..+..++...|++++|...|++..+. .+.+...+..+..++...|++++|.+.+.++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4444555555555555555555555555443 1122334444555555555555555544443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=5.3e-11 Score=108.52 Aligned_cols=315 Identities=11% Similarity=0.006 Sum_probs=178.9
Q ss_pred hhhhhhHHHHHHHH--HccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHH--HhccCCcchHh---------
Q 012879 28 LHHSQLFNTLLHFY--SLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRT--CATLSHPNLGT--------- 94 (454)
Q Consensus 28 ~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~--~~~~~~~~~a~--------- 94 (454)
.|+..+-+.|-+.| .+.+++++|..+++++.+....--. -+ +...|-.++.. ....+....+.
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~-~~---~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~ 82 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEE-DQ---DLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT 82 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCC-CH---HHHHHHHHHHHHHHHHHHTCCC--------CHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcc-cH---HHHHHHHHHHHHHHHHHhhcCcccccccccchH
Confidence 36666777777777 8899999999999998743222111 02 33444444332 11122233333
Q ss_pred HHHHHHHHcCCCCCc----hhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 012879 95 QLHAVISKVGFQSHV----YVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC-- 168 (454)
Q Consensus 95 ~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-- 168 (454)
+.++.+.....+.+. ..+......+...|++++|...|++..+ ++.....
T Consensus 83 ~~l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------------------------~~~~~~~~~ 138 (378)
T 3q15_A 83 ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEK------------------------ELPFVSDDI 138 (378)
T ss_dssp HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------------------------TGGGCCCHH
T ss_pred HHHHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH------------------------HHhhCCChH
Confidence 555554332211111 1122233334455666666555544321 1111111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC-----hhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCC
Q 012879 169 RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS-----EITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFT 239 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~ 239 (454)
....++..+...|...|+++.|+..+++..+.....++ ..++..+...+...|++++|.+.+++..+. +..
T Consensus 139 ~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~ 218 (378)
T 3q15_A 139 EKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND 218 (378)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH
Confidence 01234555666666666766666666665542111111 345566666777777777777776666553 111
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhh-----cCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISV-----ERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP 309 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p 309 (454)
+....++..+..+|...|++++|.+.|++... ..| ...++..+...+.+.|++++|...+++..+. +-+.
T Consensus 219 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 298 (378)
T 3q15_A 219 RFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 22345677788888888888888888887766 333 3456777778888888888888888887653 1122
Q ss_pred cHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 310 NRVTFLSVLNACSHGGL---VEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
....+..+...+...++ ..+|..+++.. +..| ....+..+...|...|++++|.+.|++..
T Consensus 299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~----~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 299 YKELFLFLQAVYKETVDERKIHDLLSYFEKK----NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC----CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 23345555566667777 66666666552 2222 24456677888888888888888887653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.4e-12 Score=106.83 Aligned_cols=208 Identities=6% Similarity=-0.092 Sum_probs=147.3
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHH
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSI 282 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l 282 (454)
+.|+..+......+...|++++|...|+...+.. ++++...+..+..++...|++++|++.|++.....| +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 4566778888888888899999999888888874 214667777788888888899999988888888766 45677888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHH
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVGLKPNR-------VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGC 352 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ 352 (454)
...+...|++++|+..+++..+... .+. ..|..+...+...|++++|...|+.+.+ ..|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 8888888888888888888877532 233 3466677777888888888888888875 3454 456667
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
+..+|...|+. .++++... ..+...|.... ....+.+++|+..++++++..|.++.+...+..+
T Consensus 159 l~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 159 LGVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 77777655543 22222222 12333333332 2334568999999999999999887666655544
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-12 Score=103.24 Aligned_cols=171 Identities=14% Similarity=-0.024 Sum_probs=119.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
....+..+...+...|++++|...|+++....| +...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344566677777777788888877777766644 55667777777777777777777777776652 2355666667777
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A 399 (454)
+...|++++|.+.++.+.+. .+.+...+..+..++...|++++|.+.++++... +.+..++..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 77777788888777777764 2334566666777777777777777777766554 23456677777777777888888
Q ss_pred HHHHHHHHHhhcCCCC
Q 012879 400 ERVTRKILEMERGYGG 415 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~ 415 (454)
.+.++++++..|.+..
T Consensus 164 ~~~~~~~~~~~~~~~~ 179 (186)
T 3as5_A 164 LPHFKKANELDEGASV 179 (186)
T ss_dssp HHHHHHHHHHHHCCCG
T ss_pred HHHHHHHHHcCCCchh
Confidence 8888877777776543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4.8e-12 Score=123.62 Aligned_cols=169 Identities=12% Similarity=0.061 Sum_probs=100.3
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
.|.+...++.|..+|.+.|++++|++.|++..+..| +..++..+..+|.+.|++++|+..|++..+.. +-+...|..+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455666777777777777777777777777776655 45566667777777777777777777766642 1234566666
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
..++...|++++|++.|++..+. .| +...|..+..+|.+.|++++|++.|++..+..| +...+..+..++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 66666666666666666666653 22 244455555555555555555555555444322 23445555555555555
Q ss_pred hhHHHHHHHHHHHhhc
Q 012879 396 VEMGERVTRKILEMER 411 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~ 411 (454)
+++|.+.++++++..+
T Consensus 161 ~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVA 176 (723)
T ss_dssp CTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCh
Confidence 5555555555554433
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=106.53 Aligned_cols=169 Identities=14% Similarity=0.035 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM 356 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 356 (454)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+. .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 456778888999999999999999987753 346778888999999999999999999999875 23467788889999
Q ss_pred HHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHH
Q 012879 357 LGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAER 435 (454)
Q Consensus 357 ~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (454)
+...|++++|.+.++++... +.+...+..+...+...|++++|.+.++++++..|.++..+..++.++...|++++|.+
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999988766 44678888999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHhhcccccC
Q 012879 436 LRRVMDERNAFKV 448 (454)
Q Consensus 436 ~~~~~~~~~~~~~ 448 (454)
.+++..+......
T Consensus 166 ~~~~~~~~~~~~~ 178 (186)
T 3as5_A 166 HFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCch
Confidence 9999987654433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.2e-10 Score=101.74 Aligned_cols=273 Identities=11% Similarity=0.003 Sum_probs=152.5
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCCh----hhHHHHHHHHhccCCcchHhHHHHHHHHcCCC-CC
Q 012879 34 FNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDS----FTYSFLIRTCATLSHPNLGTQLHAVISKVGFQ-SH 108 (454)
Q Consensus 34 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 108 (454)
+......+...|++++|...+++.. ..... . +. .+++.+...+...|++++|...+++..+.... ++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al---~~~~~--~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLAL---EELPP--G---WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---HTCCT--T---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH---HcCCC--C---chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 3444556678899999999999987 43322 2 32 25666677788899999999999887763211 11
Q ss_pred ----chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC----CcchHHHHHHH
Q 012879 109 ----VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCR----NVVSWTGIIDG 180 (454)
Q Consensus 109 ----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~l~~~ 180 (454)
..++..+...+...|++++|...+++. .++......+ ....+..+...
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a------------------------l~~~~~~~~~~~~~~~~~~~~la~~ 144 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKA------------------------FQLINEQHLEQLPMHEFLVRIRAQL 144 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------------HHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------------------------HHHHHHhccccCcHHHHHHHHHHHH
Confidence 123455666777778887777766543 2222222221 11244556666
Q ss_pred HHhcCChHHHHHHHHHHHHccCCC--C--ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch-HHHH----HHHHH
Q 012879 181 YTRMNRSNEALALFRKMVACEYTE--P--SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD-IRVL----NCLID 251 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~----~~l~~ 251 (454)
+...|++++|...+++.... ... + ...++..+...+...|++++|...+++.......+.. .... ...+.
T Consensus 145 ~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 223 (373)
T 1hz4_A 145 LWAWARLDEAEASARSGIEV-LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVI 223 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHH-hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHH
Confidence 67777777777777776553 111 0 1234555556666666666666666665543111101 1111 12333
Q ss_pred HHHhcCChhHHHHHHHHhhhcCCC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCcH-HHHHHHHHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERKN-----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKPNR-VTFLSVLNAC 321 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~-~~~~~l~~~~ 321 (454)
.+...|++++|...+++.....+. ...+..+...+...|++++|...+++.... |..++. ..+..+..++
T Consensus 224 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~ 303 (373)
T 1hz4_A 224 YWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLY 303 (373)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Confidence 455667777777777666553221 113445555666666666666666665431 211122 1344444555
Q ss_pred hcCCChHHHHHHHHHHHH
Q 012879 322 SHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~ 339 (454)
...|+.++|...+++...
T Consensus 304 ~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 304 WQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHH
Confidence 566666666666665544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.3e-11 Score=105.81 Aligned_cols=227 Identities=10% Similarity=-0.007 Sum_probs=142.5
Q ss_pred hcCChHHHHHHHHHHHHcc------CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc------CCCCchHHHHHHHH
Q 012879 183 RMNRSNEALALFRKMVACE------YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR------GFTAFDIRVLNCLI 250 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~ 250 (454)
..|++++|+..|++..+.. ..+....++..+...+...|++++|...++++.+. +..|....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 4566666666666554410 11223456677777777788888887777777654 33344566788888
Q ss_pred HHHHhcCChhHHHHHHHHhhhc--------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-cHHHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV------GLKP-NRVTF 314 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~ 314 (454)
.+|...|++++|.+.|++.... .| ...++..+...+...|++++|...+++..+. +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877654 12 2456777778888888888888888887654 1122 34567
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhc------CCCCC-hhHHHHHHHHHHhcC------ChHHHHHHHhcCCCCCC-cH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEEC------EVLPD-IKHYGCLIDMLGRAG------RLEQAEKTALGIPSEIT-DV 380 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~p-~~ 380 (454)
..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+ .+..+...++......| ..
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHH
Confidence 777888888889998888888887631 11222 223333333333322 24444455555544423 34
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.++..+...|...|++++|...++++++.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56777888888888888888888887754
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.5e-12 Score=105.81 Aligned_cols=196 Identities=13% Similarity=-0.026 Sum_probs=154.5
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC--CChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER--KNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
+.++..+......+...|++++|+..|++..... ++...+..+..++...|++++|+..+++..+... -+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 3477889999999999999999999999998875 5777777788999999999999999999998642 256778888
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc---HhHHHHHH
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDI-------KHYGCLIDMLGRAGRLEQAEKTALGIPSEITD---VVVWRTLL 387 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~ 387 (454)
..++...|++++|...++...+.. +.+. ..|..+...+...|++++|++.|+++....|+ ...+..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 899999999999999999998752 2234 45778888889999999999999999888565 56777777
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
.+|... +...++++....+.+...|. .......|.+++|...+++..+.+.
T Consensus 161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 161 VLFYNN-----GADVLRKATPLASSNKEKYA--SEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHH-----HHHHHHHHGGGTTTCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHH-----HHHHHHHHHhcccCCHHHHH--HHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 777554 44556666666555533333 3334556778999999999887654
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.5e-11 Score=117.53 Aligned_cols=164 Identities=10% Similarity=0.007 Sum_probs=116.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHH
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 250 (454)
..+|+.+...+.+.|++++|+..|++..+. .+-+..++..+..++.+.|++++|...|+++.+. .|.+...+..+.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 356777777777777777777777777763 3344667777777777777777777777777775 455677777777
Q ss_pred HHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHH
Q 012879 251 DTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (454)
.+|...|++++|++.|++..+..| +...|+.+..+|...|++++|++.|++..+.. +-+...+..+..++...|++++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 777777777777777777777655 55677777777777777777777777777653 2245667777777777777777
Q ss_pred HHHHHHHHHH
Q 012879 330 GLNFFDKMVE 339 (454)
Q Consensus 330 a~~~~~~~~~ 339 (454)
|.+.++++.+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777766654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.34 E-value=4.3e-10 Score=96.60 Aligned_cols=243 Identities=8% Similarity=-0.027 Sum_probs=160.9
Q ss_pred HHHHhcCCHHHHHHHHhhCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 148 TGLVKWGELEFARSLFEEMPCRNVV-SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 148 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
+-..-.|++..++.-...+...+.. .-..+.++|...|++... . ...|....+..+...+ ..+ +
T Consensus 21 kn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~-~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------D-PTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------C-SSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------C-CCCHHHHHHHHHHHHh-ccc----H
Confidence 3345578888888866666543332 333455788888887742 1 2234444444444443 222 6
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC---ChhhHHHHHHHHHhcCChhHHHHHHHHHH
Q 012879 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK---NLVSWTSIISGFAMHGMGKEAVENFGRMQ 303 (454)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 303 (454)
...+++....+ +++......+..++...|++++|++++.+.....| +...+..++..+.+.|+.+.|.+.+++|.
T Consensus 86 ~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 86 IEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 67777776654 22455556788888888999999999888766543 45667778888888999999999998887
Q ss_pred hCCCCC-----cHHHHHHHHHHHh--cCC--ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 304 KVGLKP-----NRVTFLSVLNACS--HGG--LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 304 ~~~~~p-----~~~~~~~l~~~~~--~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
+. .| +..+...+..++. ..| +..+|..+|+++... .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 75 55 3556666665532 223 788889999988653 3443333444557888899999988887654
Q ss_pred CC-----------CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 375 SE-----------ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 375 ~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
.. +.++.++..+|......|+ +|.++++++.+..|.++
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 42 2355666566666666676 78888888888888776
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.31 E-value=5.2e-11 Score=102.51 Aligned_cols=192 Identities=7% Similarity=-0.069 Sum_probs=106.6
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-C-CcHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN----LVSWTSIISGFAMHGMGKEAVENFGRMQKVGL-K-PNRVTFL 315 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~-p~~~~~~ 315 (454)
++..+..+...+.+.|++++|+..|+++....|+ ...+..+..+|.+.|++++|+..|++..+... . .....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 3444444444445555555555555555444332 23444444445555555555555555444311 0 1122333
Q ss_pred HHHHHHhc--------CCChHHHHHHHHHHHHhcCCCCCh---------------hHHHHHHHHHHhcCChHHHHHHHhc
Q 012879 316 SVLNACSH--------GGLVEEGLNFFDKMVEECEVLPDI---------------KHYGCLIDMLGRAGRLEQAEKTALG 372 (454)
Q Consensus 316 ~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~ 372 (454)
.+..++.. .|++++|...|+.+.+.+.-.+.. ..+..+..+|.+.|++++|+..|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 34444444 555555555555555431111111 1124567788889999999998888
Q ss_pred CCCCCCc----HhHHHHHHHHHHcC----------CChhHHHHHHHHHHHhhcCCCC---cHHHHHHHHHhcCCcCcH
Q 012879 373 IPSEITD----VVVWRTLLGACSFH----------GNVEMGERVTRKILEMERGYGG---DYVLMYNILAGVGRFGDA 433 (454)
Q Consensus 373 ~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a 433 (454)
+....|+ ...+..+..+|... |++++|+..++++++..|+++. ....+..++.+.|+++++
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence 7665443 45677777777755 8889999999999999888753 344455555555555443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.9e-11 Score=102.75 Aligned_cols=201 Identities=12% Similarity=0.035 Sum_probs=118.3
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHc------cCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc------CCC
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVAC------EYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR------GFT 239 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~ 239 (454)
.++..+...+...|++++|+..++++.+. +..+....++..+...+...|++++|...++++.+. ...
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 123 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH 123 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45666677777777777777777776653 112233456677777777777777777777776654 112
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc--------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE--------RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----- 305 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----- 305 (454)
|....++..+..+|...|++++|...|+++... .| ...++..+...|...|++++|...+++..+.
T Consensus 124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~ 203 (283)
T 3edt_B 124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE 203 (283)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 435667777788888888888888888777664 22 2346667777788888888888888776642
Q ss_pred --CCCCcH-HHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 306 --GLKPNR-VTFLSVLNACSHGGL------VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 306 --~~~p~~-~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
...+.. ..+..+.......+. +..+...++.... ..+....++..+...|...|++++|.+++++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 204 FGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV--DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp SSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 111211 122222222222222 2222222222110 111234567778888888888888888887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.30 E-value=6.2e-10 Score=95.66 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=88.8
Q ss_pred HHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 012879 190 ALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDI 269 (454)
Q Consensus 190 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 269 (454)
|+..|++.... + +++..++..+..++...|++++|.+++.+....+-.+.+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~-~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKD-K-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTT-S-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45555555443 2 344444445555555666666666666655444321235555555666666666666666666666
Q ss_pred hhcCC-----ChhhHHHHHHHH--HhcC--ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 270 SVERK-----NLVSWTSIISGF--AMHG--MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 270 ~~~~~-----~~~~~~~l~~~~--~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.+..| +..+...++.++ ...| ++.+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.+.
T Consensus 163 ~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 163 TNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55544 133333344332 1122 566666666665443 233222233333555566666666666554432
Q ss_pred c-C-------CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 012879 341 C-E-------VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT 378 (454)
Q Consensus 341 ~-~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 378 (454)
. . -+.++.+...+|......|+ +|.++++++.+..|
T Consensus 241 ~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 241 YYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp HHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred cccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 1 0 02234444344444444454 55555555554433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.7e-11 Score=102.86 Aligned_cols=212 Identities=9% Similarity=-0.071 Sum_probs=136.9
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCChhH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
++++|...|.+. ...+...|++++|...+.+..+. |..+....+++.+..+|.+.|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 366666666655 23456677777777777766553 2112125677788888888888888
Q ss_pred HHHHHHHhhhcCC---C----hhhHHHHHHHHHhc-CChhHHHHHHHHHHhCCC----CCc-HHHHHHHHHHHhcCCChH
Q 012879 262 ASKLFEDISVERK---N----LVSWTSIISGFAMH-GMGKEAVENFGRMQKVGL----KPN-RVTFLSVLNACSHGGLVE 328 (454)
Q Consensus 262 a~~~~~~~~~~~~---~----~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~----~p~-~~~~~~l~~~~~~~~~~~ 328 (454)
|+..|++.....+ + ..+++.+...|... |++++|+..|++..+... .+. ..++..+...+...|+++
T Consensus 96 A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 175 (292)
T 1qqe_A 96 AVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHH
Confidence 8888887766522 2 34677777788885 888888888888765311 101 345777778888888888
Q ss_pred HHHHHHHHHHHhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH------hHHHHHHHHHH--cCCC
Q 012879 329 EGLNFFDKMVEECEVLPDI-----KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV------VVWRTLLGACS--FHGN 395 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~------~~~~~l~~~~~--~~g~ 395 (454)
+|...|+...+...-.+.. ..+..+..++...|++++|...|++.....|+. ..+..++.++. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 8888888887652111121 145667777888888888888888877763432 12344555554 4566
Q ss_pred hhHHHHHHHHHHHhhcCC
Q 012879 396 VEMGERVTRKILEMERGY 413 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~ 413 (454)
+++|+..|+++.+.+|..
T Consensus 256 ~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHhccCCccHHHH
Confidence 777777777766555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=9.2e-10 Score=96.31 Aligned_cols=212 Identities=13% Similarity=-0.054 Sum_probs=152.1
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcc---CCCCC-hhhHHhHHHHHHccCchhHHHHHH
Q 012879 155 ELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACE---YTEPS-EITILAVLPAIWQNGDVKSCQLIH 230 (454)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~ 230 (454)
++++|...|++. ...|...|++++|+..|.+..... +.+++ ..+|..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 367777766554 456777888888888888776531 11122 457888888888888998888888
Q ss_pred HhhhhcC----CCCchHHHHHHHHHHHHhc-CChhHHHHHHHHhhhcCC---C----hhhHHHHHHHHHhcCChhHHHHH
Q 012879 231 GYGEKRG----FTAFDIRVLNCLIDTYAKC-GCIFSASKLFEDISVERK---N----LVSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 231 ~~~~~~~----~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
++..+.. .......++..+..+|... |++++|+..|++.....| + ..++..+...+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 8877641 1111245788899999996 999999999999877533 1 34678888999999999999999
Q ss_pred HHHHHhCCCCCcH------HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh------hHHHHHHHHHH--hcCChH
Q 012879 299 FGRMQKVGLKPNR------VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI------KHYGCLIDMLG--RAGRLE 364 (454)
Q Consensus 299 ~~~m~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~ 364 (454)
|++..+....... ..+..+..++...|++++|...|++..+ +.|+. ..+..++.+|. ..++++
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~ 257 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLS 257 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999885433221 1566777888899999999999999874 33432 13445566665 457899
Q ss_pred HHHHHHhcCCCCCCcH
Q 012879 365 QAEKTALGIPSEITDV 380 (454)
Q Consensus 365 ~A~~~~~~~~~~~p~~ 380 (454)
+|+..|+++....|+.
T Consensus 258 ~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 258 EHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHTTSSCCCHHH
T ss_pred HHHHHhccCCccHHHH
Confidence 9999999988764443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.4e-09 Score=93.40 Aligned_cols=169 Identities=7% Similarity=-0.058 Sum_probs=99.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---hhhHHhHHHHHHccCchhHHHHHHHhhhhcCC-CCchHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---EITILAVLPAIWQNGDVKSCQLIHGYGEKRGF-TAFDIRV 245 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 245 (454)
+...+..+...+.+.|++++|+..|+++.+. .+.+ ...+..+..++...|+++.|...++.+.+..- .+.....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 4455556666677777777777777777663 2222 45566666777777777777777777766521 1223456
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHhhhcCCCh-hhH-----------------HHHHHHHHhcCChhHHHHHH
Q 012879 246 LNCLIDTYAK--------CGCIFSASKLFEDISVERKNL-VSW-----------------TSIISGFAMHGMGKEAVENF 299 (454)
Q Consensus 246 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~ 299 (454)
+..+..++.. .|++++|+..|+++....|+. ... ..+...|.+.|++++|+..|
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 6666777777 777777777777777665532 222 33345555666666666666
Q ss_pred HHHHhCCCCC--cHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHh
Q 012879 300 GRMQKVGLKP--NRVTFLSVLNACSHG----------GLVEEGLNFFDKMVEE 340 (454)
Q Consensus 300 ~~m~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 340 (454)
+++.+..... ....+..+..++... |++++|...|+.+.+.
T Consensus 172 ~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 172 EAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6655532111 223444444555433 5556666666666554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.19 E-value=7.1e-10 Score=92.95 Aligned_cols=188 Identities=10% Similarity=-0.029 Sum_probs=126.1
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--HHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL----VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR--VTFL 315 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~ 315 (454)
++..+..+...+.+.|++++|+..|+++....|+. ..+..+..++.+.|++++|+..|+++.+....... ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 45566677888899999999999999998876642 46777888999999999999999998875322111 2333
Q ss_pred HHHHHHhc------------------CCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 316 SVLNACSH------------------GGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 316 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+..++.. .|++++|...|+.+.+. .|+ ...+...... +.....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l----~~~~~~---------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRL----VFLKDR---------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHH----HHHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHH----HHHHHH----------
Confidence 44444433 45666666666666653 122 2222111100 000000
Q ss_pred CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC---CcHHHHHHHHHhcCCcCcHHHHHHHHhhcccccC
Q 012879 377 ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---GDYVLMYNILAGVGRFGDAERLRRVMDERNAFKV 448 (454)
Q Consensus 377 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (454)
.......+...|.+.|++++|+..++++++..|+++ ..+..++.++.+.|++++|.+.++.+...+....
T Consensus 146 --~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 --LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp --HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred --HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 001123456778889999999999999999888754 5688899999999999999999998887665543
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=89.91 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=27.7
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 249 LIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 249 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
+..+|.+.|++++|+..|++..+..| +...+..+...+...|++++|+..|++..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555555555544433 334444444445555555555555554444
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.18 E-value=7e-08 Score=90.47 Aligned_cols=357 Identities=8% Similarity=-0.060 Sum_probs=225.3
Q ss_pred CCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccC-
Q 012879 10 PNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLS- 88 (454)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~- 88 (454)
+...++.+|+...+.-| . |+++.+..+|++.. .. . | +...|...+.-..+.+
T Consensus 10 ~i~~aR~vyer~l~~~P---~--------------~~~e~~~~iferal---~~--~--p---s~~LW~~Y~~f~~~~~~ 62 (493)
T 2uy1_A 10 ELSSPSAIMEHARRLYM---S--------------KDYRSLESLFGRCL---KK--S--Y---NLDLWMLYIEYVRKVSQ 62 (493)
T ss_dssp --CCHHHHHHHHHHHHH---T--------------TCHHHHHHHHHHHS---TT--C--C---CHHHHHHHHHHHHHHC-
T ss_pred chHHHHHHHHHHHHHCC---C--------------CCHHHHHHHHHHHh---cc--C--C---CHHHHHHHHHHHHHhCc
Confidence 47788888888887765 2 88999999999997 31 2 6 8889888888777666
Q ss_pred CcchHhHHHHHHHHc-CC-CCCchhHHHHHHHHHh----CCChhHHHHHHhhCCC-CCc---hhHHHHHHHHH-------
Q 012879 89 HPNLGTQLHAVISKV-GF-QSHVYVNTALVNMYVS----LGFLKDSSKLFDEMPE-RNL---VTWNVMITGLV------- 151 (454)
Q Consensus 89 ~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~---~~~~~ll~~~~------- 151 (454)
..+....+|+..+.. |. +.+...|...+..+.. .|+.+.+.++|++... |.. ..|......-.
T Consensus 63 ~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~ 142 (493)
T 2uy1_A 63 KKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITG 142 (493)
T ss_dssp ---CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHH
T ss_pred hHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccH
Confidence 356778888887764 43 3356778877776542 4678889999998865 321 12222211110
Q ss_pred ------hcCCHHHHHHHHhhCCC----CCcchHHHHHHHHHhcC--C-----hHHHHHHHHHHHHccCCCCChhhHHhHH
Q 012879 152 ------KWGELEFARSLFEEMPC----RNVVSWTGIIDGYTRMN--R-----SNEALALFRKMVACEYTEPSEITILAVL 214 (454)
Q Consensus 152 ------~~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 214 (454)
..+.+..|..+++.+.. .+...|...+..-...+ - .+.+..+|++++. ..+.+...|...+
T Consensus 143 ~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~--~~p~~~~lW~~ya 220 (493)
T 2uy1_A 143 KKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILD--SFYYAEEVYFFYS 220 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH--HTTTCHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHH--cCCCCHHHHHHHH
Confidence 01122233333332221 13335555444432221 1 3456789999888 4566678888888
Q ss_pred HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHH-HHHHHHhhhcC-------C---ChhhHHHHH
Q 012879 215 PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA-SKLFEDISVER-------K---NLVSWTSII 283 (454)
Q Consensus 215 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~-------~---~~~~~~~l~ 283 (454)
..+...|+.+.|..++++.... |.+...+.. |......++. ..+.+...... + ....|...+
T Consensus 221 ~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~ 293 (493)
T 2uy1_A 221 EYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL 293 (493)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence 8889999999999999999987 445444432 2222111221 11221110000 1 124566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSH-GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR 362 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (454)
....+.++.+.|..+|++. +. ...+...|......-.. .++.+.|..+|+...+.++ .++..+...++...+.|+
T Consensus 294 ~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~ 369 (493)
T 2uy1_A 294 NYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGD 369 (493)
T ss_dssp HHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCC
Confidence 7666778899999999998 32 12344444332221112 2369999999999988632 234556667787788999
Q ss_pred hHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 363 LEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 363 ~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.+.|..+|+.+.. ....|...+.--...|+.+.+..+++++.+.
T Consensus 370 ~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 370 EENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999999999853 5778888888777889999999999888853
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=90.10 Aligned_cols=170 Identities=12% Similarity=0.060 Sum_probs=116.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHh----------------HHHHHHccCchhHHHHHHHhhhhcCC
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILA----------------VLPAIWQNGDVKSCQLIHGYGEKRGF 238 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~ 238 (454)
......+...|++++|+..|++..+. .+.+...+.. +..++...|++++|...+++..+.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-- 83 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-- 83 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
Confidence 33445666777777777777777663 2223445555 788888999999999999998887
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCcHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM--GKEAVENFGRMQKVGLKPNRVTFL 315 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~~~ 315 (454)
.|.+...+..+..+|...|++++|...|+++.+..| +..++..+...|...|+ ...+...+..... ..|....+.
T Consensus 84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~ 161 (208)
T 3urz_A 84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARY 161 (208)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHH
Confidence 566888899999999999999999999999988877 66778888877765543 3444555554432 233333333
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHH
Q 012879 316 SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCL 353 (454)
Q Consensus 316 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 353 (454)
....++...|++++|...|++..+ +.|+......+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~---l~P~~~~~~~l 196 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVIL---RFPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTT---TSCCHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHH---hCCCHHHHHHH
Confidence 344455567888888888888874 45665544433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.4e-10 Score=86.95 Aligned_cols=131 Identities=16% Similarity=0.230 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
.|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++.+... . +.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 34555666666666666666666665543 224455555556666666666666666666553 1 22344455555555
Q ss_pred HhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 358 GRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
...|++++|.+.++++... +.+..++..+...+...|++++|...++++++..|
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 5555555555555554433 22344455555555555555555555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-09 Score=80.88 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=64.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
|..+...+...|++++|..+++++.+. .+.+...+..+...+...|+++.|...++++.+.+ |.+...+..+...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CCchHHHHHHHHHH
Confidence 445555566666666666666666552 22334444555555555555555555555555442 22444455555555
Q ss_pred HhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 254 AKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
...|++++|.+.++++....| +...+..+...+...|++++|...++++.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555544433 334444444555555555555555554443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.1e-09 Score=105.44 Aligned_cols=172 Identities=10% Similarity=-0.054 Sum_probs=129.8
Q ss_pred HccCchhHHHHHHHhhh--------hcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHh
Q 012879 218 WQNGDVKSCQLIHGYGE--------KRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAM 288 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~ 288 (454)
...|++++|.+.++++. +. .|.+...+..+..+|...|++++|++.|+++.+..| +...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 67788888888888877 33 455677888888888888888888888888887755 66778888888888
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (454)
.|++++|+..|++..+... -+...+..+..++.+.|++++ .+.|+++.+. -+.+...|..+..++.+.|++++|.+
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888888877532 245667777788888888888 8888888764 22346677888888888888888888
Q ss_pred HHhcCCCCCCc-HhHHHHHHHHHHcCCC
Q 012879 369 TALGIPSEITD-VVVWRTLLGACSFHGN 395 (454)
Q Consensus 369 ~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 395 (454)
.|+++.+..|+ ...+..+..++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 88888877554 5667777777766555
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-09 Score=90.63 Aligned_cols=189 Identities=13% Similarity=-0.011 Sum_probs=137.9
Q ss_pred ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCC-CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh----hHH
Q 012879 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFT-AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV----SWT 280 (454)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~ 280 (454)
+...+..+...+...|++++|...|+.+.+..-. +.....+..+..+|.+.|++++|+..|+++.+..|+.. .+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677788899999999999999999986321 22356788899999999999999999999998867432 455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 281 SIISGFAM------------------HGMGKEAVENFGRMQKVGLKPNRV-TFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 281 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
.+..++.. .|++++|...|+++.+. .|+.. ...... ....+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~--------------~l~~~~~~- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATK--------------RLVFLKDR- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHH--------------HHHHHHHH-
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHH--------------HHHHHHHH-
Confidence 55555554 57899999999999886 34332 221111 11111110
Q ss_pred CCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH----hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC
Q 012879 342 EVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV----VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG 415 (454)
Q Consensus 342 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 415 (454)
.......+...|.+.|++++|...|+++.+..|+. ..+..+..++.+.|+.++|++.++.+...+|.+..
