Citrus Sinensis ID: 012979

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450--
Protein Sequence
MEEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWVTDGI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEccccccccccccHHHHHHHHcccccEEEEcccccccccccccccccEEEEEEEEEcHHHHHHHHHHcccccEEEEEEEEccccccEEcccccEEEEEEEccccEEEEEcccccEEEEEcccccEEEEEcccccEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccHHHHHHccccccEEEEccccHHHHHHHccccHHHHHHHHHHHHHHHHHEEEcccccHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHccccccccEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEEEEcHHHcccccccHHHcccccccccHHHHHHHHHHHHHHHcccEEEcccHHHHHcccHHHHHHHHHccccEEEEEEEEEEcccccccccccEEEEEEEEEccHHHHHHHHHHcHHHHEEEEEEccccccccEEcccEEEEEEEccccccEEEEEccccEEEEEEEEcccEEEEEcccccEEEEEEEccccEEEcccccHHHcEEccccHHHHHHHHHcccccEEEEEEccccccccccccccHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHcccHHHHHHEEEEEHcccccHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHccccEEEEEcEEccccccEEEcccc
Coil and Loop (DISEMBL)
meehlpqpLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVqsrlpqqvtaaprvtpfKSILENLVRNsrhlesvsigvdkslvgisyddaedesddlyltDVEFVKNWLPWVCEELkflsisdcwfqscwrkSEVLAFISSCCKSLVELEVKNAWlsvdnlnqmpmlTKLTLEFIRLededldkvndcfpclqvlnlvgvggfrqpkihLLHLKSClwtvsnaplslaiyapnlvklelrcvkpkslvlqtpllhdFCLSLEVANEIRFQEFRNLMNLQLESSSLSslintfpfgKTIKKLKVEllkpgepigmknlnlgvlfdvfpnlssltlgprawsAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLissctvdhprvrwrwgmwkegtedtwvtdgi
Flexible Loop (DISEMBL)
MEEHLPQPLILEILSRLTDSADLARCRVVSKTlnslckevrsINLVCTLSRYVQsrlpqqvtaaprvtpfkSILENLvrnsrhlesvsigvdkslvgISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWlsvdnlnqmpMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITasnlissctvdhprvrwrwgmwkegtedtwvtdgi
Low Complexity Region (SEG)
MEEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNlmnlqlessslsslINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWVTDGI
Disordered region (IsUnstruct)
********LILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWV****
Disordered Region (DISOPRED)
***HLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSR**********VTPFKSILENLVRNSRHLESVSIGVDKSLVGISY*DAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWVTDGI
Disordered Region (DISEMBL)
MEEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWVTDGI
Disordered Region (DISPRO)
**EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQ**AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWVTDG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWVTDGI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	452	2.2.26 [Sep-21-2011]
Q9M0E1	446	F-box/LRR-repeat protein	yes	no	0.973	0.986	0.547	1e-132

>sp|Q9M0E1|FBL77_ARATH F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana GN=At4g29420 PE=2 SV=1

 Score =  473 bits (1216), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/451 (54%), Positives = 322/451 (71%), Gaps = 11/451 (2%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
           + LP  L ++ILSR+ DS  LARCRV SKTLNSL +EVR++NL+CT SRY++SR      
Sbjct: 2   DELPPELWIKILSRINDSESLARCRVASKTLNSLSREVRAVNLICTWSRYLKSR------ 55

Query: 63  AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDD-AEDESDDLYLTDVEFVKNW 121
           +   VTPFK+I  +L+ NS  + S+S+GVDK+L G+S+DD  E++S DLYLTDVEFVK W
Sbjct: 56  SIVVVTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEEDSKDLYLTDVEFVKEW 115

Query: 122 LPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLT 181
           LP V E+L+ LSISD W QSCWRKS++LA ISS C  LV+LEVKNAWLSV  L +MP L 
Sbjct: 116 LPRVREDLENLSISDFWIQSCWRKSDILALISSNCSKLVKLEVKNAWLSVVGLTEMPNLR 175

Query: 182 KLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLA 241
            LTLEFIRL+DE+L+KVNDCFP LQ LNL+GVGG ++P+IH LHLKSC WTVSNAPLSLA
Sbjct: 176 YLTLEFIRLDDENLEKVNDCFPFLQELNLIGVGGLKEPRIHFLHLKSCHWTVSNAPLSLA 235

Query: 242 IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL 301
           I APNL++L+L+C KPKSL+++TP L    LS+E A  + F EF++L  L+L S  +  L
Sbjct: 236 IVAPNLLELKLKCNKPKSLLVETPKLVQCHLSVEDAEGVSFGEFQDLKTLELVSPDMYRL 295

Query: 302 INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFD- 360
           I+   FG  IKKL V+ +K  E      L L  +   FP ++SL+L PR WS ++++F  
Sbjct: 296 ISNISFGNKIKKLAVDSVKSIEQSERLELGLATILKAFPGITSLSLSPRTWSDIETHFQS 355

Query: 361 KGRLEIRTEMKVLKEIIARLVVDD---ISVTRSFIFAIMNICSNLSDMALLIHREEDSIT 417
           +G L        LK+I AR+ + D   +  T SFI +I+N    L+DM L+IH+++D   
Sbjct: 356 QGGLGDMKGTDSLKQITARVQMSDHTNVHQTVSFIRSIVNKYRGLTDMRLMIHQDKDPRV 415

Query: 418 ASNLISSCTVDHPRVRWRWGMWKEGTEDTWV 448
            SNLIS+C + +PRVRW+WGMW EG ED WV
Sbjct: 416 RSNLISTCMMSNPRVRWKWGMWAEGGEDMWV 446

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
255578654	460	conserved hypothetical protein [Ricinus	0.988	0.971	0.593	1e-147
356527730	453	PREDICTED: F-box/LRR-repeat protein At4g	0.988	0.986	0.528	1e-134
297799050	445	F-box family protein [Arabidopsis lyrata	0.973	0.988	0.548	1e-132
15233569	446	F-box/LRR-repeat protein [Arabidopsis th	0.973	0.986	0.547	1e-130
26450298	446	unknown protein [Arabidopsis thaliana]	0.973	0.986	0.545	1e-130
449458712	449	PREDICTED: F-box/LRR-repeat protein At4g	0.980	0.986	0.502	1e-116
357520739	370	F-box/LRR-repeat protein [Medicago trunc	0.814	0.994	0.465	3e-88
414875876	445	TPA: hypothetical protein ZEAMMB73_24001	0.918	0.932	0.372	2e-66
357126244	448	PREDICTED: F-box/LRR-repeat protein At4g	0.926	0.935	0.350	4e-58
242051743	416	hypothetical protein SORBIDRAFT_03g00302	0.884	0.961	0.349	5e-58

>gi|255578654|ref|XP_002530188.1| conserved hypothetical protein [Ricinus communis] gi|223530307|gb|EEF32202.1| conserved hypothetical protein [Ricinus communis]

 Score =  528 bits (1359), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 272/458 (59%), Positives = 346/458 (75%), Gaps = 11/458 (2%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLC-KEVRSINLVCTLSRYVQSRLPQQV 61
           EHLP+P++LEIL+RLTDS +LARCR+VSKT N L   ++RSINL CTLSRY++SR P   
Sbjct: 2   EHLPEPILLEILTRLTDSTELARCRLVSKTFNKLIFSDIRSINLTCTLSRYLKSRSPN-- 59

Query: 62  TAAPRVTPFKSILENLVRNSRHL--ESVSIGVDKSLVGISYDDAEDE--SDDLYLTDVEF 117
               ++TPFK I   LV  S  L  +SV+IGV+KSL GI+YDD E++  SDDLYL++VEF
Sbjct: 60  -TKDQITPFKRIFNRLVNRSDSLVVDSVTIGVEKSLCGITYDDVEEDEWSDDLYLSEVEF 118

Query: 118 VKNWL--PWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLN 175
           VK WL  P VC ELKFLSISD W Q+CWR+S++LA +SSCC  L+ELEVKN+WLSVD L 
Sbjct: 119 VKEWLLLPRVCRELKFLSISDFWIQACWRRSQILALVSSCCHGLLELEVKNSWLSVDGLI 178

Query: 176 QMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSN 235
            MP+LT LTLE IRL+DE+L KVN CFPCL+VLNLVGVGG R+PKIHL HL++C WTVSN
Sbjct: 179 PMPVLTSLTLESIRLDDENLSKVNHCFPCLKVLNLVGVGGLREPKIHLYHLRTCRWTVSN 238

Query: 236 APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLES 295
           AP SL+I+APNL+KLEL C++P+SL+L+TPLL DF LS+  AN+ + ++  +L  LQLES
Sbjct: 239 APNSLSIFAPNLLKLELNCIEPRSLILETPLLSDFYLSIRKANKFKVKQLHDLKILQLES 298

Query: 296 SSLSSLINTFPFGKTIKKLKVELLKPG-EPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSA 354
           + + SLI  FP   ++++L V+  K   +   M  LNL +LFDVF N+SSLTL   AWS 
Sbjct: 299 TDILSLIRLFPSNSSVERLTVDSPKYAIQTDEMIRLNLEMLFDVFMNVSSLTLLSAAWSD 358

Query: 355 VQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREED 414
           ++  F    L    EMK LKE+I +LV+ DI VT SFIF I++ C+NLSD+ LLIH E D
Sbjct: 359 MEKCFLTNGLRHDMEMKELKEVIVQLVIQDIDVTLSFIFTILDKCTNLSDVGLLIHCEVD 418

Query: 415 SITASNLISSCTVDHPRVRWRWGMWKEGTEDTWVTDGI 452
              AS+L+S C  DHPR+RWRWGMWKEG++ TW++DGI
Sbjct: 419 PNVASSLLSRCKADHPRIRWRWGMWKEGSKGTWISDGI 456

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527730|ref|XP_003532461.1| PREDICTED: F-box/LRR-repeat protein At4g29420-like [Glycine max]

 Score =  484 bits (1245), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 239/452 (52%), Positives = 329/452 (72%), Gaps = 5/452 (1%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
           E LP  ++ EILSR TD+ D+ARCRVVSK+LN+   EVR +NLVC++SRY++SR P+   
Sbjct: 5   EDLPASVLAEILSRFTDTTDVARCRVVSKSLNAASYEVRWLNLVCSMSRYLKSRSPE--- 61

Query: 63  AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWL 122
               VTPFK+++ NLVR S +LESVS+GVD++L G+S+DD EDE+DDLYLTD+ F++ WL
Sbjct: 62  TKHLVTPFKTVITNLVRRSGNLESVSLGVDRALGGVSFDDVEDEADDLYLTDMNFIREWL 121

Query: 123 PWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTK 182
           P V + LK  S+SD W QSCWR+SE L+ ISS C++LV+L V+NAWLSVD L  MP LT 
Sbjct: 122 PSVSDALKSFSVSDFWVQSCWRRSEALSLISSTCRNLVKLVVRNAWLSVDGLCLMPTLTY 181

Query: 183 LTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAI 242
           LTLEF+RL+DEDL ++N CFP L  LNL+GVGG ++PKI+LLHL +C W+VSNAPLSL I
Sbjct: 182 LTLEFVRLDDEDLSRINACFPNLTQLNLIGVGGLKEPKINLLHLTTCQWSVSNAPLSLII 241

Query: 243 YAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQL--ESSSLSS 300
            AP LV  +LRC+KP+ +VL+ P L +F LSLE  +E+R +   N+  LQL  E  SL  
Sbjct: 242 CAPCLVDFDLRCIKPRLVVLEAPSLSNFSLSLENTDELRLKNCANIQCLQLSVECLSLGF 301

Query: 301 LINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFD 360
           L + F    T+K+L ++L+   E + +    +  L   FPN++ L LGPRAW  ++++F 
Sbjct: 302 LFSMFRHCSTVKRLTLDLVGRTEQVDVAEFGIDTLLVCFPNITYLNLGPRAWRVMENSFS 361

Query: 361 KGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASN 420
           +G LE    MK++KE+IA L+V ++ VT +FI ++++  + LSD++LLI+R  DS  A +
Sbjct: 362 RGGLEDGIGMKMIKELIAHLMVHEMGVTLAFISSVLDKSTELSDVSLLINRNVDSYVAGS 421

Query: 421 LISSCTVDHPRVRWRWGMWKEGTEDTWVTDGI 452
           LIS+C    PRVRWRWG+W+EG +DTW +DGI
Sbjct: 422 LISACRSKFPRVRWRWGIWEEGIKDTWFSDGI 453

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799050|ref|XP_002867409.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297313245|gb|EFH43668.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 247/450 (54%), Positives = 323/450 (71%), Gaps = 10/450 (2%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
           + LP  L+++ILSRL DS  LARCRV SKTLNSL +EVR++NL+CTLSR+++SR      
Sbjct: 2   DELPPELLVKILSRLNDSESLARCRVASKTLNSLSREVRAVNLICTLSRFLKSR------ 55

Query: 63  AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDD-AEDESDDLYLTDVEFVKNW 121
           +   VTPFK+I  +L+ NS ++ S+SIGVDK+L+G+S+DD  E++S DLYLTDVEF K W
Sbjct: 56  SIVVVTPFKTIFRSLIENSCNIRSISIGVDKALIGMSFDDLNEEDSKDLYLTDVEFAKEW 115

Query: 122 LPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLT 181
           LP V E+L+ LSISD W QSCWRKS++LA ISS C  LV+LEVKN+WLSV  L +M  L 
Sbjct: 116 LPRVREDLEMLSISDFWIQSCWRKSDILALISSNCSKLVKLEVKNSWLSVVGLREMSNLR 175

Query: 182 KLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLA 241
            LTLEFIRL+DE+L+KVNDCFP LQVLNL+GVGG ++P+IH LHLKSC WTVSNAPLSLA
Sbjct: 176 HLTLEFIRLDDENLEKVNDCFPFLQVLNLIGVGGLKEPRIHFLHLKSCHWTVSNAPLSLA 235

Query: 242 IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL 301
           I APNL++L+L+C KPKSL+L+TP L  F  S+E A  + F EFR+L +L+L S  +  L
Sbjct: 236 IVAPNLLELKLKCNKPKSLILETPKLVKFHFSVEDAEGVGFGEFRDLNSLELISPDMYRL 295

Query: 302 INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDK 361
           I+   +G  I+KL V+ +K  E      L LG L   FP +SSL+L PR WS ++++F  
Sbjct: 296 ISNIRYGNKIRKLAVDSVKSIEQSERLELGLGTLLKAFPGISSLSLSPRTWSDIETHFQS 355

Query: 362 GRLEIRTEMKVLKEIIARLVVDD---ISVTRSFIFAIMNICSNLSDMALLIHREEDSITA 418
             L        LK+I AR+ + D   +  T SFI +I+N    L+DM L+IH+++D    
Sbjct: 356 QGLGNMKGTASLKQITARVQMSDHTNVHQTVSFIRSILNKYRGLTDMRLMIHQDKDPRVR 415

Query: 419 SNLISSCTVDHPRVRWRWGMWKEGTEDTWV 448
           SNLIS+C + +P V W+WGMW EG ED WV
Sbjct: 416 SNLISACIMSNPGVSWKWGMWAEGGEDMWV 445

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233569|ref|NP_194671.1| F-box/LRR-repeat protein [Arabidopsis thaliana] gi|75264516|sp|Q9M0E1.1|FBL77_ARATH RecName: Full=F-box/LRR-repeat protein At4g29420 gi|7269841|emb|CAB79700.1| hypothetical protein [Arabidopsis thaliana] gi|109946621|gb|ABG48489.1| At4g29420 [Arabidopsis thaliana] gi|332660229|gb|AEE85629.1| F-box/LRR-repeat protein [Arabidopsis thaliana]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 247/451 (54%), Positives = 322/451 (71%), Gaps = 11/451 (2%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
           + LP  L ++ILSR+ DS  LARCRV SKTLNSL +EVR++NL+CT SRY++SR      
Sbjct: 2   DELPPELWIKILSRINDSESLARCRVASKTLNSLSREVRAVNLICTWSRYLKSR------ 55

Query: 63  AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDD-AEDESDDLYLTDVEFVKNW 121
           +   VTPFK+I  +L+ NS  + S+S+GVDK+L G+S+DD  E++S DLYLTDVEFVK W
Sbjct: 56  SIVVVTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEEDSKDLYLTDVEFVKEW 115

Query: 122 LPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLT 181
           LP V E+L+ LSISD W QSCWRKS++LA ISS C  LV+LEVKNAWLSV  L +MP L 
Sbjct: 116 LPRVREDLENLSISDFWIQSCWRKSDILALISSNCSKLVKLEVKNAWLSVVGLTEMPNLR 175

Query: 182 KLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLA 241
            LTLEFIRL+DE+L+KVNDCFP LQ LNL+GVGG ++P+IH LHLKSC WTVSNAPLSLA
Sbjct: 176 YLTLEFIRLDDENLEKVNDCFPFLQELNLIGVGGLKEPRIHFLHLKSCHWTVSNAPLSLA 235

Query: 242 IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL 301
           I APNL++L+L+C KPKSL+++TP L    LS+E A  + F EF++L  L+L S  +  L
Sbjct: 236 IVAPNLLELKLKCNKPKSLLVETPKLVQCHLSVEDAEGVSFGEFQDLKTLELVSPDMYRL 295

Query: 302 INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFD- 360
           I+   FG  IKKL V+ +K  E      L L  +   FP ++SL+L PR WS ++++F  
Sbjct: 296 ISNISFGNKIKKLAVDSVKSIEQSERLELGLATILKAFPGITSLSLSPRTWSDIETHFQS 355

Query: 361 KGRLEIRTEMKVLKEIIARLVVDD---ISVTRSFIFAIMNICSNLSDMALLIHREEDSIT 417
           +G L        LK+I AR+ + D   +  T SFI +I+N    L+DM L+IH+++D   
Sbjct: 356 QGGLGDMKGTDSLKQITARVQMSDHTNVHQTVSFIRSIVNKYRGLTDMRLMIHQDKDPRV 415

Query: 418 ASNLISSCTVDHPRVRWRWGMWKEGTEDTWV 448
            SNLIS+C + +PRVRW+WGMW EG ED WV
Sbjct: 416 RSNLISTCMMSNPRVRWKWGMWAEGGEDMWV 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|26450298|dbj|BAC42265.1| unknown protein [Arabidopsis thaliana]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/451 (54%), Positives = 321/451 (71%), Gaps = 11/451 (2%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
           + LP  L ++ILSR+ DS  LARCRV SKTLNSL +EVR++NL+CT SRY++SR      
Sbjct: 2   DELPPELWIKILSRINDSESLARCRVASKTLNSLSREVRAVNLICTWSRYLKSR------ 55

Query: 63  AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDD-AEDESDDLYLTDVEFVKNW 121
           +   VTPFK+I  +L+ NS  + S+S+GVDK+L G+S+DD  E++S DLYLTDVEFVK W
Sbjct: 56  SIVVVTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEEDSKDLYLTDVEFVKEW 115

Query: 122 LPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLT 181
           LP V E+L+ LSISD W QSCWRKS++LA ISS C  LV+LEVKNAWLSV  L +MP L 
Sbjct: 116 LPRVREDLENLSISDFWIQSCWRKSDILALISSNCSKLVKLEVKNAWLSVVGLTEMPNLR 175

Query: 182 KLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLA 241
            LTLEFIRL+DE+L+KVNDCFP LQ LNL+GVGG ++P+IH LHLKSC WTVSNAPLSLA
Sbjct: 176 YLTLEFIRLDDENLEKVNDCFPFLQELNLIGVGGLKEPRIHFLHLKSCHWTVSNAPLSLA 235

Query: 242 IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL 301
           I APNL++L+L+C KPKSL+++TP L    LS+E A  + F EF++L  L+L S  +  L
Sbjct: 236 IVAPNLLELKLKCNKPKSLLVETPKLVQCHLSVEDAEGVSFGEFQDLKTLELVSPDMYRL 295

Query: 302 INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFD- 360
           I+   FG  IKKL V+ +K         L L  +   FP ++SL+L PR WS ++++F  
Sbjct: 296 ISNISFGNKIKKLAVDSVKSIGQSERLELGLATILKAFPGITSLSLSPRTWSDIETHFQS 355

Query: 361 KGRLEIRTEMKVLKEIIARLVVDD---ISVTRSFIFAIMNICSNLSDMALLIHREEDSIT 417
           +G L        LK+I AR+ + D   +  T SFI +I+N    L+DM L+IH+++D   
Sbjct: 356 QGGLGDMKGTDSLKQITARVQMSDHTNVHQTVSFIRSIVNKYRGLTDMRLMIHQDKDPRV 415

Query: 418 ASNLISSCTVDHPRVRWRWGMWKEGTEDTWV 448
            SNLIS+C + +PRVRW+WGMW EG ED WV
Sbjct: 416 RSNLISTCMMSNPRVRWKWGMWAEGGEDMWV 446

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458712|ref|XP_004147091.1| PREDICTED: F-box/LRR-repeat protein At4g29420-like [Cucumis sativus] gi|449503313|ref|XP_004161940.1| PREDICTED: F-box/LRR-repeat protein At4g29420-like [Cucumis sativus]

 Score =  426 bits (1094), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 225/448 (50%), Positives = 304/448 (67%), Gaps = 5/448 (1%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
           + LP  L+LEIL+RL DSADLARCRV SK++N L ++VRS+NL C+L RY++SR  +   
Sbjct: 2   DDLPPSLVLEILNRLADSADLARCRVASKSINVLSRDVRSVNLFCSLDRYLKSRAAETKL 61

Query: 63  AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISY--DDAEDESDDLYLTDVEFVKN 120
               VTPFK IL+ LV     L+SVSIGV+KSL  ISY  DD ED SDDL+LTDV + K 
Sbjct: 62  L---VTPFKVILKTLVNEFLALDSVSIGVEKSLGRISYEHDDVEDWSDDLFLTDVGYAKE 118

Query: 121 WLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPML 180
           WLP + + L  LSI D W QSCWR+S++LA I+  C +L+ELE+KNAWLSVD L++M  L
Sbjct: 119 WLPSIGKNLTSLSIVDFWVQSCWRQSKILALITLYCCNLLELELKNAWLSVDGLHRMNSL 178

Query: 181 TKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSL 240
             LTLEFIRL+DEDL ++N+ FP L+VLNL+GVGG  +PKI LLHLK+C WTVSNAP+SL
Sbjct: 179 KYLTLEFIRLDDEDLSELNNNFPHLEVLNLIGVGGLNEPKIRLLHLKTCKWTVSNAPVSL 238

Query: 241 AIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSS 300
            IYAP+L KLEL+CVKPK L+++TP+L DF   LE A+ ++  EF  L  L L    L S
Sbjct: 239 CIYAPSLSKLELKCVKPKFLIIETPMLSDFHFCLEDASGLQVDEFPCLRKLHLHFPRLHS 298

Query: 301 LINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFD 360
           LI TF   +T+K+L ++ ++  E I      L  +F++FPNLS L LGP      ++ + 
Sbjct: 299 LITTFSSARTLKELTLDTMQRAESIESVKFCLDTVFEIFPNLSFLKLGPGVLLEAETFYQ 358

Query: 361 KGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASN 420
              LE R  M+ LK+ ++ L  + I +   FI +I+  C++  DM LL+++  DS     
Sbjct: 359 AEGLEGRMGMRDLKKNLSNLKTNKIELKLPFIISILEKCTDSFDMTLLLYQNADSDITGG 418

Query: 421 LISSCTVDHPRVRWRWGMWKEGTEDTWV 448
           ++S   ++H R RWRW +WKEG+ + W 
Sbjct: 419 IMSKRAINHRRPRWRWELWKEGSREAWA 446

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520739|ref|XP_003630658.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355524680|gb|AET05134.1| F-box/LRR-repeat protein [Medicago truncatula]

 Score =  332 bits (850), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/406 (46%), Positives = 255/406 (62%), Gaps = 38/406 (9%)

Query: 49  LSRYVQSRLPQQVTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESD 108
           +SRY+ SR P+       +TPFK +  NLV  S +LESV+IGVD+SLV + +DD EDESD
Sbjct: 1   MSRYLNSRSPE---TKHLITPFKIVFNNLVLRSPNLESVTIGVDRSLVEMPFDDFEDESD 57

Query: 109 DLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAW 168
           DL+LTD  F+++WLP +   +   S+SD W QSCWR+S  L  ISS C  LV+L ++NAW
Sbjct: 58  DLHLTDFNFIQDWLPSLSNSINSPSVSDFWVQSCWRRSRALPLISSTCYGLVQLVIRNAW 117

Query: 169 LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKS 228
           L+VD L  MP LT LTLEF+RL+DEDL+ +N CFP L+ LNL+GVGG  +PKI+L HL++
Sbjct: 118 LAVDGLCLMPTLTNLTLEFVRLDDEDLNMINTCFPNLKELNLIGVGGLEEPKINLSHLQT 177

Query: 229 CLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNL 288
           C W+VSNAPLSL I AP+LV   L+CVKP+ L L+ P L +F LSLE  +E+  +   N+
Sbjct: 178 CQWSVSNAPLSLVISAPSLVDFHLKCVKPRLLFLEAPSLSNFNLSLENTDELMLKNCGNI 237

Query: 289 MNLQLESS--SLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLT 346
             LQLE    SL+ +++ F     + +L  E                             
Sbjct: 238 QCLQLEVECFSLAYILSMFRHCVVLDRLSSE----------------------------- 268

Query: 347 LGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMA 406
               AW  ++S+F K   E  T MK LKE++A +VV +I  T +FIF++++ C+ L D++
Sbjct: 269 ----AWHVMESSFRKVSCENGTRMKTLKELVAHIVVVEIEFTHAFIFSVLDKCNLLGDVS 324

Query: 407 LLIHREEDSITASNLISSCTVDHPRVRWRWGMWKEGTEDTWVTDGI 452
           L IH   DS  A NLIS C      VRWRWG+WKEG +DT V+DGI
Sbjct: 325 LFIHGHADSCVAGNLISVCRSKFTGVRWRWGIWKEGIKDTLVSDGI 370

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414875876|tpg|DAA53007.1| TPA: hypothetical protein ZEAMMB73_240015 [Zea mays]

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/456 (37%), Positives = 256/456 (56%), Gaps = 41/456 (8%)

Query: 5   LPQPLILEILSRLTDSADLARCRVVSKTL---NSLCKEVRSINLVCTLSRYVQSRLPQQV 61
           LP  ++ ++L R+ D+ D+A CR+ S+TL   + +C  VR    +C   R  + R     
Sbjct: 11  LPAAVLADVLGRVADAGDIAACRLASRTLLAASYICPRVR----LCAADRARRRREGGGG 66

Query: 62  TAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAE-------DESDDLYLTD 114
           + A R T   + L +L+    HL S+S+  D +    S DDA        DE+D L+LT 
Sbjct: 67  SPAFRAT--TANLASLL--GPHLRSLSL--DTAGGQGSPDDAMWVEEGEFDEADGLHLTC 120

Query: 115 VEFVKNWLPWVCEE-LKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDN 173
            E V  W        L+ L I+D W Q+CWRK+E L  IS  C++LV+L +KNAWLSVD 
Sbjct: 121 GEAVAAWATTSAGTVLRELDIADYWPQACWRKAEALPLISHYCQNLVKLCLKNAWLSVDR 180

