Citrus Sinensis ID: 012924

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450---
Protein Sequence
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPDPSRPRKSKRSKRKRAV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHccHHHccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHcccccccHHccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccc
Coil and Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlasTRVRLsfqeippilsldssidlnsvFSRTESLLYTLADAAVSldsasggaastsadgatqknggwfGFISEAMEFVLKILKDgidavhvpySYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRqagvnplagclptlatIPVWIGLYQALSNVaneglltegffwipslsgpttiaarqsgsgiswllpfvdghpplgwhdtaaYLVLPVLLVVSQYasmelmkppqtddpaqkntlLVFKFLPLMIGYfslsvpsglsiYWFTNNVLSTAQQVWLRKlggakpvvtENASEIITAGrakrsvsqpsragdrFRQLKEEEKGKKlnkalpaedvqtmnsasdsegesdgekgQGVLEEAYasnrskqvpdpsrprkskrskrkrav
Flexible Loop (DISEMBL)
mtktlissppfvgtplpspssslsrhglhrlpnrrlastrvRLSFQeippilsldssidLNSVFSRTESLLYTLADAAVSLDSASGGaastsadgatqkNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMkppqtddpaQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASeiitagrakrsvsqpsragdrfrqlkeeekgkklnkalpaedvqtmnsasdsegesdgEKGQGVLEEayasnrskqvpdpsrprkskrskrkrav
Low Complexity Region (SEG)
MTKTLISSPPFVGTplpspssslsrhglhrlpNRRLASTRVRLSFQEippilsldssidlNSVFSRTESLLYtladaavsldsasggaastsadgatQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYlvlpvllvvSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQlkeeekgkklnkalPAEDVQTMNSAsdsegesdgeKGQGVLEEAYASNRSKQVPDpsrprkskrskrkrAV
Disordered region (IsUnstruct)
***************************************RVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVS*******************NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASM**************NTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA**I*********************************************************************************************
Disordered Region (DISOPRED)
********PPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG****IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA********************VFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA********************************************************************************************************
Disordered Region (DISEMBL)
MTKTLISSPPFVGT************GLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLD*************ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT*****************FRQLKEEEKGKKLNKALPAEDV******************QGVLEEAY**************************
Disordered Region (DISPRO)
**********FVGTPLP*********GLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAK*******************************************************************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQGVLEEAYASNRSKQVPDPSRPRKSKRSKRKRAV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	453	2.2.26 [Sep-21-2011]
Q9FY06	442	Inner membrane protein PP	N/A	no	0.927	0.950	0.749	1e-176
Q8LBP4	462	Inner membrane protein AL	yes	no	0.843	0.826	0.753	1e-174
Q9FYL3	499	ALBINO3-like protein 1, c	no	no	0.763	0.693	0.586	1e-116
Q8LKI3	422	Inner membrane ALBINO3-li	N/A	no	0.609	0.654	0.565	1e-90
Q8S339	495	Inner membrane ALBINO3-li	N/A	no	0.582	0.533	0.574	5e-86
A0LLH3	553	Membrane protein insertas	yes	no	0.483	0.396	0.330	1e-33
B3QYV6	586	Membrane protein insertas	yes	no	0.481	0.372	0.337	2e-31
B2IDV5	604	Membrane protein insertas	yes	no	0.520	0.390	0.346	4e-30
O66103	622	Membrane protein insertas	yes	no	0.439	0.319	0.359	5e-30
C3LP77	541	Membrane protein insertas	yes	no	0.439	0.367	0.318	5e-30

>sp|Q9FY06|PPF1_PEA Inner membrane protein PPF-1, chloroplastic OS=Pisum sativum GN=PPF-1 PE=2 SV=2

 Score =  619 bits (1597), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 329/439 (74%), Positives = 363/439 (82%), Gaps = 19/439 (4%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRL--PNRRLASTRVRLSFQEIPPILSLDSSI 58
           M KTLISSP F+GTPLPS         LHR   PNR    T+V+ SF ++PPI S+  S+
Sbjct: 1   MAKTLISSPSFLGTPLPS---------LHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSV 51

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           DL+ +F+R E LLYTLADA V+        A+ S D A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 52  DLSGIFARAEGLLYTLADATVAA------DAAASTDVAAQKNGGWFGFISDGMEFVLKVL 105

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQ
Sbjct: 106 KDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQ 165

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 166 ERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 225

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PT+IAARQSGSGISWL PFVDGHP LGW+DTAAYLVLPVLL+VSQY SME+MKPPQT+DP
Sbjct: 226 PTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDP 285

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
            QKNTLL+FKFLPLMIGYFSLSVPSGL+IYWFTNNVLSTAQQVWLRKLGGAKP V ENA 
Sbjct: 286 NQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGAKPAVNENAG 345

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 417
            IITAG+AKRS S+P + G+RFRQLKEEEK KKL KALP E+VQ + SAS S   SD E 
Sbjct: 346 GIITAGQAKRSASKPEKGGERFRQLKEEEKKKKLIKALPVEEVQPLASASASNDGSDVEN 405

Query: 418 -KGQGVLEEAYASNRSKQV 435
            K Q V EE+  S  S++V
Sbjct: 406 NKEQEVTEESNTSKVSQEV 424

May be required for the insertion of some integral membrane proteins into the chloroplast thylakoid membrane. May play a role in inhibiting senescence.
Pisum sativum (taxid: 3888)

>sp|Q8LBP4|ALB3_ARATH Inner membrane protein ALBINO3, chloroplastic OS=Arabidopsis thaliana GN=ALB3 PE=1 SV=2

 Score =  610 bits (1574), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 300/398 (75%), Positives = 334/398 (83%), Gaps = 16/398 (4%)

Query: 16  LPSPSSSLSRHGL----------HRLPNRRL--ASTRVRLSFQEIPPILSLDSSIDLNSV 63
           L  PSSSL   G+          +R  N +L   ST VR S  EIPP   LDSS+D+ ++
Sbjct: 17  LIKPSSSLRHSGVGGGGTAQFLPYRSNNNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAI 76

Query: 64  FSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGID 123
           F+R ESLLYT+ADAAV        +  T+   A QK+GGWFGFIS+AME VLKILKDG+ 
Sbjct: 77  FTRAESLLYTIADAAV----VGADSVVTTDSSAVQKSGGWFGFISDAMELVLKILKDGLS 132

Query: 124 AVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 183
           AVHVPY+YGFAIILLT+IVK AT+PLTK+QVESTLAMQNLQPKIKAIQQRYAGNQERIQL
Sbjct: 133 AVHVPYAYGFAIILLTIIVKAATYPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQERIQL 192

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIA 243
           ETSRLY+QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGL TEGFFWIPSL GPT+IA
Sbjct: 193 ETSRLYKQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLFTEGFFWIPSLGGPTSIA 252

Query: 244 ARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNT 303
           ARQSGSGISWL PFVDGHPPLGW+DT AYLVLPVLL+ SQY SME+MKPPQTDDPAQKNT
Sbjct: 253 ARQSGSGISWLFPFVDGHPPLGWYDTVAYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNT 312

Query: 304 LLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITA 363
           LLVFKFLPLMIGYF+LSVPSGLSIYW TNNVLSTAQQV+LRKLGGAKP + ENAS+II+A
Sbjct: 313 LLVFKFLPLMIGYFALSVPSGLSIYWLTNNVLSTAQQVYLRKLGGAKPNMDENASKIISA 372

Query: 364 GRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDV 401
           GRAKRS++QP  AG+RFRQLKE+EK  K NKA+  + V
Sbjct: 373 GRAKRSIAQPDDAGERFRQLKEQEKRSKKNKAVAKDTV 410

Required for the insertion of some light harvesting chlorophyll-binding proteins (LHCP) into the chloroplast thylakoid membrane. Required for the insertion of LHCB1, LHCB4.1 and LHCB5 proteins into thylakoid membrane, while it is not required for insertion of proteins PsbX, PsbW and PsbY.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FYL3|ALB31_ARATH ALBINO3-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=ALB3L1 PE=2 SV=3

 Score =  420 bits (1080), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 223/380 (58%), Positives = 279/380 (73%), Gaps = 34/380 (8%)

Query: 68  ESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
           E+LLYT+ADAAVS        A T+    T ++  WF  I+  ME +LK+LKDG+  VHV
Sbjct: 63  ENLLYTIADAAVSSSETFESVAGTTTK--TTQSNDWFSGIANYMETILKVLKDGLSTVHV 120

Query: 128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
           PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct: 121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query: 188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
           LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct: 181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query: 248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVF 307
           GSGISWL PF++GHPPLGW DT AYLVLP+LLV SQY S+++M+  Q++DPA K++  V 
Sbjct: 241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVT 300

Query: 308 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAK----------------- 350
           K LPLMIGYF+LSVPSGLS+YW TNN+LSTAQQVWL+K GGAK                 
Sbjct: 301 KLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPVEKFTNLVTKEDKTQ 360

Query: 351 --------PVVTENASEI-ITAGRAKRSVS-QPSRAGDRFRQLKEEEKGKK-----LNKA 395
                   P+V ++ SE+ I   +    V+ +  + G+RFR LKE+E  ++       KA
Sbjct: 361 QIEKSFSEPLVQKSVSELKIPREKGGEKVTPECPKPGERFRLLKEQEAKRRREKEERQKA 420

Query: 396 LPAEDVQTMNSASDSEGESD 415
             A   Q  + A + + +SD
Sbjct: 421 EAALSNQNTDKAHEQDEKSD 440

Probably required for the insertion of integral membrane proteins into the chloroplast thylakoid membranes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LKI3|ALB32_CHLRE Inner membrane ALBINO3-like protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.2 PE=2 SV=1

 Score =  333 bits (854), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/297 (56%), Positives = 215/297 (72%), Gaps = 21/297 (7%)

Query: 97  TQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES 156
           T   GG    +++  EFVL+ L +G+++  +PYSYGFAII LTV+VKVATFPLT+KQVES
Sbjct: 67  TLAEGGPIDVLAQFFEFVLQTLDEGLESAKIPYSYGFAIIALTVLVKVATFPLTQKQVES 126

Query: 157 TLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQA 216
           TL++Q LQP++K +Q +YA + E +QLET+RLY++AGVNPLAGC PTLATIPV+IGLY A
Sbjct: 127 TLSLQALQPRVKELQAKYADDPENLQLETARLYKEAGVNPLAGCFPTLATIPVFIGLYNA 186

Query: 217 LSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLP 276
           LSN A EGLLTEGFFWIPSL GPTTI     G G+ WL+PF +G PP+GW + AAYLV+P
Sbjct: 187 LSNAAKEGLLTEGFFWIPSLGGPTTI-----GGGLEWLVPFENGAPPVGWANAAAYLVMP 241

Query: 277 VLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS 336
           VLLV SQYAS +++      DP+Q+    + KFLPLMIG+FSL+VPSGL++YWF NN+LS
Sbjct: 242 VLLVASQYASQKIISSQNNQDPSQQQAQAILKFLPLMIGWFSLNVPSGLTLYWFVNNLLS 301

Query: 337 TAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQLK-EEEKGKKL 392
           T QQ++L      K  V  N  E I A         P+ AG     +K +EE+ KK+
Sbjct: 302 TGQQLYL------KATVKVNIPEAIKA---------PATAGSSTPIVKPKEERVKKV 343

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.1.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q8S339|ALB31_CHLRE Inner membrane ALBINO3-like protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=ALB3.1 PE=3 SV=1

 Score =  318 bits (816), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 158/275 (57%), Positives = 212/275 (77%), Gaps = 11/275 (4%)

Query: 88  AASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATF 147
           A  ++A  A Q+ GGW   +++A+E VL  L++G+D +HVPYSYG++IILLT+IVK+ T+
Sbjct: 98  AVDSAAGAAPQRAGGWVAPVADALEQVLYALQEGLDKLHVPYSYGYSIILLTLIVKLLTY 157

Query: 148 PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATI 207
           PLTK+QVES +A+Q L+P+I  I+ R+  ++++IQ ETS LY QAGVNPLAGCLPTLATI
Sbjct: 158 PLTKQQVESAMAVQALKPRIDLIKDRFGEDKDKIQKETSVLYEQAGVNPLAGCLPTLATI 217

Query: 208 PVWIGLYQALSNVANEGLL-TEGFFWIPSLSGPTTIAARQSGSGISWLLPF-VDGHPPLG 265
           P++IGL+ +L+NVAN+GLL T+GF+++PSL+GPTT+A RQSG G SWL P   DG PP+G
Sbjct: 218 PIFIGLFSSLTNVANDGLLDTQGFYFVPSLAGPTTMAMRQSGLGTSWLWPLGPDGAPPIG 277

Query: 266 WHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKN-----TLLVFKFLPLMIGYFSLS 320
           W D AAYL LP+LLV  QYAS  +  PP   DP  +N      LLV  FLPLM+G+FSL+
Sbjct: 278 WEDAAAYLTLPLLLVAVQYASSSVTSPPI--DPKDENANTQRALLV--FLPLMVGWFSLN 333

Query: 321 VPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTE 355
           VP+GLS+Y+  N VLS+A Q++L+KLGGA  V+ E
Sbjct: 334 VPAGLSLYYLANTVLSSAIQIYLKKLGGANVVMNE 368

Required for the insertion of some light-harvesting complexes (LHC) proteins into the chloroplast thylakoid membrane. Essential for the assembly and activity of LHC I and II. Its function is probably partly distinct from that of ALB3.2.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|A0LLH3|YIDC_SYNFM Membrane protein insertase YidC OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=yidC PE=3 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 136/251 (54%), Gaps = 32/251 (12%)

Query: 96  ATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVE 155
           A+  + GWF FI++ + +VL             +++G AIILLT+++K+  +PLT+K  +
Sbjct: 332 ASAVDYGWFTFIAKPLVYVLDWF------YRYTHNWGVAIILLTIVIKILFWPLTQKSYQ 385

Query: 156 STLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQ 215
           S   M+ +QPK+  I+++Y G++E++  E   LYR   VNP+ GCLP L  IPV+  LY+
Sbjct: 386 SMQKMKKIQPKMTQIREKYKGDREKMNQELMGLYRTYKVNPMGGCLPMLLQIPVFFALYR 445

Query: 216 ALSNVANEGLLTEGF-FWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLV 274
            L+      L  E F  WI  L+ P  +        I + +P++ G P           V
Sbjct: 446 MLNGAVE--LRHEPFMLWIDDLTAPDRLP-------IGFDIPYLGGLP-----------V 485

Query: 275 LPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNV 334
           L +L+ ++ +   ++   P   DP Q   +++   +P+M   F ++ PSGL +YW  NNV
Sbjct: 486 LTLLMGITMFIQQKMT--PSAGDPRQDQIMMI---MPVMFTVFFVNFPSGLVLYWLVNNV 540

Query: 335 LSTAQQVWLRK 345
           LS AQQ W+ +
Sbjct: 541 LSIAQQYWVNR 551

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) (taxid: 335543)

>sp|B3QYV6|YIDC_CHLT3 Membrane protein insertase YidC OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=yidC PE=3 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/246 (33%), Positives = 133/246 (54%), Gaps = 28/246 (11%)

Query: 114 VLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR 173
           +   L + +D      SYG  IIL  + +K+ T+PLT    +S   M  LQP++KAIQ++
Sbjct: 359 IFNFLNNHVD------SYGVIIILFALFIKLVTYPLTMASTKSMKKMAALQPQLKAIQEQ 412

Query: 174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWI 233
           Y  N E++Q E S +YR+AGVNPL GCLPT+  +P+   ++    +     L  EGF W 
Sbjct: 413 YKDNPEKLQAEISGIYREAGVNPLGGCLPTVIQMPLLFAMFYVFRSSIQ--LRQEGFLWS 470