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 01122346677889999999999999988764542 56888899999999999999999999988887543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.12 E-value=2.1e-09 Score=105.50 Aligned_cols=189 Identities=14% Similarity=0.047 Sum_probs=143.8
Q ss_pred HhcCChHHHHHHHHHHH--------HccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 182 TRMNRSNEALALFRKMV--------ACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
...|++++|++.+++.. + ..+.+...+..+...+...|++++|...++++.+. .|.+...+..+..+|
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence 67788888888888887 3 33555677888888888889999998888888886 466788888888888
Q ss_pred HhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHH
Q 012879 254 AKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLN 332 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 332 (454)
...|++++|++.|++..+..| +...+..+..++.+.|++++ ++.|++..+.. +-+...+..+..++.+.|++++|.+
T Consensus 478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 889999999999988888766 56778888888888888888 88888888753 2356677888888888899999988
Q ss_pred HHHHHHHhcCCCCC-hhHHHHHHHHHHhcC--------ChHHHHHHHhcCCCCCCc
Q 012879 333 FFDKMVEECEVLPD-IKHYGCLIDMLGRAG--------RLEQAEKTALGIPSEITD 379 (454)
Q Consensus 333 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~p~ 379 (454)
.|+++.+ +.|+ ...+..+..++...+ ++++|.+.+..+....|+
T Consensus 556 ~~~~al~---l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPP---TSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCT---TSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcc---cCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 8888764 3454 556666666665543 367777777777654344
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.8e-11 Score=91.77 Aligned_cols=141 Identities=6% Similarity=-0.087 Sum_probs=99.7
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL 363 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (454)
.+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|++..+. -+-+..+|..+..+|.+.|++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCch
Confidence 344456677777777665543 22 2334455667777777888888777777764 123466777777778888888
Q ss_pred HHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHH-HHHHHHhhcCCCCcHHHHHHHHHhcCC
Q 012879 364 EQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERV-TRKILEMERGYGGDYVLMYNILAGVGR 429 (454)
Q Consensus 364 ~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (454)
++|+..|++..+..| +..+|..+...|.+.|++++|.+. ++++++..|.++.+|......+...|+
T Consensus 82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888877766544 467788888888888888776654 588888888888888888888877775
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=5.8e-09 Score=90.88 Aligned_cols=163 Identities=8% Similarity=-0.025 Sum_probs=86.9
Q ss_pred ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHH-H
Q 012879 206 SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSII-S 284 (454)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~-~ 284 (454)
+...+..+...+...|+++.|...++++.+. .|.+...+..+..++...|++++|...++++....|+........ .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 3444555555555666666666666666554 344556666666666666666666666666655545433222222 2
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChH
Q 012879 285 GFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 285 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (454)
.+...++.++|...+++..+.. +.+...+..+...+...|++++|...|+++.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2444555555666666555542 224445555555666666666666666666554111111344555555555555555
Q ss_pred HHHHHHh
Q 012879 365 QAEKTAL 371 (454)
Q Consensus 365 ~A~~~~~ 371 (454)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5555444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=9.4e-09 Score=85.11 Aligned_cols=174 Identities=9% Similarity=-0.092 Sum_probs=82.8
Q ss_pred HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcC----ChhHHHHHHHH
Q 012879 226 CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHG----MGKEAVENFGR 301 (454)
Q Consensus 226 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~ 301 (454)
|.+.|++..+.| ++..+..+...|...+++++|+..|++..+. .++..+..+...|.. + ++++|..+|++
T Consensus 5 A~~~~~~aa~~g----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 5 PGSQYQQQAEAG----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp TTHHHHHHHHTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 445555555543 4555555566666666666666666655542 244444445544444 3 55555555555
Q ss_pred HHhCCCCCcHHHHHHHHHHHhc----CCChHHHHHHHHHHHHhcCCC-CChhHHHHHHHHHHh----cCChHHHHHHHhc
Q 012879 302 MQKVGLKPNRVTFLSVLNACSH----GGLVEEGLNFFDKMVEECEVL-PDIKHYGCLIDMLGR----AGRLEQAEKTALG 372 (454)
Q Consensus 302 m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 372 (454)
..+.| +...+..+...|.. .+++++|..+|+...+. +.. ..+..+..|...|.. .+++++|.++|++
T Consensus 79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 55443 33344444444443 45555555555555432 110 013444444444444 4455555555554
Q ss_pred CCCCCCcHhHHHHHHHHHHcC-C-----ChhHHHHHHHHHHHh
Q 012879 373 IPSEITDVVVWRTLLGACSFH-G-----NVEMGERVTRKILEM 409 (454)
Q Consensus 373 ~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~ 409 (454)
.....++...+..|...|... | +.++|+..++++.+.
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 433322333444444444321 1 455555555555444
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.1e-07 Score=82.59 Aligned_cols=233 Identities=9% Similarity=0.005 Sum_probs=169.1
Q ss_pred HhcCC-hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC--chhHHHHHHHhhhhcCCCCchHHHHHHHHHHH----H
Q 012879 182 TRMNR-SNEALALFRKMVACEYTEPSEITILAVLPAIWQNG--DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY----A 254 (454)
Q Consensus 182 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~ 254 (454)
.+.|. .++|+.+++.++.. .+-+...|+.-...+...| +++++.++++.+... .|.+..+|+.-..++ .
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~iL~~~~~ 118 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLIIGQIME 118 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHHHHHHHH
Confidence 34444 46788888888873 3344555677777777777 888888888888876 454666665544444 4
Q ss_pred hc---CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC--
Q 012879 255 KC---GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGK--EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-- 326 (454)
Q Consensus 255 ~~---g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 326 (454)
.. +++++++++++++.+..| +..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.-...+...+.
T Consensus 119 ~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~ 197 (306)
T 3dra_A 119 LNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLA 197 (306)
T ss_dssp HTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGC
T ss_pred hccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 44 788899999999888766 7778888877778888887 899999999886544 66666666656666665
Q ss_pred ----hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHhcCCCC----CCcHhHHHHHHHHHHcCCChh
Q 012879 327 ----VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ-AEKTALGIPSE----ITDVVVWRTLLGACSFHGNVE 397 (454)
Q Consensus 327 ----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~----~p~~~~~~~l~~~~~~~g~~~ 397 (454)
++++++.++.+... -+-|...|+.+...+.+.|+..+ +.++.+++... ..+...+..+...|.+.|+.+
T Consensus 198 ~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 198 TDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred hhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 78888888888875 23467788888888888887544 55677766553 236678888888888999999
Q ss_pred HHHHHHHHHHH-hhcCCCCcHHHHH
Q 012879 398 MGERVTRKILE-MERGYGGDYVLMY 421 (454)
Q Consensus 398 ~A~~~~~~~~~-~~~~~~~~~~~l~ 421 (454)
+|+++++.+.+ .+|.....|...+
T Consensus 276 ~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 276 ESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHHHHHhccChHHHHHHHHHH
Confidence 99999999886 5776655555443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.2e-09 Score=85.10 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=9.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
+..+...+...|++++|+..|++.
T Consensus 43 ~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 43 KLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333333444444444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.9e-09 Score=84.59 Aligned_cols=61 Identities=20% Similarity=0.040 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc---HhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD---VVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
...+..+..++...|++++|...|+++....|+ ...+..+...+...|+.++|...+++.+
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 344444444444444444444444444443222 2344444445555555555555554443
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-09 Score=84.93 Aligned_cols=118 Identities=8% Similarity=-0.086 Sum_probs=54.3
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 262 (454)
..|++++|+..+.+.... .+.+...+..+...|.+.|++++|.+.++++.+. .|.++.++..+..+|...|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 334444444444444321 1112233334444444445555555444444443 333455555555555555555555
Q ss_pred HHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHH-HHHHHh
Q 012879 263 SKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVEN-FGRMQK 304 (454)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 304 (454)
+..|++..+..| +..++..+...|.+.|++++|.+. +++..+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 555555554444 344455555555555555443332 344444
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.7e-09 Score=104.22 Aligned_cols=158 Identities=10% Similarity=-0.035 Sum_probs=64.9
Q ss_pred ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 258 CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
++++|.+.|++..+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+..++...|++++|.+.+++
T Consensus 4 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34444444444433333 23344444444444444444444444444432 11233444444444444444444444444
Q ss_pred HHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcC---CChhHHHHHHHHHHHhhcC
Q 012879 337 MVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFH---GNVEMGERVTRKILEMERG 412 (454)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~ 412 (454)
..+. .+.+...+..+..+|.+.|++++|.+.+++..+..| +...+..+...+... |++++|.+.++++++.+|.
T Consensus 83 al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~ 160 (568)
T 2vsy_A 83 ASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVG 160 (568)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCC
T ss_pred HHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCc
Confidence 4432 112234444444455555555555555544443322 334445555555555 5555555555555555555
Q ss_pred CCCcHH
Q 012879 413 YGGDYV 418 (454)
Q Consensus 413 ~~~~~~ 418 (454)
+...+.
T Consensus 161 ~~~~~~ 166 (568)
T 2vsy_A 161 AVEPFA 166 (568)
T ss_dssp CSCHHH
T ss_pred ccChHH
Confidence 444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=1e-08 Score=89.37 Aligned_cols=180 Identities=9% Similarity=-0.038 Sum_probs=127.8
Q ss_pred HHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 156 LEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 156 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
.+...+.+......+...+..+...+...|++++|...|++..+. .+.+...+..+...+...|++++|...++++..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334444444444444556667777888888888888888888773 345567777888888888888888888888877
Q ss_pred cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHH
Q 012879 236 RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-NRVT 313 (454)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~ 313 (454)
. .|............+...++.++|.+.|++.....| +...+..+...+...|++++|+..|.++.+..... +...
T Consensus 180 ~--~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 180 Q--DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp G--GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred h--hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 5 342333333444456677778888888888777766 56778888888888888888888888887753221 2556
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 314 FLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
+..+...+...|+.++|...|++...
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 77788888888888888887777654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-08 Score=85.74 Aligned_cols=216 Identities=11% Similarity=0.108 Sum_probs=174.4
Q ss_pred chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhcCC-ChhhHHHHHHHH----Hhc---CC
Q 012879 222 DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG--CIFSASKLFEDISVERK-NLVSWTSIISGF----AMH---GM 291 (454)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~----~~~---g~ 291 (454)
..++|..+.+.+... .|.+..+|+.-..++...| +++++++.++.+....| +..+|+.-...+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 346899999999987 5768888998888898888 99999999999998877 666777655554 455 78
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChH--HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCC------h
Q 012879 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVE--EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGR------L 363 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 363 (454)
+++++.+++++.+...+ +...|+.-...+.+.|.++ ++++.++.+.+. . +-+...|+.-...+.+.|+ +
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 99999999999986433 6777777666677778877 999999999986 3 3466777766666777776 8
Q ss_pred HHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChh-HHHHHHHHHHHhh---cCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 364 EQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVE-MGERVTRKILEME---RGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 364 ~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
+++++.++++... +-|...|+.+...+.+.|+.. .+.++.+++.+.+ +.++.++..++.++.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8999999887766 447888999888888888754 4667888887766 6677788899999999999999999999
Q ss_pred HHhh
Q 012879 439 VMDE 442 (454)
Q Consensus 439 ~~~~ 442 (454)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9876
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.4e-08 Score=82.59 Aligned_cols=174 Identities=9% Similarity=-0.088 Sum_probs=111.4
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC----ChHHHHHHHHH
Q 012879 261 SASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG----LVEEGLNFFDK 336 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~ 336 (454)
+|.+.|++..+. .++..+..+...|...+++++|+..|++..+.| +...+..+...|.. + ++++|..+|+.
T Consensus 4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 345555555553 456666667777777777777777777776654 34455555555655 5 67777777777
Q ss_pred HHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCc---HhHHHHHHHHHHc----CCChhHHHHHHHH
Q 012879 337 MVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITD---VVVWRTLLGACSF----HGNVEMGERVTRK 405 (454)
Q Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~~~~~~ 405 (454)
..+. + +...+..|...|.. .+++++|.++|++..+..|. +..+..|...|.. .+++++|+..|++
T Consensus 79 A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 79 AVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 7553 2 44555666666665 66777777777776666332 5666666666666 6677777777777
Q ss_pred HHHhhcCCCCcHHHHHHHHHhc-C-----CcCcHHHHHHHHhhcc
Q 012879 406 ILEMERGYGGDYVLMYNILAGV-G-----RFGDAERLRRVMDERN 444 (454)
Q Consensus 406 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 444 (454)
+.+. +.++..+..++.+|..- | ++++|.+.+++..+.|
T Consensus 155 A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 7766 44555666677766543 2 6677777777766654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.2e-10 Score=106.08 Aligned_cols=156 Identities=10% Similarity=-0.090 Sum_probs=121.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEK 368 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 368 (454)
.|++++|.+.+++..+.. +-+...+..+...+...|++++|.+.+++..+. .+.+...+..+..+|...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 478899999999988753 235678888999999999999999999999864 23457888999999999999999999
Q ss_pred HHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc---CCcCcHHHHHHHHhhcc
Q 012879 369 TALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV---GRFGDAERLRRVMDERN 444 (454)
Q Consensus 369 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 444 (454)
.+++..+..| +...+..+..+|...|++++|++.++++++..|.+...+..++.++... |++++|.+.+++..+.+
T Consensus 79 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 79 LLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999877644 5788999999999999999999999999999999999999999999999 99999999999998876
Q ss_pred ccc
Q 012879 445 AFK 447 (454)
Q Consensus 445 ~~~ 447 (454)
...
T Consensus 159 p~~ 161 (568)
T 2vsy_A 159 VGA 161 (568)
T ss_dssp CCC
T ss_pred Ccc
Confidence 543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.03 E-value=3.7e-09 Score=93.14 Aligned_cols=202 Identities=9% Similarity=0.023 Sum_probs=116.5
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 262 (454)
..|++++|.+++++..+. . +.+ + +...++++.|...|..+ ...|...|++++|
T Consensus 3 ~~~~~~eA~~~~~~a~k~-~-~~~------~---~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A 55 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKY-L-KTS------F---MKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQA 55 (307)
T ss_dssp CHHHHHHHHHHHHHHHHH-H-CCC------S---SSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHHH-c-ccc------c---cCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHH
Confidence 457888999999988763 1 111 0 01134555555444432 3455666777777
Q ss_pred HHHHHHhhhcC---CC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHH
Q 012879 263 SKLFEDISVER---KN----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 263 ~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a 330 (454)
...|.+..... .+ ..+|+.+...|...|++++|+..|++..+. |-.. ...++..+...|.. |++++|
T Consensus 56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A 134 (307)
T 2ifu_A 56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKA 134 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHH
Confidence 77666655431 11 235666666677777777777777665432 1111 12455566666666 777777
Q ss_pred HHHHHHHHHhcCCCC----ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCc----HhHHHHHHHHHHcCCChhHH
Q 012879 331 LNFFDKMVEECEVLP----DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITD----VVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~----~~~~~~l~~~~~~~g~~~~A 399 (454)
+..|++..+...-.. ...++..+...|.+.|++++|++.|++.... .++ ...+..++.++...|++++|
T Consensus 135 ~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 135 VHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 777776665311100 1345666677777777777777777766543 111 12455555666666777777
Q ss_pred HHHHHHHHHhhcCC
Q 012879 400 ERVTRKILEMERGY 413 (454)
Q Consensus 400 ~~~~~~~~~~~~~~ 413 (454)
...+++++ ..|..
T Consensus 215 ~~~~~~al-~~p~~ 227 (307)
T 2ifu_A 215 QKCVRESY-SIPGF 227 (307)
T ss_dssp HHHHHHHT-TSTTS
T ss_pred HHHHHHHh-CCCCC
Confidence 77777777 66653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.02 E-value=1.5e-08 Score=95.04 Aligned_cols=336 Identities=10% Similarity=-0.043 Sum_probs=212.9
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCC-hhHHHHHHhhCCC------CCchhHHHHHHHHH----hcCCH
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGF-LKDSSKLFDEMPE------RNLVTWNVMITGLV----KWGEL 156 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~------~~~~~~~~ll~~~~----~~~~~ 156 (454)
|+++.+..+|+..+.. .|++..|...+....+.++ .+....+|+.... .+...|...+..+. ..|++
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7899999999999884 4799999999988877763 3556666666442 35567887777654 35678
Q ss_pred HHHHHHHhhCCC-CCc---chHHHHHHHHH-------------hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc
Q 012879 157 EFARSLFEEMPC-RNV---VSWTGIIDGYT-------------RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ 219 (454)
Q Consensus 157 ~~A~~~~~~~~~-~~~---~~~~~l~~~~~-------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (454)
+.+.++|++... |.. ..|......-. ..+.+..|..+++++... -...+...|...+..-..
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~-~~~~s~~~W~~y~~~E~~ 184 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL-IRGWSVKNAARLIDLEME 184 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH-HhhccHHHHHHHHHHHhc
Confidence 899999988765 211 12221111100 112333445555555432 111233355544444322
Q ss_pred cC----c---hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCCh
Q 012879 220 NG----D---VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMG 292 (454)
Q Consensus 220 ~~----~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 292 (454)
.+ + .+.+..+|+++... .|.++..|...+..+.+.|+.+.|..+|++.... |....... .|....+.
T Consensus 185 ~~~~~~~~~~~~Rv~~~ye~al~~--~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~---~y~~~~e~ 258 (493)
T 2uy1_A 185 NGMKLGGRPHESRMHFIHNYILDS--FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSL---YYGLVMDE 258 (493)
T ss_dssp CTTCCCHHHHHHHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHH---HHHHHTTC
T ss_pred CCccCcchhhHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHH---HHHhhcch
Confidence 11 1 34567889998886 3557889999999999999999999999999988 75443222 22222222
Q ss_pred hHHHHHHHHHHhC---------CCCC---cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc
Q 012879 293 KEAVENFGRMQKV---------GLKP---NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA 360 (454)
Q Consensus 293 ~~A~~~~~~m~~~---------~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 360 (454)
++. ++.+.+. +..+ ....|...+....+.++.+.|..+|+.+ +. . ..+..+|...+..-...
T Consensus 259 ~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~ 332 (493)
T 2uy1_A 259 EAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYA 332 (493)
T ss_dssp THH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHH
T ss_pred hHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHH
Confidence 222 2222221 0011 1244666666666778899999999999 43 2 23444554333322333
Q ss_pred -CChHHHHHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHH
Q 012879 361 -GRLEQAEKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438 (454)
Q Consensus 361 -g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (454)
++++.|..+|+......|+ +..+...++-....|+.+.|..+|+++ +.....|...+..-...|+.+.+..+++
T Consensus 333 ~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~ 408 (493)
T 2uy1_A 333 TGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVD 408 (493)
T ss_dssp HCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3699999999987765343 445566777777889999999999997 2345567778888888899999999888
Q ss_pred HHhh
Q 012879 439 VMDE 442 (454)
Q Consensus 439 ~~~~ 442 (454)
+..+
T Consensus 409 ~~~~ 412 (493)
T 2uy1_A 409 QKMD 412 (493)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8775
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=94.28 Aligned_cols=96 Identities=9% Similarity=-0.113 Sum_probs=47.6
Q ss_pred hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHH
Q 012879 207 EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISG 285 (454)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~ 285 (454)
...+..+...+...|++++|...++.+.+. .|.+...+..+..+|.+.|++++|...+++..+..| +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334444445555555555555555555544 233444555555555555555555555555544433 33444444455
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 012879 286 FAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~ 304 (454)
+...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.94 E-value=2.4e-08 Score=87.96 Aligned_cols=224 Identities=10% Similarity=-0.070 Sum_probs=145.9
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHH
Q 012879 152 KWGELEFARSLFEEMPCRNVVSWTGIIDGYTR-MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIH 230 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 230 (454)
..|++++|.+++++..+..... +.. .+++++|...|.+. ...+...|++++|...+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~-------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS-------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC-------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc-------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHH
Confidence 3577888888887654311111 112 46777777777765 23456678888887777
Q ss_pred Hhhhhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcC---CC----hhhHHHHHHHHHhcCChhHHHHHH
Q 012879 231 GYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVER---KN----LVSWTSIISGFAMHGMGKEAVENF 299 (454)
Q Consensus 231 ~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~----~~~~~~l~~~~~~~g~~~~A~~~~ 299 (454)
.+..+. +.......+++.+..+|...|++++|+..|++..... .+ ..+++.+...|.. |++++|+..|
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~ 138 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY 138 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 776553 1111124577788888888888888888888776541 11 2456777777877 8999998888
Q ss_pred HHHHhC----CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHH
Q 012879 300 GRMQKV----GLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKTA 370 (454)
Q Consensus 300 ~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 370 (454)
++..+. |..+ ...++..+...+...|++++|+..|++..+...-.++ ...+..+..++...|++++|...|
T Consensus 139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~ 218 (307)
T 2ifu_A 139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV 218 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 887652 1111 1356777888888899999999999888764111111 235566677777889999999999
Q ss_pred hcCCCCCCc------HhHHHHHHHHHHcCCChhHHHH
Q 012879 371 LGIPSEITD------VVVWRTLLGACSFHGNVEMGER 401 (454)
Q Consensus 371 ~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~ 401 (454)
++.. ..|+ ......++.++ ..|+.+.+.+
T Consensus 219 ~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 219 RESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8877 5332 12344455555 5677665555
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.93 E-value=5.4e-08 Score=80.55 Aligned_cols=129 Identities=13% Similarity=-0.039 Sum_probs=71.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchh
Q 012879 145 VMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVK 224 (454)
Q Consensus 145 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (454)
.+...+...|++++|...|++...++...+..+..++...|++++|+..|++..+. .+.+...+..+..++...|+++
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcccHH
Confidence 34444555566666666666655555556666666666666666666666666552 2334445555555555555555
Q ss_pred HHHHHHHhhhhcC--------------CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 225 SCQLIHGYGEKRG--------------FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 225 ~a~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
+|...++.+.+.. ..|.....+..+..+|...|++++|.+.|++.....|+
T Consensus 89 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 89 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 5555555555431 11223355556666666666666666666666555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.6e-07 Score=82.02 Aligned_cols=168 Identities=10% Similarity=-0.056 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCc--
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNL-------VSWTSIISGFAMHGMGKEAVENFGRMQKVGL---KPN-- 310 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~-- 310 (454)
...+...+..+...|++++|.+.+++..+..+.. ..+..+...+...|++++|+..+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3445556677778888888888887766543321 1233344556667788888888777764311 111
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-------
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT------- 378 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p------- 378 (454)
..+++.+...|...|++++|...++++.+.....|+ ..++..+..+|...|++++|.+.+++.....+
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 346677777777788888888888777632111111 14666777777777777777777776544311
Q ss_pred cHhHHHHHHHHHHcCCChhHH-HHHHHHHHHhh
Q 012879 379 DVVVWRTLLGACSFHGNVEMG-ERVTRKILEME 410 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 410 (454)
-..+|..+...|...|++++| ...++++++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 145667777777777777777 66677766543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.1e-09 Score=82.30 Aligned_cols=95 Identities=8% Similarity=-0.112 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
.+..+...+.+.|++++|...|+++....| +...|..+..+|...|++++|++.|+++++..|.++..|..++.+|.+.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 344444555555555555555555544422 3455555555555556666666666666666555555555566666666
Q ss_pred CCcCcHHHHHHHHhhc
Q 012879 428 GRFGDAERLRRVMDER 443 (454)
Q Consensus 428 g~~~~a~~~~~~~~~~ 443 (454)
|++++|.+.|++..+.
T Consensus 118 g~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 118 KAPLKAKECFELVIQH 133 (151)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666665555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.91 E-value=7.6e-09 Score=77.62 Aligned_cols=110 Identities=8% Similarity=-0.056 Sum_probs=83.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGAC 390 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~ 390 (454)
..+......+.+.|++++|++.|++..+. -+.+...|..+..+|.+.|++++|++.+++.... +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 35566667777888888888888887764 2335677777788888888888888888877665 33567788888888
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
...|++++|++.|+++++..|.+..++..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888887776666554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.90 E-value=5.5e-08 Score=85.01 Aligned_cols=160 Identities=14% Similarity=-0.017 Sum_probs=101.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCC-CCCcHH----HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHH
Q 012879 283 ISGFAMHGMGKEAVENFGRMQKVG-LKPNRV----TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCL 353 (454)
Q Consensus 283 ~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l 353 (454)
+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++.+.+...-.++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445566666666666666665532 122211 2233455556666777777777777653111122 2256677
Q ss_pred HHHHHhcCChHHHHHHHhcCCC-------CCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC------CCcHHH
Q 012879 354 IDMLGRAGRLEQAEKTALGIPS-------EIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYVL 419 (454)
Q Consensus 354 ~~~~~~~g~~~~A~~~~~~~~~-------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~ 419 (454)
..+|...|++++|...|+++.. ..+ ...++..+...|...|++++|++.++++++..+.. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 7777777777777777776652 111 23467788888888888888888888888776542 345777
Q ss_pred HHHHHHhcCC-cCcHHHHHHHHhh
Q 012879 420 MYNILAGVGR-FGDAERLRRVMDE 442 (454)
Q Consensus 420 l~~~~~~~g~-~~~a~~~~~~~~~ 442 (454)
++.++.+.|+ +++|.+.+++...
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888885 4888888877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.89 E-value=9.2e-08 Score=81.10 Aligned_cols=182 Identities=7% Similarity=-0.083 Sum_probs=101.3
Q ss_pred ccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHH-------HHHHhccCCcchHhHHHHHHHHcCCCCCc------
Q 012879 43 LAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFL-------IRTCATLSHPNLGTQLHAVISKVGFQSHV------ 109 (454)
Q Consensus 43 ~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------ 109 (454)
..+++..|.+.|.++. ...+. ....|..+ ..++...++..++...+....+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~---~~dP~------~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~ 86 (282)
T 4f3v_A 18 LPMSEARSLDLFTEIT---NYDES------ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIA 86 (282)
T ss_dssp TTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEE
T ss_pred cCCCHHHHHHHHHHHH---HhChh------hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhc
Confidence 6899999999999999 77766 67788877 4556666666666666554443 22221
Q ss_pred ----------------hhHHHHHHHHHhCCChhHHHHHHhhCCC--CCchhHHHHHHHHHhcCCHHHHHHHHhhCCCC-C
Q 012879 110 ----------------YVNTALVNMYVSLGFLKDSSKLFDEMPE--RNLVTWNVMITGLVKWGELEFARSLFEEMPCR-N 170 (454)
Q Consensus 110 ----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-~ 170 (454)
..+..+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+..... +
T Consensus 87 ~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d 166 (282)
T 4f3v_A 87 IGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPD 166 (282)
T ss_dssp CCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred cCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence 1223345556666677777777766653 32223444444556666666666666544331 1
Q ss_pred ----cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC--hhhHHhHHHHHHccCchhHHHHHHHhhhhc
Q 012879 171 ----VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS--EITILAVLPAIWQNGDVKSCQLIHGYGEKR 236 (454)
Q Consensus 171 ----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 236 (454)
...+..+..++...|++++|+..|++.... ...|. .........++.+.|+.++|...|+++...
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 124445555566666666666666655532 11122 223334444444445555555555544443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.89 E-value=8.3e-08 Score=83.88 Aligned_cols=166 Identities=12% Similarity=-0.041 Sum_probs=126.9
Q ss_pred hhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH-----HHHHHHHHHHhcCCChHHHHHHHHHHHHhcC--CCCC--h
Q 012879 277 VSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNR-----VTFLSVLNACSHGGLVEEGLNFFDKMVEECE--VLPD--I 347 (454)
Q Consensus 277 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~--~ 347 (454)
..+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|...++...+... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 44556677889999999999999988775322211 2234455667888999999999999875411 1111 4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCc-----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC------
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITD-----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------ 413 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 413 (454)
.+++.+...|...|++++|...++++... .|+ ..++..+...|...|++++|++.++++++..+..
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 57888999999999999999999887632 222 2588899999999999999999999999876441
Q ss_pred CCcHHHHHHHHHhcCCcCcH-HHHHHHHhh
Q 012879 414 GGDYVLMYNILAGVGRFGDA-ERLRRVMDE 442 (454)
Q Consensus 414 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 442 (454)
..+|..++.++.+.|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 34677899999999999999 776776543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.87 E-value=2.5e-07 Score=80.79 Aligned_cols=211 Identities=7% Similarity=-0.130 Sum_probs=142.2
Q ss_pred HHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 012879 193 LFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+.++... ...|+..+...+...+.-.-+ .++..-... .......+...+..+...|++++|...+++....
T Consensus 33 ~~s~~e~g-~~~~~~~~l~~i~~~l~~~~~-----~~~~~~~~~--~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~ 104 (293)
T 3u3w_A 33 EVSRIESG-AVYPSMDILQGIAAKLQIPII-----HFYEVLIYS--DIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK 104 (293)
T ss_dssp HHHHHHTT-SCCCCHHHHHHHHHHHTCCTH-----HHHHTTTSS--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHCC-CCCCCHHHHHHHHHHhCcCHH-----HHhCCCCCC--cchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence 34444442 456777777777666643221 111111100 0111223344577888899999999999998775
Q ss_pred CCC-hh------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 273 RKN-LV------SWTSIISGFAMHGMGKEAVENFGRMQKVGLK-PN----RVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 273 ~~~-~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.+. .. .+..+...+...|++++|+..+++..+.... ++ ..+++.+...|...|++++|..+|+.+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 184 (293)
T 3u3w_A 105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ 184 (293)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 332 11 2334566667778999999999998874222 22 236888888999999999999999998853
Q ss_pred c----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------CCcHhHHHHHHHHHHcCCC-hhHHHHHHHHHH
Q 012879 341 C----EVLPD-IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-------ITDVVVWRTLLGACSFHGN-VEMGERVTRKIL 407 (454)
Q Consensus 341 ~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~ 407 (454)
. +..+. ..++..+...|.+.|++++|.+.+++.... ..-..+|..+..+|...|+ +++|.+.+++++
T Consensus 185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 11111 346788899999999999999998876654 1125688899999999995 699999999998
Q ss_pred Hhhc
Q 012879 408 EMER 411 (454)
Q Consensus 408 ~~~~ 411 (454)
+...
T Consensus 265 ~i~~ 268 (293)
T 3u3w_A 265 FFFD 268 (293)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.87 E-value=2e-08 Score=75.99 Aligned_cols=118 Identities=11% Similarity=0.011 Sum_probs=81.2
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHH
Q 012879 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLG 388 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~ 388 (454)
+...+..+...+...|++++|...++...+. .+.+...+..+..+|...|++++|.+.+++.... +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 3445555666666666666666666666542 2224555666666666666666666666665544 234667777888
Q ss_pred HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCC
Q 012879 389 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGR 429 (454)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (454)
++...|++++|++.++++++..|.+...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888899999999999888888888888888888877664
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-06 Score=74.31 Aligned_cols=231 Identities=11% Similarity=0.064 Sum_probs=153.2
Q ss_pred HHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC-chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc-C-
Q 012879 181 YTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC-G- 257 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 257 (454)
..+.+..++|++++++++.. .+-+..+|+.--..+...| +++++..+++.+... .|.+..+|+.-..++.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--nPKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--NLKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHCCS
T ss_pred HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCC
Confidence 33445556788888888763 3344555666666666667 488888888888876 465777777777666666 6
Q ss_pred ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC--
Q 012879 258 CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGK--------EAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-- 326 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-- 326 (454)
++++++++++++.+..| |..+|+.-.-.+.+.|.++ ++++.++++.+..+. |...|+.....+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 78888888888888755 6677776555555555555 888888888876433 66677776666766665
Q ss_pred -----hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHhcCCCC-----
Q 012879 327 -----VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL--------------------EQAEKTALGIPSE----- 376 (454)
Q Consensus 327 -----~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~----- 376 (454)
++++++.++++... .+-|...|+.+-..+.+.|+. .+..++..++...