Query: 174 LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV 233
           L +MP LT LTLEFIRL+DEDL+++N+CFPCL  LNL+GVGG + PKIHLL LK+C W V
Sbjct: 181 LKKMPNLTYLTLEFIRLDDEDLNQLNECFPCLHTLNLIGVGGLKDPKIHLLQLKACCWEV 240

Query: 234 SNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLE-VANEIRFQEFRNLMNLQ 292
           SN P SL ++AP+LV LEL+C++P +L+L TP L    L+++ +    R      L NL+
Sbjct: 241 SNVPRSLVVHAPDLVFLELKCIRPDTLILDTPSLSTLKLTIDKLGATARVDGLLRLSNLR 300

Query: 293 LESSSLSSLINTFPFGKTIKKLKVELLKPGEPIG-MKNLNLGVLFDVFPNLSSLTLGPRA 351
           +ES   SSL   F   + I+ L++EL +       ++ +N   L     + S + LGPR 
Sbjct: 301 IESLDFSSLFPAFMDNQAIRTLELELPESSSQYELLEAVNPDYLLRRLASFSEVKLGPR- 359

Query: 352 WSAVQSNFDKGRLEIRTEMKVLKEI-----IARLVVDDISVTRSF-IFAIMNICSNLSDM 405
                  F +   E++  +   K+I     + +L++        F +  +  IC+ L ++
Sbjct: 360 -------FSR---ELKLCLAQYKDIQFGSCLKKLLIHVPQSGSCFHLMPLFEICAPLCEV 409

Query: 406 ALLIHREE-DSITASNLISSCTVDHPRVRWRWGMWK 440
            +L H E  D++   + +S C  + P +RW+WG W+
Sbjct: 410 TVLFHAESADAVRRQDAMSICMQNFPEIRWQWGTWQ 445

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357126244|ref|XP_003564798.1| PREDICTED: F-box/LRR-repeat protein At4g29420-like [Brachypodium distachyon]

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 160/456 (35%), Positives = 235/456 (51%), Gaps = 37/456 (8%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLS----RYVQSRLP 58
           + LP  ++ E+L  + D+ D+A CR+ S+ L +       + L    S    R ++ R  
Sbjct: 10  DSLPAAILAEVLGLIADAGDIAACRLASRALLAASYHCPRVRLHAASSARRLRGLKGRDW 69

Query: 59  QQVTAAPRVTP--FKSILENLVRNSRHLESVSIGVDKSLVGISYDDAE-------DESDD 109
                A RV      S+L   +R        S+ +D S      D+A        DE+DD
Sbjct: 70  DGALLAFRVAAGNVASLLGPHLR--------SLALDASEGQGCPDEAARVEEGEFDEADD 121

Query: 110 LYLTDVEFVKNWLPWVC-EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAW 168
           LYLT  E V  W        L+ + I+D W QSCWRK+E L  IS  C +L +L ++NAW
Sbjct: 122 LYLTGGESVAAWAGTAAGPSLREVDIADFWPQSCWRKAEALPVISHFCHNLSKLGLRNAW 181

Query: 169 LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKS 228
           L VD L  MP LT L LEFIRL+DEDL K+N+CFPCLQ+L L+ VGG + PKIH   LK+
Sbjct: 182 LCVDGLKIMPNLTHLALEFIRLDDEDLSKLNECFPCLQILKLIKVGGLKDPKIHFPQLKT 241

Query: 229 CLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLE-VANEIRFQEFRN 287
           C W VSN P SLAI+AP LV LEL+CV+P+ L+L TP +    L+++ +   +      +
Sbjct: 242 CCWEVSNVPRSLAIHAPALVYLELKCVRPEILILDTPSMSSLKLTIDKLGPTVIVGGLVS 301

Query: 288 LMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFD--VFPNLSSL 345
           L NL++ESS L+SL+  F  G+ I+ L +EL     P       L    D  +F   + +
Sbjct: 302 LTNLRIESSDLNSLLRVFTDGRDIRTLDLEL-----PASANRYELYEAVDPELFSRTTEV 356

Query: 346 TLGPRAWSAVQSN--FDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLS 403
            L PR    +  +  F     + R+    LK+++  L   +I+ T  F+  ++N C+   
Sbjct: 357 KLSPRFSYELMRHIVFCMTTHDCRS---CLKKLLVHLPQSNIT-TCPFV-PLLNNCAPSC 411

Query: 404 DMALLIHREEDSITASNLISSCTVDHPRVRWRWGMW 439
           ++ +L H            S   +  P + W+WG W
Sbjct: 412 EVTVLFHAATSDAVRQAASSVWPMGFPDISWQWGTW 447

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051743|ref|XP_002455017.1| hypothetical protein SORBIDRAFT_03g003020 [Sorghum bicolor] gi|241926992|gb|EES00137.1| hypothetical protein SORBIDRAFT_03g003020 [Sorghum bicolor]

 Score =  231 bits (590), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 156/446 (34%), Positives = 232/446 (52%), Gaps = 46/446 (10%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTL---NSLCKEVRSINLVCTLSRYVQSRLPQ 59
           + LP  ++ ++L R+ D+ D+A CR+ S+ L   + LC  VR     C   R       +
Sbjct: 9   DALPAAVLADVLGRVADAGDIAACRLASRALLAASYLCPRVRLCAADCARRRC------E 62

Query: 60  QVTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVK 119
                P      + L +L+    HL S                       L+LT  E V 
Sbjct: 63  GGGGFPAFCATTANLASLL--GPHLRS-----------------------LHLTSGEAVA 97

Query: 120 NWLPWVCEE-LKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMP 178
            W        L+ L I+D W Q+CWRK+E L  IS  C++LV+L +KNAWLSV+ L +MP
Sbjct: 98  AWAATSTAAVLRELEIADYWPQACWRKAEALPLISHYCQNLVKLGLKNAWLSVEGLKKMP 157

Query: 179 MLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPL 238
            LT LTLEFIRL+DEDL+++N+CFPCL  LNL+GVGG + PKI LLHLK+C W VSN P 
Sbjct: 158 NLTHLTLEFIRLDDEDLNQLNECFPCLHTLNLIGVGGLKDPKIDLLHLKACRWEVSNVPR 217

Query: 239 SLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLE-VANEIRFQEFRNLMNLQLESSS 297
           SL + AP+LV LEL+C++P +L+L TP L    L+++ +   +R      L NL +ES  
Sbjct: 218 SLVVRAPDLVFLELKCIRPDTLILDTPSLSTLKLTIDKLGANVRVDGLLRLTNLHIESLD 277

Query: 298 LSSLINTFPFGKTIKKLKVELLKPGEPIG-MKNLNLGVLFDVFPNLSSLTLGPRAWSAVQ 356
            SSL   F   + I+ L++EL +       ++ +N   L  +  ++S + L PR    ++
Sbjct: 278 FSSLFLVFIDNRGIRTLELELPEFASQYELLEAVNPDYLLKMLASISEVKLAPRFSCELK 337

Query: 357 SNFD--KGRLEIRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREED 414
                 KG  +  + +K L      L+      + S +  +  IC+ L ++ +L H E  
Sbjct: 338 LCLALCKGS-QFGSCLKKL------LIHVPQPGSCSHLLPLFEICAPLCEVTVLFHTESA 390

Query: 415 SITASNLISSCTVDHPRVRWRWGMWK 440
                  IS C  + P +RW+WG W+
Sbjct: 391 DAVRQGAISICMQNFPDIRWQWGTWQ 416

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	452
TAIR|locus:2118304	446	AT4G29420 "AT4G29420" [Arabido	0.975	0.988	0.538	4.6e-121

TAIR|locus:2118304 AT4G29420 "AT4G29420" [Arabidopsis thaliana (taxid:3702)]

 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 244/453 (53%), Positives = 317/453 (69%)

Query:     1 MEEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQ 60
             M+E LP  L ++ILSR+ DS  LARCRV SKTLNSL +EVR++NL+CT SRY++SR    
Sbjct:     1 MDE-LPPELWIKILSRINDSESLARCRVASKTLNSLSREVRAVNLICTWSRYLKSR---S 56

Query:    61 VTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDA-EDESDDLYLTDVEFVK 119
             +     VTPFK+I  +L+ NS  + S+S+GVDK+L G+S+DD  E++S DLYLTDVEFVK
Sbjct:    57 IVV---VTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEEDSKDLYLTDVEFVK 113

Query:   120 NWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPM 179
              WLP V E+L+ LSISD W QSCWRKS++LA ISS C  LV+LEVKNAWLSV  L +MP 
Sbjct:   114 EWLPRVREDLENLSISDFWIQSCWRKSDILALISSNCSKLVKLEVKNAWLSVVGLTEMPN 173

Query:   180 LTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLS 239
             L  LTLEFIRL+DE+L+KVNDCFP LQ LNL+GVGG ++P+IH LHLKSC WTVSNAPLS
Sbjct:   174 LRYLTLEFIRLDDENLEKVNDCFPFLQELNLIGVGGLKEPRIHFLHLKSCHWTVSNAPLS 233

Query:   240 LAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNXXXXXXXXXXXX 299
             LAI APNL++L+L+C KPKSL+++TP L    LS+E A  + F EF++            
Sbjct:   234 LAIVAPNLLELKLKCNKPKSLLVETPKLVQCHLSVEDAEGVSFGEFQDLKTLELVSPDMY 293

Query:   300 XXINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNF 359
               I+   FG  IKKL V+ +K  E      L L  +   FP ++SL+L PR WS ++++F
Sbjct:   294 RLISNISFGNKIKKLAVDSVKSIEQSERLELGLATILKAFPGITSLSLSPRTWSDIETHF 353

Query:   360 D-KGRLEIRTEMKVLKEIIARLVVDD---ISVTRSFIFAIMNICSNLSDMALLIHREEDS 415
               +G L        LK+I AR+ + D   +  T SFI +I+N    L+DM L+IH+++D 
Sbjct:   354 QSQGGLGDMKGTDSLKQITARVQMSDHTNVHQTVSFIRSIVNKYRGLTDMRLMIHQDKDP 413

Query:   416 ITASNLISSCTVDHPRVRWRWGMWKEGTEDTWV 448
                SNLIS+C + +PRVRW+WGMW EG ED WV
Sbjct:   414 RVRSNLISTCMMSNPRVRWKWGMWAEGGEDMWV 446


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.137   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      452       438   0.00088  118 3  11 22  0.50    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  624 (66 KB)
  Total size of DFA:  288 KB (2149 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  37.50u 0.13s 37.63t   Elapsed:  00:00:02
  Total cpu time:  37.50u 0.13s 37.63t   Elapsed:  00:00:02
  Start:  Mon May 20 15:32:54 2013   End:  Mon May 20 15:32:56 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006914 "autophagy" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M0E1	FBL77_ARATH	No assigned EC number	0.5476	0.9734	0.9865	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	452
pfam12937	47	pfam12937, F-box-like, F-box-like	0.001

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 3  EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLC 37
            LP  ++L+I S L D  DL R  +V +    L 
Sbjct: 2  SDLPDEILLQIFSYL-DPRDLLRLALVCRRWRELA 35

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	452
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.18
KOG4341	483	consensus F-box protein containing LRR [General fu	98.99
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.26
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	97.96
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.93
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	97.78
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.72
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	97.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	97.68
smart00579	72	FBD domain in FBox and BRCT domain containing plan	97.67
PLN03210	1153	Resistant to P. syringae 6; Provisional	97.19
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	97.09
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	96.71
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	96.7
PLN03210	1153	Resistant to P. syringae 6; Provisional	96.68
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.37
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	96.21
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	96.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.78
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	95.55
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	95.22
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	95.13
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	95.01
KOG0617	264	consensus Ras suppressor protein (contains leucine	94.38
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.32
KOG4341	483	consensus F-box protein containing LRR [General fu	92.79
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.71
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	92.62
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	92.52
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	92.23
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	91.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	91.9
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	91.45
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	91.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	91.22
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.18
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	90.89
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	90.85
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.56
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	89.45
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	89.14
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	88.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	88.45
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	87.06
KOG2997	366	consensus F-box protein FBX9 [General function pre	85.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	84.47
PLN03150	623	hypothetical protein; Provisional	82.18

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1.9e-12  Score=124.92  Aligned_cols=265  Identities=18%  Similarity=0.205  Sum_probs=154.6

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc---CcceeeeecchhhhhccCCccccCCCCCCcH-HHHHHHH
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE---VRSINLVCTLSRYVQSRLPQQVTAAPRVTPF-KSILENL   77 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~---~~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~   77 (452)
                      +++|||||+..|+|-|+ .||.-+.+.|||||+++..+   |..+++..                    ++. .++..++
T Consensus        98 ~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~--------------------r~i~p~~l~~l  156 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTG--------------------RNIHPDVLGRL  156 (419)
T ss_pred             cccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhccccccceeeeccCC--------------------CccChhHHHHH
Confidence            47899999999999997 99999999999999999754   33333321                    111 1356666


Q ss_pred             HhcCC-CceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceecccC
Q 012979           78 VRNSR-HLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCC  156 (452)
Q Consensus        78 l~~~~-~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c  156 (452)
                      ++|.- .+|.-+          .+      |     .+|++. .-.......||+|+|++..-     ....+-.++..|
T Consensus       157 ~~rgV~v~Rlar----------~~------~-----~~prla-e~~~~frsRlq~lDLS~s~i-----t~stl~~iLs~C  209 (419)
T KOG2120|consen  157 LSRGVIVFRLAR----------SF------M-----DQPRLA-EHFSPFRSRLQHLDLSNSVI-----TVSTLHGILSQC  209 (419)
T ss_pred             HhCCeEEEEcch----------hh------h-----cCchhh-hhhhhhhhhhHHhhcchhhe-----eHHHHHHHHHHH
Confidence            66642 222211          11      1     122222 22222345689999975321     112344555679


Q ss_pred             CCCcEEEeeceeecCC---CCCCCCCCceeeeeeE-eecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979          157 KSLVELEVKNAWLSVD---NLNQMPMLTKLTLEFI-RLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT  232 (452)
Q Consensus       157 ~~L~~L~L~~~~~d~~---~l~~fp~Lr~L~L~~v-~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~  232 (452)
                      ..|+.|.|+|.-+|.+   .++.=.+|+.|+|..+ .++..+++-+++.|..|+.|+|.+|+-... .            
T Consensus       210 ~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~-~------------  276 (419)
T KOG2120|consen  210 SKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTE-K------------  276 (419)
T ss_pred             HhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccch-h------------
Confidence            9999999999555432   3566688999999765 567889999999999999999988753321 0            


Q ss_pred             ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccc--cccccccccCCc
Q 012979          233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSL--SSLINTFPFGKT  310 (452)
Q Consensus       233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~l~~~~p~  310 (452)
                         +.-.+.-..|+|.+|.+.++..           .++.  .+.. .....|++|-+|+++.+..  ...+..+-..+.
T Consensus       277 ---Vtv~V~hise~l~~LNlsG~rr-----------nl~~--sh~~-tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  277 ---VTVAVAHISETLTQLNLSGYRR-----------NLQK--SHLS-TLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             ---hhHHHhhhchhhhhhhhhhhHh-----------hhhh--hHHH-HHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence               0011222346777777754421           1110  0000 1234567777777764211  122333344566


Q ss_pred             eeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          311 IKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       311 lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +++|.+ ..|....-.++     --+++-|.|..|++.+-
T Consensus       340 L~~lSl-sRCY~i~p~~~-----~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  340 LQHLSL-SRCYDIIPETL-----LELNSKPSLVYLDVFGC  373 (419)
T ss_pred             heeeeh-hhhcCCChHHe-----eeeccCcceEEEEeccc
Confidence            666664 22321111111     23556677777777654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.99  E-value=5.9e-11  Score=119.27  Aligned_cols=346  Identities=18%  Similarity=0.186  Sum_probs=175.9

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhccCc-ceeeeecchhhhhccCCccccCCCCCCcHHHHHHHHHhc
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVR-SINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRN   80 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~~~-sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   80 (452)
                      +-.||.|++.+|+|+| |+|...+++++|+-|.-+..+.- .-++.+..+...   .+            ..+|.+++.|
T Consensus        72 ~~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rD---v~------------g~VV~~~~~R  135 (483)
T KOG4341|consen   72 SRSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRD---VD------------GGVVENMISR  135 (483)
T ss_pred             cccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehhcchhc---CC------------CcceehHhhh
Confidence            3479999999999999 79999999999999999876531 122221111000   00            1257778877


Q ss_pred             C-CCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceecccCCCC
Q 012979           81 S-RHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSL  159 (452)
Q Consensus        81 ~-~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L  159 (452)
                      + +.++++++.-+..+.                                                 ...+.....+|++.
T Consensus       136 cgg~lk~LSlrG~r~v~-------------------------------------------------~sslrt~~~~CpnI  166 (483)
T KOG4341|consen  136 CGGFLKELSLRGCRAVG-------------------------------------------------DSSLRTFASNCPNI  166 (483)
T ss_pred             hccccccccccccccCC-------------------------------------------------cchhhHHhhhCCch
Confidence            5 477777776322111                                                 11222223345555


Q ss_pred             cEEEeece-eecCCC---C-CCCCCCceeeeee-EeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979          160 VELEVKNA-WLSVDN---L-NQMPMLTKLTLEF-IRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV  233 (452)
Q Consensus       160 ~~L~L~~~-~~d~~~---l-~~fp~Lr~L~L~~-v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~  233 (452)
                      ++|.+-++ +++...   + ..++.|++|+|.. ..+++.+|.++..+||+|++|++.+|.-.     +...++++.-+-
T Consensus       167 ehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi-----~~~gv~~~~rG~  241 (483)
T KOG4341|consen  167 EHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI-----SGNGVQALQRGC  241 (483)
T ss_pred             hhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh-----hcCcchHHhccc
Confidence            55555553 222111   1 3456677777655 66677777777777777777777554322     111111110000


Q ss_pred             c-----------CCc----ceEEecCCceeEEEeeeecC--Cceeee----CCccceEEE----eecccccccc-cccCc
Q 012979          234 S-----------NAP----LSLAIYAPNLVKLELRCVKP--KSLVLQ----TPLLHDFCL----SLEVANEIRF-QEFRN  287 (452)
Q Consensus       234 s-----------~~~----~~l~~~aP~Le~L~l~~~~~--~~l~i~----~p~L~~~~l----~i~~~~~~~l-~~~~~  287 (452)
                      .           ..+    ..+.-+.+-+.++++..+..  +.-++.    ...|..+..    .+++.....+ .++.+
T Consensus       242 ~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~  321 (483)
T KOG4341|consen  242 KELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHN  321 (483)
T ss_pred             hhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCc
Confidence            0           000    00111222233333211100  000000    000011000    0111111111 25677


Q ss_pred             ccEEEEeecc-c--cccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhhhhhccccCcc
Q 012979          288 LMNLQLESSS-L--SSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRL  364 (452)
Q Consensus       288 L~~L~l~~~~-~--~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~~~~~~~~~~~  364 (452)
                      |+.|.+..+. |  ..++.+.+.++.|++|.+.-.....+.     .+..+-.+||.|+.|.+.   +.+.....+.--+
T Consensus       322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~-----tL~sls~~C~~lr~lsls---hce~itD~gi~~l  393 (483)
T KOG4341|consen  322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG-----TLASLSRNCPRLRVLSLS---HCELITDEGIRHL  393 (483)
T ss_pred             eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh-----hHhhhccCCchhccCChh---hhhhhhhhhhhhh
Confidence            7777776422 1  122444567888888775433222222     145889999999999984   2111111100000


Q ss_pred             c-cccccccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEeccCCchHHhhhhhcccccCCCcee
Q 012979          365 E-IRTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDSITASNLISSCTVDHPRVR  433 (452)
Q Consensus       365 ~-~~~~~~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (452)
                      . ...-..++..+.+..-++-.++.++++    ..|+.||++++.=++....+    .|+.-+++-|++.
T Consensus       394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l----~~c~~Leri~l~~~q~vtk~----~i~~~~~~lp~i~  455 (483)
T KOG4341|consen  394 SSSSCSLEGLEVLELDNCPLITDATLEHL----SICRNLERIELIDCQDVTKE----AISRFATHLPNIK  455 (483)
T ss_pred             hhccccccccceeeecCCCCchHHHHHHH----hhCcccceeeeechhhhhhh----hhHHHHhhCccce
Confidence            0 111224666666776565456677766    78899999776655554333    6777777877764

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.26  E-value=6.2e-07  Score=64.03  Aligned_cols=35  Identities=34%  Similarity=0.590  Sum_probs=31.2

Q ss_pred             CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979            3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK   38 (452)
Q Consensus         3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~   38 (452)
                      +.||+||+.+|+++| +.+|.++++.|||+|+.+..
T Consensus         2 ~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    2 SSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred             hHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHC
Confidence            689999999999999 59999999999999999863

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=97.96  E-value=8e-06  Score=59.48  Aligned_cols=38  Identities=16%  Similarity=0.104  Sum_probs=35.8

Q ss_pred             ccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEe
Q 012979          371 KVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLI  409 (452)
Q Consensus       371 ~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~  409 (452)
                      +|||.+.++.|.|. +.|++|++||++||++||+|+|.+
T Consensus        14 s~Lk~v~~~~f~g~-~~e~~f~~yil~na~~Lk~m~i~~   51 (51)
T PF08387_consen   14 SHLKFVEIKGFRGE-ENELEFAKYILENAPVLKKMTISF   51 (51)
T ss_pred             heeEEEEEEeeeCc-HHHHHHHHHHHhhhhhhcEEEEEC
Confidence            79999999999995 999999999999999999999963

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.93  E-value=1.5e-05  Score=54.54  Aligned_cols=32  Identities=47%  Similarity=0.645  Sum_probs=30.5

Q ss_pred             CcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhh
Q 012979            5 LPQPLILEILSRLTDSADLARCRVVSKTLNSLC   37 (452)
Q Consensus         5 LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~   37 (452)
                      ||+|++.+|+++|+ .+|+++++.+||+|+.+.
T Consensus         1 lP~~ll~~I~~~l~-~~d~~~~~~vc~~~~~~~   32 (41)
T smart00256        1 LPDEILEEILSKLP-PKDLLRLRKVSRRWRSLI   32 (41)
T ss_pred             CCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence            79999999999995 899999999999999986

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=97.78  E-value=9e-06  Score=57.99  Aligned_cols=36  Identities=42%  Similarity=0.556  Sum_probs=30.4

Q ss_pred             CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc
Q 012979            3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE   39 (452)
Q Consensus         3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~   39 (452)
                      +.||+|++.+|+++|+ .+|+++++.+||+|+.+...
T Consensus         4 ~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~   39 (48)
T PF00646_consen    4 SDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDS   39 (48)
T ss_dssp             HHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred             HHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence            5799999999999995 99999999999999998643

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.72  E-value=0.00013  Score=83.99  Aligned_cols=60  Identities=20%  Similarity=0.217  Sum_probs=30.4

Q ss_pred             ccCcccEEEEeecccc-ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          284 EFRNLMNLQLESSSLS-SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       284 ~~~~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      ++.+|++|+++...+. .+...+..+++++.|.+.-...       .-.++..+..+|+|+.|++...
T Consensus       282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~-------~~~~~~~~~~l~~L~~L~L~~n  342 (968)
T PLN00113        282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF-------TGKIPVALTSLPRLQVLQLWSN  342 (968)
T ss_pred             hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCcc-------CCcCChhHhcCCCCCEEECcCC
Confidence            4556666666533221 1122234455666655421110       0113455778888888888654

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=97.70  E-value=1.4e-05  Score=84.18  Aligned_cols=104  Identities=21%  Similarity=0.248  Sum_probs=58.7

Q ss_pred             cCCceeEEEeeeecCCce----eeeCCccceEEEe---ecccccccccccCcccEEEEee----ccccccccccccCCce
Q 012979          243 YAPNLVKLELRCVKPKSL----VLQTPLLHDFCLS---LEVANEIRFQEFRNLMNLQLES----SSLSSLINTFPFGKTI  311 (452)
Q Consensus       243 ~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~---i~~~~~~~l~~~~~L~~L~l~~----~~~~~~~~l~~~~p~l  311 (452)
                      .+|+|+-|++.......+    ......|+.+.+.   |++..+..+.|+.+||+|+++.    +.++.....+..+|++
T Consensus       315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~L  394 (873)
T KOG4194|consen  315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSL  394 (873)
T ss_pred             hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhh
Confidence            567777777653321111    1112234443332   2333455666888999999874    3334334556678999


Q ss_pred             eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979          312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS  353 (452)
Q Consensus       312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~  353 (452)
                      ++|.+.=    ++.+-.   +-.-+.-+|+||.|++++++-.
T Consensus       395 rkL~l~g----Nqlk~I---~krAfsgl~~LE~LdL~~Naia  429 (873)
T KOG4194|consen  395 RKLRLTG----NQLKSI---PKRAFSGLEALEHLDLGDNAIA  429 (873)
T ss_pred             hheeecC----ceeeec---chhhhccCcccceecCCCCcce
Confidence            9988631    111111   1255678999999999876443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=97.68  E-value=0.00012  Score=84.38  Aligned_cols=188  Identities=20%  Similarity=0.077  Sum_probs=87.6

Q ss_pred             cccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccccc-ccCc--cccccc
Q 012979          153 SSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGF-RQPK--IHLLHL  226 (452)
Q Consensus       153 ~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~-~~~~--l~~~sL  226 (452)
                      ..++++|+.|+|++..+ .  +..+..+++|++|+|.+-.+.... ..-+..+++|++|.|.++.-. ..+.  -.+++|
T Consensus       160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  238 (968)
T PLN00113        160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI-PRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL  238 (968)
T ss_pred             HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcC-ChHHcCcCCccEEECcCCccCCcCChhHhcCCCC
Confidence            34566677777765322 1  234566667777776654443211 112344667777766543211 1111  224566


Q ss_pred             cEEEeeecC----CcceEEecCCceeEEEeeeecCCc----eeeeCCccceEEEeeccc---ccccccccCcccEEEEee
Q 012979          227 KSCLWTVSN----APLSLAIYAPNLVKLELRCVKPKS----LVLQTPLLHDFCLSLEVA---NEIRFQEFRNLMNLQLES  295 (452)
Q Consensus       227 r~l~l~~s~----~~~~l~~~aP~Le~L~l~~~~~~~----l~i~~p~L~~~~l~i~~~---~~~~l~~~~~L~~L~l~~  295 (452)
                      +++.+....    .+..+. ..++|++|.+.......    ..-+.+.|+.+.+.-.+.   ....+.++.+|+.|+++.
T Consensus       239 ~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~  317 (968)
T PLN00113        239 NHLDLVYNNLTGPIPSSLG-NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS  317 (968)
T ss_pred             CEEECcCceeccccChhHh-CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence            666443211    111222 45677777764321100    001123344443321110   001234677888888875