Query: 234 PSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPP 293
             LS P +I            LPF    P  G H +    V+P+L+ V+ +   +L    
Sbjct: 471 NDLSVPDSILD----------LPF--SIPLYGDHVS----VIPILMGVAVFFQQKLTPST 514

Query: 294 QTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV 353
           QT+D  +    +++ F  +M+ +F+ ++PSGL +Y+   NV S AQQ ++ +    +PVV
Sbjct: 515 QTNDQMK---FMMYLFPGMMLIFFN-NMPSGLGLYYLMFNVFSIAQQFYINQTTETEPVV 570

Query: 354 TENASE 359
            ++ S+
Sbjct: 571 LKDKSK 576

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Chloroherpeton thalassium (strain ATCC 35110 / GB-78) (taxid: 517418)

>sp|B2IDV5|YIDC_BEII9 Membrane protein insertase YidC OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=yidC PE=3 SV=1

 Score =  132 bits (333), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 136/257 (52%), Gaps = 21/257 (8%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           G+F FI+  M ++L  +        V  ++G AI+ +TV+VK   FPL  +   S   M+
Sbjct: 356 GYFYFITRPMFWILHTI------YQVVGNFGVAILCITVLVKAVFFPLANRSYLSMAKMK 409

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP++ A+++RYA ++ + Q E   LY++  +NP+AGCLP L  IPV+  LY+ L  V 
Sbjct: 410 AIQPQMLALRERYADDKVKQQQELMELYKREKINPVAGCLPMLIQIPVFFALYKVLF-VT 468

Query: 222 NEGLLTEGFFWIPSLSG--PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLL 279
            E      F WI  LS   PT I        +  LLPF   H P+  H   A  + P+++
Sbjct: 469 IEMRQAPFFGWIRDLSAPDPTNIF------NLFGLLPFDPTHLPMIGH-FLAIGIWPLIM 521

Query: 280 VVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 339
            VS +  M++   P+  DP QK    +F ++P++  +   + PSGL IYW  NN LS  Q
Sbjct: 522 GVSMFFQMKMN--PEPADPVQKQ---MFSWMPVIFTFMLGTFPSGLVIYWTWNNTLSVLQ 576

Query: 340 QVWLRKLGGAKPVVTEN 356
           Q  + K  G K  + +N
Sbjct: 577 QSLIMKRAGVKVELWDN 593

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) (taxid: 395963)

>sp|O66103|YIDC_TREPA Membrane protein insertase YidC OS=Treponema pallidum (strain Nichols) GN=yidC PE=3 SV=2

 Score =  132 bits (333), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 78/217 (35%), Positives = 119/217 (54%), Gaps = 18/217 (8%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIIL+T+ +KV  FPLTK+   +   MQ LQP ++ IQ+RY GN ++I  E ++LY
Sbjct: 416 NWGVAIILVTIAIKVLFFPLTKRSFIAMQKMQELQPHMQRIQERYKGNTQKIHEEMAKLY 475

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           R+A  NPL+GCLPTL  +P+   +Y+  +N           +WIP LS   ++       
Sbjct: 476 REAQYNPLSGCLPTLVQMPIIFAMYRLFNNYFEFRGAMFIPYWIPDLSLADSV------- 528

Query: 250 GISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKF 309
              W LPF    P   W       +LPVL VVSQ    +L + P T+   QK ++ +  +
Sbjct: 529 ---WTLPF--ALPVTQWTQMR---MLPVLYVVSQIMFSKLTQVPHTEQ--QKTSMTIMTY 578

Query: 310 -LPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345
            +PL   +F    PSGL +YW   N ++  QQ+ +++
Sbjct: 579 VMPLFFFFFFYDAPSGLLVYWTAMNGVTLVQQLVMKR 615

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Treponema pallidum (strain Nichols) (taxid: 243276)

>sp|C3LP77|YIDC_VIBCM Membrane protein insertase YidC OS=Vibrio cholerae serotype O1 (strain M66-2) GN=yidC PE=3 SV=1

 Score =  132 bits (332), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 79/248 (31%), Positives = 127/248 (51%), Gaps = 49/248 (19%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct: 329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct: 383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALME-- 440

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAA---YLVLPV 277
                              ++  R S              P  GW HD +A   Y +LP+
Sbjct: 441 -------------------SVELRHS--------------PFFGWIHDLSAQDPYYILPL 467

Query: 278 LLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST 337
           L+  S +  ++ M P    DP Q+    +  F+P+M  +F L  PSGL +YW  +N+++ 
Sbjct: 468 LMGASMFV-IQKMSPTTITDPMQQK---IMTFMPVMFTFFFLWFPSGLVLYWLVSNIVTL 523

Query: 338 AQQVWLRK 345
            QQ  + K
Sbjct: 524 IQQTLIYK 531

Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
156530446	452	chloroplast PPF-1 [Citrus trifoliata]	0.962	0.964	0.990	0.0
225434998	455	PREDICTED: inner membrane protein PPF-1,	0.966	0.962	0.811	0.0
449464930	453	PREDICTED: inner membrane protein PPF-1,	0.960	0.960	0.777	0.0
224054791	451	inner membrane protein [Populus trichoca	0.949	0.953	0.785	0.0
255581095	449	Inner membrane protein PPF-1, chloroplas	0.942	0.951	0.787	0.0
224104461	446	inner membrane protein [Populus trichoca	0.918	0.932	0.804	0.0
356539022	450	PREDICTED: inner membrane protein PPF-1,	0.942	0.948	0.752	1e-180
356542455	450	PREDICTED: inner membrane protein PPF-1,	0.942	0.948	0.761	1e-177
38372402	442	RecName: Full=Inner membrane protein PPF	0.927	0.950	0.749	1e-175
359478973	425	PREDICTED: inner membrane protein PPF-1,	0.900	0.96	0.746	1e-174

>gi|156530446|gb|ABU75304.1| chloroplast PPF-1 [Citrus trifoliata]

 Score =  835 bits (2156), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/437 (99%), Positives = 434/437 (99%), Gaps = 1/437 (0%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60
           M KTLISSPPFVGTPLPSPSSSLSRHGLH LPNRRLASTRVRLSFQEIPPILSLDSSIDL
Sbjct: 1   MAKTLISSPPFVGTPLPSPSSSLSRHGLHPLPNRRLASTRVRLSFQEIPPILSLDSSIDL 60

Query: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120
           NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD
Sbjct: 61  NSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKILKD 120

Query: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180
           GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER
Sbjct: 121 GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER 180

Query: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240
           IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT
Sbjct: 181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPT 240

Query: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQ 300
           TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA ME+MKPPQTDDPAQ
Sbjct: 241 TIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYA-MEIMKPPQTDDPAQ 299

Query: 301 KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI 360
           KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI
Sbjct: 300 KNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEI 359

Query: 361 ITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQ 420
           ITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQ
Sbjct: 360 ITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGEKGQ 419

Query: 421 GVLEEAYASNRSKQVPD 437
           GVLEEAYASNRSKQVPD
Sbjct: 420 GVLEEAYASNRSKQVPD 436

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434998|ref|XP_002284077.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 1 [Vitis vinifera]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/446 (81%), Positives = 392/446 (87%), Gaps = 8/446 (1%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGL-HRLPNRRLASTRVRLSFQEIPPILSLDSS-I 58
           M +TLISSPPF+G PLPS SS   RHGL H LP+RRL STRV+ S  ++PPI SLDSS I
Sbjct: 1   MARTLISSPPFIGKPLPSLSS---RHGLLHSLPHRRLISTRVKFSLHDLPPIHSLDSSSI 57

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D   + SR ESLLYTLADAAVS D A+ G AS +AD A QKNGGWFGFISE ME VLK+L
Sbjct: 58  DFAGIVSRAESLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVVLKVL 117

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           +DG+ AVHVPY+YGFAIILLTVIVK+AT+PLTKKQVESTLAMQNLQPKIKAIQ+RY GNQ
Sbjct: 118 EDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERYKGNQ 177

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY+QAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 178 ERIQLETSRLYKQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 237

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL+PFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 238 PTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 297

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
           +QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV E+AS
Sbjct: 298 SQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNEDAS 357

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 417
            IITAGRAKRS SQP+RAGDRFRQLKEEEK KK++KALPAE++Q + S SDS+  SD E 
Sbjct: 358 GIITAGRAKRSASQPARAGDRFRQLKEEEKKKKISKALPAEEIQALASESDSDEGSDEET 417

Query: 418 --KGQGVLEEAYASNRSKQVPDPSRP 441
             KG  VLEEAY S+ SKQVP  + P
Sbjct: 418 KDKGDDVLEEAYVSSGSKQVPQYAGP 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464930|ref|XP_004150182.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus] gi|449524424|ref|XP_004169223.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Cucumis sativus]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/445 (77%), Positives = 380/445 (85%), Gaps = 10/445 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRH-GLHRLPNRRLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISS PFVG+ LPS    LSRH  LH LP+RR  +TRV  SF ++PP+ +  SS+D
Sbjct: 1   MAKTLISSSPFVGSSLPS----LSRHLPLHTLPHRRHLTTRVNFSFHQLPPVHTFHSSLD 56

Query: 60  LNSVFSRTESLLYTLADAAVSLDSA-SGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
             ++ SRTE LLYTLADAAV++DS  S  A STS D A QKNGGWFGFIS+AME VLK+L
Sbjct: 57  FQAIVSRTEGLLYTLADAAVAVDSTLSAAATSTSPDTAVQKNGGWFGFISDAMEVVLKVL 116

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           K  ++AVH+PYSYGFAIILLT+IVKVATFPLTK+QVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 117 KGSLEAVHIPYSYGFAIILLTIIVKVATFPLTKQQVESTLAMQNLQPKIKAIQQRYAGNQ 176

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL G
Sbjct: 177 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLGG 236

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSG+GISWLLPFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 237 PTTIAARQSGAGISWLLPFVDGHPPLGWSDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 296

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
           AQKNTLL+FKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV ENA 
Sbjct: 297 AQKNTLLIFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNENAP 356

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDG-- 416
            IITAGRAKR+  +  R GDRFRQ++E+EK  KL KA  +ED+QT+ S SD+E   DG  
Sbjct: 357 GIITAGRAKRT-PESERTGDRFRQVREDEKKNKLTKAARSEDIQTLASESDTEDGYDGET 415

Query: 417 -EKGQGVLEEAYASNRSKQVPDPSR 440
            EKG+  LEEAYAS+  K VP  +R
Sbjct: 416 TEKGEDGLEEAYASSADKDVPAYNR 440

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054791|ref|XP_002298365.1| inner membrane protein [Populus trichocarpa] gi|222845623|gb|EEE83170.1| inner membrane protein [Populus trichocarpa]

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/442 (78%), Positives = 382/442 (86%), Gaps = 12/442 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQE-IPPILS-LDSSI 58
           M +TL+SSPPF+GTPLPS    LSRH L    NRR  STR++LS  + IPPI   L SS+
Sbjct: 1   MARTLLSSPPFIGTPLPS----LSRHALTT--NRRFISTRIKLSLHDNIPPIHHHLHSSV 54

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D N++ SR E  LYTLADAAV++DSA+   +S +AD A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 55  DFNTIISRAEGFLYTLADAAVAVDSAASTTSSDTADAA-QKNGGWFGFISDGMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPY+YGFAIILLT+ VKVAT PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 114 KDGLSSVHVPYAYGFAIILLTIAVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL PFVDGHPPLGWHDTAAYLVLPVLL+ SQY SME+MKPPQTDDP
Sbjct: 234 PTTIAARQSGSGISWLFPFVDGHPPLGWHDTAAYLVLPVLLIASQYVSMEIMKPPQTDDP 293

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
            QKNTLLVFKFLP+MIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV ENAS
Sbjct: 294 TQKNTLLVFKFLPIMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNENAS 353

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 417
            IITAGRAKRS SQP + GDRF+QLKE++K K L KALP E VQ ++SAS S+ +SD E 
Sbjct: 354 GIITAGRAKRSASQPGQPGDRFKQLKEQDKSKTLRKALPTEGVQALDSASGSDEDSDEET 413

Query: 418 --KGQGVLEEAYASNRSKQVPD 437
             KG+ VLEE YAS+ SK+VPD
Sbjct: 414 NDKGEEVLEETYASSASKRVPD 435

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581095|ref|XP_002531362.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis] gi|223529022|gb|EEF31010.1| Inner membrane protein PPF-1, chloroplast precursor, putative [Ricinus communis]

 Score =  657 bits (1695), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/443 (78%), Positives = 378/443 (85%), Gaps = 16/443 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHR--LPNRR-LASTRVRLSFQEIPPILSLDSS 57
           M KTLISSP F+G PLPS SS   RHGL    LP+RR +++T+V+ S  EIPPI  LDS 
Sbjct: 1   MAKTLISSPSFIGAPLPSSSS---RHGLQHSLLPSRRFISTTKVKFSLHEIPPITHLDS- 56

Query: 58  IDLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKI 117
           +D NS+ SR ESLLYTLADAAV++       +S + D A QKN GWFGFISE MEFVLK+
Sbjct: 57  VDFNSIVSRAESLLYTLADAAVAV------DSSAATDTAVQKNNGWFGFISEGMEFVLKV 110

Query: 118 LKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN 177
           LKDG+ +VHVPYSYGFAIILLTVIVK+AT PLTK+QVESTLAMQNLQPKIKAIQQRYAGN
Sbjct: 111 LKDGLSSVHVPYSYGFAIILLTVIVKIATLPLTKQQVESTLAMQNLQPKIKAIQQRYAGN 170

Query: 178 QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLS 237
           QERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSL 
Sbjct: 171 QERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLG 230

Query: 238 GPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDD 297
           GPTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLLVVSQY SME+MKPPQTDD
Sbjct: 231 GPTTIAARQSGSGISWLFPFVDGHPPLGWYDTAAYLVLPVLLVVSQYVSMEIMKPPQTDD 290

Query: 298 PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENA 357
           PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF NNVLSTAQQVWLRKLGGAKPVV +NA
Sbjct: 291 PAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFVNNVLSTAQQVWLRKLGGAKPVVDQNA 350

Query: 358 SEIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTM---NSASDSEGES 414
           S IITAGRAKRS SQP R GDRFRQLKEEEK KKL KALP ++ Q +   + + +   E 
Sbjct: 351 SGIITAGRAKRSASQPQRGGDRFRQLKEEEKRKKLGKALPDDEAQALDSASDSDEESDEE 410

Query: 415 DGEKGQGVLEEAYASNRSKQVPD 437
              KG+ VLEEAYAS+ SKQVPD
Sbjct: 411 TKAKGEEVLEEAYASSSSKQVPD 433

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104461|ref|XP_002313443.1| inner membrane protein [Populus trichocarpa] gi|222849851|gb|EEE87398.1| inner membrane protein [Populus trichocarpa]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/430 (80%), Positives = 375/430 (87%), Gaps = 14/430 (3%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNRRLASTRVRLSFQE-IPPILS-LDSSI 58
           M +TL+SSPPF+ T LPS    LSRH L    NRR  STR++LS  + IPPI   LDSSI
Sbjct: 1   MARTLLSSPPFIATSLPS----LSRHTLTT--NRRFISTRIKLSLHDNIPPIHHHLDSSI 54

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D NS+ SR E  LYTLADAAV++DSA   A++TS D A QK+GGWFGFIS+ MEFVLK+L
Sbjct: 55  DFNSIISRAEGFLYTLADAAVAVDSA---ASTTSTDTA-QKSGGWFGFISDGMEFVLKVL 110

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTV VKVAT PLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ
Sbjct: 111 KDGLSAVHVPYAYGFAIILLTVFVKVATLPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 170

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGC PTLATIPVWIGLYQALSNVANEG+LTEGFFWIPSL G
Sbjct: 171 ERIQLETSRLYRQAGVNPLAGCFPTLATIPVWIGLYQALSNVANEGVLTEGFFWIPSLGG 230