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 57888888887764 234566777666666666653 3445555555443
Q ss_pred --CCcHhHHHHHHHHHHcCCChhHHHHHHHHHH-HhhcCCCCcHH
Q 012879 377 --ITDVVVWRTLLGACSFHGNVEMGERVTRKIL-EMERGYGGDYV 418 (454)
Q Consensus 377 --~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~ 418 (454)
.+....+..+++.|...|+.++|.++++.+. +.+|-....|.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2566778888888888899999999999886 33444333333
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-08 Score=79.90 Aligned_cols=128 Identities=10% Similarity=-0.027 Sum_probs=82.9
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACS 391 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 391 (454)
.+..+...+...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+++.... +.+...+..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555566666666666666666653 1234556666666666777777777766665554 234566777777777
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCcHHHHHH--HHHhcCCcCcHHHHHHHHhh
Q 012879 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYN--ILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~ 442 (454)
..|++++|.+.++++++..|.+...+..+.. .+.+.|++++|.+.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 7788888888888887777776666543333 36677777777777766543
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-08 Score=75.13 Aligned_cols=120 Identities=10% Similarity=-0.067 Sum_probs=93.0
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHH
Q 012879 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLG 388 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 388 (454)
+...+..+...+...|++++|...++..... .+.+...+..+..++...|++++|.+.+++.....| +...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 3445666667777778888888888877764 233566777777788888888888888877665533 4677888888
Q ss_pred HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 389 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
.+...|++++|...++++++..|.+...+..++.++.+.|+++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998888888888999988888764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-08 Score=74.37 Aligned_cols=116 Identities=16% Similarity=0.141 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGA 389 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~ 389 (454)
...+..+...+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|..+++++... +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 455666666777777777777777777664 2234566677777777777777777777776554 3356677788888
Q ss_pred HHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 390 CSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+...|++++|...++++++..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999998888887777777777776544
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=3e-07 Score=75.98 Aligned_cols=127 Identities=12% Similarity=-0.078 Sum_probs=101.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|+..|++.. .|+...+..+...+...|++++|...+++..+. .|.+...+..+..+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence 34556777888899999998888763 457788888888888899999999988888886 35577888888888
Q ss_pred HHhcCChhHHHHHHHHhhhcCC-Ch----------------hhHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 012879 253 YAKCGCIFSASKLFEDISVERK-NL----------------VSWTSIISGFAMHGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~-~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 306 (454)
|...|++++|.+.|++.....| +. ..+..+..++...|++++|...|++..+..
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8889999999988888877544 22 567777788888888888888888887753
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=70.89 Aligned_cols=98 Identities=8% Similarity=-0.090 Sum_probs=51.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+......|.+.|++++|+..|++..+. .+.+...|..+..++...|++++|...+++..+. .|.+...|..+..+
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRL--DSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHh--hhhhhHHHHHHHHH
Confidence 3444555555556666666666555542 2334445555555555555555555555555554 23344555555555
Q ss_pred HHhcCChhHHHHHHHHhhhcCC
Q 012879 253 YAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
|...|++++|.+.|++..+..|
T Consensus 91 ~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHCCCHHHHHHHHHHHHHHCc
Confidence 5555555555555555554444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.80 E-value=3.5e-08 Score=85.59 Aligned_cols=98 Identities=5% Similarity=-0.144 Sum_probs=71.1
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHH
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 250 (454)
...+..+...+...|++++|+..|++..+. .+.+...+..+..++...|++++|...++++.+. .|.+...+..+.
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLG 79 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345666777777778888888888777763 3345667777777777778888888777777765 455677777777
Q ss_pred HHHHhcCChhHHHHHHHHhhhc
Q 012879 251 DTYAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 251 ~~~~~~g~~~~a~~~~~~~~~~ 272 (454)
.+|...|++++|...|++....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777788888887777776664
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=4.2e-09 Score=81.63 Aligned_cols=116 Identities=9% Similarity=-0.064 Sum_probs=87.3
Q ss_pred HHHHHHhCCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 298 NFGRMQKVGLKP-NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 298 ~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.++++.+. .| +...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|+..|+++...
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555443 33 3445666777888889999999999888764 2335677788888888889999998888887766
Q ss_pred CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 377 IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 377 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
.| +...+..+..+|...|++++|++.|+++++..|.++...
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 33 567788888888888999999999998888888766543
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-07 Score=73.13 Aligned_cols=96 Identities=8% Similarity=-0.043 Sum_probs=47.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|...|++..+. .+.+..++..+...+...|+++.|...+++..+. .|.+...+..+..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 3444455555555555555555555542 2233444444444555555555555555554443 23344444445555
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 012879 253 YAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~ 272 (454)
+...|++++|...|++....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh
Confidence 55555555555555544443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-08 Score=81.97 Aligned_cols=128 Identities=9% Similarity=0.039 Sum_probs=98.9
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcCCh-
Q 012879 286 FAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM-LGRAGRL- 363 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 363 (454)
+...|++++|...+++..+.. +.+...+..+...+...|++++|...|+.+.+. .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 445788889999998887753 346678888888899999999999999998875 23356677778888 7788998
Q ss_pred -HHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 364 -EQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 364 -~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
++|...++++....| +...+..+...+...|++++|+..++++++..|.+...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 999999988776634 46778888889999999999999999999988887543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=3.5e-08 Score=87.94 Aligned_cols=95 Identities=9% Similarity=-0.103 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
...|..+..+|.+.|++++|+..++++... +.+...|..+..+|...|++++|+..|+++++..|.+..++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356677777777888888888877777665 3356777888888888888888888888888888888888888888888
Q ss_pred hcCCcCcH-HHHHHHHh
Q 012879 426 GVGRFGDA-ERLRRVMD 441 (454)
Q Consensus 426 ~~g~~~~a-~~~~~~~~ 441 (454)
+.|++++| ...+++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888877 33455543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.1e-07 Score=78.95 Aligned_cols=133 Identities=9% Similarity=-0.089 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc--HHHHHHHHHHHh
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPN--RVTFLSVLNACS 322 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~ 322 (454)
....+...+...|++++|.++|+.+....|+......+...+.+.+++++|+..|+...... .|. ...+..+..++.
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHH
Confidence 34445556666666666666666666555533344444455566666666666665433321 111 123444555566
Q ss_pred cCCChHHHHHHHHHHHHhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc
Q 012879 323 HGGLVEEGLNFFDKMVEECEVLPD--IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD 379 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 379 (454)
..|++++|+..|++.... ...|. .........++.+.|+.++|...|+++....|+
T Consensus 183 ~LG~~~eAl~~l~~a~~g-~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDS-PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HTTCHHHHHHHHHHHHTS-TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HCCCHHHHHHHHHHHhcC-CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 666666666666665532 22132 223334444455555555555555555444333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-07 Score=72.75 Aligned_cols=101 Identities=11% Similarity=0.002 Sum_probs=71.7
Q ss_pred CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 239 TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 239 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
.|.+...+..+...+...|++++|...|++.....| +...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l 95 (148)
T 2vgx_A 17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHA 95 (148)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence 344666677777777777777777777777776655 56667777777777777777777777777653 2244566667
Q ss_pred HHHHhcCCChHHHHHHHHHHHHh
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
..++...|++++|...|+...+.
T Consensus 96 g~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 96 AECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777777888887777777664
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=3.4e-07 Score=68.67 Aligned_cols=116 Identities=5% Similarity=-0.109 Sum_probs=62.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+...+...|++++|+..|++.... .+.+...+..+...+...|+++.|...++...+. .|.+...+..+..
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHH
Confidence 34455555666666666666666666552 2334455555555555566666666665555554 2334555555555
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM 291 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 291 (454)
++...|++++|...|++.....| +...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 55556666666666555555443 34444444444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-07 Score=67.47 Aligned_cols=96 Identities=14% Similarity=0.148 Sum_probs=43.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|...++++.+. .+.+..++..+...+...|++++|...++.+.+. .|.+...+..+..+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 86 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHH
Confidence 3444445555555555555555555442 1223344444444444444444444444444443 22234444444444
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 012879 253 YAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~ 272 (454)
+...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 44444444444444444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.71 E-value=1.6e-07 Score=72.56 Aligned_cols=98 Identities=10% Similarity=-0.024 Sum_probs=45.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|+..|++.... .|.+...|..+..++...|++++|...|+++.+. .|.++..+..+..+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHHH
Confidence 4444455555555555555555555542 2233444444444444444444444444444443 23344444444444
Q ss_pred HHhcCChhHHHHHHHHhhhcCC
Q 012879 253 YAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
|...|++++|...|++.....|
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=6e-06 Score=72.49 Aligned_cols=170 Identities=11% Similarity=0.073 Sum_probs=109.7
Q ss_pred HhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCC-ChhHHHHHHhhCCC---CCchhHHHHHHHHHhc-C-CHH
Q 012879 84 CATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLG-FLKDSSKLFDEMPE---RNLVTWNVMITGLVKW-G-ELE 157 (454)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~-~-~~~ 157 (454)
....+..++|+++++.++..+ +-+..+|+.--.++...| .+++++..++.+.. .+..+|+.-.-.+.+. + +++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence 344445678999999999876 456677888888888888 58899998888875 2445676666666655 5 778
Q ss_pred HHHHHHhhCCCCC---cchHHHHHHHHHhcCChH--------HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc----
Q 012879 158 FARSLFEEMPCRN---VVSWTGIIDGYTRMNRSN--------EALALFRKMVACEYTEPSEITILAVLPAIWQNGD---- 222 (454)
Q Consensus 158 ~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 222 (454)
+++++++.+.+.+ ..+|+.-.-.+...|.++ ++++.++++.+. .+-|...|+.....+.+.+.
T Consensus 143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccc
Confidence 8888888877643 345554444444445454 777777777763 34555666666666655554
Q ss_pred ---hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC
Q 012879 223 ---VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 223 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 258 (454)
++++.+.++++... .|.+...|+-+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCC
Confidence 45555566555554 34455666555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.70 E-value=8.4e-07 Score=72.50 Aligned_cols=30 Identities=10% Similarity=-0.003 Sum_probs=16.5
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+..+...+...|++++|.+.++++++....
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 344555555566666666666655554433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.1e-07 Score=68.57 Aligned_cols=112 Identities=3% Similarity=-0.180 Sum_probs=58.6
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
..+..+...+...|++++|+..|++..+. .+.+...+..+...+...|++++|...++++.+. .|.+...+..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~ 92 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 34555555566666666666666665542 2234455555555555555555555555555554 2334555555555
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFA 287 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~ 287 (454)
++...|++++|.+.|++.....| +...+..+..++.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 55555555555555555554433 2233333433333
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.7e-08 Score=75.07 Aligned_cols=108 Identities=10% Similarity=-0.091 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGA 389 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 389 (454)
...+..+...+...|++++|...|+.+... -+.+...|..+..+|.+.|++++|...|++.....| ++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 345556667788889999999999988875 234567788888889999999999999988776633 56777888888
Q ss_pred HHcCCChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 390 CSFHGNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
|...|++++|++.++++++..|.++......
T Consensus 96 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 9999999999999999999888776554433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.1e-07 Score=76.04 Aligned_cols=120 Identities=8% Similarity=0.047 Sum_probs=72.9
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH-HHhcCCh-
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT-YAKCGCI- 259 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~- 259 (454)
...|++++|+..+++..+. .+.+...+..+...+...|+++.|...++++.+. .|.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 3456666777777666653 2345566666666666667777777766666665 34455666666666 5566666
Q ss_pred -hHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 260 -FSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 260 -~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
++|...|+++....| +...+..+...+...|++++|...|+++.+.
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 677777766666544 4555666666666667777777766666654
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.1e-08 Score=74.29 Aligned_cols=112 Identities=8% Similarity=-0.091 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGA 389 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~ 389 (454)
...+......+.+.|++++|...|+...+. .+.+...|..+..+|.+.|++++|+..+++.....| +...|..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 445666677777888888888888888764 233567777788888888888888888887766533 46677778888
Q ss_pred HHcCCChhHHHHHHHHHHHhh------cCCCCcHHHHHHHH
Q 012879 390 CSFHGNVEMGERVTRKILEME------RGYGGDYVLMYNIL 424 (454)
Q Consensus 390 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~ 424 (454)
+...|++++|++.++++++.. |.+...+..+..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888877 44444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.1e-08 Score=71.61 Aligned_cols=97 Identities=10% Similarity=-0.061 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC--CCCcHHHHHHHHH
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERG--YGGDYVLMYNILA 425 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~ 425 (454)
.+..+...+...|++++|...+++.... +.+...+..+...+...|++++|++.++++++..|. +...+..++.++.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~ 87 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR 87 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 3444445555555555555555544433 223445555555566666666666666666666555 5555556666666
Q ss_pred hc-CCcCcHHHHHHHHhhccc
Q 012879 426 GV-GRFGDAERLRRVMDERNA 445 (454)
Q Consensus 426 ~~-g~~~~a~~~~~~~~~~~~ 445 (454)
+. |++++|.+.+++..+.+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 88 YIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp TCSSCSHHHHHHHHHHGGGCC
T ss_pred HHhCCHHHHHHHHHHHhhccc
Confidence 66 666666666666555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-07 Score=70.59 Aligned_cols=95 Identities=9% Similarity=-0.050 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
.+..+...+.+.|++++|+..|++.... +.+...|..+..++...|++++|+..++++++..|.++..+..++.++...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 3444455555555555555555555444 223455555555555555555555555555555555555555555555555
Q ss_pred CCcCcHHHHHHHHhhc
Q 012879 428 GRFGDAERLRRVMDER 443 (454)
Q Consensus 428 g~~~~a~~~~~~~~~~ 443 (454)
|++++|.+.+++..+.
T Consensus 86 ~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 86 KEYASALETLDAARTK 101 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHh
Confidence 5555555555555443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.6e-07 Score=72.82 Aligned_cols=110 Identities=14% Similarity=0.002 Sum_probs=87.1
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHH
Q 012879 310 NRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLG 388 (454)
Q Consensus 310 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~ 388 (454)
+...+..+...+...|++++|+..|+...+. .+.+...|..+..+|.+.|++++|+..|++.....| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 4456667777788888888888888888765 233567778888888888888888888888776633 5778888999
Q ss_pred HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHH
Q 012879 389 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMY 421 (454)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 421 (454)
+|...|++++|++.|+++++..|.+...+....
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999999887655443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=5e-07 Score=73.88 Aligned_cols=99 Identities=9% Similarity=-0.042 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CC-C----hhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RK-N----LVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP 309 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p 309 (454)
...++..+...|...|++++|.+.+++.... .+ + ...+..+...+...|++++|...+++..+. +..+
T Consensus 65 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 144 (203)
T 3gw4_A 65 EHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQV 144 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchH
Confidence 3344555555555555655555555554443 12 1 123444555555566666666665554421 1110
Q ss_pred -cHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 310 -NRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 310 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
-..++..+...+...|++++|...+++..+.
T Consensus 145 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 145 AIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 1123445555566666666666666655543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=7.9e-06 Score=71.36 Aligned_cols=192 Identities=8% Similarity=-0.082 Sum_probs=101.1
Q ss_pred hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC--ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC-hhHHHHH
Q 012879 223 VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG--CIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM-GKEAVEN 298 (454)
Q Consensus 223 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~-~~~A~~~ 298 (454)
++.+..+++.+... .|.+..+|+.-..++.+.| .+++++.+++++.+..| |..+|+.-.-.+...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~--~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 45566666666654 3446666666655566655 36677777777766644 56666666555566666 4667777
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHhcC--------------CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc----
Q 012879 299 FGRMQKVGLKPNRVTFLSVLNACSHG--------------GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA---- 360 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 360 (454)
++++.+..+. |...|+.....+... +.++++++.+...... .+-|...|+-+-..+.+.
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~ 244 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRC 244 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCcc
Confidence 7776665433 444444333333222 3355666666666653 223444454443333333
Q ss_pred -------CChHHHHHHHhcCCCCCCcHhHHHHHHH-----HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 361 -------GRLEQAEKTALGIPSEITDVVVWRTLLG-----ACSFHGNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 361 -------g~~~~A~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
+.++++++.++++.+..|+. .|..+.. +.-..|..+++...+.++++.+|-...-|..+
T Consensus 245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 23455555555555544432 2221111 11234555666666666666666544444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.64 E-value=9.3e-08 Score=71.73 Aligned_cols=95 Identities=11% Similarity=0.010 Sum_probs=43.0
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc--------HhHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD--------VVVWR 384 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--------~~~~~ 384 (454)
.+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|++.+++.....|+ ..+|.
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 3444444555555555555555555443 1122344444445555555555555544444332111 12344
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 385 TLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
.+..++...|++++|++.|+++++.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4444444455555555555544443
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-08 Score=72.98 Aligned_cols=97 Identities=7% Similarity=-0.164 Sum_probs=78.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhc
Q 012879 349 HYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGV 427 (454)
Q Consensus 349 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (454)
.+..+...+.+.|++++|...|++.....| +...|..+..++...|++++|+..++++++..|.+...+..++.++.+.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 344566777888888888888888777634 6778888888888999999999999999999998888888899999999
Q ss_pred CCcCcHHHHHHHHhhccc
Q 012879 428 GRFGDAERLRRVMDERNA 445 (454)
Q Consensus 428 g~~~~a~~~~~~~~~~~~ 445 (454)
|++++|.+.+++..+.+.
T Consensus 99 g~~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHHC---
T ss_pred CCHHHHHHHHHHHHHhCc
Confidence 999999999988876543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=1.1e-07 Score=77.61 Aligned_cols=97 Identities=10% Similarity=-0.083 Sum_probs=71.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
..+..+..+|.+.|++++|+..+++.... +.+...+..+..+|...|++++|++.|+++++..|.+...+..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56677777888888888888888877665 33567888888899999999999999999999999888888889999988
Q ss_pred cCCcCcHH-HHHHHHhhcc
Q 012879 427 VGRFGDAE-RLRRVMDERN 444 (454)
Q Consensus 427 ~g~~~~a~-~~~~~~~~~~ 444 (454)
.|+.+++. ..+..+...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88888877 5566655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-05 Score=73.53 Aligned_cols=166 Identities=5% Similarity=-0.125 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChh----hHHhHHHHHHccCchhHHHHHHHhhhh----cCCCCchHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEI----TILAVLPAIWQNGDVKSCQLIHGYGEK----RGFTAFDIRV 245 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~ 245 (454)
+..++..|...|++++|.+.+.++....+..++.. +.+.+...+...|+.+.+..+++.... .+..+.-..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 45566677777777777777776654312222221 122222333455677777776666543 2223334567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc------CC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCc--HH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVE------RK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKPN--RV 312 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~--~~ 312 (454)
+..+...|...|++++|..+++++... .+ ...++..++..|...|++++|..++++.... +.+|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 778888888888888888888877554 11 2346777788888888888888888776541 11211 23
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
.+..+...+...|++++|...|.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455566677788888888887777755
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-07 Score=68.54 Aligned_cols=110 Identities=12% Similarity=0.020 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHH
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGAC 390 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~ 390 (454)
..+..+...+...|++++|...++..... .+.+...+..+..++...|++++|...+++.....| +...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34455555556666666666666666553 122455555666666666666666666665554422 455666666777
Q ss_pred HcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 391 SFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
...|++++|.+.++++++..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777766665555544443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=1.6e-07 Score=72.13 Aligned_cols=96 Identities=14% Similarity=0.042 Sum_probs=48.7
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHH
Q 012879 278 SWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDML 357 (454)
Q Consensus 278 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 357 (454)
.+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...|+..... . +.+...+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM-D-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-C-CCCcHHHHHHHHHH
Confidence 34444455555555555555555555432 123444455555555555555555555555543 1 22334444555555
Q ss_pred HhcCChHHHHHHHhcCCCC
Q 012879 358 GRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~ 376 (454)
...|++++|.+.|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555554433
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=9.3e-08 Score=78.14 Aligned_cols=140 Identities=11% Similarity=-0.038 Sum_probs=68.7
Q ss_pred HhcCCHHHHHHHHhhCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC--------------hhhHHhH
Q 012879 151 VKWGELEFARSLFEEMPC---RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS--------------EITILAV 213 (454)
Q Consensus 151 ~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~l 213 (454)
...|+++++.+.++.-.+ .....+..+...+...|++++|+..|++..+.....|+ ...+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp -------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 344455555554443222 12345566677777788888888888877763111111 1344455
Q ss_pred HHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCCh
Q 012879 214 LPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMG 292 (454)
Q Consensus 214 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 292 (454)
..++...|++++|...++.+.+. .|.+...+..+..+|...|++++|...|++.....| +...+..+..++...++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~ 172 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA 172 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555554 233455555555555555555555555555554433 333444444444443333
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.4e-07 Score=79.76 Aligned_cols=121 Identities=10% Similarity=-0.079 Sum_probs=63.5
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC---------------hhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS---------------EITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
...+..+...+.+.|++++|+..|++..+. . +.+ ...|..+..++.+.|++++|...++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSW-L-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-T-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-h-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456777777888888888888888888764 1 111 23444444444444444444444444444
Q ss_pred cCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHH
Q 012879 236 RGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 236 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A 295 (454)
. .|.+...+..+..+|...|++++|+..|+++.+..| +...+..+..++...|+.++|
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3 233444444444444444444444444444444433 333444444444444444444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-07 Score=71.80 Aligned_cols=102 Identities=10% Similarity=-0.097 Sum_probs=85.5
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHH
Q 012879 309 PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLL 387 (454)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 387 (454)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++.....| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 46677888888899999999999999998875 234577888888899999999999999988776633 567888888
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 388 GACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
.++...|++++|+..++++++..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 9999999999999999999998887
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.4e-06 Score=72.39 Aligned_cols=216 Identities=8% Similarity=-0.011 Sum_probs=150.6
Q ss_pred HHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCC----------hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcC--C
Q 012879 225 SCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGC----------IFSASKLFEDISVERK-NLVSWTSIISGFAMHG--M 291 (454)
Q Consensus 225 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~ 291 (454)
+|..+.+.+... .|.+..+|+.--.++...+. +++++.+++.+....| +..+|+.-.-.+...| .
T Consensus 48 eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 48 SVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 455555555554 34344444433333322222 6788999999888766 7888988887787877 4
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhc----------
Q 012879 292 GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGL-VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRA---------- 360 (454)
Q Consensus 292 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 360 (454)
+++++.+++++.+.... |...|+.-...+...|. ++++++.++.+.+. . +-|...|+.....+.+.
T Consensus 126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~ 202 (331)
T 3dss_A 126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQG 202 (331)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHHSCCC------
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHhhhcccccccc
Confidence 89999999999986533 66777666666667787 58999999999986 3 34666776665555554
Q ss_pred ----CChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcC-----------CChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 361 ----GRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFH-----------GNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 361 ----g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
+.++++++.+.+.... +-|...|+.+-..+.+. +.++++++.++++++..|++...+..++...
T Consensus 203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~ 282 (331)
T 3dss_A 203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM 282 (331)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHH
Confidence 4578888888887766 44677787666665554 4578999999999999998754444433322
Q ss_pred ---HhcCCcCcHHHHHHHHhhccc
Q 012879 425 ---AGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 425 ---~~~g~~~~a~~~~~~~~~~~~ 445 (454)
...|..+++...+.++.+.+.
T Consensus 283 ~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 283 RALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp HHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred HhhcccccHHHHHHHHHHHHHhCc
Confidence 245777788889999887654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=3.1e-07 Score=69.81 Aligned_cols=99 Identities=12% Similarity=-0.070 Sum_probs=56.8
Q ss_pred ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHH
Q 012879 275 NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLI 354 (454)
Q Consensus 275 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 354 (454)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++...+. . +.+...+..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL-D-GQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-C-chhHHHHHHHH
Confidence 44555556666666666666666666655542 223455555556666666666666666666553 1 22345555566
Q ss_pred HHHHhcCChHHHHHHHhcCCCC
Q 012879 355 DMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 355 ~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.+|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666655443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=80.95 Aligned_cols=118 Identities=7% Similarity=-0.151 Sum_probs=53.7
Q ss_pred cCCChHHHHHHHHHHHHhc---CCCC-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC------CC-cHhHHHHHHHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEEC---EVLP-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE------IT-DVVVWRTLLGACS 391 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~~~ 391 (454)
..|+.+++..+++...... +..+ -..++..+...|...|++++|..+++++... .+ ...++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 3455555555555443320 1111 1234444555555555555555555443211 11 1234555555555
Q ss_pred cCCChhHHHHHHHHHHHhhcCCC-------CcHHHHHHHHHhcCCcCcHHHHHHHH
Q 012879 392 FHGNVEMGERVTRKILEMERGYG-------GDYVLMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
..|++++|..++++++...+... ..+..++..+...|++++|...+.+.
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 55666666555555554443311 12233444444555555555554444
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=5.6e-07 Score=69.28 Aligned_cols=110 Identities=12% Similarity=-0.078 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRT 385 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~ 385 (454)
...+..+...+...|++++|...|+...+. .|+ ...+..+..+|...|++++|.+.+++.....| +...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL---DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 344445555555556666666655555532 333 34555555566666666666666665544422 4556666
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
+..++...|++++|...++++++..|.+...+..+..+
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 66777777777777777777777776665555544444
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.7e-06 Score=66.95 Aligned_cols=98 Identities=11% Similarity=0.007 Sum_probs=61.9
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
+...+..+...+.+.|++++|+..|++.....| +...|..+..+|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 455566666666666666666666666666544 55566666666666666666666666666543 2245556666666
Q ss_pred HhcCCChHHHHHHHHHHHHh
Q 012879 321 CSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~ 340 (454)
+...|++++|...|++..+.
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 66667777777666666654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.9e-07 Score=70.16 Aligned_cols=101 Identities=13% Similarity=-0.002 Sum_probs=91.4
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLM 420 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 420 (454)
.+...+..+...+...|++++|.+.|++.....|+ ...+..+..+|...|++++|+..++++++..|.+...+..+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 35677888889999999999999999998887666 67888899999999999999999999999999998899999
Q ss_pred HHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 421 YNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
+.++...|++++|...+++..+.+.
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999887654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-06 Score=62.06 Aligned_cols=96 Identities=7% Similarity=-0.084 Sum_probs=45.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|+++.|...+++..+. .|.+...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 81 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 3444455555555555555555555542 2223444444444444444444444444444443 22234444444444
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 012879 253 YAKCGCIFSASKLFEDISVE 272 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~ 272 (454)
+...|++++|.+.|++....
T Consensus 82 ~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhHHHHHHHHHHHHHc
Confidence 44444444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.5e-06 Score=63.84 Aligned_cols=91 Identities=12% Similarity=0.040 Sum_probs=41.4
Q ss_pred hHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC--------hhhHHHHH
Q 012879 212 AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN--------LVSWTSII 283 (454)
Q Consensus 212 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--------~~~~~~l~ 283 (454)
.+...+.+.|++++|...|+++.+. .|.+...+..+..+|...|++++|++.|++..+..|+ ..+|..+.
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 3334444444444444444444443 2334444455555555555555555555444433111 11344444
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 012879 284 SGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~ 304 (454)
.++...|++++|++.|++..+
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 455555555555555555444
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.6e-06 Score=62.90 Aligned_cols=95 Identities=7% Similarity=-0.068 Sum_probs=47.2
Q ss_pred hHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC---hhhHHHHHHH
Q 012879 209 TILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN---LVSWTSIISG 285 (454)
Q Consensus 209 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~l~~~ 285 (454)
.+..+...+...|++++|...++++.+. .|.+...+..+..++...|++++|...|++..+..|+ ...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 3344444444444444444444444443 2334445555555555555555555555555544332 4445555555
Q ss_pred HHhc-CChhHHHHHHHHHHhC
Q 012879 286 FAMH-GMGKEAVENFGRMQKV 305 (454)
Q Consensus 286 ~~~~-g~~~~A~~~~~~m~~~ 305 (454)
+... |++++|.+.+++..+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 5555 5555555555555543
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.50 E-value=1.5e-06 Score=65.12 Aligned_cols=100 Identities=12% Similarity=0.118 Sum_probs=49.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch-------HHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD-------IRV 245 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~ 245 (454)
.+..+...+...|++++|...|++..+. .+.+...+..+...+...|+++.|...++.+.+.. |.+ ..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~ 81 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG--RENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc--cccchhHHHHHHH
Confidence 3444555555566666666666655552 23334444555555555555555555555544431 111 344
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcCCCh
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVERKNL 276 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 276 (454)
+..+..++...|++++|.+.|++.....|+.
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 112 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCH
Confidence 4445555555555555555555554444443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.49 E-value=1.2e-05 Score=76.74 Aligned_cols=173 Identities=8% Similarity=-0.042 Sum_probs=140.0
Q ss_pred CChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC----------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC
Q 012879 257 GCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM----------GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG 325 (454)
Q Consensus 257 g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 325 (454)
...++|++.++++....| +..+|+.--.++...|+ ++++++.++++.+...+ +..+|..-...+.+.+
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345678999999988877 55678777777766666 89999999999886544 6677777777777888
Q ss_pred --ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcC--------
Q 012879 326 --LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG-RLEQAEKTALGIPSE-ITDVVVWRTLLGACSFH-------- 393 (454)
Q Consensus 326 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~-------- 393 (454)
+++++.+.++.+.+. . +-+...|+.-...+.+.| .++++++.++++.+. +-+...|+.....+.+.
T Consensus 122 ~~~~~~el~~~~k~l~~-d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEA-D-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhh-c-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 669999999999986 2 346777877777788888 899999999999988 44677888777766552
Q ss_pred ------CChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCc
Q 012879 394 ------GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGD 432 (454)
Q Consensus 394 ------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (454)
+.++++++.+++++...|.+..+|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999888666
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.9e-07 Score=68.37 Aligned_cols=111 Identities=9% Similarity=-0.076 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC----c----HhHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT----D----VVVWR 384 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p----~----~~~~~ 384 (454)
.+..+...+...|++++|...++...+. .+.+...+..+..+|...|++++|...++++....| + ..++.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3444555555556666666666665543 122344555555566666666666666655544311 1 55667
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 385 TLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 385 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.+..++...|++++|.+.++++++..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777778888888888888888887766 44444445444433
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-07 Score=85.78 Aligned_cols=119 Identities=11% Similarity=-0.021 Sum_probs=97.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCCh
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNV 396 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 396 (454)
...+.+.|++++|.+.+++..+. .+.+...+..+..+|.+.|++++|++.+++..+..| +...+..+..+|...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34566788999999999998875 233477888899999999999999999998877734 577889999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCCcHHHHHHH--HHhcCCcCcHHHHHH
Q 012879 397 EMGERVTRKILEMERGYGGDYVLMYNI--LAGVGRFGDAERLRR 438 (454)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 438 (454)
++|++.++++++..|.+...+..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999988888888887 888999999999988
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=1.8e-06 Score=64.02 Aligned_cols=93 Identities=11% Similarity=-0.087 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHH
Q 012879 175 TGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYA 254 (454)
Q Consensus 175 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 254 (454)
..+...+.+.|++++|+..|++..+. .+.+...+..+..++...|++++|...+++..+. .|.+...+..+..+|.