Q ss_pred             cccc-ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979          296 SSLS-SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP  349 (452)
Q Consensus       296 ~~~~-~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~  349 (452)
                      ..+. .+...+..+++++.|.+.-....       -.++..+..+++|+.|++..
T Consensus       318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~-------~~~p~~l~~~~~L~~L~Ls~  365 (968)
T PLN00113        318 NNFTGKIPVALTSLPRLQVLQLWSNKFS-------GEIPKNLGKHNNLTVLDLST  365 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCCCCc-------CcCChHHhCCCCCcEEECCC
Confidence            4432 22233456778888776422110       11234555666666666643

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=97.67  E-value=4.9e-05  Score=59.26  Aligned_cols=44  Identities=7%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             ccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEeccCCch
Q 012979          371 KVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLIHREEDS  415 (452)
Q Consensus       371 ~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~~~~~~~  415 (452)
                      ++||++.++.|.| ...|++|+++|++||+.||+|+|..++...+
T Consensus         5 ~~Lk~v~i~~f~g-~~~e~~~~~~il~~a~~Lk~~~i~~~~~~~~   48 (72)
T smart00579        5 SSLEVLEIKGYRG-TEEEKELVKYFLENAPCLKKLTISVETSDDD   48 (72)
T ss_pred             heEEEEEEEeccC-cHHHHHHHHHHHhcchhheEEEEEeecCCcc
Confidence            6899999999999 5999999999999999999999999986544

>PLN03210 Resistant to P

Probab=97.19  E-value=0.0012  Score=77.71  Aligned_cols=58  Identities=17%  Similarity=0.210  Sum_probs=27.9

Q ss_pred             cCCCCcEEEeeceeec--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccc
Q 012979          155 CCKSLVELEVKNAWLS--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVG  214 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~  214 (452)
                      ..++|++|+|.+..+.  +.+...+++|++|+|.+.... ..+.. ++.+|+||+|+|.+|.
T Consensus       609 ~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l-~~ip~-ls~l~~Le~L~L~~c~  668 (1153)
T PLN03210        609 RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNL-KEIPD-LSMATNLETLKLSDCS  668 (1153)
T ss_pred             CccCCcEEECcCccccccccccccCCCCCEEECCCCCCc-CcCCc-cccCCcccEEEecCCC
Confidence            3456666666653221  223455666666666542110 01111 3446666666665553

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=97.09  E-value=0.00019  Score=71.23  Aligned_cols=85  Identities=32%  Similarity=0.291  Sum_probs=51.0

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecC-------CCCCCC-CCCceeeeeeEeecch---h
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSV-------DNLNQM-PMLTKLTLEFIRLEDE---D  194 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~-------~~l~~f-p~Lr~L~L~~v~i~~~---~  194 (452)
                      ...+++|++++.....  ..+..+...... ++|++|+|.++.+..       ..+..+ ++|++|+|.+..+.+.   .
T Consensus        80 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          80 GCGLQELDLSDNALGP--DGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             cCceeEEEccCCCCCh--hHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            5688888886432210  011112222222 568899998743321       123456 8889999988888743   3


Q ss_pred             HHHHhccCCcCCeEEEecc
Q 012979          195 LDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       195 L~~ll~~cP~Le~L~L~~~  213 (452)
                      +...+..++.|++|.|.++
T Consensus       157 ~~~~~~~~~~L~~L~l~~n  175 (319)
T cd00116         157 LAKALRANRDLKELNLANN  175 (319)
T ss_pred             HHHHHHhCCCcCEEECcCC
Confidence            4455667788999988664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.82  E-value=0.00035  Score=77.34  Aligned_cols=148  Identities=18%  Similarity=0.280  Sum_probs=86.8

Q ss_pred             CCCcEEEeeceeecCCC----C-CCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEe
Q 012979          157 KSLVELEVKNAWLSVDN----L-NQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLW  231 (452)
Q Consensus       157 ~~L~~L~L~~~~~d~~~----l-~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l  231 (452)
                      .+|+.|+++|...-..+    + ..||+|++|.++++.+..+++..+-+.+|+|..|++.++. +...            
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl------------  188 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL------------  188 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc------------
Confidence            57889999873111122    2 3679999999999999888899999999999999997642 2111            


Q ss_pred             eecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccc-cccccccCcccEEEEeeccccccccc------
Q 012979          232 TVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVAN-EIRFQEFRNLMNLQLESSSLSSLINT------  304 (452)
Q Consensus       232 ~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~l------  304 (452)
                            ..++ +.+|||.|.+..-                 .++..+ -..+.++.+|+.|+|+-+......+.      
T Consensus       189 ------~GIS-~LknLq~L~mrnL-----------------e~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYle  244 (699)
T KOG3665|consen  189 ------SGIS-RLKNLQVLSMRNL-----------------EFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLE  244 (699)
T ss_pred             ------HHHh-ccccHHHHhccCC-----------------CCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHH
Confidence                  1133 5667777765211                 111111 12445677888888864221111111      


Q ss_pred             -cccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979          305 -FPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL  347 (452)
Q Consensus       305 -~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I  347 (452)
                       -..+|+|+-|+..  ..+-+.+.    +..+++.+|||++.-+
T Consensus       245 c~~~LpeLrfLDcS--gTdi~~~~----le~ll~sH~~L~~i~~  282 (699)
T KOG3665|consen  245 CGMVLPELRFLDCS--GTDINEEI----LEELLNSHPNLQQIAA  282 (699)
T ss_pred             hcccCccccEEecC--CcchhHHH----HHHHHHhCccHhhhhh
Confidence             1236777775532  11122222    3478888888887654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=96.71  E-value=0.00031  Score=71.95  Aligned_cols=82  Identities=21%  Similarity=0.224  Sum_probs=40.4

Q ss_pred             cccCCCCcEEEeeceee-cC---CC-CCCCCCCceeeeeeEeec---chhHHHHhccCCcCCeEEEecccccccCccccc
Q 012979          153 SSCCKSLVELEVKNAWL-SV---DN-LNQMPMLTKLTLEFIRLE---DEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLL  224 (452)
Q Consensus       153 ~~~c~~L~~L~L~~~~~-d~---~~-l~~fp~Lr~L~L~~v~i~---~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~  224 (452)
                      +..|++++.|+|....+ ..   .. +..||+|+.|+|+.-++.   ++-...   ..+.|..|+|.+|+-.+.      
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~---~l~~lK~L~l~~CGls~k------  212 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL---LLSHLKQLVLNSCGLSWK------  212 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh---hhhhhheEEeccCCCCHH------
Confidence            34566666666664211 11   11 245666666666655552   111111   256666666655531111      


Q ss_pred             cccEEEeeecCCcceEEecCCceeEEEeee
Q 012979          225 HLKSCLWTVSNAPLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       225 sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~  254 (452)
                                ++ ..+....|+|+.|.+..
T Consensus       213 ----------~V-~~~~~~fPsl~~L~L~~  231 (505)
T KOG3207|consen  213 ----------DV-QWILLTFPSLEVLYLEA  231 (505)
T ss_pred             ----------HH-HHHHHhCCcHHHhhhhc
Confidence                      11 12444678888887753

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=96.70  E-value=0.0008  Score=66.68  Aligned_cols=89  Identities=24%  Similarity=0.077  Sum_probs=53.0

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec--C-CCCCCC---CCCceeeeeeEeecchhHHH--
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS--V-DNLNQM---PMLTKLTLEFIRLEDEDLDK--  197 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d--~-~~l~~f---p~Lr~L~L~~v~i~~~~L~~--  197 (452)
                      .+++++|.+........-..-..++.....+++|+.|+|+++.+.  . ..+..+   ++|++|+|.+..+.+..+..  
T Consensus        50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~  129 (319)
T cd00116          50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLA  129 (319)
T ss_pred             CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHH
Confidence            356888888632110000000112223335789999999975332  1 122233   55999999998888655544  


Q ss_pred             -HhccC-CcCCeEEEeccc
Q 012979          198 -VNDCF-PCLQVLNLVGVG  214 (452)
Q Consensus       198 -ll~~c-P~Le~L~L~~~~  214 (452)
                       .+..+ |+|+.|.|.+|.
T Consensus       130 ~~l~~~~~~L~~L~L~~n~  148 (319)
T cd00116         130 KGLKDLPPALEKLVLGRNR  148 (319)
T ss_pred             HHHHhCCCCceEEEcCCCc
Confidence             34556 999999998764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PLN03210 Resistant to P

Probab=96.68  E-value=0.0085  Score=70.58  Aligned_cols=187  Identities=17%  Similarity=0.113  Sum_probs=94.8

Q ss_pred             ccCCCCcEEEeece-ee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccC--ccccccccEE
Q 012979          154 SCCKSLVELEVKNA-WL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQP--KIHLLHLKSC  229 (452)
Q Consensus       154 ~~c~~L~~L~L~~~-~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~--~l~~~sLr~l  229 (452)
                      ..+++|+.|+|++. .+ ..+.+..+++|++|+|.+.... ..+..-+..+++|++|++.+|......  .+.+++|+.+
T Consensus       631 ~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L  709 (1153)
T PLN03210        631 HSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRL  709 (1153)
T ss_pred             ccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEE
Confidence            45788999999863 22 3456777899999998753211 112223455889999999877544332  2456778877


Q ss_pred             EeeecCCcceEEecCCceeEEEeeeecCCce--eeeCCccceEEEee---c-------ccccccccccCcccEEEEeecc
Q 012979          230 LWTVSNAPLSLAIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLSL---E-------VANEIRFQEFRNLMNLQLESSS  297 (452)
Q Consensus       230 ~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~i---~-------~~~~~~l~~~~~L~~L~l~~~~  297 (452)
                      .+.-......+....++|+.|.+.......+  .+..+.|.++.+.-   .       ..+.......++|++|+++...
T Consensus       710 ~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~  789 (1153)
T PLN03210        710 NLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIP  789 (1153)
T ss_pred             eCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCC
Confidence            5432211112222346788888754431111  01122333322210   0       0000111123477777776421


Q ss_pred             -ccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979          298 -LSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP  349 (452)
Q Consensus       298 -~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~  349 (452)
                       ...+...+..+++|+.|.+.- |...  ..    +|... .+++|++|++.+
T Consensus       790 ~l~~lP~si~~L~~L~~L~Ls~-C~~L--~~----LP~~~-~L~sL~~L~Ls~  834 (1153)
T PLN03210        790 SLVELPSSIQNLHKLEHLEIEN-CINL--ET----LPTGI-NLESLESLDLSG  834 (1153)
T ss_pred             CccccChhhhCCCCCCEEECCC-CCCc--Ce----eCCCC-CccccCEEECCC
Confidence             222233345677788877521 1100  01    12222 577888888864

syringae 6; Provisional

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.00077  Score=66.18  Aligned_cols=127  Identities=22%  Similarity=0.232  Sum_probs=82.9

Q ss_pred             cCCceEEEeee-cccccccccccccceecccCCCCcEEEeeceeecCCCC-----CCCCCCceeeeeeEe--ecchhHHH
Q 012979          126 CEELKFLSISD-CWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNL-----NQMPMLTKLTLEFIR--LEDEDLDK  197 (452)
Q Consensus       126 ~~~L~eL~l~~-~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~l-----~~fp~Lr~L~L~~v~--i~~~~L~~  197 (452)
                      ..+|++|.|+- .|.     .+..+..+..+|+.|..|+|.+|+.-.+..     ..=++|+.|+|.+.+  +....+.-
T Consensus       233 N~~L~~lnlsm~sG~-----t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t  307 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGF-----TENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST  307 (419)
T ss_pred             cccceeecccccccc-----chhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH
Confidence            57889999872 222     223556667789999999999976533322     234889999998763  34678999


Q ss_pred             HhccCCcCCeEEEecccccccCc----cccccccEEEeeec-C-Ccc--eEEecCCceeEEEeeeecC
Q 012979          198 VNDCFPCLQVLNLVGVGGFRQPK----IHLLHLKSCLWTVS-N-APL--SLAIYAPNLVKLELRCVKP  257 (452)
Q Consensus       198 ll~~cP~Le~L~L~~~~g~~~~~----l~~~sLr~l~l~~s-~-~~~--~l~~~aP~Le~L~l~~~~~  257 (452)
                      +.+.||+|.+|+|..+.......    .+++-|+++.++-+ + .++  .-.-..|+|.+|+..+..+
T Consensus       308 L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  308 LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             HHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            99999999999997654433322    34666777633311 1 111  1123678888888765443

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.21  E-value=0.0054  Score=38.09  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.7

Q ss_pred             CCceeeeeeEeecch-hHHHHhccCC
Q 012979          179 MLTKLTLEFIRLEDE-DLDKVNDCFP  203 (452)
Q Consensus       179 ~Lr~L~L~~v~i~~~-~L~~ll~~cP  203 (452)
                      +||+|.|..|.+.++ +++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999999765 8999999998

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=96.20  E-value=0.00081  Score=71.21  Aligned_cols=166  Identities=19%  Similarity=0.212  Sum_probs=94.2

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeece---eecCCCCCCCCCCceeeeeeEeec---chhHHHH
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNA---WLSVDNLNQMPMLTKLTLEFIRLE---DEDLDKV  198 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~v~i~---~~~L~~l  198 (452)
                      ++.++++|+|....-++.-      .--.++...|+.|+|++.   -+.+.++.-.+.|++|+|++-.++   ++++.. 
T Consensus       267 ~l~kme~l~L~~N~l~~vn------~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~-  339 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVN------EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV-  339 (873)
T ss_pred             eecccceeecccchhhhhh------cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH-
Confidence            4678888888622111110      111456778999999963   345667888899999999887775   455544 


Q ss_pred             hccCCcCCeEEEeccc--ccccCc-cccccccEEEe-------eecCCcceEEecCCceeEEEeeeecCCceeeeCCccc
Q 012979          199 NDCFPCLQVLNLVGVG--GFRQPK-IHLLHLKSCLW-------TVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLH  268 (452)
Q Consensus       199 l~~cP~Le~L~L~~~~--g~~~~~-l~~~sLr~l~l-------~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~  268 (452)
                         +..||+|+|....  ...... .-+++|+.+.+       ++.+...... ..|+|.+|.+.+.+.           
T Consensus       340 ---L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~-gl~~LrkL~l~gNql-----------  404 (873)
T KOG4194|consen  340 ---LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN-GLPSLRKLRLTGNQL-----------  404 (873)
T ss_pred             ---HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc-cchhhhheeecCcee-----------
Confidence               6778999985321  011111 12344444411       1122222222 467777777643321           


Q ss_pred             eEEEeecccccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEec
Q 012979          269 DFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELL  319 (452)
Q Consensus       269 ~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~  319 (452)
                            ...++--+.|+.+||+|++++..+.++ ...+..+ .+|+|.+...
T Consensus       405 ------k~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs  449 (873)
T KOG4194|consen  405 ------KSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS  449 (873)
T ss_pred             ------eecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence                  112334667889999999986554432 2223333 7888877643

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.78  E-value=0.0028  Score=58.34  Aligned_cols=15  Identities=33%  Similarity=0.457  Sum_probs=2.9

Q ss_pred             CCCCCCCCceeeeee
Q 012979          173 NLNQMPMLTKLTLEF  187 (452)
Q Consensus       173 ~l~~fp~Lr~L~L~~  187 (452)
                      ++..+++|++|.|.+
T Consensus        59 ~l~~L~~L~~L~L~~   73 (175)
T PF14580_consen   59 GLPGLPRLKTLDLSN   73 (175)
T ss_dssp             T----TT--EEE--S
T ss_pred             CccChhhhhhcccCC
Confidence            333444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=95.55  E-value=0.0035  Score=57.66  Aligned_cols=112  Identities=25%  Similarity=0.303  Sum_probs=47.6

Q ss_pred             hcchhhcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC-CC-CCCCCCceeeeeeEeecc-hhH
Q 012979          120 NWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD-NL-NQMPMLTKLTLEFIRLED-EDL  195 (452)
Q Consensus       120 ~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~-~l-~~fp~Lr~L~L~~v~i~~-~~L  195 (452)
                      ..+......++.|++++..-.       .++-+ ..++.|++|+|.+..+ +.. ++ ..||+|++|.|.+-.|.+ .++
T Consensus        35 e~L~~~l~~L~~L~Ls~N~I~-------~l~~l-~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I~~l~~l  106 (175)
T PF14580_consen   35 ENLGATLDKLEVLDLSNNQIT-------KLEGL-PGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKISDLNEL  106 (175)
T ss_dssp             -S--TT-TT--EEE-TTS--S---------TT-----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS---SCCCC
T ss_pred             cchhhhhcCCCEEECCCCCCc-------cccCc-cChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcCCChHHh
Confidence            345445678899998754221       12221 2467899999997444 332 23 368999999999888876 667


Q ss_pred             HHHhccCCcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeee
Q 012979          196 DKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCV  255 (452)
Q Consensus       196 ~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~  255 (452)
                      .. ++.||.|+.|+|.|+.-....               +.-..+.-..|+|+.|+....
T Consensus       107 ~~-L~~l~~L~~L~L~~NPv~~~~---------------~YR~~vi~~lP~Lk~LD~~~V  150 (175)
T PF14580_consen  107 EP-LSSLPKLRVLSLEGNPVCEKK---------------NYRLFVIYKLPSLKVLDGQDV  150 (175)
T ss_dssp             GG-GGG-TT--EEE-TT-GGGGST---------------THHHHHHHH-TT-SEETTEET
T ss_pred             HH-HHcCCCcceeeccCCcccchh---------------hHHHHHHHHcChhheeCCEEc
Confidence            66 588999999999764322111               111124447788888887543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=95.22  E-value=0.0068  Score=60.75  Aligned_cols=40  Identities=25%  Similarity=0.191  Sum_probs=31.5

Q ss_pred             CCCCCCCceeeeeeEeec---chhHHHHhccCCcCCeEEEecc
Q 012979          174 LNQMPMLTKLTLEFIRLE---DEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       174 l~~fp~Lr~L~L~~v~i~---~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      +...|+|++|+|+.-.+.   .+.|..+|+.|..||+|-|..|
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~  130 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC  130 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC
Confidence            456677778888776664   3678899999999999999765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=95.13  E-value=0.016  Score=43.18  Aligned_cols=54  Identities=24%  Similarity=0.329  Sum_probs=29.1

Q ss_pred             CCcEEEeece---eecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          158 SLVELEVKNA---WLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       158 ~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      +|++|+|.+.   .++...+..+++|++|+|.+-.+..-.- ..+..+|.|++|.+.+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEET-TTTTTSTTESEEEETS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcC
Confidence            4666666653   2223345666777777776655531110 1234477777777654

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.0058  Score=62.87  Aligned_cols=124  Identities=19%  Similarity=0.143  Sum_probs=77.1

Q ss_pred             hcCCceEEEee-e-cccccccccccccceecccCCCCcEEEeec-eeecC---CCCCCCCCCceeeeeeEeecchhHHHH
Q 012979          125 VCEELKFLSIS-D-CWFQSCWRKSEVLAFISSCCKSLVELEVKN-AWLSV---DNLNQMPMLTKLTLEFIRLEDEDLDKV  198 (452)
Q Consensus       125 ~~~~L~eL~l~-~-~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~-~~~d~---~~l~~fp~Lr~L~L~~v~i~~~~L~~l  198 (452)
                      .+..+++|+|+ | .+.   |   ..+--+..-.++|+.|.|+. .+..+   ..-..++|||.|.|+...++-.++..+
T Consensus       144 ~~~~v~~LdLS~NL~~n---w---~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~  217 (505)
T KOG3207|consen  144 ILPNVRDLDLSRNLFHN---W---FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWI  217 (505)
T ss_pred             hCCcceeecchhhhHHh---H---HHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHH
Confidence            45677888886 3 211   1   11223344678999999984 33222   123478999999999999999999999


Q ss_pred             hccCCcCCeEEEecccccc---cCccccccccEEEeee----cCCcceEEecCCceeEEEeee
Q 012979          199 NDCFPCLQVLNLVGVGGFR---QPKIHLLHLKSCLWTV----SNAPLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       199 l~~cP~Le~L~L~~~~g~~---~~~l~~~sLr~l~l~~----s~~~~~l~~~aP~Le~L~l~~  254 (452)
                      +..||.||.|.|.+..+..   ...=.++.|+.|.+.-    +-..-...-+.|+|.-|.+..
T Consensus       218 ~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~  280 (505)
T KOG3207|consen  218 LLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS  280 (505)
T ss_pred             HHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence            9999999999998763321   1112245555552221    101112333566777766643

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=94.38  E-value=0.0024  Score=58.21  Aligned_cols=152  Identities=17%  Similarity=0.153  Sum_probs=87.6

Q ss_pred             ccCCCCcEEEeec-ee-ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEe
Q 012979          154 SCCKSLVELEVKN-AW-LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLW  231 (452)
Q Consensus       154 ~~c~~L~~L~L~~-~~-~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l  231 (452)
                      ++....++|.|+. .. .-+|.+..+.+|+.|++..-.|++  |---++++|.|.+|++.-.    +.            
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmn----rl------------   91 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMN----RL------------   91 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchh----hh------------
Confidence            3556788888885 32 235678889999999998766653  2223466899999998421    11            


Q ss_pred             eecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccccccccccCCce
Q 012979          232 TVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTI  311 (452)
Q Consensus       232 ~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~l  311 (452)
                        ...+..+. ..|-||.|++.......-.  .             | =.+..+..|+.|+++..+|+-+-.-+...+++
T Consensus        92 --~~lprgfg-s~p~levldltynnl~e~~--l-------------p-gnff~m~tlralyl~dndfe~lp~dvg~lt~l  152 (264)
T KOG0617|consen   92 --NILPRGFG-SFPALEVLDLTYNNLNENS--L-------------P-GNFFYMTTLRALYLGDNDFEILPPDVGKLTNL  152 (264)
T ss_pred             --hcCccccC-CCchhhhhhcccccccccc--C-------------C-cchhHHHHHHHHHhcCCCcccCChhhhhhcce
Confidence              11222344 6688999998543221000  0             0 02233456667778877776544444555566


Q ss_pred             eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +.|.+.-.      +.  +.+|.=++.+..|++|||.++
T Consensus       153 qil~lrdn------dl--l~lpkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  153 QILSLRDN------DL--LSLPKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             eEEeeccC------ch--hhCcHHHHHHHHHHHHhcccc
Confidence            66554211      11  224444555667777887664

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.32  E-value=0.035  Score=57.98  Aligned_cols=62  Identities=29%  Similarity=0.432  Sum_probs=31.0

Q ss_pred             cccCCCCcEEEeecee-ecCCCC----CCCCCCceeeeeeEe-ecchhHHHHhccCCcCCeEEEeccc
Q 012979          153 SSCCKSLVELEVKNAW-LSVDNL----NQMPMLTKLTLEFIR-LEDEDLDKVNDCFPCLQVLNLVGVG  214 (452)
Q Consensus       153 ~~~c~~L~~L~L~~~~-~d~~~l----~~fp~Lr~L~L~~v~-i~~~~L~~ll~~cP~Le~L~L~~~~  214 (452)
                      ...|+.|+.|+|.++. +...++    ..+|+|++|.+.... ++++.+..+...||+|++|+|.+|.
T Consensus       239 ~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  239 LSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3345556666655532 211111    125566666554333 5566666666666666666665543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.79  E-value=0.022  Score=58.48  Aligned_cols=58  Identities=10%  Similarity=0.249  Sum_probs=28.9

Q ss_pred             cCcccEEEEeeccc--cccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979          285 FRNLMNLQLESSSL--SSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL  347 (452)
Q Consensus       285 ~~~L~~L~l~~~~~--~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I  347 (452)
                      ...|+.|++.+...  +...+-++.|+++|++.+ +++..-..    .....|-.++||++....
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l-~~~q~vtk----~~i~~~~~~lp~i~v~a~  459 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIEL-IDCQDVTK----EAISRFATHLPNIKVHAY  459 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeee-echhhhhh----hhhHHHHhhCccceehhh
Confidence            34555666654222  223344566777777544 33321000    112366777777776655

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.71  E-value=0.026  Score=59.03  Aligned_cols=86  Identities=26%  Similarity=0.327  Sum_probs=61.2

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeec-e-ee-cCC-----CCCCCCCCceeeeeeEe-ecchhHH
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKN-A-WL-SVD-----NLNQMPMLTKLTLEFIR-LEDEDLD  196 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~-~-~~-d~~-----~l~~fp~Lr~L~L~~v~-i~~~~L~  196 (452)
                      .+.+++|.+...+..    ....+..+...|+.|+.|++++ + .+ +.+     -...+++|+.|+|.+.. ++|..+.
T Consensus       187 ~~~L~~l~l~~~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~  262 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKI----TDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS  262 (482)
T ss_pred             CchhhHhhhcccccC----ChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence            577888877644321    1112445566899999999986 2 11 111     12456999999998888 8999999


Q ss_pred             HHhccCCcCCeEEEecccc
Q 012979          197 KVNDCFPCLQVLNLVGVGG  215 (452)
Q Consensus       197 ~ll~~cP~Le~L~L~~~~g  215 (452)
                      .+...||+||+|.+.+|..
T Consensus       263 ~l~~~c~~L~~L~l~~c~~  281 (482)
T KOG1947|consen  263 ALASRCPNLETLSLSNCSN  281 (482)
T ss_pred             HHHhhCCCcceEccCCCCc
Confidence            9999999999999866653

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=92.62  E-value=0.042  Score=55.20  Aligned_cols=79  Identities=25%  Similarity=0.201  Sum_probs=48.1

Q ss_pred             CCCCCCceeeeeeEeecch---hHHHHhccCCcCCeEEEecccccccCc----c---ccccccEEEeeec---C-----C
Q 012979          175 NQMPMLTKLTLEFIRLEDE---DLDKVNDCFPCLQVLNLVGVGGFRQPK----I---HLLHLKSCLWTVS---N-----A  236 (452)
Q Consensus       175 ~~fp~Lr~L~L~~v~i~~~---~L~~ll~~cP~Le~L~L~~~~g~~~~~----l---~~~sLr~l~l~~s---~-----~  236 (452)
                      ...|.|+...+.+..|.++   .+.--+..||+|+.|+|..+.-.....    .   ..++||.+.++-+   +     .
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            3458899999988888643   344556789999999996431111111    1   1345666644422   1     1


Q ss_pred             cceEEecCCceeEEEee
Q 012979          237 PLSLAIYAPNLVKLELR  253 (452)
Q Consensus       237 ~~~l~~~aP~Le~L~l~  253 (452)
                      ...+...+|+|+.|.+.
T Consensus       262 ~~al~~~~p~L~vl~l~  278 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELA  278 (382)
T ss_pred             HHHHhccCCCCceeccC
Confidence            22355568999999874

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=92.52  E-value=0.12  Score=53.14  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=33.5

Q ss_pred             CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979            3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK   38 (452)
Q Consensus         3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~   38 (452)
                      +.||+|||..|.++|+..-|..|.+.||+.||....
T Consensus         5 s~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          5 STLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             hhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            579999999999999988999999999999999854

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=92.23  E-value=0.13  Score=51.53  Aligned_cols=35  Identities=31%  Similarity=0.502  Sum_probs=32.2

Q ss_pred             CCCc----HHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979            3 EHLP----QPLILEILSRLTDSADLARCRVVSKTLNSLCK   38 (452)
Q Consensus         3 s~LP----d~lL~~ILS~L~~~kD~arts~lSkrWr~l~~   38 (452)
                      +.||    |+|..+|||+| |+.++++|-.+||+|+++-.
T Consensus        76 ~~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l~  114 (499)
T KOG0281|consen   76 TALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVLS  114 (499)
T ss_pred             HhcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHhc
Confidence            5789    99999999999 79999999999999998753

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=91.99  E-value=0.0057  Score=65.49  Aligned_cols=78  Identities=27%  Similarity=0.253  Sum_probs=47.2

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeece--eec--CCCCCCCCCCceeeeeeEeec--chhHHHHh
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNA--WLS--VDNLNQMPMLTKLTLEFIRLE--DEDLDKVN  199 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~--~~d--~~~l~~fp~Lr~L~L~~v~i~--~~~L~~ll  199 (452)
                      ...||.|+|++.+- ..+.. --||.    ..+|.+|++++.  ..+  |+.+..+.||+.++|++-.+.  ++++-.  
T Consensus       172 L~~LqtL~Ls~NPL-~hfQL-rQLPs----mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~--  243 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPL-NHFQL-RQLPS----MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYK--  243 (1255)
T ss_pred             HhhhhhhhcCCChh-hHHHH-hcCcc----chhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhh--
Confidence            46688888874311 00000 11333    346888888872  232  456778888888888776553  666655  


Q ss_pred             ccCCcCCeEEEecc
Q 012979          200 DCFPCLQVLNLVGV  213 (452)
Q Consensus       200 ~~cP~Le~L~L~~~  213 (452)
                        .++|..|+|.++
T Consensus       244 --l~~LrrLNLS~N  255 (1255)
T KOG0444|consen  244 --LRNLRRLNLSGN  255 (1255)
T ss_pred             --hhhhheeccCcC
Confidence              678888888653

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=91.90  E-value=0.068  Score=59.47  Aligned_cols=123  Identities=19%  Similarity=0.187  Sum_probs=74.3

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecCCC----CCCCCCCceeeeeeEeecchhHHHHhc
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDN----LNQMPMLTKLTLEFIRLEDEDLDKVND  200 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~----l~~fp~Lr~L~L~~v~i~~~~L~~ll~  200 (452)
                      ....||+|++.-  .+. +.. .-...++..+++|++|.+.|...+..+    ...||+|++|+++++.+++-   .-++
T Consensus       120 sr~nL~~LdI~G--~~~-~s~-~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS  192 (699)
T KOG3665|consen  120 SRQNLQHLDISG--SEL-FSN-GWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGIS  192 (699)
T ss_pred             HHHhhhhcCccc--cch-hhc-cHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHh
Confidence            457888888851  111 000 112233456789999999984333322    46899999999999877764   3356


Q ss_pred             cCCcCCeEEEeccccccc-Cc----cccccccEEEeeecC---C------cceEEecCCceeEEEeeee
Q 012979          201 CFPCLQVLNLVGVGGFRQ-PK----IHLLHLKSCLWTVSN---A------PLSLAIYAPNLVKLELRCV  255 (452)
Q Consensus       201 ~cP~Le~L~L~~~~g~~~-~~----l~~~sLr~l~l~~s~---~------~~~l~~~aP~Le~L~l~~~  255 (452)
                      ..++||.|.+..-. ... ..    -.+++||.|.++.+.   .      ...-....|+|+.|+..++
T Consensus       193 ~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT  260 (699)
T KOG3665|consen  193 RLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT  260 (699)
T ss_pred             ccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence            78999999885321 211 11    346778887544321   0      1123345899999997543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=91.45  E-value=0.13  Score=36.08  Aligned_cols=34  Identities=29%  Similarity=0.320  Sum_probs=18.5

Q ss_pred             CCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          178 PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       178 p~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      |+|++|+|.+..|++  +...++.||+|++|++.++
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCC
Confidence            456666666655552  4343456666666666543

...