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL PFVDGHPPLGW+DTAAYLVLPVLLVVSQY SME+MKPPQTDDP
Sbjct: 231 PTTIAARQSGSGISWLFPFVDGHPPLGWNDTAAYLVLPVLLVVSQYVSMEIMKPPQTDDP 290

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
            QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLR+LGGAKPVV ENAS
Sbjct: 291 TQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRQLGGAKPVVNENAS 350

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEG-ESDGE 417
            IITAGRAKRS +QP + GDRFR LKEEEKGKKL+KAL +EDVQ ++SASD +  E   +
Sbjct: 351 GIITAGRAKRSAAQPGQPGDRFR-LKEEEKGKKLSKALQSEDVQALDSASDEDSDEETKD 409

Query: 418 KGQGVLEEAY 427
           KG+ VLEEAY
Sbjct: 410 KGEEVLEEAY 419

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356539022|ref|XP_003537999.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  635 bits (1639), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 331/440 (75%), Positives = 365/440 (82%), Gaps = 13/440 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNR-RLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISS  F+GTPLPS    L RH    LP+R RL +T+V +S  EIPPI S+  +ID
Sbjct: 1   MAKTLISSQSFIGTPLPS----LPRH---HLPHRTRLVATKVLVSLHEIPPIHSISRNID 53

Query: 60  LNSVFSRTESLLYTLADAAVSLDSASGGAAST-SADGATQKNGGWFGFISEAMEFVLKIL 118
              + +R E LLYTLADAAV+ D A    ++  + D A QK+GGWFGFISEAMEFVLK+L
Sbjct: 54  FAGIVTRAEGLLYTLADAAVAADPAVAADSAASTTDAAVQKSGGWFGFISEAMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ RYAGNQ
Sbjct: 114 KDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSG+GISWL PFVDGHPPLGW DTAAYLVLP+LLVVSQY SME+MKPPQT DP
Sbjct: 234 PTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQT-DP 292

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
           +QKN LL+ KFLPLMIGYFSLSVPSGL+IYWF NNVLSTAQQVWLRKLGGAKPVV ENA 
Sbjct: 293 SQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENAG 352

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 417
            IITAGRAKRS  QP R G+RF+QLKEE+K KK++KALP E+VQ + S S S+  SD E 
Sbjct: 353 GIITAGRAKRSDLQPVRNGERFKQLKEEDKKKKVSKALPVEEVQPLASVSASDDGSDTES 412

Query: 418 --KGQGVLEEAYASNRSKQV 435
             KGQ   EEAYAS   ++V
Sbjct: 413 DNKGQEDAEEAYASKVGEEV 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542455|ref|XP_003539682.1| PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max]

 Score =  629 bits (1621), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 335/440 (76%), Positives = 366/440 (83%), Gaps = 13/440 (2%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRLPNR-RLASTRVRLSFQEIPPILSLDSSID 59
           M KTLISSP F+GTPLPS    L RH    LP+R R  +T+V +S  EIPPI SL  SID
Sbjct: 1   MAKTLISSPSFIGTPLPS----LPRH---HLPHRTRFVTTKVHVSLHEIPPIQSLSHSID 53

Query: 60  LNSVFSRTESLLYTLADAAVSLDSASGGAASTSA-DGATQKNGGWFGFISEAMEFVLKIL 118
              + +R E LLYTLADAAV+ D A     + S  D A QK+GGWFGFISEAMEFVLK+L
Sbjct: 54  FAGIVTRAEGLLYTLADAAVAADPAVAADTAASTTDAAVQKSGGWFGFISEAMEFVLKVL 113

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ AVHVPY+YGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ RYAGNQ
Sbjct: 114 KDGLSAVHVPYAYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQDRYAGNQ 173

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 174 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 233

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSG+GISWL PFVDGHPPLGW DTAAYLVLP+LLVVSQY SME+MKPPQT DP
Sbjct: 234 PTTIAARQSGAGISWLFPFVDGHPPLGWQDTAAYLVLPILLVVSQYVSMEIMKPPQT-DP 292

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
           +QKN LL+ KFLPLMIGYFSLSVPSGL+IYWF NNVLSTAQQVWLRKLGGAKPVV ENA 
Sbjct: 293 SQKNQLLILKFLPLMIGYFSLSVPSGLTIYWFINNVLSTAQQVWLRKLGGAKPVVNENAG 352

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 417
            IITAGRAKRS SQ +R G+RF+QLKEEEK KK++KALP E+VQ++ S S S+  SD E 
Sbjct: 353 GIITAGRAKRSDSQLARNGERFKQLKEEEKKKKVSKALPVEEVQSLASVSASDDGSDTES 412

Query: 418 --KGQGVLEEAYASNRSKQV 435
             KGQ   EEAYAS   ++V
Sbjct: 413 DNKGQEDAEEAYASKVGEEV 432

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|38372402|sp|Q9FY06.2|PPF1_PEA RecName: Full=Inner membrane protein PPF-1, chloroplastic; AltName: Full=Post-floral-specific protein 1; Flags: Precursor gi|2231046|emb|CAA73179.1| PPF-1 protein [Pisum sativum]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 329/439 (74%), Positives = 363/439 (82%), Gaps = 19/439 (4%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGLHRL--PNRRLASTRVRLSFQEIPPILSLDSSI 58
           M KTLISSP F+GTPLPS         LHR   PNR    T+V+ SF ++PPI S+  S+
Sbjct: 1   MAKTLISSPSFLGTPLPS---------LHRTFSPNRTRLFTKVQFSFHQLPPIQSVSHSV 51

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           DL+ +F+R E LLYTLADA V+        A+ S D A QKNGGWFGFIS+ MEFVLK+L
Sbjct: 52  DLSGIFARAEGLLYTLADATVAA------DAAASTDVAAQKNGGWFGFISDGMEFVLKVL 105

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           KDG+ +VHVPYSYGFAIILLTVIVK AT PLTK+QVESTLAMQNLQPKIKAIQ+RYAGNQ
Sbjct: 106 KDGLSSVHVPYSYGFAIILLTVIVKAATLPLTKQQVESTLAMQNLQPKIKAIQERYAGNQ 165

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY QAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGF WIPSL G
Sbjct: 166 ERIQLETSRLYTQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFLWIPSLGG 225

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PT+IAARQSGSGISWL PFVDGHP LGW+DTAAYLVLPVLL+VSQY SME+MKPPQT+DP
Sbjct: 226 PTSIAARQSGSGISWLFPFVDGHPLLGWYDTAAYLVLPVLLIVSQYVSMEIMKPPQTNDP 285

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
            QKNTLL+FKFLPLMIGYFSLSVPSGL+IYWFTNNVLSTAQQVWLRKLGGAKP V ENA 
Sbjct: 286 NQKNTLLIFKFLPLMIGYFSLSVPSGLTIYWFTNNVLSTAQQVWLRKLGGAKPAVNENAG 345

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 417
            IITAG+AKRS S+P + G+RFRQLKEEEK KKL KALP E+VQ + SAS S   SD E 
Sbjct: 346 GIITAGQAKRSASKPEKGGERFRQLKEEEKKKKLIKALPVEEVQPLASASASNDGSDVEN 405

Query: 418 -KGQGVLEEAYASNRSKQV 435
            K Q V EE+  S  S++V
Sbjct: 406 NKEQEVTEESNTSKVSQEV 424

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478973|ref|XP_003632199.1| PREDICTED: inner membrane protein PPF-1, chloroplastic isoform 2 [Vitis vinifera]

 Score =  616 bits (1589), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 333/446 (74%), Positives = 363/446 (81%), Gaps = 38/446 (8%)

Query: 1   MTKTLISSPPFVGTPLPSPSSSLSRHGL-HRLPNRRLASTRVRLSFQEIPPILSLDSS-I 58
           M +TLISSPPF+G PLPS SS   RHGL H LP+RRL STRV+ S  ++PPI SLDSS I
Sbjct: 1   MARTLISSPPFIGKPLPSLSS---RHGLLHSLPHRRLISTRVKFSLHDLPPIHSLDSSSI 57

Query: 59  DLNSVFSRTESLLYTLADAAVSLDSASGGAASTSADGATQKNGGWFGFISEAMEFVLKIL 118
           D   + SR ESLLYTLADAAVS D A+ G AS +AD A QKNGGWFGFISE ME VLK+L
Sbjct: 58  DFAGIVSRAESLLYTLADAAVSADPAAAGPASGTADAAVQKNGGWFGFISEGMEVVLKVL 117

Query: 119 KDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQ 178
           +DG+ AVHVPY+YGFAIILLTVIVK+AT+PLTKKQVESTLAMQNLQPKIKAIQ+RY GNQ
Sbjct: 118 EDGLTAVHVPYAYGFAIILLTVIVKIATYPLTKKQVESTLAMQNLQPKIKAIQERYKGNQ 177

Query: 179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSG 238
           ERIQLETSRLY+QAGVNPLA                              GFFWIPSL G
Sbjct: 178 ERIQLETSRLYKQAGVNPLA------------------------------GFFWIPSLGG 207

Query: 239 PTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDP 298
           PTTIAARQSGSGISWL+PFVDGHPPLGW DTAAYLVLPVLLV+SQY SMELMKPPQTDDP
Sbjct: 208 PTTIAARQSGSGISWLIPFVDGHPPLGWQDTAAYLVLPVLLVISQYVSMELMKPPQTDDP 267

Query: 299 AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENAS 358
           +QKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVV E+AS
Sbjct: 268 SQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVNEDAS 327

Query: 359 EIITAGRAKRSVSQPSRAGDRFRQLKEEEKGKKLNKALPAEDVQTMNSASDSEGESDGE- 417
            IITAGRAKRS SQP+RAGDRFRQLKEEEK KK++KALPAE++Q + S SDS+  SD E 
Sbjct: 328 GIITAGRAKRSASQPARAGDRFRQLKEEEKKKKISKALPAEEIQALASESDSDEGSDEET 387

Query: 418 --KGQGVLEEAYASNRSKQVPDPSRP 441
             KG  VLEEAY S+ SKQVP  + P
Sbjct: 388 KDKGDDVLEEAYVSSGSKQVPQYAGP 413

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	453
TAIR|locus:2053230	462	ALB3 "ALBINO 3" [Arabidopsis t	0.885	0.867	0.654	3.7e-135
TAIR|locus:2809836	499	ALB4 "AT1G24490" [Arabidopsis	0.668	0.607	0.622	2.1e-100
UNIPROTKB|Q3AG58	223	CHY_0004 "Sporulation associat	0.282	0.573	0.379	9.9e-31
TIGR_CMR|CHY_0004	223	CHY_0004 "sporulation associat	0.282	0.573	0.379	9.9e-31
UNIPROTKB|Q71VQ8	287	yidC1 "Membrane protein insert	0.236	0.372	0.412	3.6e-27
UNIPROTKB|Q5HUK1	530	yidC "Membrane protein inserta	0.284	0.243	0.375	8.6e-27
TIGR_CMR|CJE_1038	530	CJE_1038 "inner membrane prote	0.284	0.243	0.375	8.6e-27
UNIPROTKB|Q9KVY4	541	yidC "Membrane protein inserta	0.282	0.236	0.386	9.4e-26
TIGR_CMR|VC_0004	541	VC_0004 "inner membrane protei	0.282	0.236	0.386	9.4e-26
UNIPROTKB|Q81XH4	260	yidC1 "Membrane protein insert	0.278	0.484	0.321	7.2e-23

TAIR|locus:2053230 ALB3 "ALBINO 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1324 (471.1 bits), Expect = 3.7e-135, P = 3.7e-135
 Identities = 267/408 (65%), Positives = 299/408 (73%)

Query:    33 NRRL--ASTRVRLSFQEXXXXXXXXXXXXXNSVFSRTESLLYXXXXXXXXXXXXXXXXXX 90
             N +L   ST VR S  E              ++F+R ESLLY                  
Sbjct:    44 NNKLFTTSTTVRFSLNEIPPFHGLDSSVDIGAIFTRAESLLYTIADAAVVGADSVVTTDS 103

Query:    91 XXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLT 150
                    QK+GGWFGFIS+AME VLKILKDG+ AVHVPY+YGFAIILLT+IVK AT+PLT
Sbjct:   104 SAV----QKSGGWFGFISDAMELVLKILKDGLSAVHVPYAYGFAIILLTIIVKAATYPLT 159

Query:   151 KKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVW 210
             K+QVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY+QAGVNPLAGCLPTLATIPVW
Sbjct:   160 KQQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYKQAGVNPLAGCLPTLATIPVW 219

Query:   211 IGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTA 270
             IGLYQALSNVANEGL TEGFFWIPSL GPT+IAARQSGSGISWL PFVDGHPPLGW+DT 
Sbjct:   220 IGLYQALSNVANEGLFTEGFFWIPSLGGPTSIAARQSGSGISWLFPFVDGHPPLGWYDTV 279

Query:   271 AYXXXXXXXXXSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF 330
             AY         SQY SME+MKPPQTDDPAQKNTLLVFKFLPLMIGYF+LSVPSGLSIYW 
Sbjct:   280 AYLVLPVLLIASQYVSMEIMKPPQTDDPAQKNTLLVFKFLPLMIGYFALSVPSGLSIYWL 339

Query:   331 TNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKRSVSQPSRAGDRFRQXXXXXXXX 390
             TNNVLSTAQQV+LRKLGGAKP + ENAS+II+AGRAKRS++QP  AG+RFRQ        
Sbjct:   340 TNNVLSTAQQVYLRKLGGAKPNMDENASKIISAGRAKRSIAQPDDAGERFRQLKEQEKRS 399

Query:   391 XXXXXXPAEDVQTMNSAXXXXXXXXXXKGQGVLEEAYASNR-SKQVPD 437
                     + V+ +  +          + +   E A AS+  SK +P+
Sbjct:   400 KKNKAVAKDTVELVEESQSESEEGSDDEEEEAREGALASSTTSKPLPE 447

GO:0005886 "plasma membrane" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IEA

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=IDA

GO:0045038 "protein import into chloroplast thylakoid membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0090342 "regulation of cell aging" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA;IMP

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2809836 ALB4 "AT1G24490" [Arabidopsis thaliana (taxid:3702)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 193/310 (62%), Positives = 235/310 (75%)

Query:    68 ESLLYXXXXXXXXXXXXXXXXXXXXXXXXXQKNGGWFGFISEAMEFVLKILKDGIDAVHV 127
             E+LLY                         Q N  WF  I+  ME +LK+LKDG+  VHV
Sbjct:    63 ENLLYTIADAAVSSSETFESVAGTTTKTT-QSND-WFSGIANYMETILKVLKDGLSTVHV 120

Query:   128 PYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSR 187
             PYSYGFAIILLTV+VK ATFPLTKKQVES +AM++L P+IKAIQ+RYAG+QE+IQLET+R
Sbjct:   121 PYSYGFAIILLTVLVKAATFPLTKKQVESAMAMKSLTPQIKAIQERYAGDQEKIQLETAR 180

Query:   188 LYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS 247
             LY+ AG+NPLAGCLPTLATIPVWIGLY+ALSNVA+EGLLTEGFFWIPSL+GPTT+AARQ+
Sbjct:   181 LYKLAGINPLAGCLPTLATIPVWIGLYRALSNVADEGLLTEGFFWIPSLAGPTTVAARQN 240

Query:   248 GSGISWLLPFVDGHPPLGWHDTAAYXXXXXXXXXSQYASMELMKPPQTDDPAQKNTLLVF 307
             GSGISWL PF++GHPPLGW DT AY         SQY S+++M+  Q++DPA K++  V 
Sbjct:   241 GSGISWLFPFIEGHPPLGWPDTLAYLVLPLLLVFSQYLSIQIMQSSQSNDPAMKSSQAVT 300