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence 33444455555555555555555542 2223344444444444444444444444444443 2333444444444444
Q ss_pred hcCChhHHHHHHHHhhh
Q 012879 255 KCGCIFSASKLFEDISV 271 (454)
Q Consensus 255 ~~g~~~~a~~~~~~~~~ 271 (454)
..|++++|...|++..+
T Consensus 97 ~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 97 NEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 44444444444444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.45 E-value=8.1e-07 Score=82.73 Aligned_cols=94 Identities=10% Similarity=-0.042 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
...|..+..+|.+.|++++|+..++++... +.+...|..+..+|...|++++|+..|+++++..|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 466777788888888888888888877766 3356778888888888888888888888888888888888888888888
Q ss_pred hcCCcCcHHH-HHHHH
Q 012879 426 GVGRFGDAER-LRRVM 440 (454)
Q Consensus 426 ~~g~~~~a~~-~~~~~ 440 (454)
+.|+++++.+ .++.|
T Consensus 397 ~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 397 KAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888877664 34444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=3.1e-07 Score=68.97 Aligned_cols=102 Identities=12% Similarity=0.019 Sum_probs=77.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh---hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc----HhHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI---KHYGCLIDMLGRAGRLEQAEKTALGIPSEITD----VVVWRTLL 387 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~----~~~~~~l~ 387 (454)
..+...+...|++++|...|+.+.+... .+. ..+..+..++...|++++|...|+++....|+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 3455667788999999999998887521 222 46777888888899999999888887665443 56677788
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
.++...|++++|+..++++++..|.++....
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 8888899999999999999888776654433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.43 E-value=3.1e-07 Score=70.28 Aligned_cols=106 Identities=18% Similarity=0.085 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC-----C-----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-----
Q 012879 312 VTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP-----D-----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE----- 376 (454)
Q Consensus 312 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 376 (454)
..+......+.+.|++++|+..|+...+...-.| + ...|..+..++.+.|++++|+..+++....
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 3455566667778888888888888876522111 1 114555555555555555555555444433
Q ss_pred --CCc-HhHH----HHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 377 --ITD-VVVW----RTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 377 --~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
.|+ ...| .....++...|++++|+..|+++++..|.+....
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~ 139 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGET 139 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCC
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 342 2344 4555555555555555555555555555544443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.41 E-value=4.9e-07 Score=80.54 Aligned_cols=151 Identities=7% Similarity=-0.116 Sum_probs=73.7
Q ss_pred hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 276 LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 276 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
...+..+...+.+.|++++|+..|++..+. .|+... +...|+.+++...+ ....|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l-----------~~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV-----------KNPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH-----------HTHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH-----------HHHHHHHHHH
Confidence 345666666777778888888888877664 344331 12223333322111 1125667777
Q ss_pred HHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH-HHhcCCcCcH
Q 012879 356 MLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI-LAGVGRFGDA 433 (454)
Q Consensus 356 ~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 433 (454)
+|.+.|++++|+..+++.....| +...|..+..+|...|++++|+..|+++++..|.+...+..+..+ ....+..+.+
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 78888888888888877766533 567777788888888888888888888888888777777777666 3345666777
Q ss_pred HHHHHHHhhcccc
Q 012879 434 ERLRRVMDERNAF 446 (454)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (454)
...+++|......
T Consensus 319 ~~~~~~~l~~~p~ 331 (338)
T 2if4_A 319 KEMYKGIFKGKDE 331 (338)
T ss_dssp -------------
T ss_pred HHHHHHhhCCCCC
Confidence 7777777665443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.40 E-value=8.3e-07 Score=69.37 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC------CCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
.++..+...+...|++++|.+.++++++..+.. ...+..++.++...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345555566666666666666666666553321 22455566666666777777666666554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-05 Score=59.63 Aligned_cols=98 Identities=8% Similarity=-0.051 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCCh---hhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCch---HHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSE---ITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFD---IRVLN 247 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ 247 (454)
+..+...+...|++++|...|++..+. .+.+. ..+..+..++...|++++|...++.+.+. .|.+ +..+.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHH
Confidence 344556666777777777777776653 12222 35555566666666666666666666654 2323 45555
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 248 CLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 248 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
.+..++...|++++|...|+++....|+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 6666666666666666666666555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.36 E-value=1.5e-07 Score=69.38 Aligned_cols=93 Identities=14% Similarity=0.056 Sum_probs=68.1
Q ss_pred cCCChHHHHHHHHHHHHhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHH
Q 012879 323 HGGLVEEGLNFFDKMVEECE--VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 399 (454)
..|++++|+..|++..+. + -+.+...+..+..+|...|++++|++.|++.....| +..++..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHH
Confidence 357888888888888763 2 123456777888888888888888888888776634 567778888888888888888
Q ss_pred HHHHHHHHHhhcCCCCc
Q 012879 400 ERVTRKILEMERGYGGD 416 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~ 416 (454)
++.++++++..|.++..
T Consensus 81 ~~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 81 VELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHhCCCcHHH
Confidence 88888888888876544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-07 Score=67.99 Aligned_cols=86 Identities=20% Similarity=0.156 Sum_probs=49.9
Q ss_pred cCChhHHHHHHHHHHhCCC--CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 289 HGMGKEAVENFGRMQKVGL--KPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.|++++|+..|++..+.+. +.+...+..+..++...|++++|...|++..+. .+.+...+..+..++...|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHHH
Confidence 4566667777776666431 223345556666666677777777777766654 122355666666666677777777
Q ss_pred HHHHhcCCCC
Q 012879 367 EKTALGIPSE 376 (454)
Q Consensus 367 ~~~~~~~~~~ 376 (454)
.+.+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 7766665544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.34 E-value=9.3e-07 Score=69.44 Aligned_cols=81 Identities=15% Similarity=0.017 Sum_probs=63.5
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC-CcHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-GDYVLMYNI 423 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~ 423 (454)
+...|..+..+|.+.|++++|+..+++.... +.+...|..+..+|...|++++|+..|+++++..|.+. .....+..+
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467778888888999999999988887766 34577888899999999999999999999999998876 444444444
Q ss_pred HHh
Q 012879 424 LAG 426 (454)
Q Consensus 424 ~~~ 426 (454)
..+
T Consensus 142 ~~~ 144 (162)
T 3rkv_A 142 TER 144 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=67.54 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcC---CCh----hhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-c
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVER---KNL----VSWTSIISGFAMHGMGKEAVENFGRMQKV----GLKP-N 310 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~ 310 (454)
..++..+...+...|++++|...+++..... ++. .++..+...+...|++++|...+++..+. +..+ .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4456667777777777777777777665531 111 24455555556666666666666554431 1000 0
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHH
Q 012879 311 RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGAC 390 (454)
Q Consensus 311 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~ 390 (454)
...+..+...+...|++++|...+++..+...-..+. .....++..+...+
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----------------------------~~~~~~~~~la~~~ 139 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR-----------------------------IGEGRACWSLGNAY 139 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-----------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch-----------------------------HhHHHHHHHHHHHH
Confidence 2233344444445555555555554443320000000 01133556666777
Q ss_pred HcCCChhHHHHHHHHHHHhhc
Q 012879 391 SFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 391 ~~~g~~~~A~~~~~~~~~~~~ 411 (454)
...|++++|.+.++++++...
T Consensus 140 ~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 140 TALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHTCHHHHHHHHHHHHHHHT
T ss_pred HHccCHHHHHHHHHHHHHHHH
Confidence 777777777777777766543
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-05 Score=75.40 Aligned_cols=117 Identities=12% Similarity=0.022 Sum_probs=56.3
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEG 330 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 330 (454)
.+.+.|++++|.+.|++..+..| +...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 34445555555555555555444 34455555555555555555555555555542 12344555555555555666666
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHH--HHhcCChHHHHHHHh
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDM--LGRAGRLEQAEKTAL 371 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 371 (454)
.+.|+++.+... .+...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p--~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKP--HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHST--TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCC--CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666655554311 122233333333 555566666666655
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.6e-06 Score=78.17 Aligned_cols=91 Identities=7% Similarity=-0.108 Sum_probs=79.4
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
+...|..+..+|.+.|++++|++.++++....| +...|..+..+|...|++++|++.++++++..|.+...+..+..++
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 356788889999999999999999999888744 5788999999999999999999999999999999888888999999
Q ss_pred HhcCCcCcHHHH
Q 012879 425 AGVGRFGDAERL 436 (454)
Q Consensus 425 ~~~g~~~~a~~~ 436 (454)
...++.+++.+.
T Consensus 352 ~~~~~~~~a~k~ 363 (370)
T 1ihg_A 352 QKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 888887776543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.9e-07 Score=67.92 Aligned_cols=95 Identities=9% Similarity=-0.089 Sum_probs=73.8
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCC------CCcHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGY------GGDYV 418 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~ 418 (454)
+...+..+...+...|++++|.+.|++..... .+...+..+..++...|++++|++.++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 44566677777788888888888887776653 356778888888889999999999999999888887 56677
Q ss_pred HHHHHHHhcCCcCcHHHHHHHH
Q 012879 419 LMYNILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~ 440 (454)
.++.++...|+++.|.+.++++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHhHhhhHhHHHHh
Confidence 7888888888888887666544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.8e-06 Score=73.58 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=89.2
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNAC 321 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 321 (454)
....+..+...+.+.|++++|...|++.....|+... +...|+.+++...+. ...|..+..++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 5567888899999999999999999998886665432 222333344333221 13677788889
Q ss_pred hcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-HhHHHHHHHH-HHcCCChhHH
Q 012879 322 SHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-VVVWRTLLGA-CSFHGNVEMG 399 (454)
Q Consensus 322 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~l~~~-~~~~g~~~~A 399 (454)
.+.|++++|+..++...+. .+.+...+..+..+|...|++++|...|+++....|+ ...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999875 2346788889999999999999999999999887554 4455555554 2345677888
Q ss_pred HHHHHHHHHhhcCCC
Q 012879 400 ERVTRKILEMERGYG 414 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~ 414 (454)
...|+++....|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999999998887754
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=5.9e-06 Score=63.20 Aligned_cols=98 Identities=14% Similarity=-0.036 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCc-------------HhHHHHHHHHHHcCCChhHHHHHHHHHHHh----
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEITD-------------VVVWRTLLGACSFHGNVEMGERVTRKILEM---- 409 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 409 (454)
...+......+.+.|++++|++.|++.....|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345566777788899999999999887766333 228888889999999999999999999999
Q ss_pred ---hcCCCCcH----HHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 410 ---ERGYGGDY----VLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 410 ---~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
+|++...| ...+.++...|++++|+..|++..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 88888888 899999999999999999999887753
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.7e-05 Score=73.74 Aligned_cols=121 Identities=11% Similarity=-0.091 Sum_probs=62.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC-------------hhhHHhHHHHHHccCchhHHHHHHHhhhhcC
Q 012879 171 VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS-------------EITILAVLPAIWQNGDVKSCQLIHGYGEKRG 237 (454)
Q Consensus 171 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 237 (454)
...+..+...+.+.|++++|+..|++..+.....++ ...|..+..++.+.|+++.|...++++.+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 346777888899999999999999998874111111 234444444444444444444444444443
Q ss_pred CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChh
Q 012879 238 FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGK 293 (454)
Q Consensus 238 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 293 (454)
.|.+...+..+..+|...|++++|+..|+++.+..| +...+..+..++.+.++.+
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~ 402 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHN 402 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHH
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 233444444444444444444444444444444433 2233444444444444333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=62.25 Aligned_cols=109 Identities=12% Similarity=0.040 Sum_probs=61.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcc-----CCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHH
Q 012879 172 VSWTGIIDGYTRMNRSNEALALFRKMVACE-----YTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVL 246 (454)
Q Consensus 172 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 246 (454)
..+......+.+.|++++|+..|.+..... ...|+...+ .. ..|.+..++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~-----~~~~~~~~~ 66 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE-----LDRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH-----HHHTHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH-----HHHHHHHHH
Confidence 345667777888888888888888776530 001111000 00 012244555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 247 NCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 247 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
..+..+|.+.|++++|+..+++.....| +...|..+..+|...|++++|...|++..+.
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 5566666666666666666666555544 4455555666666666666666666665553
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=2.4e-05 Score=72.77 Aligned_cols=136 Identities=5% Similarity=-0.123 Sum_probs=99.2
Q ss_pred HHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCC-hhhHHHHHHHHhccCCcchHhHHHHHHHHc-----CC-CCC-ch
Q 012879 39 HFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFD-SFTYSFLIRTCATLSHPNLGTQLHAVISKV-----GF-QSH-VY 110 (454)
Q Consensus 39 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~ 110 (454)
..+..+|++++|+.++++...+.+.-.. |.+++ ..+++.|..+|...|++++|..++++.++. |. .|+ ..
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~ 394 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFA--DTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGM 394 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3466889999999999998866555444 43333 378999999999999999999999987752 21 122 35
Q ss_pred hHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCc----chHHHHHHHHHhcCC
Q 012879 111 VNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNV----VSWTGIIDGYTRMNR 186 (454)
Q Consensus 111 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 186 (454)
+++.|...|...|++++|+.+++ +|+++++....++. .+.+.+..++...+.
T Consensus 395 ~l~nLa~~~~~~G~~~eA~~~~~------------------------~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 395 AVMRAGLTNWHAGHIEVGHGMIC------------------------KAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH------------------------HHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH------------------------HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999988775 45666666554432 234556667777788
Q ss_pred hHHHHHHHHHHHHc
Q 012879 187 SNEALALFRKMVAC 200 (454)
Q Consensus 187 ~~~a~~~~~~~~~~ 200 (454)
+++|..+|..+++.
T Consensus 451 ~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 451 FRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.9e-06 Score=78.05 Aligned_cols=124 Identities=14% Similarity=0.059 Sum_probs=76.1
Q ss_pred HhcCCChHHHHHHHHHHHHhcC--CC---C-ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------CCc-HhHHHH
Q 012879 321 CSHGGLVEEGLNFFDKMVEECE--VL---P-DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE--------ITD-VVVWRT 385 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~ 385 (454)
+...|++++|..++++..+... +. | ...+++.|..+|...|++++|+.++++.... .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3456667777666666554311 11 1 2345666667777777777776666554332 333 356777
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHh-----hcCCCC---cHHHHHHHHHhcCCcCcHHHHHHHHhhcc
Q 012879 386 LLGACSFHGNVEMGERVTRKILEM-----ERGYGG---DYVLMYNILAGVGRFGDAERLRRVMDERN 444 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (454)
|...|...|++++|+.+++++++. |++++. ....+..++...|++++|+.++.++++.-
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777777653 344332 23456666677777777887777777644
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.07 E-value=5e-05 Score=68.33 Aligned_cols=63 Identities=10% Similarity=-0.058 Sum_probs=33.4
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
+..++..+..+|.+.|++++|++.+++..+..| +...+..+..+|...|++++|+..|++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 344555555555555555555555555555433 344455555555555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.07 E-value=7.6e-06 Score=56.74 Aligned_cols=82 Identities=15% Similarity=0.082 Sum_probs=62.7
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHH
Q 012879 347 IKHYGCLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILA 425 (454)
Q Consensus 347 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (454)
...+..+...+...|++++|...+++..... .+...+..+..++...|++++|+..++++++..|.+...+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4456666777777788888877777765552 356677788888888899999999999999888888878888887776
Q ss_pred hcC
Q 012879 426 GVG 428 (454)
Q Consensus 426 ~~g 428 (454)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.03 E-value=6.9e-06 Score=59.44 Aligned_cols=98 Identities=14% Similarity=0.014 Sum_probs=75.0
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
++...|..+...+.+.|++++|++.|++.. ...+. +...+..+..++...|++++|...++..++.. +.+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~ 71 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLI---TAQPQ------NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STA 71 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SST
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCc
Confidence 456778888889999999999999999988 55554 77888888999999999999999999988754 222
Q ss_pred ------chhHHHHHHHHHhCCChhHHHHHHhhCC
Q 012879 109 ------VYVNTALVNMYVSLGFLKDSSKLFDEMP 136 (454)
Q Consensus 109 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 136 (454)
...+..+..++...|+.+.|...++++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 105 (111)
T 2l6j_A 72 EHVAIRSKLQYRLELAQGAVGSVQIPVVEVDELP 105 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSCS
T ss_pred cHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHhH
Confidence 4455666667777777777666665543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.03 E-value=5.2e-06 Score=60.76 Aligned_cols=83 Identities=10% Similarity=-0.034 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 329 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
.|...|+...+. .+.+...+..+...|...|++++|+..|++.....| +...|..+..+|...|++++|...+++++
T Consensus 3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567777777753 234577788888889999999999999988776633 56788888888999999999999999998
Q ss_pred HhhcCC
Q 012879 408 EMERGY 413 (454)
Q Consensus 408 ~~~~~~ 413 (454)
+..|..
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 887763
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.02 E-value=1.5e-05 Score=56.61 Aligned_cols=67 Identities=10% Similarity=-0.114 Sum_probs=39.7
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcC
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 412 (454)
+...+..+..+|...|++++|++.|++.....| +...|..+..+|...|++++|++.++++++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 345555566666666666666666666555422 3445666666666666666666666666665544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-07 Score=81.10 Aligned_cols=241 Identities=10% Similarity=0.038 Sum_probs=171.4
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
..+.+|..|..+....+...+|++.|-+.. |...|..++.++.+.|++++-.+++...++.. .+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--------------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke 115 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------------DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RE 115 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS--------------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CS
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhCC--------------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cc
Confidence 456788899999999999998888775553 66778899999999999999999988777653 34
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCC--------------------
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPC-------------------- 168 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~-------------------- 168 (454)
+.+=+.|+-+|++.+++.+-.+++. .|+......+..-|...|.++.|.-+|..+..
T Consensus 116 ~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 116 SYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp TTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred cccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 4555678999999998765443322 37777777788888888888888888877641
Q ss_pred ----CCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHH
Q 012879 169 ----RNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIR 244 (454)
Q Consensus 169 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 244 (454)
.++.||..+-.+|...+++.-|.-.--.++-. | .....++..|...|.+++.+.+++..... ......
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh----a--deL~elv~~YE~~G~f~ELIsLlEaglgl--ErAHmG 264 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH----A--DELEELINYYQDRGYFEELITMLEAALGL--ERAHMG 264 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC----S--SCCSGGGSSSSTTCCCTTSTTTHHHHTTS--TTCCHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc----H--HHHHHHHHHHHhCCCHHHHHHHHHHHhCC--CchhHH
Confidence 47789999999999998888776554444322 2 22345666777888888888888877643 444778
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhc--CC-------ChhhHHHHHHHHHhcCChhHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVE--RK-------NLVSWTSIISGFAMHGMGKEAVE 297 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-------~~~~~~~l~~~~~~~g~~~~A~~ 297 (454)
+|+.|.-.|++- +.++..+.++-.-.. -| ....|.-++-.|.+-.+++.|..
T Consensus 265 mFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 265 MFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 888888888765 445555544433222 12 33457777777777777776643
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00092 Score=63.68 Aligned_cols=172 Identities=9% Similarity=-0.053 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc----------hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD----------VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
.++|++.++++... .+-+...|+.--..+...|+ ++++.+.++.+.+. .|.+..+|..-..++.+.
T Consensus 45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 45667777777763 23334555555555555555 67777777777776 455777777777777777
Q ss_pred C--ChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcC--------
Q 012879 257 G--CIFSASKLFEDISVERK-NLVSWTSIISGFAMHG-MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHG-------- 324 (454)
Q Consensus 257 g--~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-------- 324 (454)
| +++++++.++++.+..| +..+|+.-.-.+.+.| .++++++.++++.+..+. |...|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 7 56888888888877755 6677777777777777 777888888777776433 555555544444331
Q ss_pred ------CChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 325 ------GLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 325 ------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
+.++++.+.++.+... .+-+...|..+-..+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 4578888999888864 23356777777777777777444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00042 Score=52.35 Aligned_cols=111 Identities=11% Similarity=-0.033 Sum_probs=70.4
Q ss_pred CChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh----cCChh
Q 012879 185 NRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK----CGCIF 260 (454)
Q Consensus 185 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 260 (454)
+++++|+.+|++..+. + .|+.. +...|...+.+++|.+.|++..+.| ++..+..|...|.. .++++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~ 78 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLR 78 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHH
Confidence 3566777777777665 3 23222 5555555566666777777776654 55666666666666 66777
Q ss_pred HHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 012879 261 SASKLFEDISVERKNLVSWTSIISGFAM----HGMGKEAVENFGRMQKVG 306 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 306 (454)
+|.+.|++..+. .++..+..|...|.. .++.++|...|++..+.|
T Consensus 79 ~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 79 KAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 777777776653 455566666666666 566777777777666655
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00018 Score=52.30 Aligned_cols=79 Identities=9% Similarity=-0.092 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 189 EALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+|+..|++..+ ..+.+...+..+...+...|++++|...+++..+. .|.+...+..+..+|...|++++|...|++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34555555554 22334455555555666666666666666666554 333555566666666666666666666665
Q ss_pred hhh
Q 012879 269 ISV 271 (454)
Q Consensus 269 ~~~ 271 (454)
...
T Consensus 79 al~ 81 (115)
T 2kat_A 79 GLA 81 (115)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.76 E-value=4.1e-05 Score=54.24 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=42.8
Q ss_pred cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh
Q 012879 379 DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE 442 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (454)
+...+..+...|...|++++|+..|+++++..|.++..|..++.++...|++++|.+.+++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4455666666666667777777777777666666666666666667667777666666666554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=9.4e-05 Score=56.43 Aligned_cols=96 Identities=6% Similarity=-0.031 Sum_probs=60.5
Q ss_pred hcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCch----------hHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 183 RMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDV----------KSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 183 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
+.+++++|+..+++..+. .+.+...|..+..++...+++ ++|+..|++..+. .|....+|..+..+
T Consensus 14 r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~a 89 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHHH
Confidence 445667777777777663 344566666666666666553 4677777777765 45566677777777
Q ss_pred HHhcC-----------ChhHHHHHHHHhhhcCCChhhHHHH
Q 012879 253 YAKCG-----------CIFSASKLFEDISVERKNLVSWTSI 282 (454)
Q Consensus 253 ~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~l 282 (454)
|...| ++++|++.|++..+..|+...|...
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 76653 6677777777766666655444333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.74 E-value=0.0005 Score=51.90 Aligned_cols=111 Identities=11% Similarity=-0.071 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQA 366 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 366 (454)
++++|.+.|++..+.|. |... +...|...+..++|.++|+...+. + +...+..|...|.. .+++++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 56677777777776652 2222 455555666667777777777664 2 45556666666666 6677777
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhc
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMER 411 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 411 (454)
.++|++..+. .++..+..|...|.. .++.++|++.++++.+.+.
T Consensus 81 ~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 7777766554 455566666666666 6777777777777776543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00022 Score=49.00 Aligned_cols=84 Identities=8% Similarity=0.009 Sum_probs=65.1
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.+...|..+...+.+.|++++|+..|++.. ...+. +...+..+..++...|++++|...+++..+.. +.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~---~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~ 76 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKAL---ELDPN------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNN 76 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHH---hcCCC------CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 356678888888999999999999999887 55544 67788888888999999999999999888765 345
Q ss_pred chhHHHHHHHHHhC
Q 012879 109 VYVNTALVNMYVSL 122 (454)
Q Consensus 109 ~~~~~~l~~~~~~~ 122 (454)
...+..+..++...
T Consensus 77 ~~~~~~l~~~~~~~ 90 (91)
T 1na3_A 77 AEAKQNLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 56666666665543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00017 Score=50.04 Aligned_cols=68 Identities=12% Similarity=-0.024 Sum_probs=43.3
Q ss_pred cHhHHHHHHHHHHcCCC---hhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 379 DVVVWRTLLGACSFHGN---VEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 379 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
++..+..+..++...++ .++|..+++++++.+|.++.....++..+.+.|++++|+..++++.+.+..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45555555555543333 566777777777777766666666777777777777777777776665544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0002 Score=54.66 Aligned_cols=98 Identities=12% Similarity=-0.009 Sum_probs=71.2
Q ss_pred HccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCCh----------hHHHHHHHHhhhcCC-ChhhHHHHHHHH
Q 012879 218 WQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCI----------FSASKLFEDISVERK-NLVSWTSIISGF 286 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~-~~~~~~~l~~~~ 286 (454)
.+.+.+++|.+.++...+. .|.+...+..+..++...+++ ++|+..|++..+..| +..+|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3456678888888888887 566888888888888887765 488888888888766 556788888888
Q ss_pred HhcC-----------ChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 012879 287 AMHG-----------MGKEAVENFGRMQKVGLKPNRVTFLSVLN 319 (454)
Q Consensus 287 ~~~g-----------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 319 (454)
...| ++++|++.|++..+. .|+...|...+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 7664 677777777777664 455554444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.3e-05 Score=53.88 Aligned_cols=65 Identities=12% Similarity=0.008 Sum_probs=45.5
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCC-cHh-HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEIT-DVV-VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
....+.+.|++++|.+.++++....| +.. .+..+..+|...|++++|++.|+++++..|.+...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34456667777777777777665533 445 677777777778888888888888888777766555
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.012 Score=51.65 Aligned_cols=141 Identities=10% Similarity=-0.020 Sum_probs=72.9
Q ss_pred CCcchHHHHHHHHH--hcCC---hHHHHHHHHHHHHccCCCCC-hhhHHhHHHHHHc---cC-----chhHHHHHHHhhh
Q 012879 169 RNVVSWTGIIDGYT--RMNR---SNEALALFRKMVACEYTEPS-EITILAVLPAIWQ---NG-----DVKSCQLIHGYGE 234 (454)
Q Consensus 169 ~~~~~~~~l~~~~~--~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~~-----~~~~a~~~~~~~~ 234 (454)
.+...|...+++.. ..++ ..+|..+|++..+. .|+ ...+..+.-++.. .+ ........++...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 46677777776543 3333 46788888888874 344 3445444444321 00 0011111111111
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH
Q 012879 235 KRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTF 314 (454)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 314 (454)
.....|.++.++..+...+...|++++|...++++....|+...|..+...+.-.|++++|.+.+++.... .|...||
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 11223445555655555555556666666666666665555555555555556666666666666665553 3444444
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=66.02 Aligned_cols=349 Identities=10% Similarity=0.044 Sum_probs=217.1
Q ss_pred hhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCC
Q 012879 29 HHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSH 108 (454)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 108 (454)
.|+..|..++.+..+.|.+++-+..+...+ +. .+ +...=+.|+-+|++.++..+-.+.+. .||
T Consensus 81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaR---k~-~k------e~~IDteLi~ayAk~~rL~elEefl~-------~~N 143 (624)
T 3lvg_A 81 DDPSSYMEVVQAANTSGNWEELVKYLQMAR---KK-AR------ESYVETELIFALAKTNRLAELEEFIN-------GPN 143 (624)
T ss_dssp SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS---TT-CC------STTTTHHHHHHHHTSCSSSTTTSTTS-------CCS
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHH---HH-hc------ccccHHHHHHHHHhhCcHHHHHHHHc-------CCC
Confidence 678899999999999999999999988875 33 33 55566789999999998877666542 477
Q ss_pred chhHHHHHHHHHhCCChhHHHHHHhhCCC------------------------CCchhHHHHHHHHHhcCCHHHHHHHHh
Q 012879 109 VYVNTALVNMYVSLGFLKDSSKLFDEMPE------------------------RNLVTWNVMITGLVKWGELEFARSLFE 164 (454)
Q Consensus 109 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~~~~ll~~~~~~~~~~~A~~~~~ 164 (454)
..-...+.+-|...|.++.|.-+|..+.. .++.||-.+-.+|...+.+.-|.-.--
T Consensus 144 ~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGL 223 (624)
T 3lvg_A 144 NAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGL 223 (624)
T ss_dssp SSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHH
T ss_pred cccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcc
Confidence 77777888999999999999999888752 477899999999999998876643321
Q ss_pred h-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc--
Q 012879 165 E-MPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF-- 241 (454)
Q Consensus 165 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 241 (454)
. +..++ -...++..|-..|.+++-+.+++.... .-......|+.|.-.|++- ++++..+.++....+-..|.
T Consensus 224 niIvhad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvi 298 (624)
T 3lvg_A 224 HIVVHAD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVL 298 (624)
T ss_dssp HHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTH
T ss_pred hhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHH
Confidence 1 22222 122356678889999999999998874 3456677788887777665 45555555554433211221
Q ss_pred ----hHHHHHHHHHHHHhcCChhHHHHHH-------------HHhhhcCCChhhHHHHHHHHHh---------------c
Q 012879 242 ----DIRVLNCLIDTYAKCGCIFSASKLF-------------EDISVERKNLVSWTSIISGFAM---------------H 289 (454)
Q Consensus 242 ----~~~~~~~l~~~~~~~g~~~~a~~~~-------------~~~~~~~~~~~~~~~l~~~~~~---------------~ 289 (454)
....|..++..|..-..++.|.... .++...-.|...|-..|..|.. .
T Consensus 299 racE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~P~lL~DLL~vL~pr 378 (624)
T 3lvg_A 299 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPR 378 (624)
T ss_dssp HHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSCCTTSHHHHHHHCTT
T ss_pred HHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhChHHHHHHHHhcccc
Confidence 3446788888888888888665432 1222212355555444444443 2
Q ss_pred CChhHHHHHHHHHHhC--------CC-CCcHHHH-HHHHHHHhcCCChHHH------------HHHHHHHHHhcCCCCCh
Q 012879 290 GMGKEAVENFGRMQKV--------GL-KPNRVTF-LSVLNACSHGGLVEEG------------LNFFDKMVEECEVLPDI 347 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~--------~~-~p~~~~~-~~l~~~~~~~~~~~~a------------~~~~~~~~~~~~~~~~~ 347 (454)
=+...+.++|++.-.. .+ .-|.... .++-..|....|++.- ..+-+++.+. +-.
T Consensus 379 lDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH----eL~ 454 (624)
T 3lvg_A 379 LDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH----ELI 454 (624)
T ss_dssp CCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC----SSH
T ss_pred CChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC----chH
Confidence 3444445444432110 00 1122222 2333445555554432 2233333321 223
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEME 410 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 410 (454)
..-..-...|.+.++++++..+.++=. .|.-.|...+.+|+.+-|.++++-.++.+
T Consensus 455 eFRrIAA~LYkkn~rw~qsi~l~KkDk-------lykDAietAa~S~~~elaeeLL~yFv~~g 510 (624)
T 3lvg_A 455 EFRRIAAYLFKGNNRWKQSVELCKKDS-------LYKDAMQYASESKDTELAEELLQWFLQEE 510 (624)
T ss_dssp HHHHHHHHHHHTTCHHHHHSSCSSTTC-------CTTGGGTTTTTCCCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhcc-------cHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 333444566778888888877654321 23334555566777777777777776643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0071 Score=53.12 Aligned_cols=135 Identities=5% Similarity=-0.052 Sum_probs=71.3
Q ss_pred CCCCChhhHHhHHHHHH--ccC---chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc---C-C----hhHHHHHHHH
Q 012879 202 YTEPSEITILAVLPAIW--QNG---DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC---G-C----IFSASKLFED 268 (454)
Q Consensus 202 ~~~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~----~~~a~~~~~~ 268 (454)
..+.+...|...+++.. ..+ +..+|..+|+++.+. .|.....+..+..+|.-. + . .......+..