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=91.38  E-value=0.029  Score=62.68  Aligned_cols=106  Identities=21%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             cccceecccCCCCcEEEeeceeec-CC--CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc-cc
Q 012979          147 EVLAFISSCCKSLVELEVKNAWLS-VD--NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK-IH  222 (452)
Q Consensus       147 ~~L~~~~~~c~~L~~L~L~~~~~d-~~--~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~-l~  222 (452)
                      .+.|.+. +.+.|++|+|.+..+. .|  .+.+|+.|++|.|++-++..=+  .=++.|+.|++|...+..-.--|. ..
T Consensus       374 ~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp--~tva~~~~L~tL~ahsN~l~~fPe~~~  450 (1081)
T KOG0618|consen  374 SCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP--DTVANLGRLHTLRAHSNQLLSFPELAQ  450 (1081)
T ss_pred             cchhhhc-cccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh--HHHHhhhhhHHHhhcCCceeechhhhh
Confidence            4445444 4567888888764332 22  3567777888887776665322  113457778877775433222333 33


Q ss_pred             cccccEEEeeec---CCcceEEecCCceeEEEeeee
Q 012979          223 LLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCV  255 (452)
Q Consensus       223 ~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~  255 (452)
                      ++.|+++.++-.   .+...-....|+|++|++.+.
T Consensus       451 l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  451 LPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             cCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence            677777743321   111112223368888888653

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=91.22  E-value=0.67  Score=52.22  Aligned_cols=12  Identities=8%  Similarity=-0.083  Sum_probs=6.2

Q ss_pred             CCCceeeeeeEe
Q 012979          178 PMLTKLTLEFIR  189 (452)
Q Consensus       178 p~Lr~L~L~~v~  189 (452)
                      ++|++|+|.+-.
T Consensus       220 ~nL~~L~Ls~N~  231 (754)
T PRK15370        220 GNIKTLYANSNQ  231 (754)
T ss_pred             cCCCEEECCCCc
Confidence            455555555433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.18  E-value=0.26  Score=46.28  Aligned_cols=83  Identities=25%  Similarity=0.292  Sum_probs=55.2

Q ss_pred             cCCCCcEEEeec-e--eecCCCC-CCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEecccccccCccccccccEE
Q 012979          155 CCKSLVELEVKN-A--WLSVDNL-NQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSC  229 (452)
Q Consensus       155 ~c~~L~~L~L~~-~--~~d~~~l-~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l  229 (452)
                      ..+.|.+|.|++ .  .+++ .+ ..+|+|++|.|.+-.+.. .+|+. |+.||.|++|.+.|..-....          
T Consensus        62 ~l~rL~tLll~nNrIt~I~p-~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Npv~~k~----------  129 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDP-DLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNPVEHKK----------  129 (233)
T ss_pred             CccccceEEecCCcceeecc-chhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCchhccc----------
Confidence            356789999996 2  3333 44 466999999998877764 67777 588999999999874311111          


Q ss_pred             EeeecCCcceEEecCCceeEEEeee
Q 012979          230 LWTVSNAPLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       230 ~l~~s~~~~~l~~~aP~Le~L~l~~  254 (452)
                           +.-+-+.=..|+|+.|+...
T Consensus       130 -----~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  130 -----NYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             -----CceeEEEEecCcceEeehhh
Confidence                 11122333678899998753

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=90.89  E-value=0.61  Score=52.54  Aligned_cols=51  Identities=18%  Similarity=0.225  Sum_probs=23.6

Q ss_pred             CCCcEEEeeceeec-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          157 KSLVELEVKNAWLS-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       157 ~~L~~L~L~~~~~d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ++|++|+|.+..+. .+. .-+++|+.|+|.+..+..  +..-+  ..+|+.|+|.+
T Consensus       220 ~nL~~L~Ls~N~LtsLP~-~l~~~L~~L~Ls~N~L~~--LP~~l--~s~L~~L~Ls~  271 (754)
T PRK15370        220 GNIKTLYANSNQLTSIPA-TLPDTIQEMELSINRITE--LPERL--PSALQSLDLFH  271 (754)
T ss_pred             cCCCEEECCCCccccCCh-hhhccccEEECcCCccCc--CChhH--hCCCCEEECcC
Confidence            35666666653221 111 122466667666655441  11101  23567777643

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=90.85  E-value=0.27  Score=36.49  Aligned_cols=53  Identities=23%  Similarity=0.246  Sum_probs=36.5

Q ss_pred             CceEEEeeecccccccccccccce-ecccCCCCcEEEeece---eecCCCCCCCCCCceeeeee
Q 012979          128 ELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNA---WLSVDNLNQMPMLTKLTLEF  187 (452)
Q Consensus       128 ~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~  187 (452)
                      .|++|++++..-       ..+|. ...++++|++|+|++.   .+++..+..+|+|++|+|.+
T Consensus         2 ~L~~L~l~~n~l-------~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~   58 (61)
T PF13855_consen    2 NLESLDLSNNKL-------TEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSN   58 (61)
T ss_dssp             TESEEEETSSTE-------SEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETS
T ss_pred             cCcEEECCCCCC-------CccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcC
Confidence            577888864311       12232 2346899999999963   33455688999999999975

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.56  E-value=0.022  Score=55.67  Aligned_cols=66  Identities=23%  Similarity=0.246  Sum_probs=44.5

Q ss_pred             cccccCcccEEEEeecccccc--ccccccCCceeEEEEEe-ccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979          281 RFQEFRNLMNLQLESSSLSSL--INTFPFGKTIKKLKVEL-LKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP  349 (452)
Q Consensus       281 ~l~~~~~L~~L~l~~~~~~~~--~~l~~~~p~lkkL~L~~-~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~  349 (452)
                      .+..|.+|+||+|.-..+..+  +..+...|+|+.|.|.- ||....+.-+.   ..+|+-+|||++|+=.+
T Consensus        58 pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR---~~VLR~LPnLkKLDnv~  126 (388)
T KOG2123|consen   58 PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYR---RKVLRVLPNLKKLDNVP  126 (388)
T ss_pred             hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcccccchhHH---HHHHHHcccchhccCcc
Confidence            455799999999975444433  34457899999999864 34222111111   37899999999999544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=89.45  E-value=0.17  Score=35.41  Aligned_cols=34  Identities=26%  Similarity=0.415  Sum_probs=19.6

Q ss_pred             CCcEEEeeceee-cCCC-CCCCCCCceeeeeeEeec
Q 012979          158 SLVELEVKNAWL-SVDN-LNQMPMLTKLTLEFIRLE  191 (452)
Q Consensus       158 ~L~~L~L~~~~~-d~~~-l~~fp~Lr~L~L~~v~i~  191 (452)
                      +|++|+|.+.-+ +.++ +..||+|++|+|.+-.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            566677765322 3344 667777777777665554

...

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=89.14  E-value=2.6  Score=47.71  Aligned_cols=20  Identities=5%  Similarity=-0.032  Sum_probs=13.1

Q ss_pred             hHHhhcCCCccEEEEccCch
Q 012979          333 GVLFDVFPNLSSLTLGPRAW  352 (452)
Q Consensus       333 ~~lL~~~PnL~~L~I~~~~~  352 (452)
                      |.-+..+++|+.|++.++.+
T Consensus       438 P~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        438 PESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             ChHHhhccCCCeEECCCCCC
Confidence            44455677888888776544

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=88.71  E-value=0.023  Score=61.04  Aligned_cols=56  Identities=21%  Similarity=0.223  Sum_probs=28.1

Q ss_pred             cccCCCCcEEEeeceeecC-C--CCCCCCCCceeeeeeEeec--chhHHHHhccCCcCCeEEEec
Q 012979          153 SSCCKSLVELEVKNAWLSV-D--NLNQMPMLTKLTLEFIRLE--DEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       153 ~~~c~~L~~L~L~~~~~d~-~--~l~~fp~Lr~L~L~~v~i~--~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      +...+++-+|.|++..+++ |  -+.++.-|-+|+|+.-+++  +.-+..    +.+|++|.|.+
T Consensus       122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RR----L~~LqtL~Ls~  182 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRR----LSMLQTLKLSN  182 (1255)
T ss_pred             hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHH----HhhhhhhhcCC
Confidence            4455666666666544432 1  1234444555666554443  333333    44566666643

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=88.45  E-value=1  Score=50.77  Aligned_cols=88  Identities=20%  Similarity=0.137  Sum_probs=40.1

Q ss_pred             CCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeeecCC
Q 012979          158 SLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNA  236 (452)
Q Consensus       158 ~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~  236 (452)
                      +|+.|+|.+..+ ..|.  ..|+|++|+|.+-.++.  +..   ..+.|++|.|.++.-...+. ...+|+.+.+.....
T Consensus       223 ~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N~L  294 (788)
T PRK15387        223 HITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTS--LPV---LPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGNQL  294 (788)
T ss_pred             CCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCc--ccC---cccccceeeccCCchhhhhh-chhhcCEEECcCCcc
Confidence            567777765222 1221  24677777776654442  111   14567777765432111111 123455443221111


Q ss_pred             cceEEecCCceeEEEeee
Q 012979          237 PLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       237 ~~~l~~~aP~Le~L~l~~  254 (452)
                       ..+-...|+|++|++..
T Consensus       295 -t~LP~~p~~L~~LdLS~  311 (788)
T PRK15387        295 -TSLPVLPPGLQELSVSD  311 (788)
T ss_pred             -ccccccccccceeECCC
Confidence             11222346777777754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=87.06  E-value=0.3  Score=55.89  Aligned_cols=76  Identities=21%  Similarity=0.216  Sum_probs=54.1

Q ss_pred             cCCCCcEEEeecee-e-c-CCCCCCCCCCceeeeeeEeec--chhHHHHhccCCcCCeEEEeccccccc-Cc--cccccc
Q 012979          155 CCKSLVELEVKNAW-L-S-VDNLNQMPMLTKLTLEFIRLE--DEDLDKVNDCFPCLQVLNLVGVGGFRQ-PK--IHLLHL  226 (452)
Q Consensus       155 ~c~~L~~L~L~~~~-~-d-~~~l~~fp~Lr~L~L~~v~i~--~~~L~~ll~~cP~Le~L~L~~~~g~~~-~~--l~~~sL  226 (452)
                      ..+.|++|+|.++. + . |..++.+-|||+|+|+++.|.  |..|.+    +..|.+|++........ +.  ..+++|
T Consensus       569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~----Lk~L~~Lnl~~~~~l~~~~~i~~~L~~L  644 (889)
T KOG4658|consen  569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGN----LKKLIYLNLEVTGRLESIPGILLELQSL  644 (889)
T ss_pred             hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHH----HHhhheeccccccccccccchhhhcccc
Confidence            36889999999632 1 2 335788999999999999987  788877    56899999965432211 22  337899


Q ss_pred             cEEEeeec
Q 012979          227 KSCLWTVS  234 (452)
Q Consensus       227 r~l~l~~s  234 (452)
                      |++.+..+
T Consensus       645 r~L~l~~s  652 (889)
T KOG4658|consen  645 RVLRLPRS  652 (889)
T ss_pred             cEEEeecc
Confidence            99876655

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=85.03  E-value=0.88  Score=45.32  Aligned_cols=43  Identities=19%  Similarity=0.330  Sum_probs=33.8

Q ss_pred             CCCcHHHHHHHHhcC----CChhHHHHHHHHhHHHHHhhcc---Ccceee
Q 012979            3 EHLPQPLILEILSRL----TDSADLARCRVVSKTLNSLCKE---VRSINL   45 (452)
Q Consensus         3 s~LPd~lL~~ILS~L----~~~kD~arts~lSkrWr~l~~~---~~sl~l   45 (452)
                      +.||||||..|+...    -|.++..++|++||.|+-..++   ||+..+
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~  157 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACL  157 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHH
Confidence            679999999988632    2679999999999999988754   454444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=84.47  E-value=2  Score=40.44  Aligned_cols=77  Identities=29%  Similarity=0.374  Sum_probs=51.8

Q ss_pred             CCCcEEEeec-eeecCCCCCCCCCCceeeeeeEeec--chhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979          157 KSLVELEVKN-AWLSVDNLNQMPMLTKLTLEFIRLE--DEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV  233 (452)
Q Consensus       157 ~~L~~L~L~~-~~~d~~~l~~fp~Lr~L~L~~v~i~--~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~  233 (452)
                      .....++|.+ -..+.+.+..++.|.+|.|.+-+|+  +..|..+   .|+|.+|.|.+..-++-               
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~---~p~l~~L~LtnNsi~~l---------------  103 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTF---LPNLKTLILTNNSIQEL---------------  103 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhh---ccccceEEecCcchhhh---------------
Confidence            3566677775 2334456778899999999988886  4666665   89999999976421111               


Q ss_pred             cCCcceEEecCCceeEEEee
Q 012979          234 SNAPLSLAIYAPNLVKLELR  253 (452)
Q Consensus       234 s~~~~~l~~~aP~Le~L~l~  253 (452)
                      .+. ..++ .+|.|++|.+-
T Consensus       104 ~dl-~pLa-~~p~L~~Ltll  121 (233)
T KOG1644|consen  104 GDL-DPLA-SCPKLEYLTLL  121 (233)
T ss_pred             hhc-chhc-cCCccceeeec
Confidence            111 1244 78999999873

>PLN03150 hypothetical protein; Provisional

Probab=82.18  E-value=1.2  Score=49.17  Aligned_cols=54  Identities=17%  Similarity=0.226  Sum_probs=28.8

Q ss_pred             CcEEEeeceeec---CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          159 LVELEVKNAWLS---VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       159 L~~L~L~~~~~d---~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ++.|+|.+..+.   ++.+..+++|++|+|.+-.+.+ .+..-+..++.|+.|+|.++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g-~iP~~~~~l~~L~~LdLs~N  476 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG-NIPPSLGSITSLEVLDLSYN  476 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccC-cCChHHhCCCCCCEEECCCC
Confidence            556666652221   2335566777777776554432 12222345677777777544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	452
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	3e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 80/458 (17%), Positives = 153/458 (33%), Gaps = 125/458 (27%)

Query: 9   LILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVT 68
            +LE+L +L           +     S      +I L     +    RL +         
Sbjct: 197 TVLEMLQKL--------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS-------K 241

Query: 69  PFKS---ILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWV 125
           P+++   +L N V+N++   + ++   K L+   +    D       T +    + +   
Sbjct: 242 PYENCLLVLLN-VQNAKAWNAFNLSC-KILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299

Query: 126 CEELK--FLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNA------WLSVDNLNQM 177
            +E+K   L   DC  Q      EVL   +    S++   +++       W  V N +++
Sbjct: 300 PDEVKSLLLKYLDCRPQDL--PREVLT-TNPRRLSIIAESIRDGLATWDNWKHV-NCDKL 355

Query: 178 PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKI--HLLHLKSCLWTVSN 235
             + + +L    LE  +  K    F  L V             I   LL   S +W    
Sbjct: 356 TTIIESSLNV--LEPAEYRK---MFDRLSVFP-PSA------HIPTILL---SLIWF--- 397

Query: 236 APLSLAIYAPNLVKLELR-----CVKPKSLVLQTPL-----LHDFCLSLEVANEIRFQEF 285
                     +++K ++        K  SLV + P      +    L L+V  E  +   
Sbjct: 398 ----------DVIKSDVMVVVNKLHK-YSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 286 RNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEP------IG--MKNLNLGVLFD 337
           R             S+++ +   K       +L+ P         IG  +KN+       
Sbjct: 447 R-------------SIVDHYNIPK--TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMT 491

Query: 338 VFPNL--------SSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIAR------LVVD 383
           +F  +          +     AW+A  S  +        ++K  K  I         +V+
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILN-----TLQQLKFYKPYICDNDPKYERLVN 546

Query: 384 DISVTRSFIFAI-MNI----CSNLSDMALLIHREEDSI 416
            I     F+  I  N+     ++L  +AL+   E+++I
Sbjct: 547 AI---LDFLPKIEENLICSKYTDLLRIALM--AEDEAI 579

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 5e-04
 Identities = 61/373 (16%), Positives = 107/373 (28%), Gaps = 110/373 (29%)

Query: 99  SYDD-----AEDESDDLYLTDVE-FVKNWLPWVCEELKFLSISD---------CWFQSCW 143
            Y D      +   D+    DV+   K+ L    EE+  + +S           W     
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWTLLSK 74

Query: 144 RKSEVLAFISSCCKSLVELEVKNAWL--SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDC 201
           ++  V  F+         L +   +L   +    + P +   T  +I   D  L   N  
Sbjct: 75  QEEMVQKFVEEV------LRINYKFLMSPIKTEQRQPSMM--TRMYIEQRDR-LYNDNQV 125

Query: 202 FPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLV 261
           F    V         R        L+  L                   LELR   P   V
Sbjct: 126 FAKYNV--------SRLQPYL--KLRQAL-------------------LELR---PAKNV 153

Query: 262 LQTPLLHDF------CLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLK 315
           L    +          ++L+V    + Q                       F   I  L 
Sbjct: 154 L----IDGVLGSGKTWVALDVCLSYKVQCK-------------------MDFK--IFWLN 188

Query: 316 V-ELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLK 374
           +     P   + M    L    D  PN +S +      S ++      + E+R  +K   
Sbjct: 189 LKNCNSPETVLEMLQ-KLLYQID--PNWTSRSDHS---SNIKLRIHSIQAELRRLLKSKP 242

Query: 375 EIIARLVVDDISVTRSFIFAIMNI-CSNLSDMALLIHREEDSITASNLISSCTVDHPRV- 432
                LV+ ++   +   +   N+ C       LL  R +  +T  + +S+ T  H  + 
Sbjct: 243 YENCLLVLLNVQNAK--AWNAFNLSCK-----ILLTTRFK-QVT--DFLSAATTTHISLD 292

Query: 433 RWRWGMWKEGTED 445
                +  +  + 
Sbjct: 293 HHSMTLTPDEVKS 305

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 48/315 (15%), Positives = 89/315 (28%), Gaps = 63/315 (20%)

Query: 1   MEEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVR-SINLVCTLSRYVQSRLPQ 59
           +    P+ ++  + S +    D     +V K+   + +  R  + +              
Sbjct: 5   IALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGN------------ 52

Query: 60  QVTAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVK 119
                     +      ++R    + SV       L G  +    +   D +   V    
Sbjct: 53  ---------CYAVSPATVIRRFPKVRSV------ELKGKPHFADFNLVPDGWGGYVYPWI 97

Query: 120 NWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKN-AWLSVDNLNQM- 177
             +      L+ + +            + L  I+   K+   L + +    S D L  + 
Sbjct: 98  EAMSSSYTWLEEIRLKRMVV-----TDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIA 152

Query: 178 ---PMLTKLTLE---FIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLW 231
                L +L L       +    L    D +  L  LN+                     
Sbjct: 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISC----------------LAS 196

Query: 232 TVSNAPL-SLAIYAPNLVKLEL-RCVKP---KSLVLQTPLLHDFCLSLEVANEIRFQEFR 286
            VS + L  L    PNL  L+L R V      +L+ + P L +         E+R   + 
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGG-YTAEVRPDVYS 255

Query: 287 NLMNLQLESSSLSSL 301
            L         L  L
Sbjct: 256 GLSVALSGCKELRCL 270

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 39/318 (12%), Positives = 91/318 (28%), Gaps = 70/318 (22%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSL-CKEVRSINLVCTLSRYVQSRLPQQV 61
                 +I ++++ +TD  D     +V +    +  +    + +    +           
Sbjct: 14  VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYT----------- 62

Query: 62  TAAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNW 121
                     +  + L R   +L S+ +                      L    +    
Sbjct: 63  ----------ATPDRLSRRFPNLRSLKLKGKPRA------------AMFNLIPENWGGYV 100

Query: 122 LPWV------CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDN-- 173
            PWV        +LK +              ++     +    L  L++        +  
Sbjct: 101 TPWVTEISNNLRQLKSVHFRRM----IVSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156

Query: 174 ---LNQMPMLTKLTLE---FIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLK 227
              +     +  L +E   F   + + L ++      L+VLN          KI    L+
Sbjct: 157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF---AKISPKDLE 213

Query: 228 SCLWTVSNAPLSLAIYAPNLVKLELRC---VKPKSLVLQTPLLHDFCLSLEVANEIRFQE 284
                      ++A    +LV +++     ++          L +FC      +    ++
Sbjct: 214 -----------TIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262

Query: 285 FRNLMNL-QLESSSLSSL 301
           + NL+   +L    LS +
Sbjct: 263 YMNLVFPRKLCRLGLSYM 280

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 46/268 (17%), Positives = 74/268 (27%), Gaps = 62/268 (23%)

Query: 3   EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVT 62
           + LP  L+L I S L    +L +   V K    L                    L Q + 
Sbjct: 10  DSLPDELLLGIFSCLCLP-ELLKVSGVCKRWYRLA---------------SDESLWQTLD 53

Query: 63  AAPRVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWL 122
              +          L +           +D+ L                           
Sbjct: 54  LTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS---------------------- 91

Query: 123 PWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS---VDNLNQMPM 179
                 ++ + +S+   +        L  I S C  L  L ++   LS   V+ L +   
Sbjct: 92  ---PFRVQHMDLSNSVIE-----VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSN 143

Query: 180 LTKLTLEF-IRLEDEDLDKVNDCFPCLQVLNL-----VGVGGFRQ------PKIHLLHLK 227
           L +L L       +  L  +      L  LNL           +         I  L+L 
Sbjct: 144 LVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203

Query: 228 SCLWTVSNAPL-SLAIYAPNLVKLELRC 254
                +  + L +L    PNLV L+L  
Sbjct: 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSD 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	452
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.71
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.6
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.66
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.65
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.5
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.48
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	98.43
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.42
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.4
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.4
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.38
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.37
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	98.36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.35
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.34
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.3
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.3
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	98.28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.28
1o6v_A	466	Internalin A; bacterial infection, extracellular r	98.28
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	98.23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	98.22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.2
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.2
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.19
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.18
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.17
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.17
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	98.15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.12
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	98.1
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.1
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	98.08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	98.04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.03
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.03
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.02
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	98.02
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.01
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	97.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	97.93
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.92
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	97.9
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	97.9
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.89
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	97.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	97.88
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.88
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.87
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	97.86
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.86
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	97.85
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	97.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	97.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	97.79
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	97.77
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	97.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.73
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	97.7
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.7
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	97.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.7
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	97.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.69
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.69
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	97.68
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	97.67
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	97.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	97.61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	97.6
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.59
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.58
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	97.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	97.55
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.51
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.43
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.41
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.39
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	97.38
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.33
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.29
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	97.28
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.27
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	97.26
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.24
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	97.18
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.15
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.14
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	97.13
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	97.12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	97.11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	97.05
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	97.03
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.96
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	96.93
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	96.89
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	96.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	96.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	96.63
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	96.56
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.53
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	96.52
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	96.48
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	96.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	96.45
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.42
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.39
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.3
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.27
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.19
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.13
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	96.08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	95.62
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	95.38
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	95.28
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	95.03
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	94.95
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.87
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	94.72
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	94.6
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.12
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	94.08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	93.81
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	93.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	93.71
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	93.47
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	92.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	92.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	92.32
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	90.36
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	90.04
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	89.86
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	89.7
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	87.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	87.01
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	86.52
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	83.91

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.71  E-value=2.5e-17  Score=175.38  Aligned_cols=361  Identities=16%  Similarity=0.119  Sum_probs=194.0