Query:   308 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIIT----A 363
             K LPLMIGYF+LSVPSGLS+YW TNN+LSTAQQVWL+K GGAK  V E  + ++T     
Sbjct:   301 KLLPLMIGYFALSVPSGLSLYWLTNNILSTAQQVWLQKYGGAKNPV-EKFTNLVTKEDKT 359

Query:   364 GRAKRSVSQP 373
              + ++S S+P
Sbjct:   360 QQIEKSFSEP 369

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0051205 "protein insertion into membrane" evidence=IEA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

UNIPROTKB|Q3AG58 CHY_0004 "Sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CHY_0004 CHY_0004 "sporulation associated-membrane protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 247 (92.0 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 49/129 (37%), Positives = 80/129 (62%)

Query:   109 EAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK 168
             +A+ ++L  L     ++ +P SY  AII+LT+++K+  +PL   Q++S   MQ LQPK++
Sbjct:     6 DAITWILNNLYLFTKSIGIP-SYALAIIMLTILIKIILYPLNHAQMKSMKVMQELQPKMQ 64

Query:   169 AIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTE 228
              IQ++Y  + ++ Q     LY++ GVNP++GCLP L  +P+ I LY+AL N         
Sbjct:    65 EIQKKYKNDPQKQQQALMELYKEYGVNPMSGCLPMLIQLPILIALYRALYNFKYLNPAHA 124

Query:   229 GFFWIPSLS 237
              FFWI ++S
Sbjct:   125 KFFWIANIS 133

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=ISS

GO:0030436 "asexual sporulation" evidence=ISS

UNIPROTKB|Q71VQ8 yidC1 "Membrane protein insertase YidC 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 241 (89.9 bits), Expect = 3.6e-27, Sum P(2) = 3.6e-27
 Identities = 47/114 (41%), Positives = 74/114 (64%)

Query:   130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN----QERIQLET 185
             SY   II++T+++++   PL  KQ++S  AM NLQPKIK +Q++Y+      ++++Q ET
Sbjct:    64 SYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIKELQEKYSSKDNETKQKLQQET 123

Query:   186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGP 239
              RLY++  VNP+ GCLP L  +P+ +G YQA+S  A   + T+ F W+  L  P
Sbjct:   124 MRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE--IKTDSFLWM-QLGNP 174

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5HUK1 yidC "Membrane protein insertase YidC" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 8.6e-27, Sum P(2) = 8.6e-27
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|CJE_1038 CJE_1038 "inner membrane protein, 60 kDa" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 239 (89.2 bits), Expect = 8.6e-27, Sum P(2) = 8.6e-27
 Identities = 51/136 (37%), Positives = 82/136 (60%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GWF FI++ M   L  L   I       ++G+AI+++T+IV++  FPLT K + S   ++
Sbjct:   313 GWFTFIAKPMFEFLNFLHQYIG------NWGWAIVVMTLIVRIILFPLTYKSMISMNKLK 366

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
             +L PK+K I++RY G+ +++ +    LY++ G NP++GCLP L  IP++  +Y+ L N A
Sbjct:   367 DLAPKMKDIRERYKGDPQKMNMHMMELYKKHGANPMSGCLPILLQIPIFFAIYRVLLN-A 425

Query:   222 NEGLLTEGFFWIPSLS 237
              E       FWI  LS
Sbjct:   426 IELKAAPWAFWIHDLS 441

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q9KVY4 yidC "Membrane protein insertase YidC" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 233 (87.1 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|VC_0004 VC_0004 "inner membrane protein, 60 kDa" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 233 (87.1 bits), Expect = 9.4e-26, Sum P(2) = 9.4e-26
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:   102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             GW  FI++ + ++L +++  +       ++G AII LT IV+ A +PLTK Q  S   M+
Sbjct:   329 GWLWFIAKPLHWLLSVIQTFVG------NWGVAIICLTFIVRGAMYPLTKAQYTSMAKMR 382

Query:   162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
              LQPK++A+++R   +++R+  E   LY++  VNPL GCLP L  +P++I LY AL    
Sbjct:   383 MLQPKLQAMRERIGDDRQRMSQEMMELYKKEKVNPLGGCLPILLQMPIFIALYWALMESV 442

Query:   222 NEGLLTEGFF-WIPSLS 237
                L    FF WI  LS
Sbjct:   443 E--LRHSPFFGWIHDLS 457

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q81XH4 yidC1 "Membrane protein insertase YidC 1" [Bacillus anthracis (taxid:1392)]

 Score = 199 (75.1 bits), Expect = 7.2e-23, Sum P(2) = 7.2e-23
 Identities = 45/140 (32%), Positives = 76/140 (54%)

Query:   101 GGWFGFISEAMEFVLKILKDGIDAVHVP-YSYGFAIILLTVIVKVATFPLTKKQVESTLA 159
             G W  +    + F+++ +     A H+P  S+G AII++T++++ A  PL   Q  S   
Sbjct:    35 GIWDHYFVYPISFMIQFV-----AHHIPGASFGIAIIIMTLVIRSAMIPLAVSQYRSQAK 89

Query:   160 MQNLQPKIKAIQQRYAG------NQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGL 213
             M+ +QP+++ ++Q+Y         Q++ Q E S L +  G NPLAGC P L  +P++  L
Sbjct:    90 MKKMQPELQKLKQKYGDVSKDLEKQKQYQKEMSELMKSGGWNPLAGCWPLLIQMPIFSAL 149

Query:   214 YQALSNVANEGLLTEGFFWI 233
             Y A+S    E + T  F W+
Sbjct:   150 YYAISRT--EEIRTSTFLWV 167

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBP4	ALB3_ARATH	No assigned EC number	0.7537	0.8432	0.8268	yes	no
Q9FY06	PPF1_PEA	No assigned EC number	0.7494	0.9271	0.9502	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	453
pfam02096	193	pfam02096, 60KD_IMP, 60Kd inner membrane protein	3e-72
TIGR03592	181	TIGR03592, yidC_oxa1_cterm, membrane protein inser	2e-69
PRK01318	521	PRK01318, PRK01318, membrane protein insertase; Pr	3e-58
COG0706	314	COG0706, YidC, Preprotein translocase subunit YidC	2e-49
PRK00145	223	PRK00145, PRK00145, putative inner membrane protei	9e-43
PRK01622	256	PRK01622, PRK01622, OxaA-like protein precursor; V	4e-33
PRK01001	795	PRK01001, PRK01001, putative inner membrane protei	2e-32
PRK01315	329	PRK01315, PRK01315, putative inner membrane protei	5e-31
PRK02944	255	PRK02944, PRK02944, OxaA-like protein precursor; V	2e-30
PRK03449	304	PRK03449, PRK03449, putative inner membrane protei	1e-25
PRK02654	375	PRK02654, PRK02654, putative inner membrane protei	4e-18
PRK00247	429	PRK00247, PRK00247, putative inner membrane protei	7e-15
PRK02463	307	PRK02463, PRK02463, OxaA-like protein precursor; P	4e-14
PRK02201	357	PRK02201, PRK02201, putative inner membrane protei	1e-13

>gnl|CDD|216872 pfam02096, 60KD_IMP, 60Kd inner membrane protein

 Score =  225 bits (577), Expect = 3e-72
 Identities = 79/218 (36%), Positives = 120/218 (55%), Gaps = 31/218 (14%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT++V++   PLT KQ +S   MQ LQP+IK IQ++Y  + +++Q E  +LY
Sbjct: 2   NWGLAIILLTILVRLLLLPLTLKQYKSMAKMQELQPEIKEIQEKYKDDPQKLQQEMMKLY 61

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSG 248
           ++ GVNPLAGCLP L  +P++I LY+AL N+A    L T GF WI  LS P         
Sbjct: 62  KEHGVNPLAGCLPMLIQLPIFIALYRALRNMAELRSLETAGFLWIKDLSAP--------- 112

Query: 249 SGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTL-LVF 307
                     D            Y +LP+L  ++ +   +L       D  Q   + ++ 
Sbjct: 113 ----------DPP----------YFILPILAGLTMFLQQKLSPSQDPPDLQQSAQMKIMM 152

Query: 308 KFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345
             +PL+  +F L+ P+GL +YW  +N+ S  QQ+ +RK
Sbjct: 153 YIMPLIFLFFFLNFPAGLVLYWIVSNLFSLVQQLIIRK 190

Length = 193

>gnl|CDD|234272 TIGR03592, yidC_oxa1_cterm, membrane protein insertase, YidC/Oxa1 family, C-terminal domain

 Score =  218 bits (558), Expect = 2e-69
 Identities = 74/216 (34%), Positives = 111/216 (51%), Gaps = 35/216 (16%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++G AIILLT+IV++   PLT KQ +S   MQ LQPK+K IQ++Y  + +++Q E  +LY
Sbjct: 1   NWGLAIILLTIIVRLILLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLY 60

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGS 249
           ++ GVNPL GCLP L  +P++I LYQ L       L    F WI  LS P          
Sbjct: 61  KEEGVNPLGGCLPLLIQMPIFIALYQVLRRS--IELRHAPFLWIQDLSAP---------- 108

Query: 250 GISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKF 309
                                 Y +LP+L+ V+ +   +L      D   QK  +     
Sbjct: 109 --------------------DPYYILPILMGVTMFLQQKLSPSGPPDPAQQKIMM---YI 145

Query: 310 LPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK 345
           +P+M  +F LS P+GL +YW  +N+ +  QQ+ + +
Sbjct: 146 MPVMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR 181

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here [Protein fate, Protein and peptide secretion and trafficking]. Length = 181

>gnl|CDD|234942 PRK01318, PRK01318, membrane protein insertase; Provisional

 Score =  199 bits (509), Expect = 3e-58
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 55/267 (20%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GW  FI++ + ++L  L   +       ++G+AIILLT+IVK+  FPLT K   S   M+
Sbjct: 300 GWLWFITKPLFWLLDFLHSFVG------NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMK 353

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            LQPK++ ++++Y  + +++Q E   LY++  VNPL GCLP L  IP++  LY+ L    
Sbjct: 354 VLQPKMQELKEKYKDDPQKMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVL---- 409

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGW-HDTAAY-------- 272
                              +I  R +        PF      +GW HD +A         
Sbjct: 410 -----------------LVSIELRHA--------PF------IGWIHDLSAPDPYFILHI 438

Query: 273 LVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTN 332
            +LP+L+ ++ +   +L   P   DP Q     + KF+PL+  +F LS P+GL +YW  N
Sbjct: 439 GLLPILMGITMFLQQKLN--PTPTDPMQAK---IMKFMPLIFTFFFLSFPAGLVLYWIVN 493

Query: 333 NVLSTAQQVWLRKLGGAKPVVTENASE 359
           N+L+  QQ  + +    K ++  N  +
Sbjct: 494 NLLTIIQQYLINRRLEKKKLLAANKKK 520

Length = 521

>gnl|CDD|223778 COG0706, YidC, Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

 Score =  170 bits (432), Expect = 2e-49
 Identities = 74/245 (30%), Positives = 114/245 (46%), Gaps = 36/245 (14%)

Query: 102 GWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GWF  I   +  +L  +           ++G +IILLT+IV++  FPL++K   S   MQ
Sbjct: 86  GWFWNILAPLFPLLLFID-----SFSGLNWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQ 140

Query: 162 NLQPKIKAIQQRYAGN-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNV 220
            LQPKIK IQ++Y G  +++ Q E  +LY++  VNPLAGCLP L  +P++I LY  L + 
Sbjct: 141 ELQPKIKEIQEKYKGTDKQKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRST 200

Query: 221 ANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLV 280
                      WI  LS P                       P         L+LP+L  
Sbjct: 201 VELR-GAPFLGWITDLSLPD----------------------PDYI------LLLPILAG 231

Query: 281 VSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQ 340
           V+ +   +L     +     +   +    +P++  +F  + P+GL +YW  +N+ S  QQ
Sbjct: 232 VTMFLQQKLSPRNLSTPQDPQQKKM-MYIMPIIFTFFFFNFPAGLVLYWIVSNLFSILQQ 290

Query: 341 VWLRK 345
             L K
Sbjct: 291 YILNK 295

Length = 314

>gnl|CDD|234665 PRK00145, PRK00145, putative inner membrane protein translocase component YidC; Provisional

 Score =  150 bits (380), Expect = 9e-43
 Identities = 72/256 (28%), Positives = 119/256 (46%), Gaps = 36/256 (14%)

Query: 104 FGFISEAMEFVLKILKDGIDAV--HVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
             +++ A     K +   + +V  +  +SYG AIIL+T+I+++   PL  KQ +S+L M 
Sbjct: 2   MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMN 61

Query: 162 NLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVA 221
            +QP+IK +Q +Y  + +++Q E  +LY++ GVNPL GCLP L   P+ I LY   +N+ 
Sbjct: 62  EIQPEIKKLQAKYKNDPQKLQQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNL- 120

Query: 222 NEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVV 281
             G+    F WI  L+ P                                  +LP+L   
Sbjct: 121 -TGINGVSFLWIKDLAKP------------------------------DITWILPILSGA 149

Query: 282 SQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV 341
           + Y S  LM    +    Q  T+ +   + + +G  S    S L +YW   N++   Q  
Sbjct: 150 TTYLSGYLMTKADSSQAGQMKTMNI--GMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY 207

Query: 342 WLRKLGGAKPVVTENA 357
           +++KL   K V  + A
Sbjct: 208 FIKKLELKKKVEAKAA 223

Length = 223

>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated

 Score =  125 bits (315), Expect = 4e-33
 Identities = 65/272 (23%), Positives = 113/272 (41%), Gaps = 52/272 (19%)

Query: 85  SGGAASTSADGATQKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKV 144
           SG + +   D  +  +G +  +      F+++ +     A H+  SYG AII++T+I++ 
Sbjct: 21  SGCSNAAPIDAHS--DGFFDHYFVYPFSFLIQFV-----AHHIGGSYGIAIIIVTLIIRS 73

Query: 145 ATFPLTKKQVESTLAMQN----LQPKIKAIQQRY-----AGNQERIQLETSRLYRQAGVN 195
              PL   Q +S   MQ     ++P++  IQ +         Q+  Q E   LY+   +N
Sbjct: 74  LMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKSGNIN 133

Query: 196 PLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWL 254
           PLA GCLP L  +P+    Y A+     E + +  F W                      
Sbjct: 134 PLAMGCLPLLIQMPILSAFYYAIR--RTEEIASHSFLW---------------------- 169

Query: 255 LPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMI 314
             F  GH            +LP++  ++ +  M++ +   T     +   +    +P MI
Sbjct: 170 --FNLGHAD---------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMI 218

Query: 315 GYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKL 346
            + S + PS L +YW T  +    Q + LRK+
Sbjct: 219 LFMSFAAPSALVLYWITGGLFLMGQTIVLRKV 250

Length = 256

>gnl|CDD|234887 PRK01001, PRK01001, putative inner membrane protein translocase component YidC; Provisional

 Score =  130 bits (328), Expect = 2e-32
 Identities = 87/283 (30%), Positives = 132/283 (46%), Gaps = 52/283 (18%)

Query: 102 GWFGFISE---AMEFVL-KILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVEST 157
           G+F FI+E   A+ F++ K  K       +  S+G +IILLTV +K+  +PL    + S 
Sbjct: 549 GFFSFITEPFAALLFIIMKFFK------FLTGSWGISIILLTVFLKLLLYPLNAWSIRSM 602

Query: 158 LAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             MQ L P I+ IQQ+Y    +R Q+E   LY+   VNP+ GCLP L  +P  I ++  L
Sbjct: 603 RRMQKLSPYIQEIQQKYKKEPKRAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLL 662

Query: 218 SNVANEGLLTEGFF---WIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLV 274
               +  LL    F   WI +L+ P  +         SW  P         W     + +
Sbjct: 663 K---SSFLLRGASFIPGWIDNLTAPDVL--------FSWETPI--------WFIGNEFHL 703