T Consensus 189 ~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 189 ILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp HSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 34566667776666543 222 346788888888876 565566666555554310 0 0 0000111111
Q ss_pred ---hhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 269 ---ISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 269 ---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+.....+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11112355555555555555566666666666666553 45555555555555666666666666666543
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.054 Score=51.72 Aligned_cols=116 Identities=9% Similarity=-0.004 Sum_probs=73.8
Q ss_pred CChhHHHHHHHHHHhCC-CCCcHH--HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 290 GMGKEAVENFGRMQKVG-LKPNRV--TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 290 g~~~~A~~~~~~m~~~~-~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.+.+.|...+....+.. ..+... ....+.......+...++...+...... .++.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 37899999998886533 322222 2223333444555356677777765443 23433444455555678999999
Q ss_pred HHHHhcCCCCCCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 367 EKTALGIPSEITD-VVVWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 367 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
...|+.|.....+ ..-.-=+..++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999876222 22222345577789999999999999874
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00083 Score=61.36 Aligned_cols=92 Identities=11% Similarity=0.054 Sum_probs=71.2
Q ss_pred HccCChHHHHHHHHHHHHHhcCCCCCCCCCCCh-hhHHHHHHHHhccCCcchHhHHHHHHHHc-----C-CCCC-chhHH
Q 012879 42 SLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDS-FTYSFLIRTCATLSHPNLGTQLHAVISKV-----G-FQSH-VYVNT 113 (454)
Q Consensus 42 ~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~ 113 (454)
...|++++|+.++++...+.+.-.. |.+++. .+++.|..+|...|++++|..++++.++. | -.|+ ..+++
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg--~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 386 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFE--DSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL 386 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBC--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccC--hhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 3468899999999998865455444 433343 78999999999999999999999998762 2 1233 34788
Q ss_pred HHHHHHHhCCChhHHHHHHhhC
Q 012879 114 ALVNMYVSLGFLKDSSKLFDEM 135 (454)
Q Consensus 114 ~l~~~~~~~g~~~~a~~~~~~~ 135 (454)
.|...|...|++++|+.++++.
T Consensus 387 nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 387 KLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHH
Confidence 8999999999999999888654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00043 Score=48.56 Aligned_cols=61 Identities=20% Similarity=0.133 Sum_probs=55.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHHHhhcCCCC-cHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 386 LLGACSFHGNVEMGERVTRKILEMERGYGG-DYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 386 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
....+...|++++|++.++++++..|.+.. .+..++.++...|++++|.+.+++..+.+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 67 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD 67 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 456778899999999999999999999988 9999999999999999999999999887654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00059 Score=62.33 Aligned_cols=87 Identities=16% Similarity=0.047 Sum_probs=62.2
Q ss_pred cCCChHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------CCc-HhHHHHHH
Q 012879 323 HGGLVEEGLNFFDKMVEEC--EVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE--------ITD-VVVWRTLL 387 (454)
Q Consensus 323 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~~~~l~ 387 (454)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++.... .|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4567788888887766531 11222 456777888888888888888777765443 444 35788888
Q ss_pred HHHHcCCChhHHHHHHHHHHHh
Q 012879 388 GACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..|...|++++|+.+++++++.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 8999999999999999888764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.12 E-value=0.062 Score=53.79 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=98.2
Q ss_pred HHHhccCCcchHhH-HHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHH
Q 012879 82 RTCATLSHPNLGTQ-LHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFAR 160 (454)
Q Consensus 82 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~ 160 (454)
......+++++|.+ ++.. ++ +......++..+.+.|..+.|.++.+.- ..-.......|+++.|.
T Consensus 607 ~~~~~~~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~~--------~~~f~~~l~~~~~~~A~ 672 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPDQ--------DQKFELALKVGQLTLAR 672 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCCH--------HHHHHHHHHHTCHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCCc--------chheehhhhcCCHHHHH
Confidence 33445677777765 4311 11 1222367777888888888888766421 12234567789999999
Q ss_pred HHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCC
Q 012879 161 SLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTA 240 (454)
Q Consensus 161 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 240 (454)
++.+.+. +...|..+...+.+.|+++.|.+.|.++.+ |..+...+...|+.+...++.+.....|.
T Consensus 673 ~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-- 738 (814)
T 3mkq_A 673 DLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAETTGK-- 738 (814)
T ss_dssp HHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC--
T ss_pred HHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc--
Confidence 9887774 567889999999999999999999988754 33444455556666665555555554431
Q ss_pred chHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 241 FDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 241 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
++....+|.+.|++++|.+++.++.
T Consensus 739 -----~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 739 -----FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp -----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred -----hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2233344555666666666655443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.013 Score=58.74 Aligned_cols=125 Identities=14% Similarity=-0.023 Sum_probs=74.9
Q ss_pred HHHHhcCCHHHHHH-HHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHH
Q 012879 148 TGLVKWGELEFARS-LFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSC 226 (454)
Q Consensus 148 ~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 226 (454)
......+++++|.+ ++..+. +......++..+.+.|.++.|+++.+.-.. -.......|+++.|
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~-------------~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQDQ-------------KFELALKVGQLTLA 671 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHHH-------------HHHHHHHHTCHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcch-------------heehhhhcCCHHHH
Confidence 34455677777777 554443 112226666777777777777765532211 12334566777777
Q ss_pred HHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHH
Q 012879 227 QLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGR 301 (454)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 301 (454)
.++.+.+ .+...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.
T Consensus 672 ~~~~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 672 RDLLTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD-------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HHHHTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 7775432 2567788888888888888888888877655 44444444445555544444333
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0021 Score=58.80 Aligned_cols=98 Identities=4% Similarity=-0.068 Sum_probs=72.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCC-ChhhHHHHHHHHhccCCcchHhHHHHHHHHc-----C-CCCC
Q 012879 36 TLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLF-DSFTYSFLIRTCATLSHPNLGTQLHAVISKV-----G-FQSH 108 (454)
Q Consensus 36 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~ 108 (454)
..+..+.+.|++++|+..+++...+.+.-.. |.++ ...+++.+..+|...|++++|..+++++++. | ..|+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg--~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~ 369 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLP--DINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPV 369 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC--TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCC--ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChH
Confidence 4456677889999999999999843233233 3222 2367899999999999999999999987752 2 1122
Q ss_pred -chhHHHHHHHHHhCCChhHHHHHHhhC
Q 012879 109 -VYVNTALVNMYVSLGFLKDSSKLFDEM 135 (454)
Q Consensus 109 -~~~~~~l~~~~~~~g~~~~a~~~~~~~ 135 (454)
..+++.|...|...|++++|+.++++.
T Consensus 370 ~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 370 RGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 346888999999999999999888654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00061 Score=62.32 Aligned_cols=94 Identities=14% Similarity=0.033 Sum_probs=63.3
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHhcCCCC--------CCc-HhH
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEEC--EVLPD----IKHYGCLIDMLGRAGRLEQAEKTALGIPSE--------ITD-VVV 382 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~-~~~ 382 (454)
+..+...|++++|..++++..+.. -+.|+ ..+++.+..+|...|++++|+.+++++... .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 445556778888888887776531 11222 456677777788888888887777765433 333 356
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHhhc
Q 012879 383 WRTLLGACSFHGNVEMGERVTRKILEMER 411 (454)
Q Consensus 383 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 411 (454)
++.|...|...|++++|+.+++++++.-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 77777888888888888888888877743
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.014 Score=40.17 Aligned_cols=64 Identities=14% Similarity=-0.022 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 242 DIRVLNCLIDTYAKCGC---IFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
++..+..+..++...++ .++|..+|++.....| ++.....+...+.+.|++++|+..|+++.+.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455555554443332 4555555555555544 3444444555555555555555555555553
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.1 Score=40.36 Aligned_cols=44 Identities=14% Similarity=0.352 Sum_probs=19.6
Q ss_pred hcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 012879 152 KWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKM 197 (454)
Q Consensus 152 ~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 197 (454)
+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444333 23334444444444444444444444443
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0033 Score=44.56 Aligned_cols=69 Identities=17% Similarity=0.018 Sum_probs=45.6
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCC--------CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHH
Q 012879 351 GCLIDMLGRAGRLEQAEKTALGIPSE--------ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVL 419 (454)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~~~~--------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 419 (454)
-.|...+.+.|++..|..+|+.+... .+...++..+..++.+.|++++|+..++++++..|.+..+...
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 34444455555555555544443322 1345678888888999999999999999999888887655433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.045 Score=39.74 Aligned_cols=140 Identities=15% Similarity=0.063 Sum_probs=68.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHH
Q 012879 287 AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQA 366 (454)
Q Consensus 287 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 366 (454)
.-.|..++..++..+.... .+..-+|.+|--....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3356666666666665553 133444444433333334444444444443221111 12233333
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhcccc
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNAF 446 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (454)
...+-.+-. +....+..++.+..+|+-+.-.++...++...+.+++....++.+|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n~---~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINNT---LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTTC---CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcc---hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 222222221 23334444555566666666666666654444445555666666666666666666666666666553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.005 Score=46.42 Aligned_cols=90 Identities=9% Similarity=-0.164 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHhcCCCCC-C--cHhHHHHHHHHHHcCCChhHHH
Q 012879 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAG---RLEQAEKTALGIPSEI-T--DVVVWRTLLGACSFHGNVEMGE 400 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A~ 400 (454)
...+.+.|.+..+. +. ++..+...+..++++.+ +.++++.++++..... | ....+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34445555555443 22 45556566666666666 4446666666655553 4 2445566777888999999999
Q ss_pred HHHHHHHHhhcCCCCcHH
Q 012879 401 RVTRKILEMERGYGGDYV 418 (454)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~ 418 (454)
+.++.+++..|.+..+..
T Consensus 92 ~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 92 KYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHhcCCCCHHHHH
Confidence 999999998887765433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0031 Score=53.09 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=55.0
Q ss_pred hHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHhcCCCCCCc--HhHHHHHHHHHHc-CCC
Q 012879 327 VEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGRA-----GRLEQAEKTALGIPSEITD--VVVWRTLLGACSF-HGN 395 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~p~--~~~~~~l~~~~~~-~g~ 395 (454)
...|...+++..+. .|+ ...|..+...|.+. |+.++|.+.|++.....|+ ..++......++. .|+
T Consensus 179 l~~A~a~lerAleL---DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 179 VHAAVMMLERACDL---WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHH---CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred HHHHHHHHHHHHHh---CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 34555666666543 454 45667777777773 7777777777777766552 5666666666666 377
Q ss_pred hhHHHHHHHHHHHhhcC
Q 012879 396 VEMGERVTRKILEMERG 412 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~ 412 (454)
.++|.+.++++++..|.
T Consensus 256 ~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 256 RAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHHcCCCC
Confidence 77777777777777666
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.45 E-value=0.63 Score=46.36 Aligned_cols=255 Identities=6% Similarity=-0.101 Sum_probs=143.5
Q ss_pred HHhcCCHHHHHHHHhhCCCC----Cc--chHHHHHHHHHhcCChHHHHHHHHHHHHccCC------CCChhhHHhHHHHH
Q 012879 150 LVKWGELEFARSLFEEMPCR----NV--VSWTGIIDGYTRMNRSNEALALFRKMVACEYT------EPSEITILAVLPAI 217 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~~----~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~l~~~~ 217 (454)
.+..|+.++++.+++..... +. ..-..+.-+....|..+++..++......... .+....-..+.-++
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 45667777888888776641 11 12223344556667667788888877664110 01112222232333
Q ss_pred HccCc-hhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChhHH
Q 012879 218 WQNGD-VKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAMHGMGKEA 295 (454)
Q Consensus 218 ~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A 295 (454)
.-.|. -+++.+.+..+............-.+|...+...|+-+....++..+.+...+ +.-+..+.-++...|+.+.+
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~ 543 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELA 543 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHH
Confidence 33332 23444555554443211001123334555666778888888888877664332 22233333455578999999
Q ss_pred HHHHHHHHhCCCCCcHHHHH--HHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcC
Q 012879 296 VENFGRMQKVGLKPNRVTFL--SVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGI 373 (454)
Q Consensus 296 ~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 373 (454)
..+++.+.... .|....-. .+.-+|+..|+.....+++..+... ...+..-...+.-++...|+.+.+.++++.+
T Consensus 544 ~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv~~L 620 (963)
T 4ady_A 544 DDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIVQLL 620 (963)
T ss_dssp HHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTG
T ss_pred HHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 99998887641 23222222 3345678889988888899988763 2333443344444555678877777777766
Q ss_pred CCC-CCcHhHHHHHHHHHHcCCCh-hHHHHHHHHHH
Q 012879 374 PSE-ITDVVVWRTLLGACSFHGNV-EMGERVTRKIL 407 (454)
Q Consensus 374 ~~~-~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~ 407 (454)
... .|.+..-..+.-+....|+. .+++..+..+.
T Consensus 621 ~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 621 SKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp GGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 554 44444444445555555554 57788888775
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.042 Score=38.69 Aligned_cols=34 Identities=18% Similarity=0.079 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
...++..|..+|.+.|+++.|...++++....|+
T Consensus 45 ~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 45 KVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 4556666666666667777777666666665553
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.085 Score=39.72 Aligned_cols=86 Identities=10% Similarity=-0.069 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC---chhHHHHHHHhhhhcCCCC-chHHHHHHHHHHHHhcCChhHH
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNG---DVKSCQLIHGYGEKRGFTA-FDIRVLNCLIDTYAKCGCIFSA 262 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 262 (454)
...+.+.|.+..+. + +++..+...+..++.+++ +.+++..+++.+.+.. .| .....+..|.-+|.+.|++++|
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 44556666666553 3 377788888888888877 6668888888888874 13 2455666777788889999999
Q ss_pred HHHHHHhhhcCCC
Q 012879 263 SKLFEDISVERKN 275 (454)
Q Consensus 263 ~~~~~~~~~~~~~ 275 (454)
.+.++.+.+..|+
T Consensus 91 ~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 91 LKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCC
Confidence 9999988887774
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.22 Score=36.25 Aligned_cols=140 Identities=9% Similarity=-0.017 Sum_probs=79.3
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
.-.|..++..++..+...+ .+..-|+.++--....-+-+-..+.++.+-+. . | ...+|++..
T Consensus 18 ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki--F--D----------is~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY--F--D----------LDKCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG--S--C----------GGGCSCTHH
T ss_pred HHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhh--c--C----------cHhhhcHHH
Confidence 3446666666666655553 33444444444444444444444444333322 0 1 122444444
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 262 ASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
....+-.+- .+....+..+..+...|+-++-.+++..+.. +.+|++.....+..+|.+.|+..++.+++.++.+.
T Consensus 80 Vi~C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k- 154 (172)
T 1wy6_A 80 VVECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK- 154 (172)
T ss_dssp HHHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-
Confidence 444443332 3445556667777777888877777777544 24667777777788888888888888888877776
Q ss_pred CCC
Q 012879 342 EVL 344 (454)
Q Consensus 342 ~~~ 344 (454)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.17 Score=37.71 Aligned_cols=36 Identities=11% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCcchHHHHHHHHHhcCCh------HHHHHHHHHHHHccCCCCC
Q 012879 169 RNVVSWTGIIDGYTRMNRS------NEALALFRKMVACEYTEPS 206 (454)
Q Consensus 169 ~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~ 206 (454)
.|..+|-..+...-+.|++ ++..++|++... .++|+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~ 52 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPD 52 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGG
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCcc
Confidence 4556666666666666777 677777777766 45554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.22 Score=38.48 Aligned_cols=99 Identities=13% Similarity=0.032 Sum_probs=51.8
Q ss_pred HccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHH
Q 012879 218 WQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVE 297 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 297 (454)
...|+++.|.++.+.+ .+...|..|.+.....|+++-|.+.|.+... +..+.-.|...|+.++-.+
T Consensus 16 L~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------HHHHHHHHHHHTCHHHHHH
T ss_pred HhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------HHHHHHHHHHhCCHHHHHH
Confidence 3456666666555443 1455666666666666666666666666554 4444445555555555544
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 012879 298 NFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDK 336 (454)
Q Consensus 298 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 336 (454)
+-+.....| -++....++...|+++++.+++.+
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444433332 122233334445666666665543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.02 E-value=1.4 Score=43.94 Aligned_cols=304 Identities=9% Similarity=0.003 Sum_probs=165.7
Q ss_pred HHHhCCChhHHHHHHhhCCCC----Cchh--HHHHHHHHHhcCCHHHHHHHHhhCCC-CC----------cchHHHHHHH
Q 012879 118 MYVSLGFLKDSSKLFDEMPER----NLVT--WNVMITGLVKWGELEFARSLFEEMPC-RN----------VVSWTGIIDG 180 (454)
Q Consensus 118 ~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~-~~----------~~~~~~l~~~ 180 (454)
+....|+.++++.+++..... +..+ =..+.-+.+..|..+++..++..... ++ ...-.++.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 456788889999999887641 2222 12233445566666667776655432 22 1112233334
Q ss_pred HHhcCC-hHHHHHHHHHHHHccCCCCChhhHH--hHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 181 YTRMNR-SNEALALFRKMVACEYTEPSEITIL--AVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 181 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
++-.|. -+++.+.+..+... . .+...... .+...+.-.|+.+....++..+.+.. ..+..-...+.-++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~d-d-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYN-D-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHT-C-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhc-C-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCC
Confidence 444443 34667777777653 1 11111122 33334556788888888888777642 212233333444455779
Q ss_pred ChhHHHHHHHHhhhcCCChhhHH---HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHH
Q 012879 258 CIFSASKLFEDISVERKNLVSWT---SIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFF 334 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 334 (454)
+.+.+..+++.+........-|. ++.-+|+..|+.....+++..+.... ..+......+.-++...|+.+.+.+++
T Consensus 539 ~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 539 RQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp CGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 99999999888876432233343 23456777889888888999988752 223333333334555567777777777
Q ss_pred HHHHHhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHhcCCCCCCcHhHHHHHHHH--HHcCCChh----HHHHHHHHHH
Q 012879 335 DKMVEECEVLPDIKHYGCLIDMLGRAGRL-EQAEKTALGIPSEITDVVVWRTLLGA--CSFHGNVE----MGERVTRKIL 407 (454)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~----~A~~~~~~~~ 407 (454)
+.+.+. ..|.+..-..+.-+....|.. .+|...+..+... +|..+-..-+.+ ....|..+ +...+.+.+.
T Consensus 618 ~~L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D-~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~ 694 (963)
T 4ady_A 618 QLLSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL 694 (963)
T ss_dssp TTGGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred HHHHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 766553 345555445555555556554 5788888887765 444443333333 33344332 3444444443
Q ss_pred Hhhc---CCC--CcHHHHHHHHHhcCC
Q 012879 408 EMER---GYG--GDYVLMYNILAGVGR 429 (454)
Q Consensus 408 ~~~~---~~~--~~~~~l~~~~~~~g~ 429 (454)
..-. .++ ..-..++.+....|.
T Consensus 695 ~~~~dk~~d~~~~fga~iAqGll~aG~ 721 (963)
T 4ady_A 695 SVITNKHQEGLAKFGACVAQGIMNAGG 721 (963)
T ss_dssp HHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred HHHhcccccHHHHHHHHHHHHHHhcCC
Confidence 3322 122 222345555665554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.057 Score=39.06 Aligned_cols=91 Identities=9% Similarity=-0.199 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHhcCCCCC-C--cHhHHHHHHHHHHcCCChhHH
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ---AEKTALGIPSEI-T--DVVVWRTLLGACSFHGNVEMG 399 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p--~~~~~~~l~~~~~~~g~~~~A 399 (454)
....+.+.|...... +. ++..+--.+..++++..+... ++.+++++.... | .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555566655554 33 566666667777777776665 778888777763 4 233455677789999999999
Q ss_pred HHHHHHHHHhhcCCCCcHH
Q 012879 400 ERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~ 418 (454)
.+.++.+++..|.+..+..
T Consensus 94 ~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH
Confidence 9999999999998765543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.47 E-value=0.16 Score=36.77 Aligned_cols=90 Identities=9% Similarity=-0.127 Sum_probs=53.9
Q ss_pred cCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhH---HHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChh
Q 012879 184 MNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKS---CQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIF 260 (454)
Q Consensus 184 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 260 (454)
......+.+.|.+.... + .++..+-..+..++.++.+... ++.+++.+.+.+.+.........|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~-~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHH
Confidence 33444555555555443 2 3666666666677766665554 66777776665311123344455666777777777
Q ss_pred HHHHHHHHhhhcCCC
Q 012879 261 SASKLFEDISVERKN 275 (454)
Q Consensus 261 ~a~~~~~~~~~~~~~ 275 (454)
+|.+.++.+.+..|+
T Consensus 92 ~A~~~~~~lL~~eP~ 106 (126)
T 1nzn_A 92 KALKYVRGLLQTEPQ 106 (126)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 777777777776663
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=1.9 Score=41.26 Aligned_cols=114 Identities=11% Similarity=-0.004 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHH----HHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVL----PAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
+++.|...+....+. . ..+......+- ......+...++...+....... . +.....-.+....+.|+++.
T Consensus 229 d~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 229 DAENARLMIPSLAQA-Q-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--Q-STSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp CHHHHHHHHHHHHHH-T-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--C-CHHHHHHHHHHHHHHTCHHH
T ss_pred CHHHHHHHHHhhhhc-c-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--C-ChHHHHHHHHHHHHCCCHHH
Confidence 667777777766553 2 22322222222 22233332333444444333321 1 33333344444456677777
Q ss_pred HHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh
Q 012879 262 ASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK 304 (454)
Q Consensus 262 a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 304 (454)
|.+.|+.|..... .....--+..++...|+.++|..+|..+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7777777765322 233344455566667777777777777654
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.65 Score=42.56 Aligned_cols=15 Identities=7% Similarity=0.251 Sum_probs=12.2
Q ss_pred ChHHHHHHHHHHHHh
Q 012879 326 LVEEGLNFFDKMVEE 340 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~ 340 (454)
..++++.....|...
T Consensus 372 ~~~evE~~ls~mI~~ 386 (445)
T 4b4t_P 372 TESQTETYISDLVNQ 386 (445)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHC
Confidence 567888888888877
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.14 Score=43.25 Aligned_cols=97 Identities=10% Similarity=0.039 Sum_probs=73.4
Q ss_pred chhHHHHHHHHhhhhhhhhhhhHHHHHHHHHc-----cCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhc
Q 012879 12 NITTQIHSHLLTTNSLLHHSQLFNTLLHFYSL-----AESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCAT 86 (454)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~ 86 (454)
..++...++..+..+-..+...|..+...|.+ .|+.++|.+.|++.. ..++. - +..++......++.
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL---~LnP~--~---~id~~v~YA~~l~~ 251 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT---RYCSA--H---DPDHHITYADALCI 251 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH---HHCCT--T---CSHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH---HhCCC--C---CchHHHHHHHHHHH
Confidence 34555566666666544568899999999999 599999999999999 55543 2 46677888888888
Q ss_pred c-CCcchHhHHHHHHHHcCCC--CCchhHHHHH
Q 012879 87 L-SHPNLGTQLHAVISKVGFQ--SHVYVNTALV 116 (454)
Q Consensus 87 ~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~ 116 (454)
. |+.+.+.+.+++.+..... |+....+.+.
T Consensus 252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 252 PLNNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 4 9999999999999997766 6655555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.32 E-value=0.039 Score=41.03 Aligned_cols=114 Identities=14% Similarity=0.067 Sum_probs=77.6
Q ss_pred CcHHHHHHHHHHHhcCCCh------HHHHHHHHHHHHhcCCCCChh-HHHHHHH------HHHhcCChHHHHHHHhcCCC
Q 012879 309 PNRVTFLSVLNACSHGGLV------EEGLNFFDKMVEECEVLPDIK-HYGCLID------MLGRAGRLEQAEKTALGIPS 375 (454)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 375 (454)
-|..+|-..+...-+.|++ ++..++|++... .++|+.. .|...+. .+...+++++|.++|+.+..
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3666777777777777998 888899998887 5666531 1111111 12345788888888887754
Q ss_pred C-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 376 E-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 376 ~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
. .-=...|-...+--.++|+.+.|.+++.+++..+|.+.......+.-+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl 138 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNL 138 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhh
Confidence 3 111666666667777889999999999999988887766555544443
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.3 Score=37.09 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChh
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLV 277 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 277 (454)
..+-..+..+|.+.|++++|+.+++.+.....++.
T Consensus 122 ~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~k 156 (167)
T 3ffl_A 122 IEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPK 156 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHH
Confidence 34444456666666666666666666555433433
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.98 Score=47.08 Aligned_cols=81 Identities=11% Similarity=0.037 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcC-CC-----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 244 RVLNCLIDTYAKCGCIFSASKLFEDISVER-KN-----LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 244 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
..|..++..+.+.|.++.+.++-....+.. ++ ...|..+..++...|++++|...+-.+.....+ ...+..|
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHH
Confidence 456667777777777777776665554431 11 124666777777777887777777666554332 3445556
Q ss_pred HHHHhcCCC
Q 012879 318 LNACSHGGL 326 (454)
Q Consensus 318 ~~~~~~~~~ 326 (454)
+..+|..|.
T Consensus 978 V~~lce~~~ 986 (1139)
T 4fhn_B 978 VNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhCCC
Confidence 655555444
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.12 Score=50.44 Aligned_cols=55 Identities=11% Similarity=-0.028 Sum_probs=47.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 387 LGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 387 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
.+-|...|+++.|+++.++++...|.+-.+|..|+.+|.+.|+++.|+-.++-+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 4456678899999999999999988888899999999999999999998888774
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=94.01 E-value=2.7 Score=36.30 Aligned_cols=151 Identities=15% Similarity=0.090 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHH----HHHHhCCCCCcHHHHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENF----GRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~l~ 318 (454)
...|.++..=|.+.+++++|++++..-.. .+.+.|+..-|.++. +-+.+.++++|......++
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~-------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASVSQ-------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34566666778888899888887654332 345556655544443 4455567777777777777
Q ss_pred HHHhcCCChH-HHHHHHHHHHHh---cC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHH-------
Q 012879 319 NACSHGGLVE-EGLNFFDKMVEE---CE--VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRT------- 385 (454)
Q Consensus 319 ~~~~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~------- 385 (454)
..+.....-+ .=.++.+++.+- .| -.-|+.....+...|.+.+++.+|...|-- ...+.+..+..
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~il--g~~~s~~~~a~mL~ew~~ 179 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVL--GTKESPEVLARMEYEWYK 179 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTT--SCTTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHh--cCCchHHHHHHHHHHHHH
Confidence 7665544211 112233333221 12 223566667788888888888888887732 22122223322
Q ss_pred -------------HHHHHHcCCChhHHHHHHHHHHH
Q 012879 386 -------------LLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 386 -------------l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
.+--|...++...|..+++...+
T Consensus 180 ~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 180 QDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp TSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22235566788888887766654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=94.00 E-value=4.8 Score=41.98 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=28.6
Q ss_pred HHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 213 VLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
++..+...+..+.+.++.... +.++.....+..+|...|++++|...|++..
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 334444455555544433322 2244444556667777777777777777653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.36 Score=36.73 Aligned_cols=128 Identities=12% Similarity=-0.043 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc---CCCh-------hhHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCcHH-H
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVE---RKNL-------VSWTSIISGFAMHGMGKEAVENFGRMQKV-GLKPNRV-T 313 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~-~ 313 (454)
+..-+..+...|.++.|+-+.+.+... .|+. .++..+.+++...|++..|...|++.++. ..-+... +
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344456666777777777776664433 3332 24455667777777777777777775432 1111111 1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHH
Q 012879 314 FLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLL 387 (454)
Q Consensus 314 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~ 387 (454)
...+- .....+. .. ....+...--.+..+|.+.|++++|+.+++.+..+..++.+--.|.
T Consensus 103 ~~~~~---~~ss~p~----------s~-~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~La 162 (167)
T 3ffl_A 103 RPSTG---NSASTPQ----------SQ-CLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLA 162 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHH
T ss_pred ccccc---ccCCCcc----------cc-cccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHH
Confidence 11110 0000000 00 2223444445577888888888888888888876633444433333
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.93 E-value=2.7 Score=36.01 Aligned_cols=154 Identities=12% Similarity=0.068 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCcHHHHHHHH
Q 012879 243 IRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVEN----FGRMQKVGLKPNRVTFLSVL 318 (454)
Q Consensus 243 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~l~ 318 (454)
...|.++..=|.+.+++++|++++..-.. .+.+.|+...|.++ ++-+.+.+++++......++
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~-------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQGAL-------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 44566677778888899998888665433 35556666655554 45555678888888888888
Q ss_pred HHHhcCCChH-HHHHHHHHHHHh---cC--CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCC-----------------
Q 012879 319 NACSHGGLVE-EGLNFFDKMVEE---CE--VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPS----------------- 375 (454)
Q Consensus 319 ~~~~~~~~~~-~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------- 375 (454)
..+......+ .-.++++.+.+- .| -.-++.....+...|.+.|++.+|...|-....
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 7765532111 123344444322 12 123567778888999999999999886653221
Q ss_pred --CCCc-HhH-HHHHHHHHHcCCChhHHHHHHHHHHHh
Q 012879 376 --EITD-VVV-WRTLLGACSFHGNVEMGERVTRKILEM 409 (454)
Q Consensus 376 --~~p~-~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~ 409 (454)
..|. ... ....+--|...|+...|..+++...+.
T Consensus 180 ~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 180 DDIEDSTVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 1010 111 112223455678888888888877644
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.76 E-value=3.6 Score=36.74 Aligned_cols=285 Identities=11% Similarity=0.012 Sum_probs=143.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHhhCCC--------CCchhHHHHHHHHHhcC-CHHHHHHHHhhCCC---CCcchH-----
Q 012879 112 NTALVNMYVSLGFLKDSSKLFDEMPE--------RNLVTWNVMITGLVKWG-ELEFARSLFEEMPC---RNVVSW----- 174 (454)
Q Consensus 112 ~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~~~-~~~~A~~~~~~~~~---~~~~~~----- 174 (454)
...|...|.+.|+.++..+++..... ........++..+.... ..+.-.++..+..+ .+-.+|
T Consensus 22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l 101 (394)
T 3txn_A 22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSL 101 (394)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777776654 12234445555555432 22333333322221 111222
Q ss_pred -HHHHHHHHhcCChHHHHHHHHHHHHccCCCCCh-----hhHHhHHHHHHccCchhHHHHHHHhhhhcC--CCCchHHHH
Q 012879 175 -TGIIDGYTRMNRSNEALALFRKMVACEYTEPSE-----ITILAVLPAIWQNGDVKSCQLIHGYGEKRG--FTAFDIRVL 246 (454)
Q Consensus 175 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~ 246 (454)
..++..|...|++.+|..++.++.+. -...|. ..+..-+..|...++..++...+....... +.+ ++.+.
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~-~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~-~p~i~ 179 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRE-LKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC-PPKVQ 179 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHH-HhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC-CHHHH
Confidence 25778888999999998888888774 222232 235555667778888888888877765431 111 22222
Q ss_pred ----HHHHHHHH-hcCChhHHHHHHHHhhhc--CCC------hhhHHHHHHHHHhcCChhHHHHHHH-HHHhCCCCCcHH
Q 012879 247 ----NCLIDTYA-KCGCIFSASKLFEDISVE--RKN------LVSWTSIISGFAMHGMGKEAVENFG-RMQKVGLKPNRV 312 (454)
Q Consensus 247 ----~~l~~~~~-~~g~~~~a~~~~~~~~~~--~~~------~~~~~~l~~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~ 312 (454)
..-.-.+. ..+++..|...|-+.... ... ...|..+. +.. .++..+...++. .....-..|...