Q ss_pred             CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhccCcceeeeecchhhhhccCCccccCCCCCCcHHHHHHHHHhcCC
Q 012979            3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKEVRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRNSR   82 (452)
Q Consensus         3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~~~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~   82 (452)
                      +.||||++.+|+++|++++|+++|++|||||++++...+ ..+....                   .+.....+++.+.+
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~-~~l~~~~-------------------~~~~~~~~~~~~~~   73 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETR-EHVTMAL-------------------CYTATPDRLSRRFP   73 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHC-CEEEESC-------------------GGGSCHHHHHHHCT
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccc-cEEEEee-------------------ccccChHHHHHhCC
Confidence            479999999999999559999999999999999964332 1121110                   11123455677888


Q ss_pred             CceEEEEeeecCcccccccccccccccccCCChhhhhhcch---hhcCCceEEEeeecccccccccccccceecccCCC-
Q 012979           83 HLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLP---WVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKS-  158 (452)
Q Consensus        83 ~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~---~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~-  158 (452)
                      .+++|+++.++...+....     ..++    .++...|+.   ...+.|++|+|++...     ....+..+...|+. 
T Consensus        74 ~L~~L~L~~~~~~~~~~~~-----~~~~----~~~~~~~l~~l~~~~~~L~~L~L~~~~i-----~~~~~~~l~~~~~~~  139 (592)
T 3ogk_B           74 NLRSLKLKGKPRAAMFNLI-----PENW----GGYVTPWVTEISNNLRQLKSVHFRRMIV-----SDLDLDRLAKARADD  139 (592)
T ss_dssp             TCSEEEEECSCGGGGGTCS-----CTTS----CCBCHHHHHHHHHHCTTCCEEEEESCBC-----CHHHHHHHHHHHGGG
T ss_pred             CCeEEEecCCcchhhcccc-----cccc----cccchHHHHHHHhhCCCCCeEEeeccEe-----cHHHHHHHHHhcccc
Confidence            8999999854432211000     0000    112234542   2457788888863311     11122223323444 


Q ss_pred             CcEEEeecee-ecCCCC----CCCCCCceeeeeeEeecchh---HHHHhccCCcCCeEEEeccccc--ccCc-----ccc
Q 012979          159 LVELEVKNAW-LSVDNL----NQMPMLTKLTLEFIRLEDED---LDKVNDCFPCLQVLNLVGVGGF--RQPK-----IHL  223 (452)
Q Consensus       159 L~~L~L~~~~-~d~~~l----~~fp~Lr~L~L~~v~i~~~~---L~~ll~~cP~Le~L~L~~~~g~--~~~~-----l~~  223 (452)
                      |++|+|.++. +...++    ..+|+|++|+|.+..+.+..   +..+...+|.|++|+|.++...  ....     -.+
T Consensus       140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~  219 (592)
T 3ogk_B          140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC  219 (592)
T ss_dssp             CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred             CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence            7777777632 221122    25677777777766665443   5566677777777777543211  0001     124


Q ss_pred             ccccEEEeeec---CCcceEEecCCceeEEEeeeecCC-------ceeeeCCccceEEEeeccc--ccccccccCcccEE
Q 012979          224 LHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCVKPK-------SLVLQTPLLHDFCLSLEVA--NEIRFQEFRNLMNL  291 (452)
Q Consensus       224 ~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~~~~-------~l~i~~p~L~~~~l~i~~~--~~~~l~~~~~L~~L  291 (452)
                      ++|+.+.+.-.   +.. ......|+|+.|.+......       ......+.|+.+++.-...  -...+..+++|++|
T Consensus       220 ~~L~~L~L~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L  298 (592)
T 3ogk_B          220 RSLVSVKVGDFEILELV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKL  298 (592)
T ss_dssp             TTCCEEECSSCBGGGGH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEE
T ss_pred             CCCcEEeccCccHHHHH-HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEE
Confidence            56666644321   111 12235677777777532110       0011223444444321000  11134567899999


Q ss_pred             EEeecccc--ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEc-cCchhhhh---hccccCccc
Q 012979          292 QLESSSLS--SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLG-PRAWSAVQ---SNFDKGRLE  365 (452)
Q Consensus       292 ~l~~~~~~--~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~-~~~~~~~~---~~~~~~~~~  365 (452)
                      +++...+.  .+..++..++++++|.+. .. ..+     ..++.+++.+|+|++|+|. +..-..++   ..+...++.
T Consensus       299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~-~~~-----~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          299 DLLYALLETEDHCTLIQKCPNLEVLETR-NV-IGD-----RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             EETTCCCCHHHHHHHHTTCTTCCEEEEE-GG-GHH-----HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             ecCCCcCCHHHHHHHHHhCcCCCEEecc-Cc-cCH-----HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            99864432  223445779999999876 21 111     1245788899999999997 21000000   000000000


Q ss_pred             c-ccccccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEe
Q 012979          366 I-RTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLI  409 (452)
Q Consensus       366 ~-~~~~~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~  409 (452)
                      . ....+.|+++.+..    ..-+-+.++.+..+++.|+.+.+..
T Consensus       372 ~l~~~~~~L~~L~l~~----~~l~~~~~~~l~~~~~~L~~L~l~~  412 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYV----SDITNESLESIGTYLKNLCDFRLVL  412 (592)
T ss_dssp             HHHHHCTTCSEEEEEE----SCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred             HHHhhCccCeEEEeec----CCccHHHHHHHHhhCCCCcEEEEee
Confidence            0 01236788887732    1334456677778899999999974

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.69  E-value=1.5e-17  Score=176.93  Aligned_cols=361  Identities=16%  Similarity=0.150  Sum_probs=179.7

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc-CcceeeeecchhhhhccCCccccCCCCCCcHHHHHHHHHhc
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE-VRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLVRN   80 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~-~~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~   80 (452)
                      ++.||||++.+|+++|++++|+++|+.|||||+++... ++.+.+.  ...      .         .    ...+++.+
T Consensus         6 ~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~--~~~------~---------~----~~~~~~~~   64 (594)
T 2p1m_B            6 ALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIG--NCY------A---------V----SPATVIRR   64 (594)
T ss_dssp             ----CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEES--STT------S---------S----CHHHHHHH
T ss_pred             hhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeec--ccc------c---------c----CHHHHHhh
Confidence            67899999999999997699999999999999998432 2333331  110      0         0    12245667


Q ss_pred             CCCceEEEEeeecCcccccccccccccccccCCChhhhhhcc---hhhcCCceEEEeeecccccccccccccceecccCC
Q 012979           81 SRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWL---PWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCK  157 (452)
Q Consensus        81 ~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL---~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~  157 (452)
                      .+.+++|.+..++...+-...     ..+ |   .+.+..|+   ....+.|++|+|+....     ....+..+...|+
T Consensus        65 ~~~L~~L~L~~~~~~~~~~l~-----~~~-~---~~~~~~~l~~l~~~~~~L~~L~L~~~~~-----~~~~~~~l~~~~~  130 (594)
T 2p1m_B           65 FPKVRSVELKGKPHFADFNLV-----PDG-W---GGYVYPWIEAMSSSYTWLEEIRLKRMVV-----TDDCLELIAKSFK  130 (594)
T ss_dssp             CTTCCEEEEECSCGGGGGTCS-----CTT-S---CCBCHHHHHHHHHHCTTCCEEEEESCBC-----CHHHHHHHHHHCT
T ss_pred             CCCceEEeccCCCchhhcccc-----ccc-c---cchhhHHHHHHHHhCCCCCeEEeeCcEE-----cHHHHHHHHHhCC
Confidence            788888888854322211100     000 0   01223454   22356777877763211     1122333333567


Q ss_pred             CCcEEEeece-eecC---CCC-CCCCCCceeeeeeEeecc---hhHHHHhccCCcCCeEEEecccc-cccCc-----ccc
Q 012979          158 SLVELEVKNA-WLSV---DNL-NQMPMLTKLTLEFIRLED---EDLDKVNDCFPCLQVLNLVGVGG-FRQPK-----IHL  223 (452)
Q Consensus       158 ~L~~L~L~~~-~~d~---~~l-~~fp~Lr~L~L~~v~i~~---~~L~~ll~~cP~Le~L~L~~~~g-~~~~~-----l~~  223 (452)
                      +|++|+|.++ .+..   +.+ ..+|+|++|+|.+..+++   ..+..+...||+|++|+|.++.+ .....     -.+
T Consensus       131 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~  210 (594)
T 2p1m_B          131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRC  210 (594)
T ss_dssp             TCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHC
T ss_pred             CCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhC
Confidence            7777777754 3321   112 256777777776555543   23455555667777777755431 10000     123


Q ss_pred             ccccEEEeeecCC---cceEEecCCceeEEEeeeecCC-------c---eeeeCCccceEEEeecccc--cc--cccccC
Q 012979          224 LHLKSCLWTVSNA---PLSLAIYAPNLVKLELRCVKPK-------S---LVLQTPLLHDFCLSLEVAN--EI--RFQEFR  286 (452)
Q Consensus       224 ~sLr~l~l~~s~~---~~~l~~~aP~Le~L~l~~~~~~-------~---l~i~~p~L~~~~l~i~~~~--~~--~l~~~~  286 (452)
                      ++|+++.+.-...   ...+...+|+|+.|.+......       .   ..-+.+.|+.+. .+.+..  .+  .+.+++
T Consensus       211 ~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls-~~~~~~~~~l~~~~~~~~  289 (594)
T 2p1m_B          211 PNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLS-GFWDAVPAYLPAVYSVCS  289 (594)
T ss_dssp             TTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEE-CCBTCCGGGGGGGHHHHT
T ss_pred             CCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccccc-CCcccchhhHHHHHHhhC
Confidence            5566654321100   0112225567777764321100       0   000112233321 011100  01  122577


Q ss_pred             cccEEEEeecccc--ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh-hh-hhccccC
Q 012979          287 NLMNLQLESSSLS--SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS-AV-QSNFDKG  362 (452)
Q Consensus       287 ~L~~L~l~~~~~~--~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~-~~-~~~~~~~  362 (452)
                      +|++|+++...+.  .+..++..++++++|.+.-.  ..+     ..+..+.+.+|+|++|+|....-. .. ...+...
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~-----~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~  362 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IED-----AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQ  362 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHH-----HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCH-----HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHH
Confidence            8889998754432  12334567889999887522  111     123577788999999998331000 00 0000000


Q ss_pred             cccc-ccccccceeEEEEEeecCCcchhHHHHHHHhcccccccEEEEe
Q 012979          363 RLEI-RTEMKVLKEIIARLVVDDISVTRSFIFAIMNICSNLSDMALLI  409 (452)
Q Consensus       363 ~~~~-~~~~~~lk~lv~~~~~~~~~~~~~fl~~ll~~a~~L~~m~i~~  409 (452)
                      ++.. ....+.|+++.+...    .-+-..+..+..+++.|+.+.+.+
T Consensus       363 ~l~~l~~~~~~L~~L~~~~~----~l~~~~~~~l~~~~~~L~~L~L~~  406 (594)
T 2p1m_B          363 GLVSVSMGCPKLESVLYFCR----QMTNAALITIARNRPNMTRFRLCI  406 (594)
T ss_dssp             HHHHHHHHCTTCCEEEEEES----CCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred             HHHHHHHhchhHHHHHHhcC----CcCHHHHHHHHhhCCCcceeEeec
Confidence            0000 001267888844321    333455667778889999999984

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.60  E-value=1.1e-16  Score=158.42  Aligned_cols=163  Identities=21%  Similarity=0.237  Sum_probs=110.4

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc---CcceeeeecchhhhhccCCccccCCCCCCcHHHHHHHHH
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE---VRSINLVCTLSRYVQSRLPQQVTAAPRVTPFKSILENLV   78 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~---~~sl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l   78 (452)
                      ++.||||++.+|+++|+ .+|+++++.|||+|+.+..+   ++.+++.  ...               ..  ...+.+++
T Consensus         9 ~~~LP~eil~~If~~L~-~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~--~~~---------------~~--~~~~~~~~   68 (336)
T 2ast_B            9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLASDESLWQTLDLT--GKN---------------LH--PDVTGRLL   68 (336)
T ss_dssp             SSSSCHHHHHHHHTTSC-HHHHHHTTSSCHHHHHHHTCSTTSSEEECT--TCB---------------CC--HHHHHHHH
T ss_pred             hhhCCHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHhcCchhheeeccc--ccc---------------CC--HHHHHhhh
Confidence            58899999999999995 99999999999999999743   4444432  110               01  12333333


Q ss_pred             hcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceecccCCC
Q 012979           79 RNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKS  158 (452)
Q Consensus        79 ~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~  158 (452)
                      .  +.++.+++...      .+       .+.   .+.      ......|++|++++...     ....++.....|++
T Consensus        69 ~--~~l~~L~l~~n------~l-------~~~---~~~------~~~~~~L~~L~L~~~~l-----~~~~~~~~~~~~~~  119 (336)
T 2ast_B           69 S--QGVIAFRCPRS------FM-------DQP---LAE------HFSPFRVQHMDLSNSVI-----EVSTLHGILSQCSK  119 (336)
T ss_dssp             H--TTCSEEECTTC------EE-------CSC---CCS------CCCCBCCCEEECTTCEE-----CHHHHHHHHTTBCC
T ss_pred             h--ccceEEEcCCc------cc-------ccc---chh------hccCCCCCEEEccCCCc-----CHHHHHHHHhhCCC
Confidence            2  56777776621      11       000   000      11357889999974321     11225555667899


Q ss_pred             CcEEEeeceeec---CCCCCCCCCCceeeeeeE-eecchhHHHHhccCCcCCeEEEecc
Q 012979          159 LVELEVKNAWLS---VDNLNQMPMLTKLTLEFI-RLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       159 L~~L~L~~~~~d---~~~l~~fp~Lr~L~L~~v-~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      |++|+|.++.+.   +..+..+++|++|+|.+. .+++..+..++..||+|++|+|.+|
T Consensus       120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             CSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             CCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            999999985442   224677999999999887 6788888888899999999999776

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.83  E-value=2e-08  Score=106.46  Aligned_cols=118  Identities=19%  Similarity=0.300  Sum_probs=79.6

Q ss_pred             HHHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccce
Q 012979           72 SILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAF  151 (452)
Q Consensus        72 ~~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~  151 (452)
                      ..+..+..+.+.+++|+++.+      .+            + ...+ .-+....+.|++|++.++..   . ....++.
T Consensus        95 ~~l~~l~~~~~~L~~L~L~~~------~~------------~-~~~~-~~l~~~~~~L~~L~L~~~~~---~-~~~~l~~  150 (594)
T 2p1m_B           95 PWIEAMSSSYTWLEEIRLKRM------VV------------T-DDCL-ELIAKSFKNFKVLVLSSCEG---F-STDGLAA  150 (594)
T ss_dssp             HHHHHHHHHCTTCCEEEEESC------BC------------C-HHHH-HHHHHHCTTCCEEEEESCEE---E-EHHHHHH
T ss_pred             HHHHHHHHhCCCCCeEEeeCc------EE------------c-HHHH-HHHHHhCCCCcEEeCCCcCC---C-CHHHHHH
Confidence            345566667899999999832      11            1 1111 11222467999999975421   1 1223555


Q ss_pred             ecccCCCCcEEEeeceeecC-C--CC----CCCCCCceeeeeeEe--ecchhHHHHhccCCcCCeEEEecc
Q 012979          152 ISSCCKSLVELEVKNAWLSV-D--NL----NQMPMLTKLTLEFIR--LEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       152 ~~~~c~~L~~L~L~~~~~d~-~--~l----~~fp~Lr~L~L~~v~--i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      +..+|++|++|+|.++.+.. .  .+    ..+++|++|+|.+..  +++..+..+...||+|++|.|.+|
T Consensus       151 ~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          151 IAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             HHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             HHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            66679999999999754421 1  12    367899999998875  677889888888999999999766

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.80  E-value=1.7e-08  Score=107.04  Aligned_cols=309  Identities=15%  Similarity=0.154  Sum_probs=178.7

Q ss_pred             HHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchh-hcCCceEEEeeecccccccccccccce
Q 012979           73 ILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPW-VCEELKFLSISDCWFQSCWRKSEVLAF  151 (452)
Q Consensus        73 ~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~-~~~~L~eL~l~~~~~~~~~~~~~~L~~  151 (452)
                      .+..+....+.++.|+|+.+      .+            + .. ...|+.. ..+.|++|+|.++..   . ....++.
T Consensus       103 ~l~~l~~~~~~L~~L~L~~~------~i------------~-~~-~~~~l~~~~~~~L~~L~L~~~~~---~-~~~~l~~  158 (592)
T 3ogk_B          103 WVTEISNNLRQLKSVHFRRM------IV------------S-DL-DLDRLAKARADDLETLKLDKCSG---F-TTDGLLS  158 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEESC------BC------------C-HH-HHHHHHHHHGGGCCEEEEESCEE---E-EHHHHHH
T ss_pred             HHHHHHhhCCCCCeEEeecc------Ee------------c-HH-HHHHHHHhccccCcEEECcCCCC---c-CHHHHHH
Confidence            45556667899999999832      11            1 11 1245533 334599999975421   1 1234555


Q ss_pred             ecccCCCCcEEEeeceeecCCC-------CCCCCCCceeeeeeEeec---chhHHHHhccCCcCCeEEEecccccccCc-
Q 012979          152 ISSCCKSLVELEVKNAWLSVDN-------LNQMPMLTKLTLEFIRLE---DEDLDKVNDCFPCLQVLNLVGVGGFRQPK-  220 (452)
Q Consensus       152 ~~~~c~~L~~L~L~~~~~d~~~-------l~~fp~Lr~L~L~~v~i~---~~~L~~ll~~cP~Le~L~L~~~~g~~~~~-  220 (452)
                      +..+|++|++|+|.++.+...+       ...+|+|++|+|.+..++   +..+..++..||+|++|.|.+|.-...+. 
T Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~  238 (592)
T 3ogk_B          159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF  238 (592)
T ss_dssp             HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH
T ss_pred             HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH
Confidence            6668999999999986442221       247899999999887775   67889999999999999998753222111 


Q ss_pred             -cccccccEEEeeec-C-----CcceEEecCCceeEEEeeeecCCc---eeeeCCccceEEEeecccc--c--ccccccC
Q 012979          221 -IHLLHLKSCLWTVS-N-----APLSLAIYAPNLVKLELRCVKPKS---LVLQTPLLHDFCLSLEVAN--E--IRFQEFR  286 (452)
Q Consensus       221 -l~~~sLr~l~l~~s-~-----~~~~l~~~aP~Le~L~l~~~~~~~---l~i~~p~L~~~~l~i~~~~--~--~~l~~~~  286 (452)
                       -.+++|+.+.+... .     .........++|++|.++......   ..-..+.|+++.+.-....  .  ..+.+++
T Consensus       239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~  318 (592)
T 3ogk_B          239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCP  318 (592)
T ss_dssp             HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCT
T ss_pred             HhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCc
Confidence             33678888866421 1     011122366889998886432111   1112445666554321111  0  1246789


Q ss_pred             cccEEEEeecccc-ccccccccCCceeEEEEEec----cCCCCcccc-ccChhHHhhcCCCccEEEEccCchhhhhhccc
Q 012979          287 NLMNLQLESSSLS-SLINTFPFGKTIKKLKVELL----KPGEPIGMK-NLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFD  360 (452)
Q Consensus       287 ~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~~~----~~~~~~~~l-~~dl~~lL~~~PnL~~L~I~~~~~~~~~~~~~  360 (452)
                      +|++|++...... .+..+...++++++|.+.-.    ...++...+ ...+..+...+|+|++|++.......  ..+.
T Consensus       319 ~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~--~~~~  396 (592)
T 3ogk_B          319 NLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN--ESLE  396 (592)
T ss_dssp             TCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH--HHHH
T ss_pred             CCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH--HHHH
Confidence            9999999832211 22334467899999987620    000000000 11245778889999999994321110  0000


Q ss_pred             cCccccccccccceeEEEEEee-cCCcch---hHHHHHHHhcccccccEEEEecc
Q 012979          361 KGRLEIRTEMKVLKEIIARLVV-DDISVT---RSFIFAIMNICSNLSDMALLIHR  411 (452)
Q Consensus       361 ~~~~~~~~~~~~lk~lv~~~~~-~~~~~~---~~fl~~ll~~a~~L~~m~i~~~~  411 (452)
                      ...    ...+.|+++.+.... .+.-..   -+-+..++..++.|+.+.+..+.
T Consensus       397 ~l~----~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~  447 (592)
T 3ogk_B          397 SIG----TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ  447 (592)
T ss_dssp             HHH----HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG
T ss_pred             HHH----hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC
Confidence            000    013567777765221 110111   13466778889999999997644

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.66  E-value=2.4e-07  Score=91.52  Aligned_cols=204  Identities=15%  Similarity=0.143  Sum_probs=118.9

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.|++|++.+..-       ..++. ...+++|++|+|++..+ +.+.+..+++|++|+|.+..+.+-.  . +..+|.
T Consensus        65 ~~~L~~L~l~~n~i-------~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~~--~-~~~l~~  133 (347)
T 4fmz_A           65 LTNLEYLNLNGNQI-------TDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDIS--P-LANLTK  133 (347)
T ss_dssp             CTTCCEEECCSSCC-------CCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCCG--G-GTTCTT
T ss_pred             cCCccEEEccCCcc-------ccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCch--h-hccCCc
Confidence            57899999974321       11222 44688999999997433 4556888999999999887776422  2 677999


Q ss_pred             CCeEEEecccccccCc--cccccccEEEeeecCCcc-eEEecCCceeEEEeeeecCCce--eeeCCccceEEEeeccccc
Q 012979          205 LQVLNLVGVGGFRQPK--IHLLHLKSCLWTVSNAPL-SLAIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLSLEVANE  279 (452)
Q Consensus       205 Le~L~L~~~~g~~~~~--l~~~sLr~l~l~~s~~~~-~l~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~i~~~~~  279 (452)
                      |++|++.++.......  -.+++|+++.+.-..... ......|+|+.|++........  .-..+.|+.+.+.-.....
T Consensus       134 L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~  213 (347)
T 4fmz_A          134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITD  213 (347)
T ss_dssp             CCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             eeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCC
Confidence            9999997764332222  336688887554222111 0123678888888854322111  1123344444432211111


Q ss_pred             c-cccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          280 I-RFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       280 ~-~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      . .+.++++|++|++++..+..+.. +..+++++.|.+.-.. ..+       + ..+..+|+|++|++...
T Consensus       214 ~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~-------~-~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          214 ITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ-ISD-------I-NAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCC-------C-GGGTTCTTCCEEECCSS
T ss_pred             CchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc-cCC-------C-hhHhcCCCcCEEEccCC
Confidence            1 25567788888887654443222 5567788887753221 111       1 33567778888887553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.65  E-value=1.7e-07  Score=92.87  Aligned_cols=189  Identities=19%  Similarity=0.167  Sum_probs=108.9

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..++++|++.+..-       ..+|.....+++|++|+|.+..+ .. ..+..+++|++|+|.+-.+.  .+..-+..++
T Consensus        80 ~~~l~~L~L~~n~l-------~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~  150 (328)
T 4fcg_A           80 QPGRVALELRSVPL-------PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLN  150 (328)
T ss_dssp             STTCCEEEEESSCC-------SSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCT
T ss_pred             ccceeEEEccCCCc-------hhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCc
Confidence            47899999975422       13455455689999999997433 33 35788999999999988776  3333467799


Q ss_pred             cCCeEEEeccccccc-Cc-cc----------cccccEEEeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccc
Q 012979          204 CLQVLNLVGVGGFRQ-PK-IH----------LLHLKSCLWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLH  268 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~-~~-l~----------~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~  268 (452)
                      .|++|+|.+|..... +. +.          +++|+.+.+....   .+..+. ..++|+.|++.....           
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~-~l~~L~~L~L~~N~l-----------  218 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIA-NLQNLKSLKIRNSPL-----------  218 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGG-GCTTCCEEEEESSCC-----------
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhc-CCCCCCEEEccCCCC-----------
Confidence            999999987643221 11 11          4445554333211   111111 344555555432211           


Q ss_pred             eEEEeecccccccccccCcccEEEEeeccc-cccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979          269 DFCLSLEVANEIRFQEFRNLMNLQLESSSL-SSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL  347 (452)
Q Consensus       269 ~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~-~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I  347 (452)
                            ...+. .+.++++|++|+++...+ ..+...+..+++++.|.+.-.....       .++.-+..+|+|++|+|
T Consensus       219 ------~~l~~-~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-------~~p~~~~~l~~L~~L~L  284 (328)
T 4fcg_A          219 ------SALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-------TLPLDIHRLTQLEKLDL  284 (328)
T ss_dssp             ------CCCCG-GGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCC-------BCCTTGGGCTTCCEEEC
T ss_pred             ------CcCch-hhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchh-------hcchhhhcCCCCCEEeC
Confidence                  11111 355677888888875332 2223345567788887752211111       12334667788888888


Q ss_pred             cc
Q 012979          348 GP  349 (452)
Q Consensus       348 ~~  349 (452)
                      .+
T Consensus       285 ~~  286 (328)
T 4fcg_A          285 RG  286 (328)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.50  E-value=3.2e-07  Score=88.29  Aligned_cols=197  Identities=17%  Similarity=0.132  Sum_probs=105.8

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEe-ecchhHHHHhcc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIR-LEDEDLDKVNDC  201 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~-i~~~~L~~ll~~  201 (452)
                      .+.+++|++++..-.      ...+.....+++|++|+|.+..+   .+..+..+++|++|+|.+-. +..-. ...+..
T Consensus        31 ~~~l~~L~l~~n~i~------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~  103 (285)
T 1ozn_A           31 PAASQRIFLHGNRIS------HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHG  103 (285)
T ss_dssp             CTTCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTT
T ss_pred             CCCceEEEeeCCcCC------ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcC
Confidence            357888888643110      11112234678899999986322   34457788899999888764 43211 122456


Q ss_pred             CCcCCeEEEeccccccc-Cc-c-ccccccEEEeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeec
Q 012979          202 FPCLQVLNLVGVGGFRQ-PK-I-HLLHLKSCLWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLE  275 (452)
Q Consensus       202 cP~Le~L~L~~~~g~~~-~~-l-~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~  275 (452)
                      ++.|++|+|.++.-... +. + .+++|+.+.+.-..   ......-..++|++|++....                 +.
T Consensus       104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------l~  166 (285)
T 1ozn_A          104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-----------------IS  166 (285)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----------------CC
T ss_pred             CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCc-----------------cc
Confidence            88899998866431111 11 1 24556655332111   111111134566666653221                 11


Q ss_pred             ccccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979          276 VANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS  353 (452)
Q Consensus       276 ~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~  353 (452)
                      ..+.-.+.++.+|++|+++...+..+ ...+..+++++.|.+.-... .+   .   ++..+..+|+|++|++.+..|.
T Consensus       167 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~---~---~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SA---L---PTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SC---C---CHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC-Cc---C---CHHHcccCcccCEEeccCCCcc
Confidence            11222355677888888876544332 33455678888877532211 11   1   2356778888888888776443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.48  E-value=4.9e-07  Score=93.11  Aligned_cols=214  Identities=17%  Similarity=0.081  Sum_probs=116.5