Query: 275 LPVLLVVSQYASMELM----KPPQTDDPAQKNTL-----LVFKFLPLMIGYFSLSVPSGL 325
           LP+LL V  +A  ++     K P TD   Q+  +     L+F F   M   F    PSGL
Sbjct: 704 LPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTF---MFYNF----PSGL 756

Query: 326 SIYWFTNNVLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR 368
           +IYW ++ +L   QQ    K+  +K +     +E++   +  R
Sbjct: 757 NIYWLSSMLLGVIQQWVTNKILDSKHL----KNEVVPNKKKHR 795

Length = 795

>gnl|CDD|234941 PRK01315, PRK01315, putative inner membrane protein translocase component YidC; Provisional

 Score =  121 bits (305), Expect = 5e-31
 Identities = 64/229 (27%), Positives = 111/229 (48%), Gaps = 36/229 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +I+ L ++++    PL  KQ++S   MQ +QPK+K IQ++Y G++ER+  E  +LY
Sbjct: 41  TWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEKYKGDRERMSQEMMKLY 100

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE----GLLTEG---------FFWIPSL 236
           ++ G NPL+ CLP L  +P++  LY+ L + A+     G +             F  P L
Sbjct: 101 KETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRGDGIGPINPPLLESFRHAHIFGAP-L 159

Query: 237 SGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQ-YASMELMK---P 292
           +  T + A  +G+    ++                  VL +L+  SQ    ++LM    P
Sbjct: 160 AA-TFLQALNAGNTAVQVVA----------------AVLIILMSASQFITQLQLMTKNMP 202

Query: 293 PQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQ 340
           P+    P  +   ++    PLM     ++ P G+  YW T+NV +  QQ
Sbjct: 203 PEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLFYWLTSNVWTMGQQ 251

Length = 329

>gnl|CDD|179508 PRK02944, PRK02944, OxaA-like protein precursor; Validated

 Score =  117 bits (296), Expect = 2e-30
 Identities = 64/233 (27%), Positives = 111/233 (47%), Gaps = 48/233 (20%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRY----AGNQERIQLET 185
           +YG AII++T+++++   PL  KQ +ST AMQ LQP+++ ++++Y       Q+++Q E 
Sbjct: 58  NYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEM 117

Query: 186 SRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAAR 245
            +L+++ GVNPLAGCLP    +P+ I  Y A+   +        F W             
Sbjct: 118 MQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSEIS--KHSFLW------------- 162

Query: 246 QSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL-MKPPQTDDPAQKNTL 304
                      F  G           Y +LP++  ++ +   +L M      +P     L
Sbjct: 163 -----------FDLGQAD-------PYYILPIVAGITTFIQQKLMMAGTAGQNPQMAMML 204

Query: 305 LVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ-------QVWLRKLGGAK 350
            +   +P+MI  F+++ P+ LS+YW   N+   AQ       ++   K GG+K
Sbjct: 205 WL---MPIMILIFAINFPAALSLYWVVGNIFMIAQTYLIKGPEIKASKAGGSK 254

Length = 255

>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase component YidC; Provisional

 Score =  106 bits (266), Expect = 1e-25
 Identities = 58/242 (23%), Positives = 111/242 (45%), Gaps = 34/242 (14%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLY 189
           ++  +++ L   ++   +    +Q+ +T  MQ LQP+IKA+Q++Y  +++++ LE  +L 
Sbjct: 31  AWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQKMALEMQKLQ 90

Query: 190 RQAGVNPLAGCLPTLATIPVWIGLYQAL-------SNVANEGLLTEGFFWIPS-LSGPTT 241
           ++ G NP+ GCLP LA IPV++GL+  L       +     G+  E     P+ +     
Sbjct: 91  KEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAED 150

Query: 242 IA----ARQSGSGIS--------WLLPFVDGHPPLGWHDTAAYLVLPVLLVVS------Q 283
           +     AR  G+ +S         L  FVD             + +P++++         
Sbjct: 151 VQSFLDARLFGAPLSAYITMPRSGLDAFVDFTRT-----NIILVGVPLMIIAGVATHFNS 205

Query: 284 YASMELMKPPQTDDP--AQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV 341
            AS+         +P  A  N L ++   PL +      +P  + +YW +NN+ +  QQ 
Sbjct: 206 RASVARQSAEAAANPQTAMMNKLALW-VFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQH 264

Query: 342 WL 343
           ++
Sbjct: 265 YV 266

Length = 304

>gnl|CDD|235058 PRK02654, PRK02654, putative inner membrane protein translocase component YidC; Provisional

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 45/120 (37%), Positives = 68/120 (56%), Gaps = 16/120 (13%)

Query: 105 GFISEAMEFVLKILKD---GIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQ 161
           GFIS  +  +L IL D   GI    VP SYG AI+ LT++++ A +PL+   + +   M+
Sbjct: 6   GFISNNV--MLPIL-DFFYGI----VP-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMK 57

Query: 162 NLQP----KIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQAL 217
             QP    +   IQ+RY  + ++ Q E  +L ++ G NPLAGCLP L  +P+   L+  L
Sbjct: 58  IAQPVMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATL 116

Length = 375

>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase component YidC; Validated

 Score = 76.0 bits (187), Expect = 7e-15
 Identities = 63/241 (26%), Positives = 103/241 (42%), Gaps = 37/241 (15%)

Query: 130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN------QERIQL 183
           ++  ++  L + V+    P T +Q +S     +++PK KA+++ Y G       +E  Q 
Sbjct: 31  AWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASIRELQQK 90

Query: 184 ETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTT 241
           +   L ++ G NPLAGC+P L  IPV++GLYQ L  +A    GL       I  L+    
Sbjct: 91  Q-KDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEV 149

Query: 242 ---IAARQSGSGISWLLPFVDGHPP-----LGW-HDTAAYLVLPVLLVVSQYA----SME 288
              +  R         LP     P      LG    T    VLP+ +  + +     +M 
Sbjct: 150 ESFLQGRVFNVP----LPAYVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMS 205

Query: 289 LMKPPQTDDPAQKNTLLVFKFL----------PLMIGYFSLSVPSGLSIYWFTNNVLSTA 338
             +  QT+D      + + KFL          PL +G      P+ +++YW  NN+ +  
Sbjct: 206 TYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLSLGLTG-PFPTAIALYWVANNLWTLI 264

Query: 339 Q 339
           Q
Sbjct: 265 Q 265

Length = 429

>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional

 Score = 72.5 bits (178), Expect = 4e-14
 Identities = 61/252 (24%), Positives = 100/252 (39%), Gaps = 53/252 (21%)

Query: 102 GW-FGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQV-ESTL- 158
           G+ + F+   M + +        A ++   +G AII++T+IV++   PL   Q  ++T  
Sbjct: 35  GFIWNFLGAPMSYFIDYF-----ANNLGLGFGLAIIIVTIIVRLIILPLGLYQSWKATYQ 89

Query: 159 --AMQNLQPKIKAIQQRY--AGNQER---IQLETSRLYRQAGVNPLA--GCLPTLATIPV 209
              M  L+P  + I +R   A  QE     Q E     R+ G++ L   GCLP L  +P 
Sbjct: 90  SEKMAYLKPVFEPINERLKNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPF 149

Query: 210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDT 269
           +  LY A      +G+ T  F  I                              LG    
Sbjct: 150 FSALYFAAQY--TKGVSTSTFLGI-----------------------------DLGSPSL 178

Query: 270 AAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYW 329
               ++ VL     + SM  +   Q +    K  + +   +P+M+  FS S P+G+ +YW
Sbjct: 179 VLTAIIGVLYFFQSWLSMMGVPEEQRE--QMKAMMYM---MPIMMVVFSFSSPAGVGLYW 233

Query: 330 FTNNVLSTAQQV 341
                 S  QQ+
Sbjct: 234 LVGGFFSIIQQL 245

Length = 307

>gnl|CDD|235012 PRK02201, PRK02201, putative inner membrane protein translocase component YidC; Provisional

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 50/234 (21%), Positives = 90/234 (38%), Gaps = 61/234 (26%)

Query: 133 FAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG------NQERIQLETS 186
            AII++ +I+++ +F +T K   +    + LQ K   I  +Y         ++R Q E  
Sbjct: 135 LAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQ 194

Query: 187 RLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQ 246
            LY++  ++P +  +    T+P++I +Y+ + +             +PS+    T     
Sbjct: 195 ELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQS-------------LPSIK--VTTWLGI 239

Query: 247 SGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ----------TD 296
             S  SW   F        W     YL + +++V  Q  S  L   PQ          T 
Sbjct: 240 DLSATSWQEIFAG-----NW----IYLPILIIVVPVQALSQLL---PQILNKKKNKERTL 287

Query: 297 DPAQKNTL-----------LVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQ 339
           +  +K  L           +VF F       F +   +G+ IYW    + +  Q
Sbjct: 288 NVKEKEALKKQNKTQNIISIVFIF-------FGVIFAAGVQIYWIIGGIWTILQ 334

Length = 357

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	453
PRK01001	795	putative inner membrane protein translocase compon	100.0
PRK02944	255	OxaA-like protein precursor; Validated	100.0
PRK00145	223	putative inner membrane protein translocase compon	100.0
PRK01318	521	membrane protein insertase; Provisional	100.0
PRK01315	329	putative inner membrane protein translocase compon	100.0
PRK01622	256	OxaA-like protein precursor; Validated	100.0
PRK02463	307	OxaA-like protein precursor; Provisional	100.0
TIGR03592	181	yidC_oxa1_cterm membrane protein insertase, YidC/O	100.0
PRK03449	304	putative inner membrane protein translocase compon	100.0
PRK02201	357	putative inner membrane protein translocase compon	100.0
PF02096	198	60KD_IMP: 60Kd inner membrane protein; InterPro: I	100.0
COG0706	314	YidC Preprotein translocase subunit YidC [Intracel	100.0
PRK00247	429	putative inner membrane protein translocase compon	100.0
PRK02654	375	putative inner membrane protein translocase compon	100.0
KOG1239	372	consensus Inner membrane protein translocase invol	99.92
KOG1239	372	consensus Inner membrane protein translocase invol	99.04
COG1422	201	Predicted membrane protein [Function unknown]	96.13

>PRK01001 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.1e-53  Score=461.20  Aligned_cols=242  Identities=31%  Similarity=0.566  Sum_probs=199.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 012924          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (453)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~e  179 (453)
                      .+|||++|+.|+.+++.++...+..+  ..+||++||++||+||++++||+++|+++++||+.|||+|++||+|||+|++
T Consensus       547 ~~GWf~fI~~Pia~~L~~ll~~fh~l--~GnwGlAIILlTIIVRLlLlPLtiKS~kSmaKMq~LQPemqeIQeKYKdD~q  624 (795)
T PRK01001        547 FRGFFSFITEPFAALLFIIMKFFKFL--TGSWGISIILLTVFLKLLLYPLNAWSIRSMRRMQKLSPYIQEIQQKYKKEPK  624 (795)
T ss_pred             hccHHHHHHHHHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhHHHHHHHHHhHhHHH
Confidence            36999999999876664443333222  2379999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcc--cccCCcCchhHhhhhcCCCcccccc-
Q 012924          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF--WIPSLSGPTTIAARQSGSGISWLLP-  256 (453)
Q Consensus       180 k~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gfl--Wi~dLt~pD~i~a~~~g~~~~w~~p-  256 (453)
                      |+|+|+|+|||||||||++||||+|+|+||||++|++|+++.+  +...+|+  |++||+.+|++        +.|..| 
T Consensus       625 K~QqEmMkLYKe~GVNPl~GCLPmLIQmPIFfALY~vL~~sie--LRgasFLpgWI~DLSapDpl--------f~~~~~i  694 (795)
T PRK01001        625 RAQMEIMALYKTNKVNPITGCLPLLIQLPFLIAMFDLLKSSFL--LRGASFIPGWIDNLTAPDVL--------FSWETPI  694 (795)
T ss_pred             HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhHH--hcCCchhhhhHhhccCCCcc--------ccccccc
Confidence            9999999999999999999999999999999999999998754  7788898  99999999953        233322 


Q ss_pred             -ccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCC--CCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 012924          257 -FVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQ--TDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN  333 (453)
Q Consensus       257 -~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~--~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSn  333 (453)
                       |++          .++.||||++++++|++++++....  ..++.+++++.|+++||+|+++|++++|+||+|||++||
T Consensus       695 ~FiG----------d~i~ILPILmgvtmflqqkls~~~~~dp~t~qq~Qqk~M~~iMPImf~f~f~~fPSGL~LYW~tSN  764 (795)
T PRK01001        695 WFIG----------NEFHLLPILLGVVMFAQQKISSLKRKGPVTDQQRQQEAMGTMMALLFTFMFYNFPSGLNIYWLSSM  764 (795)
T ss_pred             cccc----------cchhHHHHHHHHHHHHHHHhcccCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence             221          2678999999999999999864321  112234455677789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCccccchhhhHhhhhhcc
Q 012924          334 VLSTAQQVWLRKLGGAKPVVTENASEIITAGRAKR  368 (453)
Q Consensus       334 l~siiQ~~~lrk~~~~~~~~~~~~~~~~~~~~~k~  368 (453)
                      +++++||+++++.++.+.     .+++++++++|.
T Consensus       765 l~SI~QQ~iI~k~~~~kK-----i~a~ie~nkkk~  794 (795)
T PRK01001        765 LLGVIQQWVTNKILDSKH-----LKNEVVPNKKKH  794 (795)
T ss_pred             HHHHHHHHHHHhhcchhH-----HHHHHHhhhhcc
Confidence            999999999999744332     356677766543

>PRK02944 OxaA-like protein precursor; Validated

Probab=100.00  E-value=9.9e-53  Score=412.88  Aligned_cols=209  Identities=28%  Similarity=0.638  Sum_probs=187.3

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcC
Q 012924           98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN  177 (453)
Q Consensus        98 ~~~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D  177 (453)
                      +.+|.|+++|..|++++++++|+.+   |  .+||++||++|+++|++++|++++|+++++||+++|||+++||+||++|
T Consensus        31 ~~~g~~~~~~~~p~~~~l~~i~~~~---g--~~wg~aIi~~TiivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~  105 (255)
T PRK02944         31 KSTGFWNEYFVYPLSQLITYFANLF---G--SNYGLAIIVVTLLIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSK  105 (255)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHh---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCC
Confidence            4567778999999999999999864   3  4699999999999999999999999999999999999999999999874


Q ss_pred             ----HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccc
Q 012924          178 ----QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW  253 (453)
Q Consensus       178 ----~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w  253 (453)
                          ++++|+|+++|||||||||++||+|+|+|+||||++|++++++.+  +.++||+|+ ||+.+|             
T Consensus       106 ~~~~~~k~~~e~~~Lyk~~gvnP~~g~lp~liQ~Pifi~lf~~i~~~~~--l~~~~flW~-dLs~~D-------------  169 (255)
T PRK02944        106 DQATQQKLQQEMMQLFQKNGVNPLAGCLPIFIQMPILIAFYHAIMRTSE--ISKHSFLWF-DLGQAD-------------  169 (255)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhhHH--HhhcCCCcc-ccCcch-------------
Confidence                567899999999999999999999999999999999999999864  778999999 999887             


Q ss_pred             cccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 012924          254 LLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN  333 (453)
Q Consensus       254 ~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSn  333 (453)
                                       ||++||+++++++++++++......  ..+.+|+.|+++||+|+++|+.++|+|+++||++||
T Consensus       170 -----------------p~~iLPil~~~~~~~~~~~~~~~~~--~~~~~~~~m~~i~p~~~~~~~~~~Pagl~lYw~~s~  230 (255)
T PRK02944        170 -----------------PYYILPIVAGITTFIQQKLMMAGTA--GQNPQMAMMLWLMPIMILIFAINFPAALSLYWVVGN  230 (255)
T ss_pred             -----------------HHHHHHHHHHHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                             7899999999999999887432111  122346778999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 012924          334 VLSTAQQVWLRKL  346 (453)
Q Consensus       334 l~siiQ~~~lrk~  346 (453)
                      +|+++|++++++.
T Consensus       231 ~~~i~Q~~~l~~~  243 (255)
T PRK02944        231 IFMIAQTYLIKGP  243 (255)
T ss_pred             HHHHHHHHHHcCc
Confidence            9999999999873