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~-aLl-~~~r~el~~~l~~~~~~~~~~pei~ 257 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLC-KIM-LGQSDDVNQLVSGKLAITYSGRDID 257 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-HHH-TTCGGGHHHHHHSHHHHTTCSHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHH-HHH-cCCHHHHHHHhccccccccCCccHH
Confidence 22233455 678888888877665432 111 11222222 222 223222222221 111111245555
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSF 392 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~ 392 (454)
.+..++.++ ..+++.+...+++.... .+..|......+-..+- .-...++..+-+ +-...++..+...+.-
T Consensus 258 ~l~~L~~a~-~~~dl~~f~~iL~~~~~--~l~~D~~l~~h~~~L~~--~Ir~~~L~~i~~----pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 258 AMKSVAEAS-HKRSLADFQAALKEYKK--ELAEDVIVQAHLGTLYD--TMLEQNLCRIIE----PYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHSTT--TTTTSHHHHHHHHHHHH--HHHHHHHHHHHT----TCSEEEHHHHHHHHTC
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHHH--HHhcChHHHHHHHHHHH--HHHHHHHHHHhH----hhceeeHHHHHHHHCc
Confidence 666666665 44677666666655533 34445432211111110 001111111111 0133455555555533
Q ss_pred CCChhHHHHHHHHHHHhhc
Q 012879 393 HGNVEMGERVTRKILEMER 411 (454)
Q Consensus 393 ~g~~~~A~~~~~~~~~~~~ 411 (454)
..++++..+-+|+..|.
T Consensus 329 --s~~evE~~L~~lI~dg~ 345 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDKK 345 (394)
T ss_dssp --CHHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHHCCC
Confidence 67788888888887653
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.65 E-value=2.4 Score=38.80 Aligned_cols=43 Identities=2% Similarity=-0.099 Sum_probs=22.3
Q ss_pred CChhHHHHHHhhCCC-----C----CchhHHHHHHHHHhcCCHHHHHHHHhh
Q 012879 123 GFLKDSSKLFDEMPE-----R----NLVTWNVMITGLVKWGELEFARSLFEE 165 (454)
Q Consensus 123 g~~~~a~~~~~~~~~-----~----~~~~~~~ll~~~~~~~~~~~A~~~~~~ 165 (454)
|++++|++.+-.+.+ . .......++..|...|+++...+.+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~ 81 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL 81 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 556666655543321 1 122345566666666666666554443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.02 E-value=2.9 Score=33.46 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=6.6
Q ss_pred CchhHHHHHHHHHhCCC
Q 012879 108 HVYVNTALVNMYVSLGF 124 (454)
Q Consensus 108 ~~~~~~~l~~~~~~~g~ 124 (454)
+...-...+..+.+.|+
T Consensus 32 ~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 33333333444444443
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=93.02 E-value=2.9 Score=33.46 Aligned_cols=186 Identities=10% Similarity=0.015 Sum_probs=102.5
Q ss_pred ChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCC
Q 012879 124 FLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYT 203 (454)
Q Consensus 124 ~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 203 (454)
+.+....+.+.+..++...-...+..+.+.|+.+....+.+.+..++...-...+.++...++.+ +...+.++..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---- 91 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---- 91 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc----
Confidence 33344444444555666666666666666666555555555566666666666666666666543 3344444433
Q ss_pred CCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHH
Q 012879 204 EPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSII 283 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~ 283 (454)
.++..+-...+.++.+.++.+....+.+ +.+. + +..+-...+.++.+.|..+... .+..+.. .++..+-...+
T Consensus 92 ~~~~~vr~~a~~aL~~~~~~~~~~~L~~-~l~d---~-~~~vr~~a~~aL~~~~~~~~~~-~L~~~l~-d~~~~vr~~a~ 164 (211)
T 3ltm_A 92 DEDGWVRQSAAVALGQIGDERAVEPLIK-ALKD---E-DWFVRIAAAFALGEIGDERAVE-PLIKALK-DEDGWVRQSAA 164 (211)
T ss_dssp CSSHHHHHHHHHHHHHHCCGGGHHHHHH-HTTC---S-SHHHHHHHHHHHHHHCCGGGHH-HHHHHTT-CSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcHHHHHHHHH-HHhC---C-CHHHHHHHHHHHHHcCCHHHHH-HHHHHHc-CCCHHHHHHHH
Confidence 3566666666677777666544433333 3322 2 6666666677777777654333 3333332 26666666667
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCC
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGG 325 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 325 (454)
.++.+.+. ..+...+..+.+. ++...-...+.++...+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 77777665 4555666666553 34455555555555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.63 E-value=0.54 Score=42.20 Aligned_cols=73 Identities=15% Similarity=0.305 Sum_probs=57.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCcHHHHHHH
Q 012879 245 VLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGLKPNRVTFLSV 317 (454)
Q Consensus 245 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l 317 (454)
+...++..+...|+++++...+..+....| +...+..+|.++...|+..+|++.|++..+ .|+.|+..+-...
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 455677788888999999988888877766 777888899999999999999998887653 4888887654433
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.18 Score=45.39 Aligned_cols=58 Identities=12% Similarity=0.075 Sum_probs=32.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHH
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKIL 407 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 407 (454)
...++..+...|++++|...+..+....| +...|..++.++.+.|+..+|++.|++..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555566666666655555544322 44556666666666666666666665554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.03 E-value=0.92 Score=31.00 Aligned_cols=63 Identities=13% Similarity=0.170 Sum_probs=46.6
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
+.-+..+-++.+....+.|++....+.+.+|.+.+++..|.++++.++..++- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 44566677777777778888888888888888888888888888888775433 3456666654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.91 E-value=6.6 Score=35.03 Aligned_cols=159 Identities=9% Similarity=-0.060 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--------CCcchHHHHHHHHHhc-CChHHHHHHHHHHHHccCCCCChhhHH-
Q 012879 142 TWNVMITGLVKWGELEFARSLFEEMPC--------RNVVSWTGIIDGYTRM-NRSNEALALFRKMVACEYTEPSEITIL- 211 (454)
Q Consensus 142 ~~~~ll~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~- 211 (454)
+...+...|.+.|+.++..+++..... ........++..+... +..+.-.++..+..+... -+..+|.
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~--~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK--QEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH--HTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 455677788888888888888877764 1223344555555543 333444444444443200 1112221
Q ss_pred -----hHHHHHHccCchhHHHHHHHhhhhcCCC----CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc----CCChhh
Q 012879 212 -----AVLPAIWQNGDVKSCQLIHGYGEKRGFT----AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE----RKNLVS 278 (454)
Q Consensus 212 -----~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~ 278 (454)
-++..|...|++.+|.+++..+.+.-.. ..-..++..-+..|...+++.++...+...... .+++..
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 4556666666666666666555543111 111234445555666666666666666655433 122222
Q ss_pred HHHH----HHHHH-hcCChhHHHHHHHHH
Q 012879 279 WTSI----ISGFA-MHGMGKEAVENFGRM 302 (454)
Q Consensus 279 ~~~l----~~~~~-~~g~~~~A~~~~~~m 302 (454)
-..+ ...+. ..+++..|...|-+.
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 1111 12233 456666666655554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.78 E-value=2.4 Score=41.44 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=79.4
Q ss_pred HHHHHHHHHHhcCC-hhHHHHHHHHhhhcCCChhhHH--HHHHHHHhcC-ChhHHHHHHHHHHhC------CCCC-cHH-
Q 012879 245 VLNCLIDTYAKCGC-IFSASKLFEDISVERKNLVSWT--SIISGFAMHG-MGKEAVENFGRMQKV------GLKP-NRV- 312 (454)
Q Consensus 245 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~--~l~~~~~~~g-~~~~A~~~~~~m~~~------~~~p-~~~- 312 (454)
....++..+...|+ ++.|..+|+++....|...++- .++..+...+ +--+|.+++.+..+. ...+ +..
T Consensus 250 L~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 250 LMYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 44556666666666 5778889998888766444322 2333333332 223455555554321 1111 110
Q ss_pred --HH---HHHH----HHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 012879 313 --TF---LSVL----NACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIP 374 (454)
Q Consensus 313 --~~---~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 374 (454)
.. ..|+ .-|...|+++.|.++-++.... .+.+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 00 1122 3345679999999999998864 33447889999999999999999999998885
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.97 E-value=7.2 Score=33.72 Aligned_cols=166 Identities=10% Similarity=0.016 Sum_probs=95.1
Q ss_pred HHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHH----HHHHHccCCCCChhhHHhHHHHHHcc
Q 012879 145 VMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALF----RKMVACEYTEPSEITILAVLPAIWQN 220 (454)
Q Consensus 145 ~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (454)
++..-|.+.+++++|++++.. -...+.+.|+...+.++- +-..+. ++++|......++..+...
T Consensus 40 Ti~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~-~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 40 LVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQA-GQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhC
Confidence 455567777888888777643 234455566665554443 333344 7777777777777766554
Q ss_pred Cchh-----HHHHHHHhhhhcC-CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhH
Q 012879 221 GDVK-----SCQLIHGYGEKRG-FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKE 294 (454)
Q Consensus 221 ~~~~-----~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 294 (454)
..-+ -..+...+-.+.| ..-.++.....+...|.+.+++.+|...|- ....+++..|..++--+...+...
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~~~~~~~- 184 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWYKQDESH- 184 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHHHTSCGG-
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHHHhcCCc-
Confidence 4311 1222233333333 233478888999999999999999998883 222233355554444433333211
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 012879 295 AVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVE 339 (454)
Q Consensus 295 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 339 (454)
.++...-..++. |...++...|...++.+.+
T Consensus 185 -------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 -------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 223333333443 3446788888887777665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=90.13 E-value=1.5 Score=32.37 Aligned_cols=73 Identities=18% Similarity=0.054 Sum_probs=53.8
Q ss_pred CCChhHHHHHHHHHHhcCChH---HHHHHHhcCCCCCC--cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 344 LPDIKHYGCLIDMLGRAGRLE---QAEKTALGIPSEIT--DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
.|+..+--.+..++.+..+.+ +++.+++++....| .....-.|.-++.+.|++++|.++.+.+++..|.+..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 567777667777888877654 56677777655434 23445567778999999999999999999999987644
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.61 E-value=0.53 Score=34.22 Aligned_cols=72 Identities=18% Similarity=0.059 Sum_probs=45.9
Q ss_pred CChhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCCC--cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 345 PDIKHYGCLIDMLGRAGRL---EQAEKTALGIPSEIT--DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
|+..+--.+..++++..+. .+++.+++++....| ....+-.|.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4555555566666666554 345666666554434 23445566677788888888888888888877776543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.51 E-value=1.6 Score=29.84 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=30.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
|.-+..+-++.+... .+.|++.+..+.+++|.+.+++..|.++++.++.+
T Consensus 25 D~~e~rrglN~l~~~-DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 444555555555443 55666666666666666666666666666665544
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=89.50 E-value=6.6 Score=30.95 Aligned_cols=74 Identities=8% Similarity=0.050 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 012879 113 TALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 113 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (454)
...+..+...|+.+....+.+.+..++...-...+.++.+.|+.+....+.+.+..++...-...+.++...++
T Consensus 32 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 32 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333444444333333333333334444444444444444444333333333444444444444444444443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=89.01 E-value=4 Score=29.67 Aligned_cols=71 Identities=14% Similarity=-0.003 Sum_probs=39.9
Q ss_pred CCChhhHHhHHHHHHccCch---hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 204 EPSEITILAVLPAIWQNGDV---KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
.|+..|--....++.++.+. ..++.+++.+.+.+ .........-|.-++.+.|+++.|.+..+.+.+..|+
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~ 110 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 110 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCC
Confidence 35555555555555555433 35566666666553 1123444555666666777777777777776666553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.93 E-value=2.1 Score=31.06 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=47.4
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
+.-+..+-++.+....+.|++......+.+|.+.+|+..|.++++-++...+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 3445666677777777888888898999999999999999999988887533 34556766664
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.44 E-value=5.5 Score=33.08 Aligned_cols=119 Identities=14% Similarity=0.099 Sum_probs=74.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh----hHHHHHHHHHHh
Q 012879 284 SGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI----KHYGCLIDMLGR 359 (454)
Q Consensus 284 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 359 (454)
....+.|++++|++....-++.. +-|...-..++..+|-.|+++.|.+-++...+. .|+. ..|..+|.+-
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~aE-- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAA-- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH--
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHHH--
Confidence 34567788888888888777764 336666777888888899999999888888764 3443 3344444321
Q ss_pred cCChHHHH-HHHhcCCC-C--CCcHhHHHHHHHHHH--cCCChhHHHHHHHHHHHhhcCC
Q 012879 360 AGRLEQAE-KTALGIPS-E--ITDVVVWRTLLGACS--FHGNVEMGERVTRKILEMERGY 413 (454)
Q Consensus 360 ~g~~~~A~-~~~~~~~~-~--~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~ 413 (454)
... ++|..-.. . .....-...++.+.. ..|+.++|.++-.++.+.-|..
T Consensus 79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 122 22322111 0 112223344555544 4699999999999998876653
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.16 E-value=13 Score=31.76 Aligned_cols=182 Identities=9% Similarity=0.043 Sum_probs=101.3
Q ss_pred HHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHH----H
Q 012879 119 YVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALAL----F 194 (454)
Q Consensus 119 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~ 194 (454)
-...|++=+|.+.++ ++..-|.+.+++++|++++.. -...+.+.|+...|.++ +
T Consensus 23 ~I~~G~yYEAhQ~~R-----------tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llv 80 (312)
T 2wpv_A 23 KIKAGDYYEAHQTLR-----------TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLL 80 (312)
T ss_dssp HHHHTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhccChHHHHHHHH-----------HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHH
Confidence 334455555555443 455566677777777776644 22444556666655543 3
Q ss_pred HHHHHccCCCCChhhHHhHHHHHHccCc-----hhHHHHHHHhhhhcCC-CCchHHHHHHHHHHHHhcCChhHHHHHHHH
Q 012879 195 RKMVACEYTEPSEITILAVLPAIWQNGD-----VKSCQLIHGYGEKRGF-TAFDIRVLNCLIDTYAKCGCIFSASKLFED 268 (454)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 268 (454)
+-..+. +.+++......++..+..... ..-..+......+.|. .-.++.....+...|.+.|++.+|...|--
T Consensus 81 ev~~~~-~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~ 159 (312)
T 2wpv_A 81 EVYDLA-EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML 159 (312)
T ss_dssp HHHHHT-TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHc-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh
Confidence 333344 677777777766666644321 1222333444443332 234788999999999999999999988763
Q ss_pred hhhcCCChhhHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 269 ISVERKNLVSWTSIISGFAMH---GMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 269 ~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
-.. .|...+..++--+... |...++ +...-..++ .|.-.|+...|..+++...+.
T Consensus 160 ~~~--~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 160 GTH--DSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp SCH--HHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCC--ccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 221 1344444444333332 322221 222222233 234568899999988887654
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=86.79 E-value=13 Score=31.15 Aligned_cols=17 Identities=6% Similarity=-0.173 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHHHhcCC
Q 012879 242 DIRVLNCLIDTYAKCGC 258 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~ 258 (454)
++.+-...+.++...|+
T Consensus 141 ~~~vR~~a~~aL~~~~~ 157 (280)
T 1oyz_A 141 STNVRRATAFAISVIND 157 (280)
T ss_dssp CHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHhcCC
Confidence 44444444555555444
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.34 E-value=11 Score=34.30 Aligned_cols=57 Identities=14% Similarity=-0.051 Sum_probs=27.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhcC----CChhhHHHHHHHHHhcCChhHHHHHHHHH
Q 012879 246 LNCLIDTYAKCGCIFSASKLFEDISVER----KNLVSWTSIISGFAMHGMGKEAVENFGRM 302 (454)
Q Consensus 246 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 302 (454)
...+...|.+.|+++.|.+.|.++.... .-...+-.++..+...+++..+...+.+.
T Consensus 134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3344455555555555555555544431 11223444445555555555555555544
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=85.98 E-value=3 Score=30.28 Aligned_cols=49 Identities=12% Similarity=0.093 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 327 VEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 327 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
.-+..+-++.+... .+.|++.+..+-+.+|.+.+++..|.++|+.++.+
T Consensus 69 ~wElrrglN~l~~~-DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 69 AWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444444444433 45566666666666666666666666666655544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.85 E-value=3.5 Score=32.54 Aligned_cols=50 Identities=18% Similarity=0.149 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHHhhcC--CCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 396 VEMGERVTRKILEMERG--YGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
..++.++|..|...+.+ ....|...+..+...|++++|.++++.=++.+.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A 146 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNC 146 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 44555555555555444 223344555555555555555555555544443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=81.98 E-value=13 Score=27.38 Aligned_cols=70 Identities=13% Similarity=-0.037 Sum_probs=37.9
Q ss_pred CCChhhHHhHHHHHHccCch---hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC
Q 012879 204 EPSEITILAVLPAIWQNGDV---KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK 274 (454)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 274 (454)
.|+..+-.....++.++.+. ..+..+++.+.+.+.. .......-|.-++.+.|++++|.+..+.+.+..|
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP 108 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 108 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 45555555555555555433 3455566665554211 1333444455566666666666666666666555
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=80.80 E-value=18 Score=28.25 Aligned_cols=51 Identities=10% Similarity=0.101 Sum_probs=22.1
Q ss_pred CCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 012879 136 PERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 136 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (454)
..++...-...+..+.+.++.+....+.+.+..++...-...+.++...+.
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 334444444444444454443333344444444444443344444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 454 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-05 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 7e-05
Identities = 42/291 (14%), Positives = 82/291 (28%), Gaps = 14/291 (4%)
Query: 154 GELEFARSLFEEM----PCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEIT 209
G+ E A ++ P N + + + R + + + +
Sbjct: 13 GDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 210 ILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDI 269
L + H K F I + L+ G + + +
Sbjct: 72 NLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN 131
Query: 270 SVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVL-NACSHGGLVE 328
+++ K Q PN S L + G +
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-----PNFAVAWSNLGCVFNAQGEIW 186
Query: 329 EGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLG 388
++ F+K V D Y L ++L A ++A L S + V L
Sbjct: 187 LAIHHFEKAVTLDPNFLDA--YINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244
Query: 389 ACSFH-GNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRR 438
+ G +++ R+ +E++ + Y + N L G +AE
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYN 295
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 454 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.74 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.44 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.37 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.34 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.3 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.27 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.78 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.77 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.75 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.74 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.68 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.65 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.63 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.63 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.57 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.53 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.5 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.44 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.39 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.39 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.34 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.29 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.28 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.26 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.14 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.13 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.05 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.04 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.03 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.01 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.85 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.75 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.73 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.7 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.68 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.64 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 97.6 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.24 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.84 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.16 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.0 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.87 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.5 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.03 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.41 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.06 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=9.2e-26 Score=204.99 Aligned_cols=376 Identities=12% Similarity=0.056 Sum_probs=315.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHH
Q 012879 37 LLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALV 116 (454)
Q Consensus 37 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 116 (454)
+...+.+.|++++|++.|+++. +..+. +...+..+..++...|++++|...++.+++.. +-+..++..+.
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l---~~~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~ 74 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLW---RQEPD------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLG 74 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4566788999999999999998 66555 78899999999999999999999999999875 45677899999
Q ss_pred HHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcCCHHHHHHHHhhCC---CCCcchHHHHHHHHHhcCChHHH
Q 012879 117 NMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWGELEFARSLFEEMP---CRNVVSWTGIIDGYTRMNRSNEA 190 (454)
Q Consensus 117 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 190 (454)
.+|.+.|++++|...+....+ .+...+..........+....+........ .................+....+
T Consensus 75 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHH
T ss_pred HHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 999999999999999998874 233344444444445555444444443332 24455666677778888999999
Q ss_pred HHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 012879 191 LALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDIS 270 (454)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 270 (454)
...+.+... ..+.+...+..+...+...|+++.|...++...+. .|.+...+..+..++...|++++|...+++..
T Consensus 155 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 230 (388)
T d1w3ba_ 155 KACYLKAIE--TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRAL 230 (388)
T ss_dssp HHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHH
T ss_pred HHHHHHhhc--cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhH
Confidence 999988877 34556778888889999999999999999999886 56688899999999999999999999999988
Q ss_pred hcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhH
Q 012879 271 VERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKH 349 (454)
Q Consensus 271 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 349 (454)
...| +...+..+...+.+.|++++|+..|++..+.. +-+..++..+...+...|++++|.+.++..... .+.+...
T Consensus 231 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 307 (388)
T d1w3ba_ 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADS 307 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CCccchh
Confidence 8755 66778889999999999999999999998864 235678888999999999999999999999874 4566788
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcC
Q 012879 350 YGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVG 428 (454)
Q Consensus 350 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (454)
+..+...+...|++++|++.|++..+..| +..++..+..+|...|++++|++.|+++++..|.++.+|..++.+|.+.|
T Consensus 308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~ 387 (388)
T d1w3ba_ 308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 88999999999999999999999888745 56788999999999999999999999999999999999999999999887
Q ss_pred C
Q 012879 429 R 429 (454)
Q Consensus 429 ~ 429 (454)
+
T Consensus 388 D 388 (388)
T d1w3ba_ 388 D 388 (388)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.4e-22 Score=183.74 Aligned_cols=369 Identities=11% Similarity=0.008 Sum_probs=306.8
Q ss_pred CCCCchhHHHHHHHHhhhhhhhhhhhHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhcc
Q 012879 8 QTPNNITTQIHSHLLTTNSLLHHSQLFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATL 87 (454)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~ 87 (454)
.++.+.+..+++.+.+..| .++.++..+...|.+.|++++|+..|+.+. +..+. +..+|..+..++...
T Consensus 12 ~G~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al---~~~p~------~~~a~~~l~~~~~~~ 80 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQEP--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAI---KQNPL------LAEAYSNLGNVYKER 80 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH---HHCTT------CHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCC------CHHHHHHHHHHhhhh
Confidence 4678889999999998886 678899999999999999999999999998 66655 778999999999999
Q ss_pred CCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCC---CCCchhHHHHHHHHHhcCCHHHHHHHHh
Q 012879 88 SHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMP---ERNLVTWNVMITGLVKWGELEFARSLFE 164 (454)
Q Consensus 88 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~A~~~~~ 164 (454)
|++++|...+....+.. +.+..............+....+........ .................+....+...+.
T Consensus 81 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
T d1w3ba_ 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 99999999999998876 4455555555555666666666555554433 2445556666677778888888888777
Q ss_pred hCCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCc
Q 012879 165 EMPC--R-NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAF 241 (454)
Q Consensus 165 ~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 241 (454)
.... | +...+..+...+...|++++|...+++..+. .+-+...+..+...+...|++++|...++...... +.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~ 235 (388)
T d1w3ba_ 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PN 235 (388)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TT
T ss_pred HhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh--CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh--hh
Confidence 6553 3 4567888889999999999999999999874 34567788999999999999999999999998874 44
Q ss_pred hHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 242 DIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 242 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
+...+..+..++.+.|++++|...|++..+..| +..++..+...+...|++++|.+.++...... +.+...+..+...
T Consensus 236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANI 314 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHH
Confidence 778888999999999999999999999988766 67789999999999999999999999988763 4577788889999
Q ss_pred HhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 321 CSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 321 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
+...|++++|.+.|++..+. .+.+..++..+..+|.+.|++++|.+.|+++.+..| +..+|..+..+|.+.||
T Consensus 315 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999998753 233477888999999999999999999999888755 46789999999988876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=6.6e-16 Score=135.81 Aligned_cols=257 Identities=11% Similarity=-0.043 Sum_probs=200.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
.-.....+.+.|++++|+..|+++.+ ..|-+..+|..+..++...|+++.|...+.++.+. .|.+...+..++.+|
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~ 97 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQ--QDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL--KPDNQTALMALAVSF 97 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcc--ccccccccccccccc
Confidence 33466678888999999999999887 34556778888888999999999999999988886 466788888899999
Q ss_pred HhcCChhHHHHHHHHhhhcCCChhh----------------HHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcHHHHHH
Q 012879 254 AKCGCIFSASKLFEDISVERKNLVS----------------WTSIISGFAMHGMGKEAVENFGRMQKVG-LKPNRVTFLS 316 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ 316 (454)
...|++++|.+.+++.....|+... ....+..+...+...+|...+.+..+.. -.++...+..
T Consensus 98 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 98 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 9999999999999888766443211 1112223445567788888888877643 2345677888
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
+...+...|++++|...++..... .+-+...|..+..+|...|++++|.+.|+++.+..| +..+|..+..+|.+.|+
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~ 255 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 255 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCC
Confidence 888899999999999999999875 233577888999999999999999999998876644 57789999999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCC-----------cHHHHHHHHHhcCCcCcHHHH
Q 012879 396 VEMGERVTRKILEMERGYGG-----------DYVLMYNILAGVGRFGDAERL 436 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~a~~~ 436 (454)
+++|++.|+++++..|.+.. .|..+..++...|+.+.+...
T Consensus 256 ~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 256 HREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999887543 345567777777887766544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2e-16 Score=139.24 Aligned_cols=231 Identities=15% Similarity=0.069 Sum_probs=193.6
Q ss_pred HHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHh
Q 012879 210 ILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAM 288 (454)
Q Consensus 210 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~ 288 (454)
.......+.+.|++++|...|+++.+. .|.+..++..+..+|...|++++|...|++..+..| +...+..+...|..
T Consensus 22 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 99 (323)
T d1fcha_ 22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTN 99 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccc
Confidence 345667788999999999999999987 576899999999999999999999999999988877 67788889999999
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHH----------------HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHH
Q 012879 289 HGMGKEAVENFGRMQKVGLKPNRV----------------TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGC 352 (454)
Q Consensus 289 ~g~~~~A~~~~~~m~~~~~~p~~~----------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 352 (454)
.|++++|.+.+++..... |+.. .....+..+...+.+.++...+....+...-.++..++..
T Consensus 100 ~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~ 177 (323)
T d1fcha_ 100 ESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 177 (323)
T ss_dssp TTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred cccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchh
Confidence 999999999999987642 2111 0111122233446678888898888776344456778888
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcC
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFG 431 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 431 (454)
+...+...|++++|+..+++.....| +..+|..+...|...|++++|++.++++++..|.++.++..++.+|.+.|+++
T Consensus 178 l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 178 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHR 257 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998776644 57789999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhhcc
Q 012879 432 DAERLRRVMDERN 444 (454)
Q Consensus 432 ~a~~~~~~~~~~~ 444 (454)
+|++.+++..+..
T Consensus 258 ~A~~~~~~al~l~ 270 (323)
T d1fcha_ 258 EAVEHFLEALNMQ 270 (323)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999987753
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=4.2e-11 Score=105.82 Aligned_cols=88 Identities=19% Similarity=0.150 Sum_probs=38.9
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCC-----cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhc------CCCCcHHHHH
Q 012879 353 LIDMLGRAGRLEQAEKTALGIPSEIT-----DVVVWRTLLGACSFHGNVEMGERVTRKILEMER------GYGGDYVLMY 421 (454)
Q Consensus 353 l~~~~~~~g~~~~A~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~ 421 (454)
+...+...|++++|...+++.....| ....+..+..++...|++++|...+++++.... .....+..++
T Consensus 219 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 298 (366)
T d1hz4a_ 219 RVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHH
Confidence 33444445555555555544443311 122333344445555555555555555443221 1222344445
Q ss_pred HHHHhcCCcCcHHHHHHHH
Q 012879 422 NILAGVGRFGDAERLRRVM 440 (454)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~ 440 (454)
.++.+.|++++|.+.+++.
T Consensus 299 ~~~~~~g~~~~A~~~l~~A 317 (366)
T d1hz4a_ 299 QLYWQAGRKSDAQRVLLDA 317 (366)
T ss_dssp HHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHH
Confidence 5555555555555555443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=7.9e-12 Score=105.43 Aligned_cols=226 Identities=8% Similarity=-0.120 Sum_probs=147.1
Q ss_pred ChHHHHHHHHHHHHccCCCC--ChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHH
Q 012879 186 RSNEALALFRKMVACEYTEP--SEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSAS 263 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 263 (454)
+.+.++.-+++........+ ...++..+..++.+.|+++.|...|++..+. .|.++.++..+..+|.+.|++++|+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhh
Confidence 44556666666665312111 1245667777888888888888888888886 5668888889999999999999999
Q ss_pred HHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcC
Q 012879 264 KLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECE 342 (454)
Q Consensus 264 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 342 (454)
..|+++.+..| +..++..+..++...|++++|...|++..+... .+......+..++.+.+..+....+.......
T Consensus 92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 168 (259)
T d1xnfa_ 92 EAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-- 168 (259)
T ss_dssp HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--
T ss_pred hhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--
Confidence 99999888766 566788888888889999999999988877532 23444333444455555555555555555442
Q ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC----CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 343 VLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE----IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 343 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
.++...+. ++..+................... .| ...+|..+...|...|++++|+..|++++...|.+...|
T Consensus 169 -~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 246 (259)
T d1xnfa_ 169 -DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH 246 (259)
T ss_dssp -CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred -chhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 22222222 222232222222222222221121 22 234677788999999999999999999999888765444
Q ss_pred H
Q 012879 418 V 418 (454)
Q Consensus 418 ~ 418 (454)
.
T Consensus 247 ~ 247 (259)
T d1xnfa_ 247 R 247 (259)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=7.6e-11 Score=102.02 Aligned_cols=143 Identities=10% Similarity=-0.031 Sum_probs=81.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC-chhHHHHHHHhhhhcCCCCchHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG-DVKSCQLIHGYGEKRGFTAFDIRVLNCLID 251 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 251 (454)
.++.+...+.+.+.+++|+.+++++++. .|-+...|+....++...| ++++|...++.+.+. .|.+..+|..+..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~ 120 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhH
Confidence 4555555666666667777777766663 2333445555555555544 356666666666554 3445666666666
Q ss_pred HHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 012879 252 TYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNA 320 (454)
Q Consensus 252 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 320 (454)
++.+.|++++|+..++++.+..| +...|..+...+.+.|++++|++.++++++..+. +...|+.+...
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~ 189 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFV 189 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHH
Confidence 66666666666666666665544 4556666666666666666666666666554322 33444443333
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.6e-10 Score=101.98 Aligned_cols=287 Identities=10% Similarity=-0.019 Sum_probs=175.9
Q ss_pred HHhcCCHHHHHHHHhhCCC--CC------cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCC----hhhHHhHHHHH
Q 012879 150 LVKWGELEFARSLFEEMPC--RN------VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPS----EITILAVLPAI 217 (454)
Q Consensus 150 ~~~~~~~~~A~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~ 217 (454)
+...|++++|++++++..+ |+ ..++..+..++...|++++|+..|++..+.....++ ...+..+...+
T Consensus 22 ~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (366)
T d1hz4a_ 22 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 101 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence 4455555555555544321 11 124455566666667777777777666542111111 23344555566
Q ss_pred HccCchhHHHHHHHhhhhc----C--CCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC------ChhhHHHHHHH
Q 012879 218 WQNGDVKSCQLIHGYGEKR----G--FTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK------NLVSWTSIISG 285 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~l~~~ 285 (454)
...|++..+...+...... + ..+.....+..+...+...|+++.+...+.......+ ....+......