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      +.++.|+|++..-.      ...+.....+++|+.|+|.+..   +.+..+..+++|++|+|.+-.+..-. ...+..+|
T Consensus        75 ~~l~~L~L~~n~i~------~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~  147 (452)
T 3zyi_A           75 SNTRYLNLMENNIQ------MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLS  147 (452)
T ss_dssp             TTCSEEECCSSCCC------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCT
T ss_pred             CCccEEECcCCcCc------eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccC
Confidence            57888888643211      1112223467888888888632   23345778888888888776655321 12245688


Q ss_pred             cCCeEEEecccccccCc---cccccccEEEeeecCCcceE----EecCCceeEEEeeeecCCce--eeeCCccceEEEee
Q 012979          204 CLQVLNLVGVGGFRQPK---IHLLHLKSCLWTVSNAPLSL----AIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLSL  274 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~~~---l~~~sLr~l~l~~s~~~~~l----~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~i  274 (452)
                      +|++|+|.++.-...+.   -.+++|+.+.+.-.+....+    ....++|++|++........  .-..+.|+.+.+.-
T Consensus       148 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          148 KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSG  227 (452)
T ss_dssp             TCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTT
T ss_pred             CCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcC
Confidence            88888886543111111   23567777644321111111    11467888888754322211  01123444443321


Q ss_pred             c---ccccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          275 E---VANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       275 ~---~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .   ..+.-.+.++.+|++|+++...+..+ ...+..+++|+.|.+.-..    ...+   ++..+..+|+|++|++.++
T Consensus       228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~---~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN----LSSL---PHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC----CSCC---CTTSSTTCTTCCEEECCSS
T ss_pred             CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc----CCcc---ChHHhccccCCCEEEccCC
Confidence            1   11222456777888888875444332 2335567888887763221    1111   2356678899999999888


Q ss_pred             chhh
Q 012979          351 AWSA  354 (452)
Q Consensus       351 ~~~~  354 (452)
                      .|.+
T Consensus       301 p~~C  304 (452)
T 3zyi_A          301 PWNC  304 (452)
T ss_dssp             CEEC
T ss_pred             CcCC
Confidence            6643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=98.43  E-value=1e-06  Score=86.87  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=17.8

Q ss_pred             ccccCcccEEEEeeccccccccccccCCceeEEEE
Q 012979          282 FQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKV  316 (452)
Q Consensus       282 l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L  316 (452)
                      +.++++|++|+++...+.. ...+..+++++.|.+
T Consensus       239 ~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l  272 (347)
T 4fmz_A          239 LANLSQLTWLEIGTNQISD-INAVKDLTKLKMLNV  272 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCC-CGGGTTCTTCCEEEC
T ss_pred             hhcCCCCCEEECCCCccCC-ChhHhcCCCcCEEEc
Confidence            4455666666666443332 233445566666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.42  E-value=6.8e-07  Score=91.72  Aligned_cols=193  Identities=17%  Similarity=0.124  Sum_probs=100.6

Q ss_pred             ccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc---ccccccc
Q 012979          154 SCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK---IHLLHLK  227 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~---l~~~sLr  227 (452)
                      ..+++|++|+|.+..+   .+..+..+++|++|+|.+-.+..-. ...+..+++|++|+|.++.-...+.   -.+++|+
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~  163 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLR  163 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCC
T ss_pred             hCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCceeeCCCCcccccCHHHhhhCcccC
Confidence            3567777777775322   2334667777777777765554211 1123557777777775542111111   2245666


Q ss_pred             EEEeeecCC----cceEEecCCceeEEEeeeecCCce--eeeCCccceEEEee---cccccccccccCcccEEEEeeccc
Q 012979          228 SCLWTVSNA----PLSLAIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLSL---EVANEIRFQEFRNLMNLQLESSSL  298 (452)
Q Consensus       228 ~l~l~~s~~----~~~l~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~i---~~~~~~~l~~~~~L~~L~l~~~~~  298 (452)
                      .+.+.-...    .....-..++|+.|++........  ....+.|+.+.+.-   ...+.-.+.++.+|++|+++...+
T Consensus       164 ~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             EEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             EeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence            664432110    000111457777777754322111  01122344433321   111122455778888888875444


Q ss_pred             ccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhh
Q 012979          299 SSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSA  354 (452)
Q Consensus       299 ~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~  354 (452)
                      ..+ ...+..+++|+.|.|.-.    ....+   ++..+..+|+|+.|++.++.|++
T Consensus       244 ~~~~~~~~~~l~~L~~L~L~~N----~l~~~---~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          244 QVIERNAFDNLQSLVEINLAHN----NLTLL---PHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             CEECTTSSTTCTTCCEEECTTS----CCCCC---CTTTTSSCTTCCEEECCSSCEEC
T ss_pred             eEEChhhhcCCCCCCEEECCCC----CCCcc---ChhHhccccCCCEEEcCCCCccC
Confidence            332 233556788888775322    11111   23567788999999999887754

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.40  E-value=2.8e-06  Score=87.68  Aligned_cols=65  Identities=20%  Similarity=0.214  Sum_probs=33.9

Q ss_pred             ccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979          282 FQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS  353 (452)
Q Consensus       282 l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~  353 (452)
                      +.++.+|++|+++...+..+ ...+..+++|+.|.+.-.    ....+   ++..+..+|+|++|++.+..|.
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N----~l~~~---~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN----QLTTL---EESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS----CCSCC---CGGGBSCGGGCCEEECCSSCEE
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC----cCcee---CHhHcCCCcccCEEEccCCCcc
Confidence            34455666666654333221 223345566666554211    11111   2356677888999988877664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.40  E-value=1.8e-06  Score=84.67  Aligned_cols=211  Identities=14%  Similarity=0.040  Sum_probs=115.1

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeec--eeec--CCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKN--AWLS--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~--~~~d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      ..+++|++.+..-    .....+|.....++.|++|+|.+  ...+  +..+..+++|++|+|.+..+.+..- ..+..+
T Consensus        50 ~~l~~L~L~~~~l----~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l  124 (313)
T 1ogq_A           50 YRVNNLDLSGLNL----PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQI  124 (313)
T ss_dssp             CCEEEEEEECCCC----SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGC
T ss_pred             ceEEEEECCCCCc----cCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCC-HHHhCC
Confidence            5788999974321    11113444556788999999983  3332  3457889999999999887753211 224569


Q ss_pred             CcCCeEEEeccccc-ccCc--cccccccEEEeeecC----CcceEEecCC-ceeEEEeeeecCCce---eeeCCccceEE
Q 012979          203 PCLQVLNLVGVGGF-RQPK--IHLLHLKSCLWTVSN----APLSLAIYAP-NLVKLELRCVKPKSL---VLQTPLLHDFC  271 (452)
Q Consensus       203 P~Le~L~L~~~~g~-~~~~--l~~~sLr~l~l~~s~----~~~~l~~~aP-~Le~L~l~~~~~~~l---~i~~p~L~~~~  271 (452)
                      ++|++|+|.++.-. ..+.  -.+++|+++.+....    .+..+. ..+ +|+.|++........   .+....|+.+.
T Consensus       125 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~  203 (313)
T 1ogq_A          125 KTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD  203 (313)
T ss_dssp             TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEE
T ss_pred             CCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCcccEEE
Confidence            99999999765311 1222  236788887554221    111222 333 888888753221100   00111244433


Q ss_pred             Eee---cccccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEc
Q 012979          272 LSL---EVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLG  348 (452)
Q Consensus       272 l~i---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~  348 (452)
                      +.-   .......+.++++|+.|+++...+......+...++++.|.+.-...    .   -.++..+..+|+|+.|++.
T Consensus       204 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l----~---~~~p~~l~~l~~L~~L~Ls  276 (313)
T 1ogq_A          204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI----Y---GTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC----E---ECCCGGGGGCTTCCEEECC
T ss_pred             CcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcc----c---CcCChHHhcCcCCCEEECc
Confidence            321   11122244567777788877544432233345567777777532211    0   0124556777888888876


Q ss_pred             cC
Q 012979          349 PR  350 (452)
Q Consensus       349 ~~  350 (452)
                      ..
T Consensus       277 ~N  278 (313)
T 1ogq_A          277 FN  278 (313)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.39  E-value=1.3e-06  Score=89.38  Aligned_cols=60  Identities=15%  Similarity=0.081  Sum_probs=32.0

Q ss_pred             ccCCCCcEEEeeceeec---C--CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          154 SCCKSLVELEVKNAWLS---V--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~d---~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ..+++|++|+|.+..+.   +  ..+..+++|++|+|.+-.+.+..-..++..++.|++|+|.++
T Consensus       100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  164 (455)
T 3v47_A          100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN  164 (455)
T ss_dssp             TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTC
T ss_pred             cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCC
Confidence            34566666666653221   1  125566666666666655543322223455666666666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.38  E-value=1.9e-06  Score=89.04  Aligned_cols=58  Identities=22%  Similarity=0.326  Sum_probs=30.2

Q ss_pred             cccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          283 QEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       283 ~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      ..+++|+.|+++...+.... .+..+++++.|.+.-.    ...    +++. +..+|+|+.|++...
T Consensus       240 ~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n----~l~----~~~~-~~~l~~L~~L~L~~n  297 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQISNLA-PLSGLTKLTELKLGAN----QIS----NISP-LAGLTALTNLELNEN  297 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSS----CCC----CCGG-GTTCTTCSEEECCSS
T ss_pred             hcCCCCCEEECCCCccccch-hhhcCCCCCEEECCCC----ccC----cccc-ccCCCccCeEEcCCC
Confidence            34556666666543333221 1445566666554211    110    1122 677889999998654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.37  E-value=2.6e-06  Score=85.70  Aligned_cols=160  Identities=16%  Similarity=0.083  Sum_probs=71.3

Q ss_pred             ccCCCCcEEEeeceee-cCC-C-CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEE
Q 012979          154 SCCKSLVELEVKNAWL-SVD-N-LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCL  230 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d~~-~-l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~  230 (452)
                      ..+++|++|+|.+..+ ..+ . +..+++|++|+|.+-.+..-.- ..+..++.|++|+|.++.-...+--.+++|+.+.
T Consensus       114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~  192 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHAN  192 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEE
T ss_pred             cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccCh-hhccCCCCCCEEECCCCcCCccccccccccceee
Confidence            3566777777775322 222 2 4566777777776655542211 1235567777777755421111112245666653


Q ss_pred             eeecCCcceEEecCCceeEEEeeeecCCceee-eCCccceEEEeecccc-cccccccCcccEEEEeecccccc-cccccc
Q 012979          231 WTVSNAPLSLAIYAPNLVKLELRCVKPKSLVL-QTPLLHDFCLSLEVAN-EIRFQEFRNLMNLQLESSSLSSL-INTFPF  307 (452)
Q Consensus       231 l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i-~~p~L~~~~l~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~  307 (452)
                      +.... ...+. ..++|++|++.......... ..+.|+.+.+.-.... ...+.++++|++|+++...+..+ ...+..
T Consensus       193 l~~n~-l~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (390)
T 3o6n_A          193 VSYNL-LSTLA-IPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVK  270 (390)
T ss_dssp             CCSSC-CSEEE-CCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred             ccccc-ccccC-CCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccc
Confidence            32111 11122 34566666654322111100 0123333332211110 01334556666666664433322 223445


Q ss_pred             CCceeEEEE
Q 012979          308 GKTIKKLKV  316 (452)
Q Consensus       308 ~p~lkkL~L  316 (452)
                      +++++.|.+
T Consensus       271 l~~L~~L~L  279 (390)
T 3o6n_A          271 MQRLERLYI  279 (390)
T ss_dssp             CSSCCEEEC
T ss_pred             cccCCEEEC
Confidence            566666654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=98.36  E-value=1.8e-06  Score=85.46  Aligned_cols=168  Identities=21%  Similarity=0.183  Sum_probs=107.2

Q ss_pred             CCCCcEEEeeceee-c-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc--cccccccEEEe
Q 012979          156 CKSLVELEVKNAWL-S-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK--IHLLHLKSCLW  231 (452)
Q Consensus       156 c~~L~~L~L~~~~~-d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~--l~~~sLr~l~l  231 (452)
                      ...++.|+|.+..+ . ++.+..+++|++|+|.+..+.  .+..-+..+++|++|+|.++.-...+.  -.+++|+.+.+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L  157 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI  157 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence            36799999997433 2 345778999999999988776  333344679999999998764222222  23567777755


Q ss_pred             eecC----CcceEE--------ecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccc
Q 012979          232 TVSN----APLSLA--------IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLS  299 (452)
Q Consensus       232 ~~s~----~~~~l~--------~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~  299 (452)
                      .-..    .+..+.        -..++|+.|++.....                 ...|. .+.++++|++|+++...+.
T Consensus       158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-----------------~~lp~-~l~~l~~L~~L~L~~N~l~  219 (328)
T 4fcg_A          158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-----------------RSLPA-SIANLQNLKSLKIRNSPLS  219 (328)
T ss_dssp             EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-----------------CCCCG-GGGGCTTCCEEEEESSCCC
T ss_pred             CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-----------------CcchH-hhcCCCCCCEEEccCCCCC
Confidence            4321    111111        1367777777643211                 11121 3667889999999976665


Q ss_pred             ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          300 SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       300 ~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .+...+..+++++.|.+.-.....       .++..+..+|+|++|+|...
T Consensus       220 ~l~~~l~~l~~L~~L~Ls~n~~~~-------~~p~~~~~l~~L~~L~L~~n  263 (328)
T 4fcg_A          220 ALGPAIHHLPKLEELDLRGCTALR-------NYPPIFGGRAPLKRLILKDC  263 (328)
T ss_dssp             CCCGGGGGCTTCCEEECTTCTTCC-------BCCCCTTCCCCCCEEECTTC
T ss_pred             cCchhhccCCCCCEEECcCCcchh-------hhHHHhcCCCCCCEEECCCC
Confidence            555556778999998863211111       12456778999999999763

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.35  E-value=6e-07  Score=88.12  Aligned_cols=117  Identities=15%  Similarity=0.021  Sum_probs=68.5

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..+.|++|++++..-      ....+.....+++|++|+|.+..+ +.+++..+++|++|+|.+-.+.+-      ..+|
T Consensus        32 ~~~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l------~~~~   99 (317)
T 3o53_A           32 SAWNVKELDLSGNPL------SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGP   99 (317)
T ss_dssp             TGGGCSEEECTTSCC------CCCCHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEE------EECT
T ss_pred             cCCCCCEEECcCCcc------CcCCHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccc------cCCC
Confidence            356789999974321      112222345688999999987433 333478899999999987766542      2358


Q ss_pred             cCCeEEEecccccccCccccccccEEEeeecC---CcceEEecCCceeEEEee
Q 012979          204 CLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSN---APLSLAIYAPNLVKLELR  253 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~  253 (452)
                      .|++|.+.++.-...+.-.+++|+.+.+.-..   .........++|++|++.
T Consensus       100 ~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls  152 (317)
T 3o53_A          100 SIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK  152 (317)
T ss_dssp             TCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT
T ss_pred             CcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECC
Confidence            99999997653211122235566666443211   111111245677777764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.34  E-value=2.8e-07  Score=66.45  Aligned_cols=36  Identities=31%  Similarity=0.385  Sum_probs=33.4

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK   38 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~   38 (452)
                      ++.||+|++.+|+++|+ .+|+++++.|||+|+.+..
T Consensus         9 ~~~LP~eil~~I~~~L~-~~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            9 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHHT
T ss_pred             HHHCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhC
Confidence            57899999999999996 9999999999999999864

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.30  E-value=2.7e-06  Score=88.23  Aligned_cols=155  Identities=16%  Similarity=0.107  Sum_probs=65.4

Q ss_pred             cCCCCcEEEeeceeecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc-cccccccEEEeee
Q 012979          155 CCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK-IHLLHLKSCLWTV  233 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~-l~~~sLr~l~l~~  233 (452)
                      .+++|++|+|++..+...++..+++|++|+|.+-.+++-.    +..++.|++|.+.++. ..... -.+++|+.+.+..
T Consensus        83 ~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N~l~~l~----~~~l~~L~~L~l~~N~-l~~l~l~~l~~L~~L~l~~  157 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLD----VSQNPLLTYLNCARNT-LTEIDVSHNTQLTELDCHL  157 (457)
T ss_dssp             TCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSSCCSCCC----CTTCTTCCEEECTTSC-CSCCCCTTCTTCCEEECTT
T ss_pred             cCCCCCEEECcCCCCceeecCCCCcCCEEECCCCcCCeec----CCCCCcCCEEECCCCc-cceeccccCCcCCEEECCC
Confidence            3455555555543222112455555555555555444322    3445566666554332 11111 1234455543321


Q ss_pred             cC-CcceEEecCCceeEEEeeeecCCceee-eCCccceEEEeecccccccccccCcccEEEEeeccccccccccccCCce
Q 012979          234 SN-APLSLAIYAPNLVKLELRCVKPKSLVL-QTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTI  311 (452)
Q Consensus       234 s~-~~~~l~~~aP~Le~L~l~~~~~~~l~i-~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~l  311 (452)
                      .. ....-....++|+.|++.........+ ..+.|+.+.+.-.+...+.+.++++|+.|+++...+..+ . +..++++
T Consensus       158 n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~i-p-~~~l~~L  235 (457)
T 3bz5_A          158 NKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI-D-VTPLTQL  235 (457)
T ss_dssp             CSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCC-C-CTTCTTC
T ss_pred             CCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCccccc-C-ccccCCC
Confidence            10 000001144566666654332211111 122334433321122223445566666666665444332 2 4456666


Q ss_pred             eEEEE
Q 012979          312 KKLKV  316 (452)
Q Consensus       312 kkL~L  316 (452)
                      +.|.+
T Consensus       236 ~~L~l  240 (457)
T 3bz5_A          236 TYFDC  240 (457)
T ss_dssp             SEEEC
T ss_pred             CEEEe
Confidence            66654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.30  E-value=1.1e-05  Score=80.00  Aligned_cols=176  Identities=19%  Similarity=0.217  Sum_probs=101.1

Q ss_pred             cCCceEEEeeecccccccccccccce-ecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhcc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDC  201 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~  201 (452)
                      .+.+++|++++..-       ..++. ....+++|+.|+|.+..+   .+..+..+++|++|+|.+-.+..-.- ..+..
T Consensus        51 ~~~L~~L~l~~n~i-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~  122 (353)
T 2z80_A           51 TEAVKSLDLSNNRI-------TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS-SWFKP  122 (353)
T ss_dssp             CTTCCEEECTTSCC-------CEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCH-HHHTT
T ss_pred             cccCcEEECCCCcC-------cccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCH-hHhCC
Confidence            35788998864321       01222 234688999999986432   23457888999999998877764222 33567


Q ss_pred             CCcCCeEEEecccccccCccccccccEEEeeecCCcc-eEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccc
Q 012979          202 FPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPL-SLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEI  280 (452)
Q Consensus       202 cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~-~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~  280 (452)
                      +++|++|+|.++. ...                 ... ...-..++|++|++......         .       ..+..
T Consensus       123 l~~L~~L~L~~n~-l~~-----------------l~~~~~~~~l~~L~~L~l~~n~~~---------~-------~~~~~  168 (353)
T 2z80_A          123 LSSLTFLNLLGNP-YKT-----------------LGETSLFSHLTKLQILRVGNMDTF---------T-------KIQRK  168 (353)
T ss_dssp             CTTCSEEECTTCC-CSS-----------------SCSSCSCTTCTTCCEEEEEESSSC---------C-------EECTT
T ss_pred             CccCCEEECCCCC-Ccc-----------------cCchhhhccCCCCcEEECCCCccc---------c-------ccCHH
Confidence            8999999996542 111                 001 11125678888887532100         0       01112


Q ss_pred             cccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          281 RFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       281 ~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .+.++.+|++|+++...+..+ ...+..+++++.|.+.-...    ..+   +..++..+|+|++|++...
T Consensus       169 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l----~~~---~~~~~~~~~~L~~L~L~~n  232 (353)
T 2z80_A          169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH----ILL---LEIFVDVTSSVECLELRDT  232 (353)
T ss_dssp             TTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS----TTH---HHHHHHHTTTEEEEEEESC
T ss_pred             HccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc----ccc---hhhhhhhcccccEEECCCC
Confidence            445667777888876444332 23445677777777642211    111   2355666788888887654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.29  E-value=1.4e-06  Score=91.09  Aligned_cols=117  Identities=15%  Similarity=0.020  Sum_probs=70.5

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.|++|+|++..-      ....|.....+++|+.|+|.+..+ +.+++..+++|++|+|.+-.+.+-      ..+|.
T Consensus        33 ~~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l------~~~~~  100 (487)
T 3oja_A           33 AWNVKELDLSGNPL------SQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL------LVGPS  100 (487)
T ss_dssp             GGGCCEEECCSSCC------CCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEE------EECTT
T ss_pred             CCCccEEEeeCCcC------CCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCC------CCCCC
Confidence            45789999974321      112223345688999999997433 333488899999999988776542      23489


Q ss_pred             CCeEEEecccccccCccccccccEEEeeecC---CcceEEecCCceeEEEeee
Q 012979          205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSN---APLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~  254 (452)
                      |++|+|.++.-...+.-.+++|+.+.+.-..   ......-..++|++|++..
T Consensus       101 L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~  153 (487)
T 3oja_A          101 IETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL  153 (487)
T ss_dssp             CCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT
T ss_pred             cCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC
Confidence            9999997653222222335677777543221   1111112567888888754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=98.28  E-value=4e-06  Score=84.27  Aligned_cols=209  Identities=14%  Similarity=0.104  Sum_probs=113.9

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      .+.|++|++.+..-.      ...+.....+++|++|+|.+..+ +  +..+..+++|++|+|.+..+..-. ..++..+
T Consensus        68 l~~L~~L~L~~n~i~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l  140 (390)
T 3o6n_A           68 FRQVELLNLNDLQIE------EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNT  140 (390)
T ss_dssp             CCCCSEEECTTSCCC------EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred             cccCcEEECCCCccc------ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC-HHHhcCC
Confidence            467888888643110      11111234678899999986433 2  234678899999999877665211 1234668


Q ss_pred             CcCCeEEEeccccccc-Cc-c-ccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccc
Q 012979          203 PCLQVLNLVGVGGFRQ-PK-I-HLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANE  279 (452)
Q Consensus       203 P~Le~L~L~~~~g~~~-~~-l-~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~  279 (452)
                      |+|++|+|.++.-... +. + .+++|+.+.+.-......-.-..|+|+.|.+........ -..+.++.+.+.-.....
T Consensus       141 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~L~~L~l~~n~l~~  219 (390)
T 3o6n_A          141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL-AIPIAVEELDASHNSINV  219 (390)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEE-ECCSSCSEEECCSSCCCE
T ss_pred             CCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccccc-CCCCcceEEECCCCeeee
Confidence            8999999976531111 11 2 356788775542221111112567888888754332211 112345554432212222


Q ss_pred             ccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          280 IRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       280 ~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +......+|+.|+++...+.. ...+..+++++.|.+.-... .+   .   ++..+..+|+|++|++...
T Consensus       220 ~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l-~~---~---~~~~~~~l~~L~~L~L~~n  282 (390)
T 3o6n_A          220 VRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNEL-EK---I---MYHPFVKMQRLERLYISNN  282 (390)
T ss_dssp             EECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCC-CE---E---ESGGGTTCSSCCEEECCSS
T ss_pred             ccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcC-CC---c---ChhHccccccCCEEECCCC
Confidence            222234688899998655543 34556788999988642211 10   0   1344556677777777543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.28  E-value=3.9e-06  Score=89.65  Aligned_cols=98  Identities=16%  Similarity=0.047  Sum_probs=49.9

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC-C-CCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD-N-LNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~-~-l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      ...|+.|+|++...      ....+....++++|+.|+|.+..+ ..+ . +..+++|++|+|.+-.+..-.- ..+..+
T Consensus        98 l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l  170 (597)
T 3oja_B           98 AHTIQKLYMGFNAI------RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED-DTFQAT  170 (597)
T ss_dssp             CTTCCEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTC
T ss_pred             CCCCCEEECCCCcC------CCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCCh-hhhhcC
Confidence            35677777753211      111122234567777777776332 222 2 4667777777777655543211 123457


Q ss_pred             CcCCeEEEecccccccCccccccccEEE
Q 012979          203 PCLQVLNLVGVGGFRQPKIHLLHLKSCL  230 (452)
Q Consensus       203 P~Le~L~L~~~~g~~~~~l~~~sLr~l~  230 (452)
                      ++|++|+|.++.-...+--.+++|+.+.
T Consensus       171 ~~L~~L~L~~N~l~~~~~~~l~~L~~L~  198 (597)
T 3oja_B          171 TSLQNLQLSSNRLTHVDLSLIPSLFHAN  198 (597)
T ss_dssp             TTCCEEECTTSCCSBCCGGGCTTCSEEE
T ss_pred             CcCcEEECcCCCCCCcChhhhhhhhhhh
Confidence            7777777765421111112245666653

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=98.28  E-value=9e-06  Score=83.94  Aligned_cols=141  Identities=18%  Similarity=0.146  Sum_probs=74.4

Q ss_pred             hccCCcCCeEEEecccccccCc-cccccccEEEeeecCCc--ceEEecCCceeEEEeeeecCCce--eeeCCccceEEEe
Q 012979          199 NDCFPCLQVLNLVGVGGFRQPK-IHLLHLKSCLWTVSNAP--LSLAIYAPNLVKLELRCVKPKSL--VLQTPLLHDFCLS  273 (452)
Q Consensus       199 l~~cP~Le~L~L~~~~g~~~~~-l~~~sLr~l~l~~s~~~--~~l~~~aP~Le~L~l~~~~~~~l--~i~~p~L~~~~l~  273 (452)
                      +..++.|++|+|.++.-...+. -.+++|+++.+.-....  ..+ -..++|+.|++........  .-..+.|+.+.+.
T Consensus       173 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~  251 (466)
T 1o6v_A          173 LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL-GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLA  251 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECC
T ss_pred             hccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccc-cccCCCCEEECCCCCcccchhhhcCCCCCEEECC
Confidence            3456666666665442111111 22456666644322110  011 2467777777754322111  1123455555443


Q ss_pred             eccccc-ccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          274 LEVANE-IRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       274 i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      -..... ..+.++++|++|+++...+..+.. +..+++++.|.+.-..    ...    ++. +..+|+|+.|++...
T Consensus       252 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~----l~~----~~~-~~~l~~L~~L~L~~n  319 (466)
T 1o6v_A          252 NNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQ----LED----ISP-ISNLKNLTYLTLYFN  319 (466)
T ss_dssp             SSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSC----CSC----CGG-GGGCTTCSEEECCSS
T ss_pred             CCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCc----ccC----chh-hcCCCCCCEEECcCC
Confidence            211111 126678899999998755544322 5678999998863221    111    122 678999999999765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=98.23  E-value=8.4e-07  Score=86.18  Aligned_cols=60  Identities=17%  Similarity=0.086  Sum_probs=33.2