>PRK00145 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=3.1e-52  Score=402.10  Aligned_cols=210  Identities=32%  Similarity=0.613  Sum_probs=187.1

Q ss_pred             hHHHHHHHHHHHHHHHhhccccC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHH
Q 012924          104 FGFISEAMEFVLKILKDGIDAVH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERI  181 (453)
Q Consensus       104 f~~i~~p~e~vL~~i~~~l~~lg--lp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~ek~  181 (453)
                      +++|.+++..+++++|+++..++  .+++||++||++|+++|++++|++++|+++++||+++|||+++||+|||+|++++
T Consensus         2 ~~~i~~~~~~~l~~~~~~~~~~~~~~g~~w~~sIi~~tiivR~~l~Pl~~~q~~~~~km~~iqP~~~~i~~k~k~d~~~~   81 (223)
T PRK00145          2 MRYLNNAFVQFFKFIHGFVSSVISNPNFSYGIAIILVTLIIRLLILPLNIKQTKSSLRMNEIQPEIKKLQAKYKNDPQKL   81 (223)
T ss_pred             chHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHH
Confidence            45677777777777777654321  2356999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccccccccCCC
Q 012924          182 QLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGH  261 (453)
Q Consensus       182 q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w~~p~v~g~  261 (453)
                      |+|+++|||||||||++||+|+|+|+|||+++|+++|++++  +.++||+|++||+.+|                     
T Consensus        82 ~~e~~~Lyk~~~inp~~~~lp~liQiPif~~l~~~i~~~~~--~~~~~flW~~dLt~~D---------------------  138 (223)
T PRK00145         82 QQEMMKLYKEKGVNPLGGCLPLLIQWPILIALYYVFNNLTG--INGVSFLWIKDLAKPD---------------------  138 (223)
T ss_pred             HHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhhh--ccCCCccChhhccCcc---------------------
Confidence            99999999999999999999999999999999999999864  7889999999999887                     


Q ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHH
Q 012924          262 PPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQV  341 (453)
Q Consensus       262 ~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~siiQ~~  341 (453)
                               ||++||+++++++|++++.+.+.  +....+.++.|+++||+++++++.++|+|+++||++||+|+++|++
T Consensus       139 ---------p~~iLPil~~~~~~l~~~~~~~~--~~~~~~~~k~m~~~~~i~~~~~~~~~Pagl~lYW~~s~~~si~Q~~  207 (223)
T PRK00145        139 ---------ITWILPILSGATTYLSGYLMTKA--DSSQAGQMKTMNIGMSIFMGVMSWKFKSALVLYWVIGNLIQIIQTY  207 (223)
T ss_pred             ---------hHHHHHHHHHHHHHHHHHHcCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                     68999999999999999886543  1233446788999999999999999999999999999999999999


Q ss_pred             HHHHhc
Q 012924          342 WLRKLG  347 (453)
Q Consensus       342 ~lrk~~  347 (453)
                      ++|++.
T Consensus       208 ~l~~~~  213 (223)
T PRK00145        208 FIKKLE  213 (223)
T ss_pred             HHHhhc
Confidence            999863

>PRK01318 membrane protein insertase; Provisional

Probab=100.00  E-value=2.1e-51  Score=437.51  Aligned_cols=208  Identities=38%  Similarity=0.755  Sum_probs=189.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 012924          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (453)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~e  179 (453)
                      ++||+.+|+.|+.++|+++|.++   |   +||++||++||++|++++|++++|+++++||+++||+|++||+||++|++
T Consensus       298 ~~G~~~~~~~pl~~~L~~i~~~~---g---~wg~aIillTiiiR~il~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~  371 (521)
T PRK01318        298 DYGWLWFITKPLFWLLDFLHSFV---G---NWGWAIILLTIIVKLLLFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQ  371 (521)
T ss_pred             ccCcHHHHHHHHHHHHHHHHHhc---c---cHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHH
Confidence            58999999999999999999864   2   79999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcc-cccCCcCchhHhhhhcCCCcccccccc
Q 012924          180 RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPFV  258 (453)
Q Consensus       180 k~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gfl-Wi~dLt~pD~i~a~~~g~~~~w~~p~v  258 (453)
                      ++|+|+|+|||||||||++||+|+|+|+||||++|++++++.+  +.+++|+ ||+||+.+|                  
T Consensus       372 k~~~e~~~LYKk~~vnPl~gclp~liQiPifialy~~l~~~~e--l~~~~fl~Wi~DLs~~D------------------  431 (521)
T PRK01318        372 KMQQEMMELYKKEKVNPLGGCLPILIQIPIFFALYKVLLVSIE--LRHAPFIGWIHDLSAPD------------------  431 (521)
T ss_pred             HHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHHHHH--hccCchheeeccccccc------------------
Confidence            9999999999999999999999999999999999999999865  7889998 999999988                  


Q ss_pred             CCCCCCCcchhHHHHHH-----HHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhh
Q 012924          259 DGHPPLGWHDTAAYLVL-----PVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNN  333 (453)
Q Consensus       259 ~g~~~lgw~d~~py~IL-----PIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSn  333 (453)
                                  ||+||     |+++++++|++++++..+  .+++|   +.||.+||+++++|+.++|+||++||++||
T Consensus       432 ------------p~~il~~~~lPil~~~~~~~~~~l~~~~--~~~~q---~kim~~mpi~~~~~~~~~PagL~lYW~~sn  494 (521)
T PRK01318        432 ------------PYFILHIGLLPILMGITMFLQQKLNPTP--TDPMQ---AKIMKFMPLIFTFFFLSFPAGLVLYWIVNN  494 (521)
T ss_pred             ------------cchhHHHHHHHHHHHHHHHHHHHhcCCC--CCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        44555     999999999999986433  35543   345566999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q 012924          334 VLSTAQQVWLRKLGGAK  350 (453)
Q Consensus       334 l~siiQ~~~lrk~~~~~  350 (453)
                      +++++|++++++..+.+
T Consensus       495 ~~si~Q~~~l~~~~~~~  511 (521)
T PRK01318        495 LLTIIQQYLINRRLEKK  511 (521)
T ss_pred             HHHHHHHHHHhhhcccc
Confidence            99999999999975544

>PRK01315 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.4e-50  Score=409.23  Aligned_cols=244  Identities=26%  Similarity=0.462  Sum_probs=182.5

Q ss_pred             CCchHHHHHHHHHHH----HHHHhhcccc-C--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHH
Q 012924          101 GGWFGFISEAMEFVL----KILKDGIDAV-H--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQR  173 (453)
Q Consensus       101 ~gwf~~i~~p~e~vL----~~i~~~l~~l-g--lp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkK  173 (453)
                      ++||++|.+|++|++    .++|..+..+ |  .+++||+|||++|+++|++++||+++|+++++||+++||||++||+|
T Consensus         5 ~~~~~~i~~P~~~~l~~il~~~h~ll~~~~~~~tGl~w~~aIi~~Ti~vR~~l~Pl~i~q~~~~~km~~lqPe~~~iq~k   84 (329)
T PRK01315          5 ADFGSAIMTPLYWVISGILVLFHTLLGFLFGPDSGLTWVLSIVGLVIVIRALLIPLFVKQIKSQRNMQEIQPKMKKIQEK   84 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence            578999999988877    4456554322 2  12469999999999999999999999999999999999999999999


Q ss_pred             hhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccc
Q 012924          174 YAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISW  253 (453)
Q Consensus       174 yk~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w  253 (453)
                      |++|++++++|+++|||||||||++||+|+|+|+||||++|++||++++.+ ... .+|.+++...- ..+...|..+.-
T Consensus        85 yk~~~~~~~~e~~~Lykk~ginp~~gclp~liQ~Pif~alf~~l~~~~~~~-~~~-~~~~~~~~~s~-~~~~~fg~~L~~  161 (329)
T PRK01315         85 YKGDRERMSQEMMKLYKETGTNPLSSCLPLLLQMPIFFALYRVLDSAASRG-DGI-GPINPPLLESF-RHAHIFGAPLAA  161 (329)
T ss_pred             HHhHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccc-cchhhhHHHhh-hccccccccccc
Confidence            999999999999999999999999999999999999999999999876421 111 22333332100 000011111110


Q ss_pred             cccccCCCCCCCcc-hhHHHHHHHHHHHHHHHHHHHh-cC----CCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 012924          254 LLPFVDGHPPLGWH-DTAAYLVLPVLLVVSQYASMEL-MK----PPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI  327 (453)
Q Consensus       254 ~~p~v~g~~~lgw~-d~~py~ILPIL~~~s~~ls~ki-~~----~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~L  327 (453)
                        ++... ...|+. ..+.+++||+++++++|++++. +.    +...++++.+++|.|+++||+|+++|+.++|+||+|
T Consensus       162 --~f~~~-~~~~~~~~~ii~~iL~il~~~~~~~~q~~~~~k~~~~~~~~~~~~~~~K~M~~imPim~~~~~~~fPaGL~L  238 (329)
T PRK01315        162 --TFLQA-LNAGNTAVQVVAAVLIILMSASQFITQLQLMTKNMPPEAKTGPMAQQQKMLLYLFPLMFLVSGIAFPVGVLF  238 (329)
T ss_pred             --ccccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              11000 001222 2345789999999999988653 21    122235666678889999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhcCCC
Q 012924          328 YWFTNNVLSTAQQVWLRKLGGAK  350 (453)
Q Consensus       328 YWitSnl~siiQ~~~lrk~~~~~  350 (453)
                      ||++||+|+++|++++.+.++.+
T Consensus       239 YW~~snl~si~Qq~~v~r~~p~p  261 (329)
T PRK01315        239 YWLTSNVWTMGQQFYVIRNNPTP  261 (329)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999877765443

>PRK01622 OxaA-like protein precursor; Validated

Probab=100.00  E-value=2e-50  Score=396.84  Aligned_cols=212  Identities=27%  Similarity=0.521  Sum_probs=187.7

Q ss_pred             ccCCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhhcHHHHHHHHH
Q 012924           98 QKNGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQR  173 (453)
Q Consensus        98 ~~~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~ks----s~kMq~LqPel~~IqkK  173 (453)
                      +.+|+|.+++.+|+.++++++|+++   |  .+||++|+++|+++|++++|++++|+|+    ++||+++|||+++||+|
T Consensus        32 ~~~~~~~~~~~~p~~~ll~~l~~~~---~--~~wg~aIil~TiiiR~illPl~i~q~ks~~~~~~km~~iqP~l~~iq~k  106 (256)
T PRK01622         32 HSDGFFDHYFVYPFSFLIQFVAHHI---G--GSYGIAIIIVTLIIRSLMIPLAVSQYKSQRGMQEKMAVMKPELDKIQAK  106 (256)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHh---c--ccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCHHHHHHHHH
Confidence            4667778999999999999999875   3  3699999999999999999999999999    89999999999999999


Q ss_pred             hhc--CHH---HHHHHHHHHHHHcCCCCCC-CchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhc
Q 012924          174 YAG--NQE---RIQLETSRLYRQAGVNPLA-GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS  247 (453)
Q Consensus       174 yk~--D~e---k~q~E~~kLYKk~gvnPl~-GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~  247 (453)
                      |++  |++   ++|+|+++|||||||||++ ||+|+|+|+||||++|+++|++.  ++.++||+|+ ||+.+|       
T Consensus       107 yk~~~d~~~~~~~~~e~~~Lyk~~gi~P~~~g~lp~liQ~Pif~~lf~~lr~~~--~l~~~~flW~-dLs~~D-------  176 (256)
T PRK01622        107 LKVTKDLEKQKEYQKEMMELYKSGNINPLAMGCLPLLIQMPILSAFYYAIRRTE--EIASHSFLWF-NLGHAD-------  176 (256)
T ss_pred             HhccCCHHHHHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHHHHHhCh--hccCCCceee-CCcchh-------
Confidence            987  544   5789999999999999999 99999999999999999999975  4889999999 898764       


Q ss_pred             CCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 012924          248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI  327 (453)
Q Consensus       248 g~~~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~L  327 (453)
                                               +|||++++++++++++++.+.......++++|.|++++|+++++++.++|+|+++
T Consensus       177 -------------------------~ILPil~~~~~~~~~~~~~~~~~~~~q~~~~k~m~~~~pi~~~~~~~~~Psgl~l  231 (256)
T PRK01622        177 -------------------------HILPIIAGLTYFIQMKVSQSNGTSPEQVQMLKIQGIMMPAMILFMSFAAPSALVL  231 (256)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     4899999999999998765332222334567889999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhcCC
Q 012924          328 YWFTNNVLSTAQQVWLRKLGGA  349 (453)
Q Consensus       328 YWitSnl~siiQ~~~lrk~~~~  349 (453)
                      ||++||+|+++|++++++.+..
T Consensus       232 YW~~snl~si~Q~~~l~~~~~~  253 (256)
T PRK01622        232 YWITGGLFLMGQTIVLRKVMER  253 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999997443

>PRK02463 OxaA-like protein precursor; Provisional

Probab=100.00  E-value=4.2e-50  Score=403.11  Aligned_cols=208  Identities=26%  Similarity=0.485  Sum_probs=181.5

Q ss_pred             CCCch-HHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHH----HHHHHhhcHHHHHHHHHh
Q 012924          100 NGGWF-GFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVES----TLAMQNLQPKIKAIQQRY  174 (453)
Q Consensus       100 ~~gwf-~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~ks----s~kMq~LqPel~~IqkKy  174 (453)
                      .+||+ ++++.|+.++++++|+.+   |  .+||+|||++||+||++++||+++|+++    ++||+++|||+++||+||
T Consensus        33 ~~g~~~~~l~~p~~~~l~~i~~~~---g--~~~GlaII~~TiivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Ky  107 (307)
T PRK02463         33 PTGFIWNFLGAPMSYFIDYFANNL---G--LGFGLAIIIVTIIVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERL  107 (307)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHc---C--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHH
Confidence            36775 799999999999999764   3  3699999999999999999999988865    689999999999999999


Q ss_pred             hcC-----HHHHHHHHHHHHHHcCCCCCC--CchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhc
Q 012924          175 AGN-----QERIQLETSRLYRQAGVNPLA--GCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQS  247 (453)
Q Consensus       175 k~D-----~ek~q~E~~kLYKk~gvnPl~--GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~  247 (453)
                      +++     ++++|+|+++|||||||||++  ||+|+|+|+|||+|+|++++..  +++.+++|+|+ ||+.||       
T Consensus       108 k~~~~~~~~~~~q~em~~lyke~ginp~~~~GCLP~LIQ~PIf~aly~ai~~~--~~l~~~~flwi-dL~~p~-------  177 (307)
T PRK02463        108 KNATTQEEKMAAQTELMAAQRENGISMLGGIGCLPLLIQMPFFSALYFAAQYT--KGVSTSTFLGI-DLGSPS-------  177 (307)
T ss_pred             hcCCChHHHHHHHHHHHHHHHHcCCCCccccchHHHHHHHHHHHHHHHHHhcc--hhhccCCeeee-ecCchh-------
Confidence            863     235689999999999999998  8999999999999999999975  46889999999 888553       