T Consensus 102 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (366)
T d1hz4a_ 102 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 181 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH
Confidence 6777777777666655431 1 1111234556677788888888888888887765522 22344555566
Q ss_pred HHhcCChhHHHHHHHHHHhC----CCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCC--ChhHHHHHHHHH
Q 012879 286 FAMHGMGKEAVENFGRMQKV----GLKPN--RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLP--DIKHYGCLIDML 357 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 357 (454)
+...++...+...+.+.... +..+. ...+..+...+...|++++|...++...+...-.+ ....+..+..++
T Consensus 182 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 261 (366)
T d1hz4a_ 182 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 261 (366)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 77788888888877765431 11111 22345555667788899999888887654311111 133455677888
Q ss_pred HhcCChHHHHHHHhcCCCC------CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC---------CcHHHHH
Q 012879 358 GRAGRLEQAEKTALGIPSE------IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG---------GDYVLMY 421 (454)
Q Consensus 358 ~~~g~~~~A~~~~~~~~~~------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------~~~~~l~ 421 (454)
...|++++|.+.++++... .| ...++..+...|...|++++|.+.++++++..+... .....++
T Consensus 262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~ 341 (366)
T d1hz4a_ 262 ILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQL 341 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHH
Confidence 8999999998888876532 22 345677888899999999999999999988765422 1234455
Q ss_pred HHHHhcCCcCcHHHH
Q 012879 422 NILAGVGRFGDAERL 436 (454)
Q Consensus 422 ~~~~~~g~~~~a~~~ 436 (454)
..+...++.+++.+-
T Consensus 342 ~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 342 RQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHTTCSCHHHHH
T ss_pred HHHHhcCCChHHHHH
Confidence 666777888877654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.30 E-value=6.1e-10 Score=96.21 Aligned_cols=193 Identities=9% Similarity=-0.065 Sum_probs=136.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHhhCCC--C-CcchHHHHHHHHHhcC-ChHHHHHHHHHHHHccCCCCChhhHHhHHHHH
Q 012879 142 TWNVMITGLVKWGELEFARSLFEEMPC--R-NVVSWTGIIDGYTRMN-RSNEALALFRKMVACEYTEPSEITILAVLPAI 217 (454)
Q Consensus 142 ~~~~ll~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (454)
.++.+...+.+.+.+++|+++++.+.+ | +...|+....++...| ++++|+..+++..+ ..+-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHHhHHH
Confidence 566666677778888888888887764 3 3456777777777765 47888888888877 3455677788888888
Q ss_pred HccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCC-----
Q 012879 218 WQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGM----- 291 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~----- 291 (454)
.+.|++++|...++.+.+. .|.+..+|..+..++...|++++|+..|+++.+..| +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhh
Confidence 8888888888888888886 566788888888888888888888888888887766 66677777666665554
Q ss_pred -hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 292 -GKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 292 -~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
+++|++.+.+..+.. +.+...|..+...+.. ...+++.+.++...+.
T Consensus 201 ~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 456777777766653 2245555555544443 3345666666666544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=7.1e-10 Score=95.68 Aligned_cols=221 Identities=7% Similarity=-0.052 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHccCCCCChhhHHhHHHHHHc--------------cCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 188 NEALALFRKMVACEYTEPSEITILAVLPAIWQ--------------NGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 188 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
+.+..+|+++... .+.+...|...+..+.. .+..+.+..++++..+.. .|.+...+...+..+
T Consensus 33 ~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~-~p~~~~l~~~ya~~~ 109 (308)
T d2onda1 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL-LKKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT-TTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHc-CCCCHHHHHHHHHHH
Confidence 4566677777763 34455555555444322 233577888999888753 455778888899999
Q ss_pred HhcCChhHHHHHHHHhhhcCC-C-hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH-HHhcCCChHHH
Q 012879 254 AKCGCIFSASKLFEDISVERK-N-LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLN-ACSHGGLVEEG 330 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-~~~~~~~~~~a 330 (454)
.+.|+++.|..+|+++....| + ..+|...+..+.+.|+.+.|.++|+++.+.+.. +...|..... -+...|+.+.|
T Consensus 110 ~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 110 ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred HhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHH
Confidence 999999999999999888755 3 346888889999999999999999999886533 3333333332 23456889999
Q ss_pred HHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC---CCc--HhHHHHHHHHHHcCCChhHHHHHHHH
Q 012879 331 LNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE---ITD--VVVWRTLLGACSFHGNVEMGERVTRK 405 (454)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 405 (454)
..+|+.+.+. .+.+...+...++.+.+.|+++.|..+|++.... .|+ ...|...+.--...|+.+.+..+.++
T Consensus 189 ~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r 266 (308)
T d2onda1 189 FKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999885 3445778889999999999999999999987655 222 34788888877888999999999999
Q ss_pred HHHhhcCCC
Q 012879 406 ILEMERGYG 414 (454)
Q Consensus 406 ~~~~~~~~~ 414 (454)
+.+.-|...
T Consensus 267 ~~~~~~~~~ 275 (308)
T d2onda1 267 RFTAFREEY 275 (308)
T ss_dssp HHHHTTTTT
T ss_pred HHHHCcccc
Confidence 988877643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.26 E-value=2.3e-11 Score=106.76 Aligned_cols=233 Identities=6% Similarity=-0.118 Sum_probs=172.2
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC--chhHHHHHHHhhhhcCCCCchHHHH-HHHHHHHHhcCC
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG--DVKSCQLIHGYGEKRGFTAFDIRVL-NCLIDTYAKCGC 258 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~ 258 (454)
...|++++|+.+++...+ ..+-+...|..+..++...+ +++.+...++.+.+. .|.+...+ ......+...+.
T Consensus 84 ~~~~~~~~al~~~~~~l~--~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~ 159 (334)
T d1dcea1 84 ESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVA 159 (334)
T ss_dssp HHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHH--hCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhh--CchhhhhhhhHHHHHHHhccc
Confidence 344567788888888877 34556666777766666655 478888888888886 34455554 445577778899
Q ss_pred hhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 259 IFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 259 ~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
+++|+..++.+....| +...|+.+...+.+.|++++|...+....+. .|+. ..+...+...+..+++...+...
T Consensus 160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~ 234 (334)
T d1dcea1 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRW 234 (334)
T ss_dssp HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHH
Confidence 9999999999888876 6778888888999999888876665544332 1221 12223344556677788888877
Q ss_pred HHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCc
Q 012879 338 VEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGD 416 (454)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 416 (454)
... .+++...+..+...+...|+..+|...+.+.....| +..++..+..++...|++++|++.++++++.+|.....
T Consensus 235 l~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y 312 (334)
T d1dcea1 235 LLG--RAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY 312 (334)
T ss_dssp HHS--CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHh--CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHH
Confidence 763 344555666777788889999999999999888755 45678889999999999999999999999999987777
Q ss_pred HHHHHHHHH
Q 012879 417 YVLMYNILA 425 (454)
Q Consensus 417 ~~~l~~~~~ 425 (454)
|..+...+.
T Consensus 313 ~~~L~~~~~ 321 (334)
T d1dcea1 313 LDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=3.6e-10 Score=97.61 Aligned_cols=217 Identities=8% Similarity=-0.068 Sum_probs=167.3
Q ss_pred hHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh--------------cCChhHHHHHHHHhhhc-CC-ChhhHHHHHHHHH
Q 012879 224 KSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK--------------CGCIFSASKLFEDISVE-RK-NLVSWTSIISGFA 287 (454)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------~g~~~~a~~~~~~~~~~-~~-~~~~~~~l~~~~~ 287 (454)
+.+..+|+++... .|.++.+|...+..+.. .+..++|..+|++..+. .| +...|...+....
T Consensus 33 ~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~ 110 (308)
T d2onda1 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4466677777775 45567777666554432 23457889999998764 34 5667888888899
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHH-HHhcCChHHH
Q 012879 288 MHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDM-LGRAGRLEQA 366 (454)
Q Consensus 288 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A 366 (454)
..|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|+.+.+. .+.+...|...... +...|+.+.|
T Consensus 111 ~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a 188 (308)
T d2onda1 111 SRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhccCHHHH
Confidence 99999999999999988644444567888899999999999999999999874 22334444444433 3446899999
Q ss_pred HHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCC----cHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 367 EKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGG----DYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 367 ~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
..+|+.+... +.+...|...++.+...|+.+.|..+|+++++..|.++. .|...+......|+.+.+..+.+++.
T Consensus 189 ~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999998877 446788999999999999999999999999997765443 57778888888999999999999886
Q ss_pred hcc
Q 012879 442 ERN 444 (454)
Q Consensus 442 ~~~ 444 (454)
+.-
T Consensus 269 ~~~ 271 (308)
T d2onda1 269 TAF 271 (308)
T ss_dssp HHT
T ss_pred HHC
Confidence 643
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.26 E-value=1.5e-11 Score=103.64 Aligned_cols=220 Identities=10% Similarity=-0.051 Sum_probs=153.2
Q ss_pred chhHHHHHHHhhhhcCC--CCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHH
Q 012879 222 DVKSCQLIHGYGEKRGF--TAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVEN 298 (454)
Q Consensus 222 ~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~ 298 (454)
+.+.+..-++++..... .+....++..+..+|.+.|++++|+..|++.....| ++.+|+.+..+|.+.|++++|+..
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 34455555556554321 122445788889999999999999999999998877 778999999999999999999999
Q ss_pred HHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC
Q 012879 299 FGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT 378 (454)
Q Consensus 299 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 378 (454)
|+++.+... -+..++..+..++...|++++|...|+...+. . +.+......+..++.+.+..+.+..+........+
T Consensus 94 ~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 94 FDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999998642 24567888888999999999999999999875 2 23444444444555555655544444333222211
Q ss_pred cHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 379 DVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 379 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
....+. ++..+.. .+..+.+...+.......|....+|..++..+...|++++|.+.+++....++
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 222222 2222222 22344555555555555666667888899999999999999999999887654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=1.5e-10 Score=101.42 Aligned_cols=259 Identities=7% Similarity=-0.052 Sum_probs=150.3
Q ss_pred CchhHHHHHHHHhhhhhhhhhhhHHHHHHH---H-------HccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHH
Q 012879 11 NNITTQIHSHLLTTNSLLHHSQLFNTLLHF---Y-------SLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFL 80 (454)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~-------~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l 80 (454)
.+.+..+++.+.+..| -+...|+..-.. + ...|.+++|+.+++.+. ...++ +...|..+
T Consensus 45 ~~~al~~~~~~l~~~P--~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l---~~~pk------~~~~~~~~ 113 (334)
T d1dcea1 45 DESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCL---RVNPK------SYGTWHHR 113 (334)
T ss_dssp SHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH---HHCTT------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHH---HhCCC------cHHHHHHh
Confidence 3566666666666665 333444332222 2 22334567777777776 55544 56666666
Q ss_pred HHHHhccCC--cchHhHHHHHHHHcCCCCCchhHH-HHHHHHHhCCChhHHHHHHhhCCC---CCchhHHHHHHHHHhcC
Q 012879 81 IRTCATLSH--PNLGTQLHAVISKVGFQSHVYVNT-ALVNMYVSLGFLKDSSKLFDEMPE---RNLVTWNVMITGLVKWG 154 (454)
Q Consensus 81 ~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~ll~~~~~~~ 154 (454)
..++...++ +++|...++.+.+.. +++...+. .....+...+.+++|+..++.+.+ .+..+|+.+...+.+.|
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~ 192 (334)
T d1dcea1 114 CWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH 192 (334)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred hHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 666555543 567777777776654 33444433 334556666777777777777765 23456666667777777
Q ss_pred CHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhh
Q 012879 155 ELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGE 234 (454)
Q Consensus 155 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (454)
++++|...+....+-.+.. ......+...+..+++...+..... ..+++...+..+...+...++.+.+...+.+..
T Consensus 193 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 193 PQPDSGPQGRLPENVLLKE-LELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CCCCSSSCCSSCHHHHHHH-HHHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhHHhHHHH-HHHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 7766655554433211111 1233344555666667666666665 334555556666666666677777777776666
Q ss_pred hcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHH
Q 012879 235 KRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIISGF 286 (454)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~ 286 (454)
+. .|.+..++..+..+|...|++++|.+.|+++.+..|+ ...|+.+...+
T Consensus 270 ~~--~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 270 PE--NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 320 (334)
T ss_dssp TT--CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred hh--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence 64 3445666666777777777777777777777666553 33444444333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=3.3e-07 Score=72.23 Aligned_cols=84 Identities=11% Similarity=-0.072 Sum_probs=43.8
Q ss_pred HHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHH
Q 012879 149 GLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQL 228 (454)
Q Consensus 149 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 228 (454)
.+...|++++|++.|+++..+++.+|..+..+|...|++++|++.|++.++. .+.+...|..+..++.+.|+++.|..
T Consensus 14 ~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHHHH
Confidence 3445555666666665555555555555555566666666666666555552 22333444444444444444444444
Q ss_pred HHHhhh
Q 012879 229 IHGYGE 234 (454)
Q Consensus 229 ~~~~~~ 234 (454)
.|++..
T Consensus 92 ~~~kAl 97 (192)
T d1hh8a_ 92 DLKEAL 97 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=5.4e-07 Score=76.37 Aligned_cols=200 Identities=13% Similarity=-0.026 Sum_probs=90.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcc---CCCC-ChhhHHhHHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHH
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACE---YTEP-SEITILAVLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNC 248 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~ 248 (454)
....|...|++++|.+.|.+..+.. +.++ -..+|..+..+|.+.|++++|.+.++...+. |.......++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 3455666666666666666554420 1111 1234555555555556666555555544332 111112334444
Q ss_pred HHHHHHh-cCChhHHHHHHHHhhhc---CCC----hhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----cH-HHH
Q 012879 249 LIDTYAK-CGCIFSASKLFEDISVE---RKN----LVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKP-----NR-VTF 314 (454)
Q Consensus 249 l~~~~~~-~g~~~~a~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-----~~-~~~ 314 (454)
+...|.. .|++++|+..|++.... ..+ ..++..+...+...|++++|...|+++....... .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 5555533 46666666666655432 111 1234555556666666666666666655431110 10 112
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC---hhHHHHHHHHHHh--cCChHHHHHHHhcCCCC
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPD---IKHYGCLIDMLGR--AGRLEQAEKTALGIPSE 376 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~ 376 (454)
...+..+...|+++.|...++...+...--++ ......++.++.. .+.+++|+..|+++...
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l 269 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence 22233344456666666666655432000011 1123334444433 23455666666555543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=1.9e-07 Score=79.34 Aligned_cols=196 Identities=9% Similarity=-0.083 Sum_probs=131.2
Q ss_pred HHHHHHccCchhHHHHHHHhhhhc----CCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhc---CCC----hhhHHH
Q 012879 213 VLPAIWQNGDVKSCQLIHGYGEKR----GFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVE---RKN----LVSWTS 281 (454)
Q Consensus 213 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~----~~~~~~ 281 (454)
....|...+++++|.+.|.++.+. +..+....+|..+..+|.+.|++++|.+.+++.... ..+ ..++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 345678888999999998888763 222223467888899999999999999999887654 122 335556
Q ss_pred HHHHHHh-cCChhHHHHHHHHHHh----CCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCCh-----hHH
Q 012879 282 IISGFAM-HGMGKEAVENFGRMQK----VGLKPN-RVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDI-----KHY 350 (454)
Q Consensus 282 l~~~~~~-~g~~~~A~~~~~~m~~----~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~ 350 (454)
+...|.. .|++++|++.+++..+ .+.++. ..++..+...+...|++++|...|+++.....-.+.. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 6666644 6999999999988754 222221 3456778888999999999999999987752111111 223
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCCc------HhHHHHHHHHHHc--CCChhHHHHHHHHHHH
Q 012879 351 GCLIDMLGRAGRLEQAEKTALGIPSEITD------VVVWRTLLGACSF--HGNVEMGERVTRKILE 408 (454)
Q Consensus 351 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~ 408 (454)
...+.++...|+++.|...+++.....|. ......++.++.. .+.+++|+..|+++.+
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 44555677889999999999988776332 2244556666554 2346677776665443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.77 E-value=2.3e-08 Score=79.97 Aligned_cols=108 Identities=9% Similarity=-0.101 Sum_probs=79.7
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHH
Q 012879 309 PNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLL 387 (454)
Q Consensus 309 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~ 387 (454)
|+...+......+.+.|++++|+..|+.+.+. -+.+...|..+..+|.+.|++++|+..|++.....| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 55666666677777888888888888877764 234566777778888888888888888888777644 466777788
Q ss_pred HHHHcCCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 388 GACSFHGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 388 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
.+|...|++++|+..|+++++..|.+...+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~ 110 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHH
Confidence 8888888888888888888887776544433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.75 E-value=5.8e-09 Score=83.62 Aligned_cols=101 Identities=9% Similarity=-0.085 Sum_probs=92.0
Q ss_pred CChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 345 PDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
|+...+......|.+.|++++|+..|+++... +.+...|..+..+|.+.|++++|+..++++++..|.+..+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 67777788889999999999999999998776 44678899999999999999999999999999999999999999999
Q ss_pred HHhcCCcCcHHHHHHHHhhccc
Q 012879 424 LAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
|.+.|++++|...+++..+...
T Consensus 82 ~~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999877543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.74 E-value=2.6e-08 Score=71.63 Aligned_cols=104 Identities=13% Similarity=0.032 Sum_probs=67.7
Q ss_pred HHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCCh
Q 012879 318 LNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNV 396 (454)
Q Consensus 318 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~ 396 (454)
...+...|++++|+..|+...+. -+.+...|..+..+|...|++++|+..+++.... +.+...|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 34455667777777777777654 2334556666667777777777777777666654 34566677777777777777
Q ss_pred hHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 397 EMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 397 ~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
++|+..++++++..|.++..+..+..+
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777666555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.68 E-value=8.1e-06 Score=67.86 Aligned_cols=95 Identities=12% Similarity=-0.103 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhhcCCCCcHH
Q 012879 347 IKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEMERGYGGDYV 418 (454)
Q Consensus 347 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~ 418 (454)
...+..+...|.. ..+...+..+++...+. .+......+...|.. ..++++|+..|+++.+.+ ++..+.
T Consensus 142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~ 218 (265)
T d1ouva_ 142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCF 218 (265)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred cchhhhhhhhhccCCCcccccccchhhhhccccc-cccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHH
Confidence 3344444444443 23344444444443332 234444444444433 346666666666665543 344555
Q ss_pred HHHHHHHh----cCCcCcHHHHHHHHhhcc
Q 012879 419 LMYNILAG----VGRFGDAERLRRVMDERN 444 (454)
Q Consensus 419 ~l~~~~~~----~g~~~~a~~~~~~~~~~~ 444 (454)
.|+.+|.+ ..+.++|.+.|++..+.|
T Consensus 219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 66666654 235666666666665554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=5.4e-07 Score=64.49 Aligned_cols=93 Identities=8% Similarity=-0.070 Sum_probs=45.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
...+...|++++|+..|++.++ ..|.+...|..+..++...|++++|...+....+. .|.++..|..+..++...|
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~g~~~~~~~ 85 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKAAALEFLN 85 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHh--ccchhhHHHHHHHHHHHcc
Confidence 3445555555555555555554 22333444444444445555555555555544443 2334444444455555555
Q ss_pred ChhHHHHHHHHhhhcCC
Q 012879 258 CIFSASKLFEDISVERK 274 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~ 274 (454)
++++|+..|++..+..|
T Consensus 86 ~~~~A~~~~~~a~~~~p 102 (117)
T d1elwa_ 86 RFEEAKRTYEEGLKHEA 102 (117)
T ss_dssp CHHHHHHHHHHHHTTCT
T ss_pred CHHHHHHHHHHHHHhCC
Confidence 55555555554444433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.65 E-value=7.7e-08 Score=73.54 Aligned_cols=118 Identities=11% Similarity=-0.033 Sum_probs=91.5
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCC
Q 012879 317 VLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGN 395 (454)
Q Consensus 317 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 395 (454)
....|.+.|++++|...|+++.+. . +.+...|..+..+|...|++++|.+.|+++.+..| +..+|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~-~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL-N-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc-c-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677889999999999988875 2 34577788888899999999999999998877634 56788889999999999
Q ss_pred hhHHHHHHHHHHHhhcCCCCcHHHHHHHH--HhcCCcCcHHHH
Q 012879 396 VEMGERVTRKILEMERGYGGDYVLMYNIL--AGVGRFGDAERL 436 (454)
Q Consensus 396 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~ 436 (454)
+++|+..++++++..|.++..+..+..+. .+.+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999988877776665553 333445555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.63 E-value=1.7e-08 Score=71.98 Aligned_cols=90 Identities=8% Similarity=-0.150 Sum_probs=80.2
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCc
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRF 430 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (454)
.+...+.+.|++++|...|++.....| +..+|..+..++.+.|++++|+..++++++..|.+..++..++.+|...|++
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCH
Confidence 456678889999999999998877745 5788999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHh
Q 012879 431 GDAERLRRVMD 441 (454)
Q Consensus 431 ~~a~~~~~~~~ 441 (454)
++|.+.+++..
T Consensus 101 ~~A~~~l~~~l 111 (112)
T d1hxia_ 101 NAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998863
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=1.4e-06 Score=68.54 Aligned_cols=87 Identities=11% Similarity=-0.067 Sum_probs=46.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHH
Q 012879 250 IDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEE 329 (454)
Q Consensus 250 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 329 (454)
...+...|+++.|++.|.++.. |+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..++.+.|++++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~--~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQD--PHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 3344555555555555555433 455555555555555555555555555555532 1234455555555555555555
Q ss_pred HHHHHHHHHH
Q 012879 330 GLNFFDKMVE 339 (454)
Q Consensus 330 a~~~~~~~~~ 339 (454)
|.+.|+....
T Consensus 89 A~~~~~kAl~ 98 (192)
T d1hh8a_ 89 AIKDLKEALI 98 (192)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=9.6e-07 Score=67.21 Aligned_cols=93 Identities=9% Similarity=-0.025 Sum_probs=45.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcC
Q 012879 178 IDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCG 257 (454)
Q Consensus 178 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 257 (454)
...|.+.|++++|+..|++..+. .+.+...|..+..++...|+++.|...|+.+.+. .|.+..++..++.++...|
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~p~~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH--cccchHHHHHHHHHHHHcC
Confidence 34455555555555555555542 2333444444444455555555555555554443 2334444444555555555
Q ss_pred ChhHHHHHHHHhhhcCC
Q 012879 258 CIFSASKLFEDISVERK 274 (454)
Q Consensus 258 ~~~~a~~~~~~~~~~~~ 274 (454)
++++|...|++.....|
T Consensus 93 ~~~eA~~~~~~a~~~~p 109 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKP 109 (159)
T ss_dssp CHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 55555555554444433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.4e-07 Score=67.89 Aligned_cols=107 Identities=12% Similarity=-0.170 Sum_probs=84.0
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCCCcH---hHHHHHHH
Q 012879 315 LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRL---EQAEKTALGIPSEITDV---VVWRTLLG 388 (454)
Q Consensus 315 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~p~~---~~~~~l~~ 388 (454)
..+++.+...+++++|.+.|+..... -+.+..++..+..++.+.++. ++|+++++++....|+. .++..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 45677778888999999999999875 234677888888888875554 56999999988764433 36788999
Q ss_pred HHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 389 ACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 389 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
+|.+.|++++|++.|+++++.+|.+..+......+
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I 115 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI 115 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 99999999999999999999999987665544433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=2.9e-07 Score=70.96 Aligned_cols=86 Identities=8% Similarity=-0.140 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.+|..+..+|.+.|++++|+..+++.....| ++.+|..+..+|...|++++|+..|+++++.+|.++.+...+..+..+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 3567788889999999999999998887744 788899999999999999999999999999999988888888777766
Q ss_pred cCCcCcH
Q 012879 427 VGRFGDA 433 (454)
Q Consensus 427 ~g~~~~a 433 (454)
.+...+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.50 E-value=4.8e-05 Score=62.97 Aligned_cols=226 Identities=11% Similarity=-0.051 Sum_probs=149.1
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc----cCchhHHHHHHHhhhhcCCCCchHHH
Q 012879 170 NVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ----NGDVKSCQLIHGYGEKRGFTAFDIRV 245 (454)
Q Consensus 170 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 245 (454)
|+..+..|...+...+++++|++.|++..+. | +...+..|...+.. ..+...+...+....+.+ ++..
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~----~~~a 72 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-K---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNG 72 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc----ccch
Confidence 3455666777777888888888888888775 3 44555566666654 557788888888877765 3444
Q ss_pred HHHHHHHHHh----cCChhHHHHHHHHhhhcCCChhhHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 012879 246 LNCLIDTYAK----CGCIFSASKLFEDISVERKNLVSWTSIISGFAM----HGMGKEAVENFGRMQKVGLKPNRVTFLSV 317 (454)
Q Consensus 246 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 317 (454)
...+...+.. ..+.+.|...++......+ ......+...+.. ......+...+......+ +...+..+
T Consensus 73 ~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 73 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY-AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hhccccccccccccchhhHHHHHHHhhhhhhhh-hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 4555554443 4567788888887766433 2233333333332 345667777777666543 44555556
Q ss_pred HHHHhc----CCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHhcCCCCCCcHhHHHHHHHH
Q 012879 318 LNACSH----GGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQAEKTALGIPSEITDVVVWRTLLGA 389 (454)
Q Consensus 318 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~ 389 (454)
...+.. ..+...+..+++...+. + +......+...|.. ..++++|..+|++..+. -++..+..|...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~~~a~~~LG~~ 223 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAM 223 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-cCHHHHHHHHHH
Confidence 655553 45677777887877664 3 45555556656654 56899999999887665 356666777777
Q ss_pred HHc----CCChhHHHHHHHHHHHhhcC
Q 012879 390 CSF----HGNVEMGERVTRKILEMERG 412 (454)
Q Consensus 390 ~~~----~g~~~~A~~~~~~~~~~~~~ 412 (454)
|.. ..+.++|.+.|+++.+.|..
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 765 34899999999999888754
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.44 E-value=0.00032 Score=59.33 Aligned_cols=135 Identities=11% Similarity=0.035 Sum_probs=69.2
Q ss_pred ChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHh
Q 012879 73 DSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVK 152 (454)
Q Consensus 73 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 152 (454)
+..-...+...|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+++.+. .+..+|..+...+.+
T Consensus 13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~--~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVD 81 (336)
T ss_dssp ----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHH--TCHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 44445556666667777777777775432 2345666667777777776666544 344566666666666
Q ss_pred cCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC
Q 012879 153 WGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG 221 (454)
Q Consensus 153 ~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (454)
......|.- .......++.....++..|-..|.+++.+.+++.... ....+...++.++..+++.+
T Consensus 82 ~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~--~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 82 GKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc--CCccchHHHHHHHHHHHHhC
Confidence 665554422 1111223344445566677777777777777776653 23455556666666666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.39 E-value=1.6e-06 Score=61.42 Aligned_cols=88 Identities=11% Similarity=-0.079 Sum_probs=44.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhc
Q 012879 177 IIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKC 256 (454)
Q Consensus 177 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (454)
+...+.+.|++++|+..|++..+. .+-+...|..+..++.+.|++++|...++++.+. .|.+..++..+..+|...
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~la~~y~~~ 97 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNE 97 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccc--ccccchhhhhhhhhhhhhhhHHHhhccccccccc--ccccccchHHHHHHHHHC
Confidence 444555556666666666655542 2223444555555555555555555555555544 333445555555555555
Q ss_pred CChhHHHHHHHH
Q 012879 257 GCIFSASKLFED 268 (454)
Q Consensus 257 g~~~~a~~~~~~ 268 (454)
|++++|++.|++
T Consensus 98 g~~~~A~~~l~~ 109 (112)
T d1hxia_ 98 HNANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 555555555444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.9e-06 Score=61.81 Aligned_cols=98 Identities=8% Similarity=-0.066 Sum_probs=60.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCc---hhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGD---VKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+++.+...+++++|.+.|++... ..+.+..++..+..++.+.++ .++|..+++.+......|....++..+..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456666677777777777777766 334556666666666665443 345666666666543222113356666777
Q ss_pred HHhcCChhHHHHHHHHhhhcCCC
Q 012879 253 YAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
|.+.|++++|++.|+++.+..|+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhhHHHHHHHHHHHHhCcC
Confidence 77777777777777777666564
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.34 E-value=1.9e-06 Score=66.13 Aligned_cols=94 Identities=10% Similarity=-0.064 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.+|..+..+|.+.|++++|+..+++.... +.+..+|..+..++...|++++|+..|+++++.+|.+..+...+..+..+
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666788899999999999999988776 45678899999999999999999999999999999988888877777766
Q ss_pred cCCcCc-HHHHHHHHh
Q 012879 427 VGRFGD-AERLRRVMD 441 (454)
Q Consensus 427 ~g~~~~-a~~~~~~~~ 441 (454)
.+...+ ..+++..|-
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 654433 344444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.32 E-value=1.2e-06 Score=66.09 Aligned_cols=79 Identities=11% Similarity=-0.082 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHh
Q 012879 348 KHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAG 426 (454)
Q Consensus 348 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (454)
.+|..+..+|.+.|++++|++.++++... +.+..+|..+..++...|++++|+..|+++++..|.+..+...+..+..+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46677888888889999998888887766 34678888888999999999999999999999888887776666555433
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.29 E-value=1.4e-06 Score=67.06 Aligned_cols=85 Identities=5% Similarity=-0.138 Sum_probs=71.0
Q ss_pred ChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHH
Q 012879 346 DIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNIL 424 (454)
Q Consensus 346 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (454)
....+..+..+|.+.|++++|+..++++.+. +.+...|..+..++...|++++|++.|+++++..|.+..+...+..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456777888999999999999999998887 446788999999999999999999999999999999887777777666
Q ss_pred HhcCCc
Q 012879 425 AGVGRF 430 (454)
Q Consensus 425 ~~~g~~ 430 (454)
.+....
T Consensus 156 ~~l~~~ 161 (169)
T d1ihga1 156 QKIKAQ 161 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=8e-07 Score=64.74 Aligned_cols=90 Identities=14% Similarity=0.026 Sum_probs=48.3
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCC-CcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH-------HHHHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSEI-TDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY-------VLMYNI 423 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~l~~~ 423 (454)
.+...|.+.|++++|++.|++..+.. .+..++..+..+|.+.|++++|++.++++++..|.+...+ ..++..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555442 2345555556666666666666666666666555544332 233344
Q ss_pred HHhcCCcCcHHHHHHHHh
Q 012879 424 LAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~ 441 (454)
+...+++++|++.+++..