Q ss_pred             ccCCCCcEEEeeceee-c-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          154 SCCKSLVELEVKNAWL-S-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ..+++|++|+|++..+ . ++.+..+++|++|+|.+..+.+-.-...+..+++|++|+|.++
T Consensus        75 ~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  136 (306)
T 2z66_A           75 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT  136 (306)
T ss_dssp             HSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS
T ss_pred             ccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC
Confidence            3466777777765322 1 1235566777777776655543222123455677777777543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=98.22  E-value=8.1e-06  Score=84.26  Aligned_cols=57  Identities=16%  Similarity=0.170  Sum_probs=28.4

Q ss_pred             cccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          287 NLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       287 ~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +|++|+++...+..+. ..+..+++++.|.+.-..    ....   .+..+..+|+|++|++...
T Consensus       225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~----l~~~---~~~~~~~l~~L~~L~L~~n  282 (477)
T 2id5_A          225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP----ISTI---EGSMLHELLRLQEIQLVGG  282 (477)
T ss_dssp             CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC----CCEE---CTTSCTTCTTCCEEECCSS
T ss_pred             cccEEECcCCcccccCHHHhcCccccCeeECCCCc----CCcc---ChhhccccccCCEEECCCC
Confidence            5555555543332221 123456666666642111    1111   1244667888888888654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.20  E-value=4.4e-06  Score=81.72  Aligned_cols=77  Identities=17%  Similarity=0.211  Sum_probs=54.8

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.|++|.+.+..-       ..++. ...+++|++|+|.+..+ +.+.+..+++|++|+|.+-.+.+-.   -+..++.
T Consensus        40 l~~L~~L~l~~~~i-------~~l~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~l~~  108 (308)
T 1h6u_A           40 LDGITTLSAFGTGV-------TTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS---AIAGLQS  108 (308)
T ss_dssp             HHTCCEEECTTSCC-------CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG---GGTTCTT
T ss_pred             cCCcCEEEeeCCCc-------cCchh-hhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCch---hhcCCCC
Confidence            46788998864321       12332 34688999999997543 4444888999999999988776532   2577999


Q ss_pred             CCeEEEecc
Q 012979          205 LQVLNLVGV  213 (452)
Q Consensus       205 Le~L~L~~~  213 (452)
                      |++|+|.++
T Consensus       109 L~~L~l~~n  117 (308)
T 1h6u_A          109 IKTLDLTST  117 (308)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEECCCC
Confidence            999999765

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.20  E-value=4.2e-06  Score=76.19  Aligned_cols=149  Identities=13%  Similarity=0.154  Sum_probs=94.6

Q ss_pred             ccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979          154 SCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT  232 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~  232 (452)
                      ..+++|+.|+|.+..+ +.+++..+++|++|+|.+..+.+-  . -++.+|+|++|.|.++. ....             
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l~~n~-l~~~-------------  103 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY--N-PISGLSNLERLRIMGKD-VTSD-------------  103 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC--G-GGTTCTTCCEEEEECTT-CBGG-------------
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc--h-hhhcCCCCCEEEeECCc-cCcc-------------
Confidence            4577899999997433 446788899999999988755442  2 35679999999997643 1110             


Q ss_pred             ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecc-ccccccccccCCce
Q 012979          233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSS-LSSLINTFPFGKTI  311 (452)
Q Consensus       233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~l~~~~p~l  311 (452)
                         ....+. ..|+|++|++......                 ....-.+.++++|++|+++... +.. +..+..++++
T Consensus       104 ---~~~~l~-~l~~L~~L~Ls~n~i~-----------------~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L  161 (197)
T 4ezg_A          104 ---KIPNLS-GLTSLTLLDISHSAHD-----------------DSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPEL  161 (197)
T ss_dssp             ---GSCCCT-TCTTCCEEECCSSBCB-----------------GGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSC
T ss_pred             ---cChhhc-CCCCCCEEEecCCccC-----------------cHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCC
Confidence               001122 5688999888543211                 0000134567888999998654 433 3456678899


Q ss_pred             eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +.|.+.-. ...+       ++ .+..+|+|++|++.+.
T Consensus       162 ~~L~l~~n-~i~~-------~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          162 KSLNIQFD-GVHD-------YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CEEECTTB-CCCC-------CT-TGGGCSSCCEEEECBC
T ss_pred             CEEECCCC-CCcC-------hH-HhccCCCCCEEEeeCc
Confidence            99886321 1111       12 5678899999999654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.19  E-value=4.2e-06  Score=79.99  Aligned_cols=80  Identities=16%  Similarity=0.073  Sum_probs=51.2

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      .++++|++++..-.      ..-+.....+++|++|+|.+..+   ....+..+++|++|+|.+-.+..-... .+..++
T Consensus        28 ~~l~~L~ls~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLSFNPLR------HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG-AFSGLS  100 (276)
T ss_dssp             TTCCEEECTTCCCC------EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTT-TTTTCT
T ss_pred             CCccEEECCCCccc------ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChh-hhcCCc
Confidence            56888888643110      11111234678899999987433   233577889999999987766543222 245689


Q ss_pred             cCCeEEEecc
Q 012979          204 CLQVLNLVGV  213 (452)
Q Consensus       204 ~Le~L~L~~~  213 (452)
                      +|++|.+.++
T Consensus       101 ~L~~L~l~~n  110 (276)
T 2z62_A          101 SLQKLVAVET  110 (276)
T ss_dssp             TCCEEECTTS
T ss_pred             cccEEECCCC
Confidence            9999999654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.18  E-value=7.7e-07  Score=89.78  Aligned_cols=165  Identities=19%  Similarity=0.113  Sum_probs=93.8

Q ss_pred             CCCCCCceeeeeeEee--------cchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeeecCCcc----eEE-
Q 012979          175 NQMPMLTKLTLEFIRL--------EDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPL----SLA-  241 (452)
Q Consensus       175 ~~fp~Lr~L~L~~v~i--------~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~----~l~-  241 (452)
                      ..||+|++|.|..+..        ...++..+++.+|+||+|.|.|+.+...+.+.+++|+++.+..+....    .+. 
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHH
Confidence            4567777777655432        234688899999999999998875554445668899999776443211    121 


Q ss_pred             ecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccc-c-cccc--ccCCceeEEEEE
Q 012979          242 IYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSS-L-INTF--PFGKTIKKLKVE  317 (452)
Q Consensus       242 ~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~-~-~~l~--~~~p~lkkL~L~  317 (452)
                      ...|+|++|+++..... + .....+..+.      +.+...++++|+.|.+..+.+.. . ..++  ..+|+|++|.|.
T Consensus       216 ~~lp~L~~L~L~~~~~~-~-~~~~~~~~l~------~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs  287 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVED-Y-GFDGDMNVFR------PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS  287 (362)
T ss_dssp             SBCTTCCEEEEECBCGG-G-TCCSCGGGTG------GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECC
T ss_pred             ccCCCCcEEEEeccccc-c-ccchhHHHHH------HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECC
Confidence            26799999998532100 0 0000011100      11222457899999997544321 1 1111  357899998873


Q ss_pred             eccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          318 LLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       318 ~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .. ...+....  .+..-++++|+|++|+|...
T Consensus       288 ~n-~L~d~G~~--~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          288 AG-VLTDEGAR--LLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             SS-CCBHHHHH--HHHTTHHHHTTCSEEECCSB
T ss_pred             CC-CCChHHHH--HHHhhcccCCcceEEECCCC
Confidence            32 11111110  12234577899999999654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.18  E-value=1.2e-05  Score=78.78  Aligned_cols=63  Identities=14%  Similarity=0.149  Sum_probs=35.2

Q ss_pred             cccccCcccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCc
Q 012979          281 RFQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRA  351 (452)
Q Consensus       281 ~l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~  351 (452)
                      .+.++.+|++|+++...+..+. ..+..+++++.|.+.-..    ..    .++.-+..+|+|++|++....
T Consensus       211 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~----l~----~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK----LV----KVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             GGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC----CS----SCCTTTTTCSSCCEEECCSSC
T ss_pred             HhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc----Cc----cCChhhccCCCcCEEECCCCc
Confidence            3456677777877754443322 234556777777653211    11    123345667788888876543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.17  E-value=3.6e-06  Score=80.45  Aligned_cols=65  Identities=23%  Similarity=0.352  Sum_probs=36.8

Q ss_pred             ccccCcccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979          282 FQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS  353 (452)
Q Consensus       282 l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~  353 (452)
                      +.++++|++|+++...+..+. ..+..+++++.|.+.-..    ...+   ++..+..+|+|+.|++.+..|.
T Consensus       153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~----l~~~---~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ----LKRV---PEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC----CSCC---CTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc----CCcC---CHHHhccccCCCEEEecCCCee
Confidence            456777888888754443322 224556778887753211    1111   1245667788888888766443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.17  E-value=3.7e-06  Score=80.52  Aligned_cols=176  Identities=20%  Similarity=0.182  Sum_probs=95.3

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.+++|.+.+...       ..++. ...+++|++|+|.+..+ +.+.+..+++|++|+|.+..+.+-. ...+..++.
T Consensus        40 l~~L~~L~l~~~~i-------~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~  110 (272)
T 3rfs_A           40 LNSIDQIIANNSDI-------KSVQG-IQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLP-NGVFDKLTN  110 (272)
T ss_dssp             HTTCCEEECTTSCC-------CCCTT-GGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCC-TTTTTTCTT
T ss_pred             ccceeeeeeCCCCc-------ccccc-cccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccC-hhHhcCCcC
Confidence            45677777753311       11222 23577788888876333 3455677788888888766555321 122355788


Q ss_pred             CCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccc
Q 012979          205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQE  284 (452)
Q Consensus       205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~  284 (452)
                      |++|+|.++. ...                 ......-..++|++|++.....                 ...+.-.+.+
T Consensus       111 L~~L~L~~n~-l~~-----------------~~~~~~~~l~~L~~L~L~~n~l-----------------~~~~~~~~~~  155 (272)
T 3rfs_A          111 LKELVLVENQ-LQS-----------------LPDGVFDKLTNLTYLNLAHNQL-----------------QSLPKGVFDK  155 (272)
T ss_dssp             CCEEECTTSC-CCC-----------------CCTTTTTTCTTCCEEECCSSCC-----------------CCCCTTTTTT
T ss_pred             CCEEECCCCc-CCc-----------------cCHHHhccCCCCCEEECCCCcc-----------------CccCHHHhcc
Confidence            8888886542 110                 0001111457788877743211                 1111123456


Q ss_pred             cCcccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979          285 FRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW  352 (452)
Q Consensus       285 ~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~  352 (452)
                      +.+|++|+++...+..+. ..+..+++++.|.+.-... .   -.   ++..+..+|+|+.|++....|
T Consensus       156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~---~~---~~~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL-K---SV---PDGVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-S---CC---CTTTTTTCTTCCEEECCSSCB
T ss_pred             CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC-C---cc---CHHHHhCCcCCCEEEccCCCc
Confidence            778888888765443322 2245677888877532211 1   11   235567788888888866533

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.16  E-value=7.7e-06  Score=87.36  Aligned_cols=121  Identities=15%  Similarity=0.149  Sum_probs=71.2

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      .+.|+.|+|.+..-      ....+.....+++|+.|+|++..+ .  +..++.+++|++|+|.+..+..-. ..++..+
T Consensus        74 l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l  146 (597)
T 3oja_B           74 FRQVELLNLNDLQI------EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP-RGIFHNT  146 (597)
T ss_dssp             CCCCSEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred             CCCCcEEECCCCCC------CCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC-HHHhccC
Confidence            47788998864321      111122334688999999997433 2  234688999999999887765211 1334679


Q ss_pred             CcCCeEEEecccccccC--cc-ccccccEEEeeecCCcceEEecCCceeEEEee
Q 012979          203 PCLQVLNLVGVGGFRQP--KI-HLLHLKSCLWTVSNAPLSLAIYAPNLVKLELR  253 (452)
Q Consensus       203 P~Le~L~L~~~~g~~~~--~l-~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~  253 (452)
                      |+|++|+|.++.-...+  .+ .+++|+.+.+.-......-.-..|+|+.|.+.
T Consensus       147 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~  200 (597)
T 3oja_B          147 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS  200 (597)
T ss_dssp             TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred             CCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence            99999999765321111  12 36788888553221111111245666666654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.15  E-value=1.3e-05  Score=84.09  Aligned_cols=228  Identities=17%  Similarity=0.103  Sum_probs=105.5

Q ss_pred             cccCCCCcEEEeeceeecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccccccc---Cc--ccccccc
Q 012979          153 SSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQ---PK--IHLLHLK  227 (452)
Q Consensus       153 ~~~c~~L~~L~L~~~~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~---~~--l~~~sLr  227 (452)
                      ...+ +|++|+|.++.+..-....+++|++|++.+..+....- .  ..+|.|++|+|.++.-...   +.  -.+++|+
T Consensus       301 ~~~~-~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~-~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~  376 (570)
T 2z63_A          301 SYNF-GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFS-E--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK  376 (570)
T ss_dssp             CSCC-CCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCC-C--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCC
T ss_pred             hccC-CccEEeeccCcccccCcccccccCEEeCcCCccccccc-c--ccCCCCCEEeCcCCccCccccccccccccCccC
Confidence            3344 66666666533321112456666666666544432110 0  4567777777754321110   00  2345666


Q ss_pred             EEEeeecC---CcceEEecCCceeEEEeeeecCC-----ceeeeCCccceEEEeecc---cccccccccCcccEEEEeec
Q 012979          228 SCLWTVSN---APLSLAIYAPNLVKLELRCVKPK-----SLVLQTPLLHDFCLSLEV---ANEIRFQEFRNLMNLQLESS  296 (452)
Q Consensus       228 ~l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~-----~l~i~~p~L~~~~l~i~~---~~~~~l~~~~~L~~L~l~~~  296 (452)
                      .+.+....   .... ....++|++|++......     ...-..+.|+.+.+.-..   ...-.+.++++|++|++++.
T Consensus       377 ~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          377 YLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             EEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             EEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            66443211   1112 236677777776432110     001122344444332111   11123456777778877654


Q ss_pred             ccc--ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhhhhhccccCccccccccccce
Q 012979          297 SLS--SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLK  374 (452)
Q Consensus       297 ~~~--~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~lk  374 (452)
                      .+.  .+...+..+++++.|.+.-. ...+     + .+..+..+|+|++|++........    ....   ....+.++
T Consensus       456 ~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~-----~-~~~~~~~l~~L~~L~l~~n~l~~~----~~~~---~~~l~~L~  521 (570)
T 2z63_A          456 SFQENFLPDIFTELRNLTFLDLSQC-QLEQ-----L-SPTAFNSLSSLQVLNMASNQLKSV----PDGI---FDRLTSLQ  521 (570)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTS-CCCE-----E-CTTTTTTCTTCCEEECCSSCCSCC----CTTT---TTTCTTCC
T ss_pred             cCccccchhhhhcccCCCEEECCCC-cccc-----C-ChhhhhcccCCCEEeCCCCcCCCC----CHHH---hhcccCCc
Confidence            332  23344566777887765211 1110     0 134566788888888865411111    1000   11235777


Q ss_pred             eEEEEE--eecCCcchhHHH-HHHHhccc
Q 012979          375 EIIARL--VVDDISVTRSFI-FAIMNICS  400 (452)
Q Consensus       375 ~lv~~~--~~~~~~~~~~fl-~~ll~~a~  400 (452)
                      ++.+..  +.++ -....|+ .++-.+..
T Consensus       522 ~L~l~~N~~~~~-~~~~~~~~~wl~~~~~  549 (570)
T 2z63_A          522 KIWLHTNPWDCS-CPRIDYLSRWLNKNSQ  549 (570)
T ss_dssp             EEECCSSCBCCC-TTTTHHHHHHHHHTGG
T ss_pred             EEEecCCcccCC-CcchHHHHHHHHhccc
Confidence            776662  2232 3455666 55555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=98.15  E-value=1.8e-06  Score=85.71  Aligned_cols=198  Identities=19%  Similarity=0.189  Sum_probs=100.3

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCC--CCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDN--LNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~--l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      .+.|++|++.+..-      ....+.....+++|++|+|++..+ ..+.  +..+++|++|+|.+-.+..-.-...+..+
T Consensus        75 l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l  148 (353)
T 2z80_A           75 CVNLQALVLTSNGI------NTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL  148 (353)
T ss_dssp             CTTCCEEECTTSCC------CEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC
T ss_pred             CCCCCEEECCCCcc------CccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccC
Confidence            46788998864311      111122234678999999987433 2222  67899999999988766532111245679


Q ss_pred             CcCCeEEEeccccccc--C-c-cccccccEEEeeecCC----cceEEecCCceeEEEeeeecCCceeeeCCccceEEEee
Q 012979          203 PCLQVLNLVGVGGFRQ--P-K-IHLLHLKSCLWTVSNA----PLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSL  274 (452)
Q Consensus       203 P~Le~L~L~~~~g~~~--~-~-l~~~sLr~l~l~~s~~----~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i  274 (452)
                      |+|++|++.++.....  + . -.+++|+.+.+.-...    ...+. ..++|+.|++....                 +
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~-----------------l  210 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMKQ-----------------H  210 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSC-----------------S
T ss_pred             CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCCc-----------------c
Confidence            9999999977521111  1 1 1234444443321110    00111 33445555443211                 1


Q ss_pred             cccccccccccCcccEEEEeecccccc----ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          275 EVANEIRFQEFRNLMNLQLESSSLSSL----INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       275 ~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      ...+...+..+.+|++|+++...+...    .......+.++.+.+.-... .+...  ..++..+..+|+|++|++...
T Consensus       211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l-~~~~l--~~l~~~l~~l~~L~~L~Ls~N  287 (353)
T 2z80_A          211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKI-TDESL--FQVMKLLNQISGLLELEFSRN  287 (353)
T ss_dssp             TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBC-CHHHH--HHHHHHHHTCTTCCEEECCSS
T ss_pred             ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccc-cCcch--hhhHHHHhcccCCCEEECCCC
Confidence            111222233466777888875333221    11122345566665532211 11000  123566788889999988654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.13  E-value=4.2e-05  Score=80.06  Aligned_cols=80  Identities=21%  Similarity=0.155  Sum_probs=54.6

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      +.+++|++++..-      ....+....++++|++|+|++..+   .+..+..+++|++|+|.+-.+.+..-. .++.++
T Consensus        26 ~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~   98 (549)
T 2z81_A           26 AAMKSLDLSFNKI------TYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS-WFGPLS   98 (549)
T ss_dssp             TTCCEEECCSSCC------CEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH-HHTTCT
T ss_pred             CCccEEECcCCcc------CccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH-HhccCC
Confidence            6788999874321      111222345788999999997432   234578899999999988777643322 246799


Q ss_pred             cCCeEEEecc
Q 012979          204 CLQVLNLVGV  213 (452)
Q Consensus       204 ~Le~L~L~~~  213 (452)
                      +|++|+|.++
T Consensus        99 ~L~~L~Ls~n  108 (549)
T 2z81_A           99 SLKYLNLMGN  108 (549)
T ss_dssp             TCCEEECTTC
T ss_pred             CCcEEECCCC
Confidence            9999999765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.12  E-value=1.1e-05  Score=83.63  Aligned_cols=206  Identities=15%  Similarity=0.053  Sum_probs=119.8

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL  205 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L  205 (452)
                      .+.|++|++++..-    .   .++  ...+++|++|+|.+..+..-.+..+++|++|+|.+-.+.+-.    +..++.|
T Consensus        84 l~~L~~L~Ls~N~l----~---~~~--~~~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~----l~~l~~L  150 (457)
T 3bz5_A           84 NTNLTYLACDSNKL----T---NLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEID----VSHNTQL  150 (457)
T ss_dssp             CTTCSEEECCSSCC----S---CCC--CTTCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSCCC----CTTCTTC
T ss_pred             CCCCCEEECcCCCC----c---eee--cCCCCcCCEEECCCCcCCeecCCCCCcCCEEECCCCccceec----cccCCcC
Confidence            46677777753311    1   122  346789999999974443223788899999999887776643    5679999


Q ss_pred             CeEEEecccccccCc-cccccccEEEeeecCCcc-eEEecCCceeEEEeeeecCCceee-eCCccceEEEeecccccccc
Q 012979          206 QVLNLVGVGGFRQPK-IHLLHLKSCLWTVSNAPL-SLAIYAPNLVKLELRCVKPKSLVL-QTPLLHDFCLSLEVANEIRF  282 (452)
Q Consensus       206 e~L~L~~~~g~~~~~-l~~~sLr~l~l~~s~~~~-~l~~~aP~Le~L~l~~~~~~~l~i-~~p~L~~~~l~i~~~~~~~l  282 (452)
                      ++|.+.++....... -.+++|+.+.+....... .+ -..|+|+.|.+.........+ ..+.|+.+.+.-.+...+.+
T Consensus       151 ~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l-~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  229 (457)
T 3bz5_A          151 TELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDV-SQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDV  229 (457)
T ss_dssp             CEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCC-TTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCC
T ss_pred             CEEECCCCCcccccccccCCcCCEEECCCCccceecc-ccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccCc
Confidence            999997663222222 236788887554322111 12 267889999986543322211 23466665543222233446


Q ss_pred             cccCcccEEEEeeccccccccccccCCceeEEEEEeccC-CCC---ccccccChhHHhhcCCCccEEEEccC
Q 012979          283 QEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKP-GEP---IGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       283 ~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~-~~~---~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .++++|+.|+++...+..+ . ...+++++.|.+.-..- ..+   .... -.++  ...+|+|++|++...
T Consensus       230 ~~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~-~~~~--~~~l~~L~~L~Ls~n  296 (457)
T 3bz5_A          230 TPLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQTDLLEIDLTHNTQL-IYFQ--AEGCRKIKELDVTHN  296 (457)
T ss_dssp             TTCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTCCCSCCCCTTCTTC-CEEE--CTTCTTCCCCCCTTC
T ss_pred             cccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCCCCCEEECCCCccC-Cccc--ccccccCCEEECCCC
Confidence            7788999999986554432 1 34577888876432110 000   0000 0011  356799999998664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.11  E-value=7.7e-07  Score=87.32  Aligned_cols=58  Identities=26%  Similarity=0.277  Sum_probs=28.6

Q ss_pred             cCCCCcEEEeeceeec---C-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          155 CCKSLVELEVKNAWLS---V-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~d---~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      .+++|++|+|.++.+.   . ..+..+|+|++|+|.+..+++..... ++.||+|++|+|.+|
T Consensus        91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~L~~~  152 (336)
T 2ast_B           91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGC  152 (336)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTC
T ss_pred             cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHH-HhcCCCCCEEECCCC
Confidence            4555555665553321   1 12345555666665555554444433 344556666655544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=98.10  E-value=9.5e-06  Score=89.35  Aligned_cols=122  Identities=17%  Similarity=0.074  Sum_probs=71.9

Q ss_pred             cCCceEEEeeecccccccccccccce--ecccCCCCcEEEeeceeec---CCC-CCCCCCCceeeeeeEeecchhHHH--
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAF--ISSCCKSLVELEVKNAWLS---VDN-LNQMPMLTKLTLEFIRLEDEDLDK--  197 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~--~~~~c~~L~~L~L~~~~~d---~~~-l~~fp~Lr~L~L~~v~i~~~~L~~--  197 (452)
                      .+.|++|+|++...      ...+|.  ....|++|++|+|.+..+.   +.. +..+++|++|+|.+..+.+.....  
T Consensus        99 l~~L~~L~Ls~n~l------~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  172 (768)
T 3rgz_A           99 SASLTSLDLSRNSL------SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV  172 (768)
T ss_dssp             CTTCCEEECCSSEE------EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred             CCCCCEEECCCCcC------CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence            46788888874321      112333  3457889999999874332   222 267899999999887776543322  


Q ss_pred             HhccCCcCCeEEEeccccccc-CccccccccEEEeeecC---CcceEEecCCceeEEEeee
Q 012979          198 VNDCFPCLQVLNLVGVGGFRQ-PKIHLLHLKSCLWTVSN---APLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       198 ll~~cP~Le~L~L~~~~g~~~-~~l~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~  254 (452)
                      .+..|+.|++|+|.++.-... +.-.+++|+.+.+....   ....+ -..++|++|++..
T Consensus       173 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l-~~l~~L~~L~Ls~  232 (768)
T 3rgz_A          173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL-GDCSALQHLDISG  232 (768)
T ss_dssp             HTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBC-TTCCSCCEEECCS
T ss_pred             hhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCccc-ccCCCCCEEECcC
Confidence            367788888888866532111 11346677777554221   11122 2567777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.10  E-value=6.4e-06  Score=79.98  Aligned_cols=165  Identities=19%  Similarity=0.169  Sum_probs=94.2

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.|++|.+.+..-       ..++. ...+++|++|+|.+..+ +.+.+..+++|++|+|.+-.+.+  +.. +..+++
T Consensus        45 l~~L~~L~l~~~~i-------~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~  113 (291)
T 1h6t_A           45 LNSIDQIIANNSDI-------KSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKK  113 (291)
T ss_dssp             HHTCCEEECTTSCC-------CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTT
T ss_pred             cCcccEEEccCCCc-------ccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCC--Chh-hccCCC
Confidence            45678888764321       11222 23578888888886433 33347788888888888776654  223 567888


Q ss_pred             CCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccc
Q 012979          205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQE  284 (452)
Q Consensus       205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~  284 (452)
                      |++|+|.++. ....                  ..+. ..|+|+.|++......          .       .  -.+.+
T Consensus       114 L~~L~L~~n~-i~~~------------------~~l~-~l~~L~~L~l~~n~l~----------~-------~--~~l~~  154 (291)
T 1h6t_A          114 LKSLSLEHNG-ISDI------------------NGLV-HLPQLESLYLGNNKIT----------D-------I--TVLSR  154 (291)
T ss_dssp             CCEEECTTSC-CCCC------------------GGGG-GCTTCCEEECCSSCCC----------C-------C--GGGGG
T ss_pred             CCEEECCCCc-CCCC------------------hhhc-CCCCCCEEEccCCcCC----------c-------c--hhhcc
Confidence            8888886542 1111                  0111 4577777777432211          0       0  13455


Q ss_pred             cCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          285 FRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       285 ~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +++|++|+++...+..+.. +..+++++.|.+.-.    ...-    ++. +..+|+|+.|++.+.
T Consensus       155 l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N----~i~~----l~~-l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          155 LTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN----HISD----LRA-LAGLKNLDVLELFSQ  210 (291)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS----CCCB----CGG-GTTCTTCSEEEEEEE
T ss_pred             CCCCCEEEccCCccccchh-hcCCCccCEEECCCC----cCCC----Chh-hccCCCCCEEECcCC
Confidence            6777777777554443322 556777777765221    1111    122 567778888877543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.09  E-value=1.4e-05  Score=78.49  Aligned_cols=34  Identities=18%  Similarity=0.184  Sum_probs=15.8

Q ss_pred             cccCcccEEEEeeccccccccccccCCceeEEEE
Q 012979          283 QEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKV  316 (452)
Q Consensus       283 ~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L  316 (452)
                      .++++|++|+++...+..+...+..+++++.|.+
T Consensus       237 ~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l  270 (330)
T 1xku_A          237 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL  270 (330)
T ss_dssp             GGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEEC
T ss_pred             cCCCCCCEEECCCCcCccCChhhccCCCcCEEEC
Confidence            3445555555554333333233344555555554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.09  E-value=8.2e-06  Score=83.60  Aligned_cols=186  Identities=18%  Similarity=0.159  Sum_probs=108.5