Q ss_pred             CCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHH
Q 012924          248 GSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSI  327 (453)
Q Consensus       248 g~~~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~L  327 (453)
                                               ++||++++++++++++++..... +...++||.|+++||+|+++|++++|+||++
T Consensus       178 -------------------------~iLpii~~v~~~~q~~~~~~~~~-~~q~~~mk~m~~~~Pim~~~~~~~~PagL~l  231 (307)
T PRK02463        178 -------------------------LVLTAIIGVLYFFQSWLSMMGVP-EEQREQMKAMMYMMPIMMVVFSFSSPAGVGL  231 (307)
T ss_pred             -------------------------HHHHHHHHHHHHHHHHHhccCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                                     68999999999999887543222 3344568899999999999999999999999


Q ss_pred             HHHhhhHHHHHHHHHHHHhcC
Q 012924          328 YWFTNNVLSTAQQVWLRKLGG  348 (453)
Q Consensus       328 YWitSnl~siiQ~~~lrk~~~  348 (453)
                      ||++||+|+++|++++++++.
T Consensus       232 YW~~snlfsi~Q~~i~~~~~~  252 (307)
T PRK02463        232 YWLVGGFFSIIQQLITTYILK  252 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999998754

>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain

Probab=100.00  E-value=2.9e-49  Score=369.79  Aligned_cols=181  Identities=40%  Similarity=0.772  Sum_probs=168.4

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 012924          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (453)
Q Consensus       130 swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPI  209 (453)
                      |||++|+++|+++|++++|++++|+++++||+++|||+++||+||++|++++++|+++||||||+||++||+|+|+|+||
T Consensus         1 ~w~~sIi~~ti~vR~~~~Pl~~~~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~p~~~~lp~liQ~Pi   80 (181)
T TIGR03592         1 NWGLAIILLTIIVRLLLLPLTLKQYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVNPLGGCLPLLIQMPI   80 (181)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHh
Q 012924          210 WIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMEL  289 (453)
Q Consensus       210 figlf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki  289 (453)
                      |+++|+++|++.  ++.++||+|++||+.+|                              ||++||+++++++++++++
T Consensus        81 f~~~~~~lr~~~--~l~~~~flW~~dL~~~D------------------------------p~~iLPii~~~~~~~~~~~  128 (181)
T TIGR03592        81 FIALYQVLRRSI--ELRHAPFLWIKDLSAPD------------------------------PYYILPILMGATMFLQQKL  128 (181)
T ss_pred             HHHHHHHHHhhH--HhccCCCcCccccCccc------------------------------HHHHHHHHHHHHHHHHHHh
Confidence            999999999985  48899999999999887                              7899999999999999998


Q ss_pred             cCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHHH
Q 012924          290 MKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRK  345 (453)
Q Consensus       290 ~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~siiQ~~~lrk  345 (453)
                      .....+ +  .+++|.|++++|+++++++.++|+|+++||++||+|+++|++++|+
T Consensus       129 ~~~~~~-~--~~~~k~m~~~~p~~~~~~~~~~pa~l~lYw~~s~~~sl~Q~~~l~~  181 (181)
T TIGR03592       129 SPSGPP-D--PAQQKIMMYIMPLMFLFFFLSFPAGLVLYWVVSNLFTIIQQLIINR  181 (181)
T ss_pred             cCCCCC-C--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            654222 2  2356788899999999999999999999999999999999999875

This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.

>PRK03449 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=6.6e-48  Score=386.42  Aligned_cols=232  Identities=23%  Similarity=0.406  Sum_probs=177.0

Q ss_pred             hHHHHHHHHHHHHHHHhhccc-cC--CCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHH
Q 012924          104 FGFISEAMEFVLKILKDGIDA-VH--VPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQER  180 (453)
Q Consensus       104 f~~i~~p~e~vL~~i~~~l~~-lg--lp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~ek  180 (453)
                      +.++.+|+.+++.++|..+.. +|  .+.+||+|||++|+++|++++|++++|+++++||+++|||+++||+||++|+++
T Consensus         2 l~~~~~P~~~~l~~~~~~~~~~l~~~~Gl~w~~aIil~TiivR~~l~Pl~i~q~ks~~km~~lqP~l~~iq~kyk~~~~~   81 (304)
T PRK03449          2 LDFIYYPVSAILWFWHKLFSFVLGPDNGFAWALSVMFLVFTLRALLYKPFVRQIRTTRKMQELQPQIKALQKKYGNDRQK   81 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHhhhhHHH
Confidence            567788999999998886542 11  134699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhh--cccc---------------------CCcccccCCc
Q 012924          181 IQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANE--GLLT---------------------EGFFWIPSLS  237 (453)
Q Consensus       181 ~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~--gl~~---------------------~gflWi~dLt  237 (453)
                      +++|+++|||||||||++||+|+|+|+|||+++|+++|+++..  +...                     ++|+|..   
T Consensus        82 ~~~e~~~Lyk~~gvnP~~gclP~liQlPi~~~ly~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sFl~~~---  158 (304)
T PRK03449         82 MALEMQKLQKEHGFNPILGCLPMLAQIPVFLGLFHVLRSFNRTGTGFGQLGMSVEENRNTPNYVFSAEDVQSFLDAR---  158 (304)
T ss_pred             HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccchhhccccccccccHHHHHHHhhhh---
Confidence            9999999999999999999999999999999999999998542  1111                     1333322   


Q ss_pred             CchhHhhhhcCCCcc-ccc-------cccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCC----CCCCCHHhH-HHH
Q 012924          238 GPTTIAARQSGSGIS-WLL-------PFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKP----PQTDDPAQK-NTL  304 (453)
Q Consensus       238 ~pD~i~a~~~g~~~~-w~~-------p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~----~~~~~p~qk-~mk  304 (453)
                              .+|..++ |.-       ++.+..   .++..+.++++||++++++|++++++..    .+..++.+. ++|
T Consensus       159 --------~~g~pL~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~Ila~v~t~~~~~~s~~~~~~~~~~~~~~~~m~k  227 (304)
T PRK03449        159 --------LFGAPLSAYITMPRSGLDAFVDFT---RTNIILVGVPLMIIAGVATHFNSRASVARQSAEAAANPQTAMMNK  227 (304)
T ss_pred             --------hcCCChHhhhcccchhhchhcccc---cchhHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcchHHHHH
Confidence                    1111111 110       010100   0111124567899999999999886421    111233333 457


Q ss_pred             HHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHHHhcCC
Q 012924          305 LVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLGGA  349 (453)
Q Consensus       305 ~m~~~mPlm~l~f~~~~PagL~LYWitSnl~siiQ~~~lrk~~~~  349 (453)
                      .|+++||+|+++|++++|+|+.|||++||+|+++||+++++..+.
T Consensus       228 ~M~~~mP~m~~~~~~~~Pagl~LYW~~snl~~i~Qq~~i~~~~~~  272 (304)
T PRK03449        228 LALWVFPLGVLVGGPFLPLAILLYWVSNNIWTFGQQHYVFGKIDK  272 (304)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            889999999999999999999999999999999999999875444

>PRK02201 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=7.3e-48  Score=392.74  Aligned_cols=222  Identities=19%  Similarity=0.361  Sum_probs=183.2

Q ss_pred             CCC-chHHHHHHHHHHHHHHH--hhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc
Q 012924          100 NGG-WFGFISEAMEFVLKILK--DGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG  176 (453)
Q Consensus       100 ~~g-wf~~i~~p~e~vL~~i~--~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~  176 (453)
                      ++| |+++|+.|+.+++.+++  ..+. .+.+++||+|||++|+++|++++|++++|+++++||+++|||+++||+||++
T Consensus       100 ~~G~f~~~~v~P~~~il~~i~~~~~~~-~~~G~~w~laII~~TiivRlillPl~~k~~~s~~km~~lqPel~~Iq~Kyk~  178 (357)
T PRK02201        100 KYGPFYGLFVYPIAQIILSIMASQSLS-ELYGWSTILAIIVVVLIIRLISFLITFKSTFNQEKQEELQGKKAKIDAKYKD  178 (357)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            455 66999999999999996  2221 1234568999999999999999999999999999999999999999999997


Q ss_pred             C------HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCC
Q 012924          177 N------QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSG  250 (453)
Q Consensus       177 D------~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~  250 (453)
                      |      ++++|+|+++|||||||||++||+|+|+|+|||+|+|++++.+.+  +....|+|+ ||+.+|..        
T Consensus       179 ~~~d~~~~~k~q~e~~~Lykk~ginP~~gclP~LiQ~Pif~aly~vl~~~~~--l~~~~flgi-dLs~~~~~--------  247 (357)
T PRK02201        179 YKKDKQMKQRKQQEIQELYKKHNISPFSPFVQMFVTLPIFIAVYRVVQSLPS--IKVTTWLGI-DLSATSWQ--------  247 (357)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhHh--hccCCCccc-ccCCCChh--------
Confidence            6      678999999999999999999999999999999999999998854  778899999 99987621        


Q ss_pred             ccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcC----C----C---CCCCHHhHHHHHHHHHHHHHHHHHhh
Q 012924          251 ISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMK----P----P---QTDDPAQKNTLLVFKFLPLMIGYFSL  319 (453)
Q Consensus       251 ~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~----~----~---~~~~p~qk~mk~m~~~mPlm~l~f~~  319 (453)
                        ..+           ++..+|+++++++++++++++.+++    .    .   ..+.++++.++.|+++||+++++|++
T Consensus       248 --~~~-----------~~~~~~l~l~ii~~~~~~ls~~l~~~l~~kk~~~~~~~~~~~~~~k~~~~m~~impi~~~~~~~  314 (357)
T PRK02201        248 --EIF-----------AGNWIYLPILIIVVPVQALSQLLPQILNKKKNKERTLNVKEKEALKKQNKTQNIISIVFIFFGV  314 (357)
T ss_pred             --hhc-----------cccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccCCchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence              000           1112567777777877777765431    1    0   11122344577899999999999999


Q ss_pred             hhhhhhHHHHHhhhHHHHHHHHHHHHh
Q 012924          320 SVPSGLSIYWFTNNVLSTAQQVWLRKL  346 (453)
Q Consensus       320 ~~PagL~LYWitSnl~siiQ~~~lrk~  346 (453)
                      ++|+||.|||++||+|+++|+++++++
T Consensus       315 ~~PaGL~LYW~~snl~tI~Qq~~i~~~  341 (357)
T PRK02201        315 IFAAGVQIYWIIGGIWTILQTLGIHYF  341 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999985

>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes

Probab=100.00  E-value=5.3e-48  Score=363.81  Aligned_cols=193  Identities=39%  Similarity=0.730  Sum_probs=177.2

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHH
Q 012924          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQERIQLETSRLYRQAGVNPLAGCLPTLATIPV  209 (453)
Q Consensus       130 swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPI  209 (453)
                      |||++|+++|+++|++++|++++|+++++||+++|||+++|++||++|++++++|++++||||||||++||+|+|+|+||
T Consensus         2 sW~~aIil~ti~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~~~p~~~~~~~liq~Pi   81 (198)
T PF02096_consen    2 SWGLAIILTTILVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHGVNPLKGCLPPLIQIPI   81 (198)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhh-hccccCCcccccCCcCchhHhhhhcCCCccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHH
Q 012924          210 WIGLYQALSNVAN-EGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASME  288 (453)
Q Consensus       210 figlf~~Lr~ma~-~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~k  288 (453)
                      |+++|+++|++++ +++.++||+|++||+.+|+.                         ...||++||++++++++++++
T Consensus        82 f~~~~~~lr~~~~~~~~~~~g~lw~~dL~~~D~~-------------------------~~~p~~iLPil~~~~~~~~~~  136 (198)
T PF02096_consen   82 FIGLFRALRRMAEVPSLATGGFLWFPDLTAPDPT-------------------------MGLPYFILPILAGASMFLNQE  136 (198)
T ss_pred             HHHHHHHHHHHHHhcccccCceeChHhcCCCCcc-------------------------chhHHHHHHHHHHHHHHHHHH
Confidence            9999999999987 67889999999999999831                         123899999999999999999


Q ss_pred             hcCC--CCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHHHHHHHHHHhc
Q 012924          289 LMKP--PQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLSTAQQVWLRKLG  347 (453)
Q Consensus       289 i~~~--~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~siiQ~~~lrk~~  347 (453)
                      ++..  ...++...+++|.|++++|+++++++.++|+|+++||++||+|+++|++++|+.+
T Consensus       137 ~~~~~~~~~~~~~~~~~k~m~~~~~~~~~~~~~~~Paal~lYw~~s~~~~l~Q~~~l~~~~  197 (198)
T PF02096_consen  137 LSMKNSKQKSPQQAKMMKIMLYIMPLMFLFFTSFFPAALFLYWITSNLFSLLQTLILRRPF  197 (198)
T ss_pred             HHHhccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            8642  2223455667889999999999999999999999999999999999999999864

Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane

>COG0706 YidC Preprotein translocase subunit YidC [Intracellular trafficking and secretion]

Probab=100.00  E-value=1.7e-47  Score=385.87  Aligned_cols=215  Identities=35%  Similarity=0.630  Sum_probs=189.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhh-cCH
Q 012924          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYA-GNQ  178 (453)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk-~D~  178 (453)
                      +.|||.++..++..++.++|...   |+  +||++||++|++||++++|++.++.++++||+++||++++||+||| +|+
T Consensus        84 ~~~~f~~~~~~~~~~~~~~~~~~---g~--n~G~sIi~~ti~vRl~i~Pl~~~~~~s~~km~~lqP~~~~i~~kyk~~~~  158 (314)
T COG0706          84 DYGWFWNILAPLFPLLLFIDSFS---GL--NWGLSIILLTIIVRLLIFPLSQKSTRSMAKMQELQPKIKEIQEKYKGTDK  158 (314)
T ss_pred             chhhHHHHHHHHHHHHHHHHHhc---Cc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHhCCCCH
Confidence            67999999988888888886543   33  7999999999999999999999999999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcc-cccCCcCchhHhhhhcCCCccccccc
Q 012924          179 ERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFF-WIPSLSGPTTIAARQSGSGISWLLPF  257 (453)
Q Consensus       179 ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gfl-Wi~dLt~pD~i~a~~~g~~~~w~~p~  257 (453)
                      +++|+|+|+|||||||||++||+|+++|+||||++|+++++..+  +...+|+ |+.||+.+|+.               
T Consensus       159 ~~~q~e~~~Lyk~~~vnPl~gclP~liQ~Pifialy~~l~~~~~--l~~~~f~~w~~dl~~~dp~---------------  221 (314)
T COG0706         159 QKQQQEMMKLYKKHKVNPLAGCLPLLIQMPIFIALYYVLRSTVE--LRGAPFLGWITDLSLPDPD---------------  221 (314)
T ss_pred             HHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHhccc--ccccchhhhhhcccCCCCc---------------
Confidence            99999999999999999999999999999999999999999865  7777887 99999987720               


Q ss_pred             cCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHHH
Q 012924          258 VDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLST  337 (453)
Q Consensus       258 v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~si  337 (453)
                                   ..+++||++++++|+++++...... ++..++++.|+++||+++.++++++|+||.+||++||+|++
T Consensus       222 -------------~~~~~pii~gv~~f~q~~ls~~~~~-~~q~~~~~~~~~impi~f~~~~~~~PaGL~LYW~~~n~fsi  287 (314)
T COG0706         222 -------------YILLLPILAGVTMFLQQKLSPRNLS-TPQDPQQKKMMYIMPIIFTFFFFNFPAGLVLYWIVSNLFSI  287 (314)
T ss_pred             -------------hhhHHHHHHHHHHHHHHHhccccCC-cccCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHH
Confidence                         1236699999999999998665322 23344677889999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCC
Q 012924          338 AQQVWLRKLGGAK  350 (453)
Q Consensus       338 iQ~~~lrk~~~~~  350 (453)
                      +||+++++.+..+
T Consensus       288 ~Qq~ii~~~~~~~  300 (314)
T COG0706         288 LQQYILNKPLEKK  300 (314)
T ss_pred             HHHHHHhhhhhhh
Confidence            9999999974433