T Consensus 89 ~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 444555666666555543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.8e-05 Score=60.61 Aligned_cols=109 Identities=13% Similarity=-0.041 Sum_probs=62.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
+......+.+.|++++|+..|.+.++.....+... +.-..... +....+|+.+..+|
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~---------------~~~~~~~~--------~~~~~~~~nla~~y 72 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---------------NEEAQKAQ--------ALRLASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---------------SHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccc---------------hHHHhhhc--------hhHHHHHHHHHHHH
Confidence 34455677778888888888887766311111100 00000000 00223455566666
Q ss_pred HhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 254 AKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.+.|++++|+..++......| ++.++..+..+|...|++++|+..|++..+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 667777777777766666655 5566666666677777777777777766664
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.26 E-value=0.00062 Score=57.54 Aligned_cols=271 Identities=9% Similarity=0.004 Sum_probs=167.1
Q ss_pred CCchhHHHHHHHHHhCCChhHHHHHHhhCCCCCchhHHHHHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCC
Q 012879 107 SHVYVNTALVNMYVSLGFLKDSSKLFDEMPERNLVTWNVMITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNR 186 (454)
Q Consensus 107 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 186 (454)
||..-...+.+.|.+.|.++.|..++..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+....+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e 84 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKE 84 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcH
Confidence 4555556677888899999999999986644 7778888899999999999887654 56688888888888776
Q ss_pred hHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHH
Q 012879 187 SNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLF 266 (454)
Q Consensus 187 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 266 (454)
..-| ++... ....++.....++..|...|.++....+++..... .+.+...++.++.+|++.+ .++-.+.+
T Consensus 85 ~~la-----~i~~~-~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~--~~~~~~~~~~L~~lyak~~-~~kl~e~l 155 (336)
T d1b89a_ 85 FRLA-----QMCGL-HIVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFK-PQKMREHL 155 (336)
T ss_dssp HHHH-----HHTTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--TTCCHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHH-----HHHHH-HhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC--CccchHHHHHHHHHHHHhC-hHHHHHHH
Confidence 6543 22222 34456667778899999999999999999987653 4457888899999998864 34444555
Q ss_pred HHhhhc-CC--------ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHH
Q 012879 267 EDISVE-RK--------NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKM 337 (454)
Q Consensus 267 ~~~~~~-~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 337 (454)
...... .+ ....|.-++-.|.+.|+++.|..++- +. .++..-....+..+.+.++++...+.....
T Consensus 156 ~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i---~~--~~~~~~~~~f~e~~~k~~N~e~~~~~i~~y 230 (336)
T d1b89a_ 156 ELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMM---NH--PTDAWKEGQFKDIITKVANVELYYRAIQFY 230 (336)
T ss_dssp HHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHH---HS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHH
T ss_pred HhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHH---Hc--chhhhhHHHHHHHHHccCChHHHHHHHHHH
Confidence 443221 11 12236677788888888888876642 22 233333344555666667776666666655
Q ss_pred HHhcCCCCChhHHHHHHHHHH-------------hcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHH
Q 012879 338 VEECEVLPDIKHYGCLIDMLG-------------RAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTR 404 (454)
Q Consensus 338 ~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~ 404 (454)
.+. .|+ ..+.++.... +.+++.-...+++..... .+..+.+++...|...+|++.-....+
T Consensus 231 L~~---~p~--~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~-n~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 231 LEF---KPL--LLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNH-NNKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp HHH---CGG--GHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTT-CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHc---CHH--HHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHc-ChHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 543 232 2344444444 444444444444443332 345688899999999999765444443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=1.3e-07 Score=86.77 Aligned_cols=228 Identities=10% Similarity=-0.053 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHccCCCCC-hhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHH
Q 012879 189 EALALFRKMVACEYTEPS-EITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFE 267 (454)
Q Consensus 189 ~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 267 (454)
+|.+.|++..+. .|+ ...+..+...+...|+++++ ++++... .|.....++...... ...+..+.+.++
T Consensus 4 eA~q~~~qA~~l---~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~e~~Lw--~~~y~~~ie~~r 73 (497)
T d1ya0a1 4 QSAQYLRQAEVL---KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKVEQDLW--NHAFKNQITTLQ 73 (497)
T ss_dssp HHHHHHHHHHHH---HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTHHHHHH--HHHTHHHHHHHH
T ss_pred HHHHHHHHHHHc---CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhHHHHHH--HHHHHHHHHHHH
Confidence 678888888764 344 45666777777777777765 6666654 221122222111111 112455666666
Q ss_pred HhhhcC--CChhhHHHHHHHH--HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCC
Q 012879 268 DISVER--KNLVSWTSIISGF--AMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEV 343 (454)
Q Consensus 268 ~~~~~~--~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 343 (454)
...+.. ++..-.......+ ...+.++.|+..+....+.. +++...+..+...+.+.|+.+.|...+......
T Consensus 74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--- 149 (497)
T d1ya0a1 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--- 149 (497)
T ss_dssp HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH---
T ss_pred HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---
Confidence 665542 2222222222222 22344555554444433321 234456667777788888888888888776643
Q ss_pred CCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHH
Q 012879 344 LPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEIT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYN 422 (454)
Q Consensus 344 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 422 (454)
.| ..++..+...+...|++++|...|++.....| +...|+.|...+...|+..+|+..|.+++...|+.+.++..+..
T Consensus 150 ~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~ 228 (497)
T d1ya0a1 150 IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 12 35677788889999999999999998887755 45789999999999999999999999999998888888888988
Q ss_pred HHHhcCCcC
Q 012879 423 ILAGVGRFG 431 (454)
Q Consensus 423 ~~~~~g~~~ 431 (454)
.+.+..+..
T Consensus 229 ~~~~~~~~~ 237 (497)
T d1ya0a1 229 ALSKALESR 237 (497)
T ss_dssp HHHHHTTSC
T ss_pred HHHHhhhhh
Confidence 887765443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=8.7e-07 Score=81.20 Aligned_cols=268 Identities=9% Similarity=-0.043 Sum_probs=143.3
Q ss_pred HHHHHHhhCCC--CC-cchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhh
Q 012879 158 FARSLFEEMPC--RN-VVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGE 234 (454)
Q Consensus 158 ~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 234 (454)
+|.+.|++..+ |+ ...+..+..++...|++++| |+++... .|+...-......+. ...+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~~e~~Lw-~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKKVEQDLW-NHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHTHHHHHH-HHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHhHHHHHH-HHHHHHHHHHHHHhc
Confidence 56667766553 33 45667778888888888876 6776653 232211111111111 112445666666666
Q ss_pred hcCCCCchHHHHHHH-HHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH
Q 012879 235 KRGFTAFDIRVLNCL-IDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRV 312 (454)
Q Consensus 235 ~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 312 (454)
+....+........+ ...+...+.++.++..+....+..| +...+..+...+.+.|+.+.|...+....+.. ...
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~ 153 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQH 153 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHHH---HHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHH
Confidence 543333222222222 2223345667777776666555444 56677888888899999999998887766421 235
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CCcHhHHHHHHHHHH
Q 012879 313 TFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE-ITDVVVWRTLLGACS 391 (454)
Q Consensus 313 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~l~~~~~ 391 (454)
++..+...+...|++++|...|++..+. .+.+...|+.+...+...|+..+|...|.+.... .|-..++..|...+.
T Consensus 154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 154 CLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 6777888899999999999999999975 2345689999999999999999999999988776 677888888888776
Q ss_pred cCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 392 FHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 392 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
+..+..++..... ..+.....+..+...+...+..+...++.+++.
T Consensus 232 ~~~~~~~~~~~~~----~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~~ 277 (497)
T d1ya0a1 232 KALESRDEVKTKW----GVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLE 277 (497)
T ss_dssp HHTTSCCCCCSSC----CHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHHH
T ss_pred Hhhhhhhhhcccc----ccchHHHHHHHHHHHHHhCCchhhHHHHHHHHH
Confidence 5433221110000 000001133445555566677777766665543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.5e-05 Score=56.49 Aligned_cols=58 Identities=12% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhh
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEK 235 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 235 (454)
.+...+...|++++|+..|.+.++. .+.+...+..+..++.+.|+++.|...++++++
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~ 66 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE 66 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence 3444555555555555555555542 223344444444455555555555544444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.05 E-value=7.3e-06 Score=63.21 Aligned_cols=118 Identities=12% Similarity=-0.057 Sum_probs=79.6
Q ss_pred HHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhH
Q 012879 319 NACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDVVVWRTLLGACSFHGNVEM 398 (454)
Q Consensus 319 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 398 (454)
......|++++|.+.|......+.-.+-... ..+.+ +...-..+.. .....+..+..++...|++++
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~---------~~~~w--~~~~r~~l~~--~~~~a~~~la~~~~~~g~~~~ 85 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL---------RDFQF--VEPFATALVE--DKVLAHTAKAEAEIACGRASA 85 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG---------TTSTT--HHHHHHHHHH--HHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccccC---------cchHH--HHHHHHHHHH--HHHHHHHHHHHHHHHCCCchH
Confidence 4567788899998888888764211110000 00010 0000000100 134567778888999999999
Q ss_pred HHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhh-----cccccCC
Q 012879 399 GERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDE-----RNAFKVP 449 (454)
Q Consensus 399 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~ 449 (454)
|+..++++++..|.+...|..++.++.+.|+.++|++.|+++.. .|+.|.+
T Consensus 86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999988744 4666554
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.04 E-value=0.00012 Score=55.63 Aligned_cols=110 Identities=14% Similarity=-0.022 Sum_probs=66.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHH
Q 012879 173 SWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDT 252 (454)
Q Consensus 173 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 252 (454)
.+......+.+.|++++|+..|.+....-...+... .+.. ... .+....+|..+..+
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~--------------~~~~-~~~--------~~~~~~~~~Nla~~ 73 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLS--------------EKES-KAS--------ESFLLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCC--------------HHHH-HHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccc--------------hhhh-hhc--------chhHHHHHHhHHHH
Confidence 344556677778888888888877654211111100 0000 000 01123456667777
Q ss_pred HHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 253 YAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 253 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
|.+.|++++|+..+++.....| +..+|..+..++...|++++|...|++..+.
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777776655 5667777777777777777777777777764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=0.0001 Score=56.56 Aligned_cols=122 Identities=11% Similarity=0.142 Sum_probs=80.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh
Q 012879 176 GIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK 255 (454)
Q Consensus 176 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (454)
.........|++++|.+.|.+.+... +... +......+-+...-..+... ....+..++.++.+
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~---rG~~--------l~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~ 79 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREW---RGPV--------LDDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIA 79 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC---CSST--------TGGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhC---cccc--------cccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 34456778888999888888887631 1110 00001111111111222221 45567778888888
Q ss_pred cCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCcHHH
Q 012879 256 CGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQK-----VGLKPNRVT 313 (454)
Q Consensus 256 ~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 313 (454)
.|++++|+..++++....| +...|..++.+|...|+..+|++.|+++.+ .|+.|+..+
T Consensus 80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 8999999998888888776 777888888888888888888888888643 578887654
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.03 E-value=9.4e-05 Score=55.24 Aligned_cols=110 Identities=15% Similarity=0.057 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHH
Q 012879 174 WTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTY 253 (454)
Q Consensus 174 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 253 (454)
+..-...+.+.|++.+|+..|.+....-...++. .+.. ...... +....++..+..+|
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~---------------~~~~--~~~~~~-----~~~~~~~~Nla~~~ 77 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEW---------------DDQI--LLDKKK-----NIEISCNLNLATCY 77 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTC---------------CCHH--HHHHHH-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhh---------------hhHH--HHHhhh-----hHHHHHHhhHHHHH
Confidence 4445567777888888888888777531100000 0000 000000 01334566677777
Q ss_pred HhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 254 AKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 254 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
.+.|++++|++.++++....| ++.+|..+..++...|++++|+..|++..+.
T Consensus 78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766655 5667777777777777777777777777664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.01 E-value=6.6e-05 Score=57.24 Aligned_cols=66 Identities=9% Similarity=-0.038 Sum_probs=49.9
Q ss_pred CchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCC-ChhhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 012879 240 AFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERK-NLVSWTSIISGFAMHGMGKEAVENFGRMQKV 305 (454)
Q Consensus 240 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 305 (454)
|.....+..+..+|.+.|++++|+..++++.+..| ++..|..+..++...|++++|+..|++..+.
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 33556677777788888888888888888777655 5667777778888888888888888877774
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.85 E-value=5.4e-05 Score=55.97 Aligned_cols=95 Identities=6% Similarity=-0.010 Sum_probs=55.5
Q ss_pred HHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccC----------chhHHHHHHHhhhhcCCCCchHHHHHHHH
Q 012879 181 YTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNG----------DVKSCQLIHGYGEKRGFTAFDIRVLNCLI 250 (454)
Q Consensus 181 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 250 (454)
|-+.+.+++|+..|+...+ ..|.+..++..+..++...+ .+++|...++++.+. .|.+..+|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG 82 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIG 82 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHH
Confidence 3445567777788877776 34555666666666665433 345666666666665 455666666666
Q ss_pred HHHHhcCC-----------hhHHHHHHHHhhhcCCChhhH
Q 012879 251 DTYAKCGC-----------IFSASKLFEDISVERKNLVSW 279 (454)
Q Consensus 251 ~~~~~~g~-----------~~~a~~~~~~~~~~~~~~~~~ 279 (454)
.+|...|+ +++|.+.|++..+..|+...|
T Consensus 83 ~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~ 122 (145)
T d1zu2a1 83 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 122 (145)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHH
Confidence 66655432 344555555555444543333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.79 E-value=2.6e-05 Score=58.70 Aligned_cols=63 Identities=17% Similarity=0.025 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC-----------CcHHHHHHHHHhcCCcCcHHHHHHHHhhc
Q 012879 381 VVWRTLLGACSFHGNVEMGERVTRKILEMERGYG-----------GDYVLMYNILAGVGRFGDAERLRRVMDER 443 (454)
Q Consensus 381 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (454)
.+|+.+..+|...|++++|.+.++++++..+... .++..++.+|...|++++|.+.|++..+.
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4566677777777777777777777776554311 14566777788888888888887776553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.77 E-value=3.2e-05 Score=63.59 Aligned_cols=128 Identities=12% Similarity=0.012 Sum_probs=85.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCC-hhHHHHHHHHHHhcCChH
Q 012879 286 FAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPD-IKHYGCLIDMLGRAGRLE 364 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~ 364 (454)
..+.|++++|+..+++.++.. +-+...+..+...++..|++++|.+.++...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345688888888888888764 336677888888888888888888888888764 344 344444444444444444
Q ss_pred HHHHHHhcCCCC-CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 365 QAEKTALGIPSE-IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 365 ~A~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
++..-....... .| +...+......+...|+.++|.+.++++.+..|..+..+
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~ 136 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence 433322221111 23 344555566778889999999999999999988865443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.75 E-value=3.2e-05 Score=63.56 Aligned_cols=121 Identities=11% Similarity=-0.015 Sum_probs=65.8
Q ss_pred HccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC-hhhHHHHHHHHHhcCChhHHH
Q 012879 218 WQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKN-LVSWTSIISGFAMHGMGKEAV 296 (454)
Q Consensus 218 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~ 296 (454)
.+.|++++|...+++.++. .|.+...+..+...++..|++++|.+.|+...+..|+ ...+..+...+...+..+++.
T Consensus 7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence 3456666666666666665 4557777777777777777777777777777766553 333333333333222222221
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHh
Q 012879 297 ENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEE 340 (454)
Q Consensus 297 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 340 (454)
.-.......+-+++...+......+...|+.++|.+.++.+.+.
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111001111222233334445566677777777777777665
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.73 E-value=2.9e-05 Score=52.65 Aligned_cols=72 Identities=15% Similarity=0.019 Sum_probs=51.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCC-------CC-cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHH
Q 012879 352 CLIDMLGRAGRLEQAEKTALGIPSE-------IT-DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNI 423 (454)
Q Consensus 352 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 423 (454)
.+...+.+.|++++|...|++.... .+ ...++..+..++.+.|++++|+..++++++..|.++.++..+...
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~~~ 89 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLKYF 89 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 4555566666666666666554332 11 246788899999999999999999999999999988777766443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.70 E-value=1.9e-05 Score=58.46 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 395 NVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 395 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
++++|.+.|+++++..|.+...+..+... ..|.+++.++.+.|+
T Consensus 101 ~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 101 NFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred hHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 46889999999999999876555444444 466777777766654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.68 E-value=5.9e-05 Score=56.66 Aligned_cols=95 Identities=14% Similarity=-0.018 Sum_probs=60.4
Q ss_pred HHhcCCChHHHHHHHHHHHHhcCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHhcCCCC-------CC----
Q 012879 320 ACSHGGLVEEGLNFFDKMVEECEVLPD----------IKHYGCLIDMLGRAGRLEQAEKTALGIPSE-------IT---- 378 (454)
Q Consensus 320 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~p---- 378 (454)
.+...|++++|+..|++..+...-.|+ ...|+.+..+|.+.|++++|.+.+++.... .+
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 344456666666666665543221121 245566666777777777776666554321 11
Q ss_pred -cHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCC
Q 012879 379 -DVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYG 414 (454)
Q Consensus 379 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 414 (454)
...++..+..+|...|++++|++.|+++++..|...
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~ 134 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 134 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 123567788999999999999999999998877643
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.018 Score=51.05 Aligned_cols=272 Identities=10% Similarity=0.005 Sum_probs=153.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHc--cCch
Q 012879 146 MITGLVKWGELEFARSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQ--NGDV 223 (454)
Q Consensus 146 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~ 223 (454)
-+......|+...|..+...+...........+.... ++..+...... .+++......+..++.+ ..+.
T Consensus 160 R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~------~~~~~~~~~~~~~~l~rla~~d~ 230 (450)
T d1qsaa1 160 RIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART------TGATDFTRQMAAVAFASVARQDA 230 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH------SCCCHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc------CCCChhhhHHHHHHHHHHhccCh
Confidence 3444556677777777777665443334444444432 23333322211 12333333333333332 3467
Q ss_pred hHHHHHHHhhhhcCCCCchHHH---HHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHH
Q 012879 224 KSCQLIHGYGEKRGFTAFDIRV---LNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFG 300 (454)
Q Consensus 224 ~~a~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 300 (454)
+.+...+.......... .... ...+.......+..+.+...+........+.......+......+++..+...+.
T Consensus 231 ~~a~~~l~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~ 309 (450)
T d1qsaa1 231 ENARLMIPSLAQAQQLN-EDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLA 309 (450)
T ss_dssp HHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHhhhhccccc-HHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHH
Confidence 77888887776653222 2211 1222233334566777888877776655566665566666677789999988888
Q ss_pred HHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCCCCcH
Q 012879 301 RMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSEITDV 380 (454)
Q Consensus 301 ~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~ 380 (454)
.|... ..-...-.--+..++...|+.+.|..+|..+... ++ .|..|.. .+.|..-. +-..-....+..
T Consensus 310 ~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~----~~--fYG~LAa--~~Lg~~~~---~~~~~~~~~~~~ 377 (450)
T d1qsaa1 310 RLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----RG--FYPMVAA--QRIGEEYE---LKIDKAPQNVDS 377 (450)
T ss_dssp HSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----CS--HHHHHHH--HHTTCCCC---CCCCCCCSCCCC
T ss_pred hcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC----CC--hHHHHHH--HHcCCCCC---CCcCCCCccHHH
Confidence 77543 1223344456678888899999999999988642 33 3443322 22332100 000000001111
Q ss_pred -h---HHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHh
Q 012879 381 -V---VWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMD 441 (454)
Q Consensus 381 -~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (454)
. .-...+..+...|....|...+..+.+. .++.....++....+.|.++.|+....+..
T Consensus 378 ~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~--~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVKS--KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred hhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 0 1112356677889999999999888753 245566678888889999998888776654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=97.60 E-value=0.013 Score=52.02 Aligned_cols=304 Identities=9% Similarity=0.017 Sum_probs=149.0
Q ss_pred HhccCCcchHhHHHHHHHHcCCCCCchhHHHHHHHHHh--CCChhHHHHHHhhCCC-CCc-hhHHHHHHHHHhcCCHHHH
Q 012879 84 CATLSHPNLGTQLHAVISKVGFQSHVYVNTALVNMYVS--LGFLKDSSKLFDEMPE-RNL-VTWNVMITGLVKWGELEFA 159 (454)
Q Consensus 84 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~-~~~-~~~~~ll~~~~~~~~~~~A 159 (454)
..+.|+...+.++...+.. . | ...|...-..-.. ....++...++++-.. |-. ..-...+..+.+.++++..
T Consensus 16 a~~~~~~~~~~~~~~~L~d--y-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~ 91 (450)
T d1qsaa1 16 AWDNRQMDVVEQMMPGLKD--Y-P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGL 91 (450)
T ss_dssp HHHTTCHHHHHHHSGGGTT--S-T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHCCCHHHHHHHHhhhcC--C-C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHH
Confidence 4455666666655555422 1 1 2223222222222 2344555555544332 111 1122345566677777776
Q ss_pred HHHHhhCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHH------------------ccC
Q 012879 160 RSLFEEMPCRNVVSWTGIIDGYTRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIW------------------QNG 221 (454)
Q Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------------~~~ 221 (454)
+..+..-. .+...-.....+....|+.++|...+..+-..+...|+. ...+...+. ..|
T Consensus 92 ~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~--c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~ 168 (450)
T d1qsaa1 92 LAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNA--CDKLFSVWRASGKQDPLAYLERIRLAMKAG 168 (450)
T ss_dssp HHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchH--HHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 65554321 233333455666677777777777766665542333322 222222222 223
Q ss_pred chhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCChhhHHHHHHHHHh--cCChhHHHHHH
Q 012879 222 DVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFSASKLFEDISVERKNLVSWTSIISGFAM--HGMGKEAVENF 299 (454)
Q Consensus 222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~ 299 (454)
+...|..+...+- +.........+..... ...+....... .++......+..++.+ ..+.+.|..++
T Consensus 169 ~~~~a~~l~~~l~-----~~~~~~~~a~~~l~~~---p~~~~~~~~~~---~~~~~~~~~~~~~l~rla~~d~~~a~~~l 237 (450)
T d1qsaa1 169 NTGLVTVLAGQMP-----ADYQTIASAIISLANN---PNTVLTFARTT---GATDFTRQMAAVAFASVARQDAENARLMI 237 (450)
T ss_dssp CHHHHHHHHHTCC-----GGGHHHHHHHHHHHHC---GGGHHHHHHHS---CCCHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred ChhhHHHHHhhCC-----hhHHHHHHHHHHHHhC---hHhHHHHHhcC---CCChhhhHHHHHHHHHHhccChhHHHHHH
Confidence 3333333322211 1122222333322221 22222211111 1233333333333333 35778888888
Q ss_pred HHHHhCC-CCCcHHH-H-HHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 300 GRMQKVG-LKPNRVT-F-LSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 300 ~~m~~~~-~~p~~~~-~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
....... ..++... . ..+.......+..+.+..++...... ..+.......+......+++..+...++.+...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~ 314 (450)
T d1qsaa1 238 PSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (450)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred HhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc
Confidence 8776542 2222211 1 12223334556678888877776654 234444455566667788999999999988765
Q ss_pred CCc-HhHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 012879 377 ITD-VVVWRTLLGACSFHGNVEMGERVTRKILE 408 (454)
Q Consensus 377 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 408 (454)
... ..-.-=+..++...|+.+.|...|..+..
T Consensus 315 ~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 222 22223356778889999999999998763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.24 E-value=0.0013 Score=44.05 Aligned_cols=80 Identities=10% Similarity=-0.038 Sum_probs=61.2
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHHhcCCCCCCCCCCChhhHHHHHHHHhccCCcchHhHHHHHHHHcCCCCCchhH
Q 012879 33 LFNTLLHFYSLAESPQKAFLLYKQLQQIYTHSHSPLPPLFDSFTYSFLIRTCATLSHPNLGTQLHAVISKVGFQSHVYVN 112 (454)
Q Consensus 33 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 112 (454)
.+-.+...+.+.|++++|+..|++..++...... +......++..+..++.+.|++++|...++++++.. |-+..++
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~--~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~ 83 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEI--STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRAN 83 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC--CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhc--cCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHH
Confidence 3446788899999999999999999865555444 211135789999999999999999999999999875 3345555
Q ss_pred HHH
Q 012879 113 TAL 115 (454)
Q Consensus 113 ~~l 115 (454)
+.+
T Consensus 84 ~Nl 86 (95)
T d1tjca_ 84 GNL 86 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.84 E-value=0.014 Score=39.96 Aligned_cols=141 Identities=15% Similarity=0.052 Sum_probs=83.3
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHH
Q 012879 286 FAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQ 365 (454)
Q Consensus 286 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (454)
+.-.|..++..+++.+.... .+..-|+.++--....-+-+-..+.++.+-+-+.+.|-. -...++.+|...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~-Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQ-NLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCS-CTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhhh-cHHHHHHHHHHhcc---
Confidence 34467777777777776653 244555656654444555555666666654432222211 11233444443332
Q ss_pred HHHHHhcCCCCCCcHhHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcHHHHHHHHHhcCCcCcHHHHHHHHhhccc
Q 012879 366 AEKTALGIPSEITDVVVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDYVLMYNILAGVGRFGDAERLRRVMDERNA 445 (454)
Q Consensus 366 A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (454)
+...++..++.+..+|+-+.-.++.+.+.+.+..+++....++.+|.+.|...++.+++.+.-+.|+
T Consensus 85 -------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 85 -------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp -------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred -------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 2334455566667777777777777777666666666777777788888888888888777777776
Q ss_pred c
Q 012879 446 F 446 (454)
Q Consensus 446 ~ 446 (454)
+
T Consensus 152 K 152 (161)
T d1wy6a1 152 K 152 (161)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.16 E-value=0.087 Score=37.18 Aligned_cols=76 Identities=9% Similarity=-0.025 Sum_probs=33.7
Q ss_pred ChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHh----cCChhH
Q 012879 186 RSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAK----CGCIFS 261 (454)
Q Consensus 186 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 261 (454)
++++|+.+|++..+. +. ......+. .....+.++|...+++..+.| ++.....|...|.. ..+.++
T Consensus 8 d~~~A~~~~~kaa~~-g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g----~~~a~~~Lg~~y~~g~~~~~d~~~ 77 (133)
T d1klxa_ 8 DLKKAIQYYVKACEL-NE---MFGCLSLV--SNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRK 77 (133)
T ss_dssp HHHHHHHHHHHHHHT-TC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred CHHHHHHHHHHHHHC-CC---hhhhhhhc--cccccCHHHHHHHHhhhhccc----chhhhhhHHHhhhhccccchhhHH
Confidence 455666666666554 21 11111221 122334555555555555543 33334444444432 233445
Q ss_pred HHHHHHHhhh
Q 012879 262 ASKLFEDISV 271 (454)
Q Consensus 262 a~~~~~~~~~ 271 (454)
|.++|++..+
T Consensus 78 A~~~~~~aa~ 87 (133)
T d1klxa_ 78 AAQYYSKACG 87 (133)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhhc
Confidence 5555554443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.00 E-value=0.064 Score=37.92 Aligned_cols=110 Identities=13% Similarity=-0.034 Sum_probs=50.3
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGR----AGRLEQA 366 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 366 (454)
++++|+++|++..+.|... ....+. .....+.++|.++++...+. | ++.....|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~~---a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEMF---GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCTT---HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCChh---hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 4455666666655554221 111111 22334556666666665553 3 22333334433432 2345555
Q ss_pred HHHHhcCCCCCCcHhHHHHHHHHHHc----CCChhHHHHHHHHHHHhh
Q 012879 367 EKTALGIPSEITDVVVWRTLLGACSF----HGNVEMGERVTRKILEME 410 (454)
Q Consensus 367 ~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 410 (454)
.++|++..+. -++.....|...|.. ..|.++|.++++++.+.+
T Consensus 79 ~~~~~~aa~~-g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 79 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHhhhhcc-CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555554433 223333334444432 235566666666665544
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.87 E-value=0.14 Score=34.92 Aligned_cols=140 Identities=9% Similarity=-0.022 Sum_probs=75.0
Q ss_pred HhcCChHHHHHHHHHHHHccCCCCChhhHHhHHHHHHccCchhHHHHHHHhhhhcCCCCchHHHHHHHHHHHHhcCChhH
Q 012879 182 TRMNRSNEALALFRKMVACEYTEPSEITILAVLPAIWQNGDVKSCQLIHGYGEKRGFTAFDIRVLNCLIDTYAKCGCIFS 261 (454)
Q Consensus 182 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 261 (454)
...|..++..+++.+...+ .+..-|+.++--....-+-+...+.++.+-+.- | ...+++...
T Consensus 13 ildG~ve~Gveii~k~~~s----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F----D----------ls~C~Nlk~ 74 (161)
T d1wy6a1 13 LLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----D----------LDKCQNLKS 74 (161)
T ss_dssp HHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----C----------GGGCSCTHH
T ss_pred HHhhhHHhHHHHHHHHccc----CCccccceeeeecccccchHHHHHHHHHHhhhc----C----------chhhhcHHH
Confidence 3445555555555555543 334444444444444444444444444333220 0 012233333
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhc
Q 012879 262 ASKLFEDISVERKNLVSWTSIISGFAMHGMGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEEC 341 (454)
Q Consensus 262 a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 341 (454)
....+-.+- .+...++..++.+...|+-++-.++++.+.+.+ +|++.....+..+|-+.|+..++.+++.++.+.
T Consensus 75 vv~C~~~~n---~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~- 149 (161)
T d1wy6a1 75 VVECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK- 149 (161)
T ss_dssp HHHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-
T ss_pred HHHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-
Confidence 333332221 233445556667777777777777777766643 566667777777788888877777777777766
Q ss_pred CCC
Q 012879 342 EVL 344 (454)
Q Consensus 342 ~~~ 344 (454)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.50 E-value=0.041 Score=37.91 Aligned_cols=73 Identities=18% Similarity=0.019 Sum_probs=50.8
Q ss_pred CChhHHHHHHHHHHhcC---ChHHHHHHHhcCCCCCC-cH-hHHHHHHHHHHcCCChhHHHHHHHHHHHhhcCCCCcH
Q 012879 345 PDIKHYGCLIDMLGRAG---RLEQAEKTALGIPSEIT-DV-VVWRTLLGACSFHGNVEMGERVTRKILEMERGYGGDY 417 (454)
Q Consensus 345 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 417 (454)
++..+--...-++++.. +.++++.+++++....| +. ..+..|.-+|.+.|++++|.+.++++++..|.+..+.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~ 110 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 110 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence 44555555566666554 45678888887765444 32 4566777888888999999999999998888876543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.03 E-value=0.84 Score=31.14 Aligned_cols=69 Identities=13% Similarity=-0.024 Sum_probs=42.5
Q ss_pred CChhhHHhHHHHHHcc---CchhHHHHHHHhhhhcCCCCch-HHHHHHHHHHHHhcCChhHHHHHHHHhhhcCCC
Q 012879 205 PSEITILAVLPAIWQN---GDVKSCQLIHGYGEKRGFTAFD-IRVLNCLIDTYAKCGCIFSASKLFEDISVERKN 275 (454)
Q Consensus 205 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 275 (454)
|+..|--....++.++ .+.+.++.+++.+.+.+ |.+ ...+..|.-+|.+.|++++|.+.++.+.+..|+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4455545555555544 34456777777776642 323 345556666777777777777777777776664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.41 E-value=0.57 Score=30.13 Aligned_cols=63 Identities=14% Similarity=0.219 Sum_probs=46.5
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHhcCCCCChhHHHHHHH
Q 012879 291 MGKEAVENFGRMQKVGLKPNRVTFLSVLNACSHGGLVEEGLNFFDKMVEECEVLPDIKHYGCLID 355 (454)
Q Consensus 291 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 355 (454)
+.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++.++...+ ++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4456666777777777888888888888888888888888888888877533 33456665554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.06 E-value=0.87 Score=29.24 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=27.0
Q ss_pred ChHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHhcCChHHHHHHHhcCCCC
Q 012879 326 LVEEGLNFFDKMVEECEVLPDIKHYGCLIDMLGRAGRLEQAEKTALGIPSE 376 (454)
Q Consensus 326 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 376 (454)
+.-+..+-+..+... .+.|++.+..+-+++|.+.+++..|.++++.++.+
T Consensus 21 D~we~rrgmN~l~~~-DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 21 DAWELRKGMNTLVGY-DLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp CHHHHHHHHHHHTTS-SBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcc-ccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 334444444444433 45566666666666666666666666666555443
|