>PRK00247 putative inner membrane protein translocase component YidC; Validated

Probab=100.00  E-value=9.9e-47  Score=391.31  Aligned_cols=251  Identities=23%  Similarity=0.352  Sum_probs=181.9

Q ss_pred             hHHHHHHHHHHHHHHHhhcc-ccCCC--cchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcC---
Q 012924          104 FGFISEAMEFVLKILKDGID-AVHVP--YSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGN---  177 (453)
Q Consensus       104 f~~i~~p~e~vL~~i~~~l~-~lglp--~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D---  177 (453)
                      +++|.+|+.++|.++|.++. .+|++  ++||++||++||+||++++||+++|+++++||+.+||+|++||+||+++   
T Consensus         2 ~~~~~~Pvs~vm~~~h~~~~~~~G~~~~l~W~isIi~ltiiVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~   81 (429)
T PRK00247          2 LDIFIYPVSGVMKLWHLLLHNVLGLDDSLAWFASLFGLVITVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDE   81 (429)
T ss_pred             ccHHHHHHHHHHHHHHHHHhccccCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCH
Confidence            56789999999999998876 35643  4599999999999999999999999999999999999999999999874   


Q ss_pred             --HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hccccCCcccccCCcCchhH---hhhhcCCC
Q 012924          178 --QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTI---AARQSGSG  250 (453)
Q Consensus       178 --~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~--~gl~~~gflWi~dLt~pD~i---~a~~~g~~  250 (453)
                        ++++|+|+++|||+|||||++||+|+|+|+|||||+|++|++|+.  +|+.+..+.|+.-|+..|.-   .++.+|..
T Consensus        82 e~~~~~qqe~~~LyKe~ginP~~gcLP~LIQiPIfigLy~vir~ma~~~~Gl~~~~~~~ig~l~~~~v~sfl~a~~fGvp  161 (429)
T PRK00247         82 ASIRELQQKQKDLNKEYGYNPLAGCVPALIQIPVFLGLYQVLLRMARPEGGLENPVHQPIGFLTSEEVESFLQGRVFNVP  161 (429)
T ss_pred             HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccccCCHHHHHHHHhccccCCC
Confidence              356889999999999999999999999999999999999999975  45554444566666655421   12233322


Q ss_pred             ccccccccCCC--CCCCcc-hhHHHHHHHHHHHHH--HHHHHHhcCC----C-CCCCH----HhHHHHHHHHHHHHHHHH
Q 012924          251 ISWLLPFVDGH--PPLGWH-DTAAYLVLPVLLVVS--QYASMELMKP----P-QTDDP----AQKNTLLVFKFLPLMIGY  316 (453)
Q Consensus       251 ~~w~~p~v~g~--~~lgw~-d~~py~ILPIL~~~s--~~ls~ki~~~----~-~~~~p----~qk~mk~m~~~mPlm~l~  316 (453)
                      ++- .+.....  -.+|.. ..+.+++||++++++  +++++.+..-    . ..+++    +++.|+.|++++|+|+++
T Consensus       162 L~~-~~sm~~e~~~~~~~~~~~v~~~ilPlii~a~vft~i~~~~s~~r~~~~~~~~~~~~~~~~k~m~~m~~~~Pim~~~  240 (429)
T PRK00247        162 LPA-YVSMPAEQLAYLGTTQATVLAFVLPLFIAAAVFTAINMAMSTYRSFQTNDHDSGFAVGMLKFLIVMAILAPIFPLS  240 (429)
T ss_pred             ccc-ccccchhhhhhccCCccchHHHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHhHHHHHH
Confidence            220 0000000  001111 112467888555544  4566554211    1 11223    445567778999999999


Q ss_pred             Hhhh--hhhhhHHHHHhhhHHHHHHHHH----HHHhcCCCCcccc
Q 012924          317 FSLS--VPSGLSIYWFTNNVLSTAQQVW----LRKLGGAKPVVTE  355 (453)
Q Consensus       317 f~~~--~PagL~LYWitSnl~siiQ~~~----lrk~~~~~~~~~~  355 (453)
                      ++++  +|+||+|||++||+|+++||++    ++++|...+.+.+
T Consensus       241 ~g~~~~~PaallLYWv~snlwtl~Qq~i~~~~l~~~~P~~~~~~~  285 (429)
T PRK00247        241 LGLTGPFPTAIALYWVANNLWTLIQNIIMYLILERKYPLTDEFKE  285 (429)
T ss_pred             HHHhccchHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCCcchHH
Confidence            7776  7999999999999999999994    5566555554433

>PRK02654 putative inner membrane protein translocase component YidC; Provisional

Probab=100.00  E-value=1.3e-38  Score=318.72  Aligned_cols=113  Identities=33%  Similarity=0.604  Sum_probs=105.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHH----HHHHHhh
Q 012924          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIK----AIQQRYA  175 (453)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~----~IqkKyk  175 (453)
                      |+||+.+..+++.++++++|.++     + +||++||++|++||++++||+++|+|+++||+.+||+|+    +||+||+
T Consensus         2 dfG~g~i~~~il~~iL~f~y~~v-----g-swGlAIIllTIIVRlIL~PLsikQ~KS~~KM~~LQPemqkk~~eIqeKYK   75 (375)
T PRK02654          2 DFGIGFISNNVMLPILDFFYGIV-----P-SYGLAIVALTLVIRFALYPLSAGSIRNMRRMKIAQPVMQKRQAEIQERYK   75 (375)
T ss_pred             CcchHHHHHhHHHHHHHHHHHhc-----c-hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCchhhhHHHHHHHHhc
Confidence            57887767789999999999753     3 799999999999999999999999999999999999985    7999999


Q ss_pred             cCHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHh
Q 012924          176 GNQERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSN  219 (453)
Q Consensus       176 ~D~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~  219 (453)
                      +|++++|+|+|+|||||| ||++||+|+|+|+|||+++|++||.
T Consensus        76 dDpqk~QqEmmkLYKE~G-NPlaGCLP~LIQmPIF~aLY~~LR~  118 (375)
T PRK02654         76 NDPQKQQEEMGKLMKEFG-NPLAGCLPLLVQMPILFALFATLRG  118 (375)
T ss_pred             CCHHHHHHHHHHHHHHcC-CChhhHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999 9999999999999999999999996

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.2e-24  Score=220.29  Aligned_cols=204  Identities=21%  Similarity=0.367  Sum_probs=171.5

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc---
Q 012924          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG---  176 (453)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~---  176 (453)
                      ..+|..  +..+.+.+..+|+..   |+|  ||.+|+..|+.+|.+++|+.++++++.+|++.+.|+|+++.++.+.   
T Consensus        78 ~~~~~p--~~~lq~~l~~~h~~~---g~p--ww~~i~~~t~~ir~~i~~~~~~~~~~~akls~~~~~mp~~~~~l~~a~~  150 (372)
T KOG1239|consen   78 LSSWRP--VATLQNELERLHVYS---GLP--WWASIVATTVLIRSLITPLLTNSQKNEAKLSKIFPEMPSLGEELGEAAQ  150 (372)
T ss_pred             hcccCc--hhHHHHHHHHHHHHh---CCc--chHHHHHhHhhHhhhhhhHHHhhhhHHHHHhhcCcccHHHHHHHHhhhc
Confidence            345544  345666777788764   666  7999999999999999999999999999999999999999998864   


Q ss_pred             --C-HHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhh--hccccCCcccccCCcCchhHhhhhcCCCc
Q 012924          177 --N-QERIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVAN--EGLLTEGFFWIPSLSGPTTIAARQSGSGI  251 (453)
Q Consensus       177 --D-~ek~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~--~gl~~~gflWi~dLt~pD~i~a~~~g~~~  251 (453)
                        + -...|+|+++++++||++| .....+++|.|+|+++|.+||.|+.  +++.++|++|++||+.+|           
T Consensus       151 ~~~~~~~~q~~~~~l~~~~~v~~-~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~g~~wf~dLt~~d-----------  218 (372)
T KOG1239|consen  151 DNNALLSWQEEQKLLVKKYGVKP-KQLALPVVQGPLFISFFMAIRVMAVPVPSFTTGGLLWFPDLTGPD-----------  218 (372)
T ss_pred             cccchHHHHHHHHhhhhhcCCCc-chhhhhhhcchhHHHHHHHHHHhhccccccchhhHHhcccccccC-----------
Confidence              1 3356778999999999999 9888888899999999999999985  477888999999999887           


Q ss_pred             cccccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHHhcCCCCC-CCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 012924          252 SWLLPFVDGHPPLGWHDTAAYLVLPVLLVVSQYASMELMKPPQT-DDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWF  330 (453)
Q Consensus       252 ~w~~p~v~g~~~lgw~d~~py~ILPIL~~~s~~ls~ki~~~~~~-~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWi  330 (453)
                                         |++++|+++.++++..+++...... .+.....|+.+++++|+.++.++.++|.|+++||+
T Consensus       219 -------------------p~~ilp~it~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~t~~~~~a~~~ywl  279 (372)
T KOG1239|consen  219 -------------------PLYILPGITLATLTLFIELGAETGLSSSKLLPAMKSFIRILPLLSLASTMQFPSAIFVYWL  279 (372)
T ss_pred             -------------------cchhhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHhhhhhhhhhhhhhhhHHhhhh
Confidence                               7889999999999888887543221 12334457788999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHH
Q 012924          331 TNNVLSTAQQVWLRK  345 (453)
Q Consensus       331 tSnl~siiQ~~~lrk  345 (453)
                          |+.+|..++|.
T Consensus       280 ----~s~~~~~vlr~  290 (372)
T KOG1239|consen  280 ----FSLVQGLVLRS  290 (372)
T ss_pred             ----hHHHHHHHhHH
Confidence                99999999665

>KOG1239 consensus Inner membrane protein translocase involved in respiratory chain assembly [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.04  E-value=2e-10  Score=119.25  Aligned_cols=239  Identities=23%  Similarity=0.238  Sum_probs=207.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHhhccccCCCcchHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhcCHH
Q 012924          100 NGGWFGFISEAMEFVLKILKDGIDAVHVPYSYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAGNQE  179 (453)
Q Consensus       100 ~~gwf~~i~~p~e~vL~~i~~~l~~lglp~swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~D~e  179 (453)
                      .+.|+.++....+..+..++......+.++.++.++...|+++.+...|+...+..+..-|...+|-...+...+.....
T Consensus         4 ~~~~~~~~~~~~~~~l~l~~~~~r~~s~~~~~~~~~~~~t~~~~~~~~p~~~~~~~s~~v~~~~~~~~~~~~~~~~~~~p   83 (372)
T KOG1239|consen    4 SNLWFFAISSLQEMRLFLLRPSCRSVSSPGFSGFSVFLRTILVKLTNSPLSQPEASSTSVVATVSPIIEGILLALSSWRP   83 (372)
T ss_pred             cccCchhhhhhhhHHHhhhcccccccccCCcccccccceeeccccccCCCCcCcccchHHHHhhchhHHHHHHHhcccCc
Confidence            57899999999998899898888888888889999999999999999999999999999999999999999888888655


Q ss_pred             --HHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHhhhhhccccCCcccccCCcCchhHhhhhcCCCccccccc
Q 012924          180 --RIQLETSRLYRQAGVNPLAGCLPTLATIPVWIGLYQALSNVANEGLLTEGFFWIPSLSGPTTIAARQSGSGISWLLPF  257 (453)
Q Consensus       180 --k~q~E~~kLYKk~gvnPl~GcLP~LiQiPIfiglf~~Lr~ma~~gl~~~gflWi~dLt~pD~i~a~~~g~~~~w~~p~  257 (453)
                        .+|.++.++|+-.|++.+++|++..+-++..+..|.+.+. .++...+.++.|++.+...-..++.+.+.++.|..++
T Consensus        84 ~~~lq~~l~~~h~~~g~pww~~i~~~t~~ir~~i~~~~~~~~-~~~akls~~~~~mp~~~~~l~~a~~~~~~~~~~q~~~  162 (372)
T KOG1239|consen   84 VATLQNELERLHVYSGLPWWASIVATTVLIRSLITPLLTNSQ-KNEAKLSKIFPEMPSLGEELGEAAQDNNALLSWQEEQ  162 (372)
T ss_pred             hhHHHHHHHHHHHHhCCcchHHHHHhHhhHhhhhhhHHHhhh-hHHHHHhhcCcccHHHHHHHHhhhccccchHHHHHHH
Confidence              8999999999999999999999999999999999999997 5556678899999999988777888888888999999


Q ss_pred             cCCCCCCCcc-hhHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHhHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhhHHH
Q 012924          258 VDGHPPLGWH-DTAAYLVLPVLLVVSQYASMELMKPPQTDDPAQKNTLLVFKFLPLMIGYFSLSVPSGLSIYWFTNNVLS  336 (453)
Q Consensus       258 v~g~~~lgw~-d~~py~ILPIL~~~s~~ls~ki~~~~~~~~p~qk~mk~m~~~mPlm~l~f~~~~PagL~LYWitSnl~s  336 (453)
                      ...+...||. +...+.+++..+.++.|+.++.|..+..+.+.+     ...++|-+..+.-...+.++..||+++++..
T Consensus       163 ~~l~~~~~v~~~~l~~~v~q~~l~~sff~air~ma~~v~~f~t~-----g~~wf~dLt~~dp~~ilp~it~~~~~~~~~~  237 (372)
T KOG1239|consen  163 KLLVKKYGVKPKQLALPVVQGPLFISFFMAIRVMAVPVPSFTTG-----GLLWFPDLTGPDPLYILPGITLATLTLFIEL  237 (372)
T ss_pred             HhhhhhcCCCcchhhhhhhcchhHHHHHHHHHHhhccccccchh-----hHHhcccccccCcchhhHHHHHHHHHHHHHH
Confidence            8888888998 888888888888899999998877444323222     4556777777888888999999999999999


Q ss_pred             HHHHHHHH
Q 012924          337 TAQQVWLR  344 (453)
Q Consensus       337 iiQ~~~lr  344 (453)
                      -.|+....
T Consensus       238 ~~~~~~~~  245 (372)
T KOG1239|consen  238 GAETGLSS  245 (372)
T ss_pred             HHHhhhhc
Confidence            99987655

>COG1422 Predicted membrane protein [Function unknown]

Probab=96.13  E-value=0.025  Score=54.45  Aligned_cols=90  Identities=16%  Similarity=0.155  Sum_probs=51.9

Q ss_pred             chHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhhcHHHHHHHHHhhc-----CH---HHHHHHHHHHHHHcCCCCCCCch
Q 012924          130 SYGFAIILLTVIVKVATFPLTKKQVESTLAMQNLQPKIKAIQQRYAG-----NQ---ERIQLETSRLYRQAGVNPLAGCL  201 (453)
Q Consensus       130 swglaIIllTliVRllllPL~ikq~kss~kMq~LqPel~~IqkKyk~-----D~---ek~q~E~~kLYKk~gvnPl~GcL  201 (453)
                      +.-++|+++.+++=+.+- +..+-..-..||+++|-+++|.|++++.     |.   +|+|+++++......==.--.+-
T Consensus        45 ~p~lvilV~avi~gl~~~-i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qmem~~~Q~elmk~qfk  123 (201)
T COG1422          45 PPHLVILVAAVITGLYIT-ILQKLLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQRELMKMQFK  123 (201)
T ss_pred             ccHHHHHHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            456677777777665432 3333445568999999999999998853     43   24444433332221100111345


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 012924          202 PTLATIPVWIGLYQALSNV  220 (453)
Q Consensus       202 P~LiQiPIfiglf~~Lr~m  220 (453)
                      ||+.++++.|-+|-=++..
T Consensus       124 PM~~~~v~tI~~F~Wl~~~  142 (201)
T COG1422         124 PMLYISVLTIPFFAWLRWF  142 (201)
T ss_pred             hHHHHHHHHHHHHHHHHHH
Confidence            7777777666666555544

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00