Q ss_pred             CCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc---cccccccEEE
Q 012979          157 KSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK---IHLLHLKSCL  230 (452)
Q Consensus       157 ~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~---l~~~sLr~l~  230 (452)
                      ++++.|+|.+..   +.+..+..+++|++|+|.+-.+..-.. ..+..+++|++|+|.++.-...+.   -.+++|+.+.
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECG-GGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccCh-hhccCCccCCEEECCCCcCCeeCHhHhhccccCceee
Confidence            579999999743   334568899999999999876654322 224669999999997653111111   2367888885


Q ss_pred             eeecCCc---ceEEecCCceeEEEeeeecC-Cc----eeeeCCccceEEEeecccccc-cccccCcccEEEEeecccccc
Q 012979          231 WTVSNAP---LSLAIYAPNLVKLELRCVKP-KS----LVLQTPLLHDFCLSLEVANEI-RFQEFRNLMNLQLESSSLSSL  301 (452)
Q Consensus       231 l~~s~~~---~~l~~~aP~Le~L~l~~~~~-~~----l~i~~p~L~~~~l~i~~~~~~-~l~~~~~L~~L~l~~~~~~~~  301 (452)
                      +.-....   ....-..|+|++|++..... ..    ..-..+.|+.+.+.-.+...+ .+.++.+|++|+++...+..+
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  222 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAI  222 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEE
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCcc
Confidence            5422111   11112568999999864211 10    011233555544321111111 345667888888876544332


Q ss_pred             -ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          302 -INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       302 -~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                       ...+..+++|++|.+.-.    .....   .+..+..+|+|++|+|...
T Consensus       223 ~~~~~~~l~~L~~L~L~~n----~l~~~---~~~~~~~l~~L~~L~L~~N  265 (440)
T 3zyj_A          223 RPGSFQGLMHLQKLWMIQS----QIQVI---ERNAFDNLQSLVEINLAHN  265 (440)
T ss_dssp             CTTTTTTCTTCCEEECTTC----CCCEE---CTTSSTTCTTCCEEECTTS
T ss_pred             ChhhhccCccCCEEECCCC----ceeEE---ChhhhcCCCCCCEEECCCC
Confidence             234566788888775321    11111   1345678899999999764

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=98.08  E-value=8.2e-06  Score=83.37  Aligned_cols=101  Identities=20%  Similarity=0.182  Sum_probs=67.3

Q ss_pred             cCCceEEEeeeccccccccccccc-ceecccCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHH-HHhc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVL-AFISSCCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLD-KVND  200 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L-~~~~~~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~-~ll~  200 (452)
                      .+.|+.|++.+...      ...+ +....++++|++|+|++..   +.+..+..+++|++|+|.+..+++..+. ..+.
T Consensus        53 l~~L~~L~L~~n~~------~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  126 (455)
T 3v47_A           53 LQDLQFLKVEQQTP------GLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK  126 (455)
T ss_dssp             CTTCCEEECCCCST------TCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTT
T ss_pred             CccccEEECcCCcc------cceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCccccc
Confidence            56799999974311      1112 2224468999999999742   2345688999999999998887754433 3357


Q ss_pred             cCCcCCeEEEeccccccc-Cc---cccccccEEEee
Q 012979          201 CFPCLQVLNLVGVGGFRQ-PK---IHLLHLKSCLWT  232 (452)
Q Consensus       201 ~cP~Le~L~L~~~~g~~~-~~---l~~~sLr~l~l~  232 (452)
                      .+++|++|+|.++.-... +.   -.+++|+.+.+.
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  162 (455)
T 3v47_A          127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT  162 (455)
T ss_dssp             TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT
T ss_pred             CcccCCEEECCCCccCccCcccccCCCCcccEEeCC
Confidence            799999999976532211 21   246788888553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.07  E-value=3e-06  Score=90.09  Aligned_cols=59  Identities=27%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             ccCCCCcEEEeeceee-c-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          154 SCCKSLVELEVKNAWL-S-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ..+++|++|+|.+..+ . ++.+..+++|++|+|.+..+.+..- ..++.+|.|++|.|.++
T Consensus       275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n  335 (606)
T 3t6q_A          275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ-ISASNFPSLTHLSIKGN  335 (606)
T ss_dssp             TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG-GCGGGCTTCSEEECCSC
T ss_pred             ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch-hhhhccCcCCEEECCCC
Confidence            3466777777775322 2 2345666777777776655543211 12345677777777554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.06  E-value=5.5e-06  Score=88.05  Aligned_cols=119  Identities=18%  Similarity=-0.040  Sum_probs=65.4

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c----CCCCCCCCCCceeeeeeEeecchhHHHHh
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S----VDNLNQMPMLTKLTLEFIRLEDEDLDKVN  199 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d----~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll  199 (452)
                      ..+.|++|++.+....      ..  .....+++|+.|+|.+..+ .    +..+..+++|++|+|.+-.+..-.  ..+
T Consensus       326 ~l~~L~~L~l~~n~~~------~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~  395 (606)
T 3vq2_A          326 DLPFLKSLTLTMNKGS------IS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS--ANF  395 (606)
T ss_dssp             CCSSCCEEEEESCSSC------EE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC--CCC
T ss_pred             CCCccceeeccCCcCc------cc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch--hhc
Confidence            3567888888643110      01  1233577888888886322 1    223567788888888776554322  334


Q ss_pred             ccCCcCCeEEEecccccccC---c-cccccccEEEeeecC----CcceEEecCCceeEEEeee
Q 012979          200 DCFPCLQVLNLVGVGGFRQP---K-IHLLHLKSCLWTVSN----APLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       200 ~~cP~Le~L~L~~~~g~~~~---~-l~~~sLr~l~l~~s~----~~~~l~~~aP~Le~L~l~~  254 (452)
                      ..++.|++|.|.++.-...+   . -.+++|+.+.+.-..    .+..+ -..++|++|++..
T Consensus       396 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~  457 (606)
T 3vq2_A          396 MGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLKMAG  457 (606)
T ss_dssp             TTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT-TTCTTCCEEECTT
T ss_pred             cCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh-cCCCCCCEEECCC
Confidence            56888888888654211111   1 235677777443211    11112 2567888888743

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.06  E-value=1.1e-05  Score=84.82  Aligned_cols=209  Identities=19%  Similarity=0.174  Sum_probs=122.7

Q ss_pred             CceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecch-hHHHHhccCCcC
Q 012979          128 ELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDE-DLDKVNDCFPCL  205 (452)
Q Consensus       128 ~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~-~L~~ll~~cP~L  205 (452)
                      .+++|++.+...       ..+|.  ..+++|++|++.+... .......+|+|++|+|.+-.+... .+...+..+|.|
T Consensus       305 ~L~~L~l~~n~~-------~~l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L  375 (570)
T 2z63_A          305 GWQHLELVNCKF-------GQFPT--LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL  375 (570)
T ss_dssp             CCSEEEEESCBC-------SSCCB--CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC
T ss_pred             CccEEeeccCcc-------cccCc--ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCcc
Confidence            788888864321       12333  3578899999987432 222337889999999987666532 112334668999


Q ss_pred             CeEEEecccccccC--ccccccccEEEeeec---CC-cceEEecCCceeEEEeeeecCCc----eeeeCCccceEEEeec
Q 012979          206 QVLNLVGVGGFRQP--KIHLLHLKSCLWTVS---NA-PLSLAIYAPNLVKLELRCVKPKS----LVLQTPLLHDFCLSLE  275 (452)
Q Consensus       206 e~L~L~~~~g~~~~--~l~~~sLr~l~l~~s---~~-~~~l~~~aP~Le~L~l~~~~~~~----l~i~~p~L~~~~l~i~  275 (452)
                      ++|+|.++.-...+  --.+++|+.+.+.-.   .. ........++|++|++.......    ..-..+.|+.+.+.-.
T Consensus       376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            99999765321111  123667888754321   11 11122367889999885432111    0112345565543211


Q ss_pred             c-----cccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979          276 V-----ANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP  349 (452)
Q Consensus       276 ~-----~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~  349 (452)
                      .     .| ..+.++++|++|+++...+..+ ...+..+++++.|.+.-.. ...   .   ++..+..+|+|++|++.+
T Consensus       456 ~l~~~~~p-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~---~---~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          456 SFQENFLP-DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKS---V---PDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             EEGGGEEC-SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSC---C---CTTTTTTCTTCCEEECCS
T ss_pred             cCccccch-hhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc-CCC---C---CHHHhhcccCCcEEEecC
Confidence            1     11 2456788999999986555433 3445678999998863221 111   1   235678899999999988


Q ss_pred             Cchh
Q 012979          350 RAWS  353 (452)
Q Consensus       350 ~~~~  353 (452)
                      ..+.
T Consensus       528 N~~~  531 (570)
T 2z63_A          528 NPWD  531 (570)
T ss_dssp             SCBC
T ss_pred             Cccc
Confidence            7554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.04  E-value=1e-05  Score=83.18  Aligned_cols=186  Identities=16%  Similarity=0.158  Sum_probs=109.3

Q ss_pred             CCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc--c-ccccccEEE
Q 012979          157 KSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK--I-HLLHLKSCL  230 (452)
Q Consensus       157 ~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~--l-~~~sLr~l~  230 (452)
                      ++|+.|+|.+..   +.+..+..+++|++|+|.+-.+..-.- ..+..+++|++|+|.++.-...+.  + .+++|+.+.
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcCh-hhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            589999999743   334568899999999999876654222 224669999999997653211111  2 267888885


Q ss_pred             eeecCCc---ceEEecCCceeEEEeeeecC-Cce----eeeCCccceEEEeecccccc-cccccCcccEEEEeecccccc
Q 012979          231 WTVSNAP---LSLAIYAPNLVKLELRCVKP-KSL----VLQTPLLHDFCLSLEVANEI-RFQEFRNLMNLQLESSSLSSL  301 (452)
Q Consensus       231 l~~s~~~---~~l~~~aP~Le~L~l~~~~~-~~l----~i~~p~L~~~~l~i~~~~~~-~l~~~~~L~~L~l~~~~~~~~  301 (452)
                      +.-....   ....-..|+|++|++..... ...    .-..+.|+.+.+.-.+...+ .+.++.+|++|+++...+..+
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~  233 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI  233 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEE
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCccc
Confidence            5422211   11112578999999864211 110    11233555554421111111 345677888888876554332


Q ss_pred             -ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          302 -INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       302 -~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                       ...+..++++++|.+.-.    ....  + .+..+..+|+|+.|++...
T Consensus       234 ~~~~~~~l~~L~~L~L~~n----~l~~--~-~~~~~~~l~~L~~L~L~~N  276 (452)
T 3zyi_A          234 RPGSFHGLSSLKKLWVMNS----QVSL--I-ERNAFDGLASLVELNLAHN  276 (452)
T ss_dssp             CGGGGTTCTTCCEEECTTS----CCCE--E-CTTTTTTCTTCCEEECCSS
T ss_pred             CcccccCccCCCEEEeCCC----cCce--E-CHHHhcCCCCCCEEECCCC
Confidence             334566788888775211    1111  1 1345678899999999765

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=98.04  E-value=1.9e-05  Score=83.91  Aligned_cols=209  Identities=17%  Similarity=0.124  Sum_probs=113.0

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec---CCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS---VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d---~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      +.|++|++.+..-       ..+|.....+++|++|+|.+..+.   +..+..+++|++|+|.+-.+....-...+..+|
T Consensus       278 ~~L~~L~l~~n~l-------~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~  350 (606)
T 3t6q_A          278 SGLQELDLTATHL-------SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE  350 (606)
T ss_dssp             TTCSEEECTTSCC-------SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred             cCCCEEeccCCcc-------CCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence            4566666643211       124444456788999999874332   235678899999999876554222222345689


Q ss_pred             cCCeEEEeccccccc---C-c-cccccccEEEeeecCC----cceEEecCCceeEEEeeeecCCce-----eeeCCccce
Q 012979          204 CLQVLNLVGVGGFRQ---P-K-IHLLHLKSCLWTVSNA----PLSLAIYAPNLVKLELRCVKPKSL-----VLQTPLLHD  269 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~---~-~-l~~~sLr~l~l~~s~~----~~~l~~~aP~Le~L~l~~~~~~~l-----~i~~p~L~~  269 (452)
                      +|++|+|.++.-...   + . -.+++|+.+.+.....    ...+ ...|+|++|++........     .-..+.|+.
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  429 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV  429 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTT-TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHh-cCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence            999999976531111   1 1 2356788875532211    1112 2568888888753321100     112334555


Q ss_pred             EEEeecc---cccccccccCcccEEEEeeccccc----cccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCc
Q 012979          270 FCLSLEV---ANEIRFQEFRNLMNLQLESSSLSS----LINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNL  342 (452)
Q Consensus       270 ~~l~i~~---~~~~~l~~~~~L~~L~l~~~~~~~----~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL  342 (452)
                      +.+.-..   .+.-.+.++++|++|+++...+..    ....+..+++++.|.+.-.. ..+     + ++..+..+|+|
T Consensus       430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~-----~-~~~~~~~l~~L  502 (606)
T 3t6q_A          430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSS-----I-DQHAFTSLKMM  502 (606)
T ss_dssp             EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCE-----E-CTTTTTTCTTC
T ss_pred             EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCc-----c-ChhhhccccCC
Confidence            4432111   112234567788888887544322    11334567788887752111 110     1 13456778888


Q ss_pred             cEEEEccC
Q 012979          343 SSLTLGPR  350 (452)
Q Consensus       343 ~~L~I~~~  350 (452)
                      ++|++...
T Consensus       503 ~~L~Ls~N  510 (606)
T 3t6q_A          503 NHVDLSHN  510 (606)
T ss_dssp             CEEECCSS
T ss_pred             CEEECCCC
Confidence            88888664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.03  E-value=9.3e-06  Score=86.23  Aligned_cols=17  Identities=18%  Similarity=0.194  Sum_probs=10.6

Q ss_pred             HHhhcCCCccEEEEccC
Q 012979          334 VLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       334 ~lL~~~PnL~~L~I~~~  350 (452)
                      ..+..+|+|++|+|...
T Consensus       515 ~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          515 SHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             GGTTTCTTCCEEECTTS
T ss_pred             HHccCCCcCCEEECCCC
Confidence            45566677777777543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.03  E-value=1.7e-05  Score=77.43  Aligned_cols=166  Identities=19%  Similarity=0.141  Sum_probs=101.5

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..+.|++|++++..-       ..++. ...+++|+.|+|++..+ +.+.+..+++|++|+|.+..+.+-  .. +..+|
T Consensus        61 ~l~~L~~L~L~~n~i-------~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~-l~~l~  129 (308)
T 1h6u_A           61 YLNNLIGLELKDNQI-------TDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDV--TP-LAGLS  129 (308)
T ss_dssp             GCTTCCEEECCSSCC-------CCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCCC--GG-GTTCT
T ss_pred             ccCCCCEEEccCCcC-------CCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCCCCCc--hh-hcCCC
Confidence            357889999874321       11222 44688999999997433 445678899999999988777652  22 57799


Q ss_pred             cCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccc
Q 012979          204 CLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQ  283 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~  283 (452)
                      +|++|+|.++. ....                 .. +. ..++|+.|++.....                 ...+  .+.
T Consensus       130 ~L~~L~l~~n~-l~~~-----------------~~-l~-~l~~L~~L~l~~n~l-----------------~~~~--~l~  170 (308)
T 1h6u_A          130 NLQVLYLDLNQ-ITNI-----------------SP-LA-GLTNLQYLSIGNAQV-----------------SDLT--PLA  170 (308)
T ss_dssp             TCCEEECCSSC-CCCC-----------------GG-GG-GCTTCCEEECCSSCC-----------------CCCG--GGT
T ss_pred             CCCEEECCCCc-cCcC-----------------cc-cc-CCCCccEEEccCCcC-----------------CCCh--hhc
Confidence            99999997642 1110                 00 11 557777777743211                 1111  155


Q ss_pred             ccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          284 EFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      ++++|++|+++...+..+. .+..+++++.|.+.-.    ...-    ++. +..+|+|+.|++...
T Consensus       171 ~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~N----~l~~----~~~-l~~l~~L~~L~l~~N  227 (308)
T 1h6u_A          171 NLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNN----QISD----VSP-LANTSNLFIVTLTNQ  227 (308)
T ss_dssp             TCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTS----CCCB----CGG-GTTCTTCCEEEEEEE
T ss_pred             CCCCCCEEECCCCccCcCh-hhcCCCCCCEEEccCC----ccCc----ccc-ccCCCCCCEEEccCC
Confidence            6778888888765444322 2556788888775221    1111    112 577888888888664

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.02  E-value=5.7e-06  Score=75.30  Aligned_cols=144  Identities=9%  Similarity=0.166  Sum_probs=81.8

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL  205 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L  205 (452)
                      +.+++|.+.+..-       ..++ ....+++|++|+|.++.+ +.+.+..+++|++|+|.+..+.+..... ++.+|+|
T Consensus        44 ~~L~~L~l~~n~i-------~~l~-~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L  114 (197)
T 4ezg_A           44 NSLTYITLANINV-------TDLT-GIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSL  114 (197)
T ss_dssp             HTCCEEEEESSCC-------SCCT-TGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCC-CTTCTTC
T ss_pred             CCccEEeccCCCc-------cChH-HHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChh-hcCCCCC
Confidence            4677888864321       1233 234577888888887533 3456778888888888887776544433 4668888


Q ss_pred             CeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccccc
Q 012979          206 QVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEF  285 (452)
Q Consensus       206 e~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~  285 (452)
                      ++|+|.++. .....                ...+. ..|+|+.|++.....                ++..+  .+.++
T Consensus       115 ~~L~Ls~n~-i~~~~----------------~~~l~-~l~~L~~L~L~~n~~----------------i~~~~--~l~~l  158 (197)
T 4ezg_A          115 TLLDISHSA-HDDSI----------------LTKIN-TLPKVNSIDLSYNGA----------------ITDIM--PLKTL  158 (197)
T ss_dssp             CEEECCSSB-CBGGG----------------HHHHT-TCSSCCEEECCSCTB----------------CCCCG--GGGGC
T ss_pred             CEEEecCCc-cCcHh----------------HHHHh-hCCCCCEEEccCCCC----------------ccccH--hhcCC
Confidence            888886542 11100                00111 456777777643210                01111  34556


Q ss_pred             CcccEEEEeeccccccccccccCCceeEEEE
Q 012979          286 RNLMNLQLESSSLSSLINTFPFGKTIKKLKV  316 (452)
Q Consensus       286 ~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L  316 (452)
                      ++|+.|+++...+.. +..+..+++++.|.+
T Consensus       159 ~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l  188 (197)
T 4ezg_A          159 PELKSLNIQFDGVHD-YRGIEDFPKLNQLYA  188 (197)
T ss_dssp             SSCCEEECTTBCCCC-CTTGGGCSSCCEEEE
T ss_pred             CCCCEEECCCCCCcC-hHHhccCCCCCEEEe
Confidence            677777776544433 224455677777665

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=98.02  E-value=1.3e-05  Score=77.00  Aligned_cols=170  Identities=18%  Similarity=0.115  Sum_probs=100.2

Q ss_pred             CCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccccccc--Cc--cccccccE
Q 012979          156 CKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQ--PK--IHLLHLKS  228 (452)
Q Consensus       156 c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~--~~--l~~~sLr~  228 (452)
                      .++|++|+|.+..+   .+..+..+++|++|+|.+..+.+-.- ..++.+|.|++|+|.++.....  +.  -.+++|+.
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~  109 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT  109 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH-hhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence            35899999997433   23457899999999998876653221 2246699999999977531211  11  22556666


Q ss_pred             EEeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccccc-c
Q 012979          229 CLWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLIN-T  304 (452)
Q Consensus       229 l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-l  304 (452)
                      +.+.-..   ......-..++|++|++....                 +...+.-.+.++++|++|+++...+..+.. .
T Consensus       110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  172 (285)
T 1ozn_A          110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNA-----------------LQALPDDTFRDLGNLTHLFLHGNRISSVPERA  172 (285)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSC-----------------CCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             EECCCCcCCEECHhHhhCCcCCCEEECCCCc-----------------ccccCHhHhccCCCccEEECCCCcccccCHHH
Confidence            6443211   111111145666666663221                 111122235678899999998655543332 3


Q ss_pred             cccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          305 FPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       305 ~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +..+++++.|.+.-... .+     + .+..+..+|+|++|++...
T Consensus       173 ~~~l~~L~~L~l~~n~l-~~-----~-~~~~~~~l~~L~~L~l~~n  211 (285)
T 1ozn_A          173 FRGLHSLDRLLLHQNRV-AH-----V-HPHAFRDLGRLMTLYLFAN  211 (285)
T ss_dssp             TTTCTTCCEEECCSSCC-CE-----E-CTTTTTTCTTCCEEECCSS
T ss_pred             hcCccccCEEECCCCcc-cc-----c-CHhHccCcccccEeeCCCC
Confidence            56688999988632211 11     1 1355678899999999764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.01  E-value=8.3e-06  Score=87.70  Aligned_cols=77  Identities=13%  Similarity=0.078  Sum_probs=53.3

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      ...|++|.+.+..-       ..++. ...|++|+.|+|.+..+ +.+.+..+++|++|+|.+-.+.+-  . -+..+|+
T Consensus        42 L~~L~~L~l~~n~i-------~~l~~-l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~  110 (605)
T 1m9s_A           42 LNSIDQIIANNSDI-------KSVQG-IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKK  110 (605)
T ss_dssp             HTTCCCCBCTTCCC-------CCCTT-GGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTT
T ss_pred             CCCCCEEECcCCCC-------CCChH-HccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCC
Confidence            46788888864321       12232 34688999999987433 444578899999999988777652  2 2577999


Q ss_pred             CCeEEEecc
Q 012979          205 LQVLNLVGV  213 (452)
Q Consensus       205 Le~L~L~~~  213 (452)
                      |++|+|.++
T Consensus       111 L~~L~Ls~N  119 (605)
T 1m9s_A          111 LKSLSLEHN  119 (605)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEEecCC
Confidence            999999765

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.97  E-value=7.5e-07  Score=89.63  Aligned_cols=88  Identities=17%  Similarity=0.082  Sum_probs=59.6

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec------CCC-------CCCCCCCceeeeeeEeec
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS------VDN-------LNQMPMLTKLTLEFIRLE  191 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d------~~~-------l~~fp~Lr~L~L~~v~i~  191 (452)
                      ..+.|++|+|++.....  .....++.....+++|++|+|.++.+.      +.+       +..+++|++|+|.+..+.
T Consensus        30 ~~~~L~~L~L~~n~i~~--~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~  107 (386)
T 2ca6_A           30 EDDSVKEIVLSGNTIGT--EAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG  107 (386)
T ss_dssp             HCSCCCEEECTTSEECH--HHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred             cCCCccEEECCCCCCCH--HHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence            35789999997432110  001123333446899999999875332      112       267899999999998888


Q ss_pred             ch---hHHHHhccCCcCCeEEEeccc
Q 012979          192 DE---DLDKVNDCFPCLQVLNLVGVG  214 (452)
Q Consensus       192 ~~---~L~~ll~~cP~Le~L~L~~~~  214 (452)
                      +.   .+...+..||+|++|+|.+|.
T Consensus       108 ~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          108 PTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             HHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            75   355567889999999997653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.96  E-value=1.2e-05  Score=86.64  Aligned_cols=17  Identities=24%  Similarity=0.450  Sum_probs=10.6

Q ss_pred             cCCCccEEEEccCchhh
Q 012979          338 VFPNLSSLTLGPRAWSA  354 (452)
Q Consensus       338 ~~PnL~~L~I~~~~~~~  354 (452)
                      .+|+|++|++.+..|.+
T Consensus       607 ~~~~L~~l~l~~N~~~c  623 (680)
T 1ziw_A          607 AFRNLTELDMRFNPFDC  623 (680)
T ss_dssp             HHTTCSEEECTTCCCCB
T ss_pred             cccccCEEEccCCCccc
Confidence            56677777776655543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=97.94  E-value=1.1e-05  Score=78.07  Aligned_cols=191  Identities=16%  Similarity=0.068  Sum_probs=96.7

Q ss_pred             CCceEEEeeecccccccccccccce-ecccCCCCcEEEeeceeec-----CCCCCCCCCCceeeeeeEeecchhHHHHhc
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNAWLS-----VDNLNQMPMLTKLTLEFIRLEDEDLDKVND  200 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~~~d-----~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~  200 (452)
                      +.+++|++++..-       ..+|. ....+++|++|+|.+..+.     +.....+++|++|+|.+..+..  +..-+.
T Consensus        28 ~~l~~L~L~~n~l-------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~   98 (306)
T 2z66_A           28 SSATRLELESNKL-------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFL   98 (306)
T ss_dssp             TTCCEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEE
T ss_pred             CCCCEEECCCCcc-------CccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcC
Confidence            5677887764321       11222 1235677888888763221     1233457888888887665542  111245


Q ss_pred             cCCcCCeEEEecccccccC---c-cccccccEEEeeecCC---cceEEecCCceeEEEeeeecCCceeeeCCccceEEEe
Q 012979          201 CFPCLQVLNLVGVGGFRQP---K-IHLLHLKSCLWTVSNA---PLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLS  273 (452)
Q Consensus       201 ~cP~Le~L~L~~~~g~~~~---~-l~~~sLr~l~l~~s~~---~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~  273 (452)
                      .+++|++|+|.++.-...+   . -.+++|+.+.+.-...   .....-..++|++|.+....                 
T Consensus        99 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----------------  161 (306)
T 2z66_A           99 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-----------------  161 (306)
T ss_dssp             TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCE-----------------
T ss_pred             CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCc-----------------
Confidence            6788888888654211111   1 2245566553321110   00001134556666553211                 


Q ss_pred             ecc-cccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          274 LEV-ANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       274 i~~-~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +.. .....+.++++|++|+++...+..+ ...+..+++++.|.+.-.. ...     + .+..+..+|+|+.|++...
T Consensus       162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~-----~-~~~~~~~l~~L~~L~L~~N  233 (306)
T 2z66_A          162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFS-----L-DTFPYKCLNSLQVLDYSLN  233 (306)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSB-----C-CSGGGTTCTTCCEEECTTS
T ss_pred             cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCc-----c-ChhhccCcccCCEeECCCC
Confidence            000 0012345677888888876544433 2345567888887753211 111     1 1234577888999988654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.93  E-value=5.2e-05  Score=84.35  Aligned_cols=61  Identities=18%  Similarity=0.158  Sum_probs=32.9

Q ss_pred             cccCCCCcEEEeeceeec---CCC--CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          153 SSCCKSLVELEVKNAWLS---VDN--LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       153 ~~~c~~L~~L~L~~~~~d---~~~--l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ..++++|++|+|.+..+.   +..  +..+++|++|+|.+-.+........++.+++|++|+|.++
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence            335666666666653221   111  5566666666666655544333333455666666666543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=97.93  E-value=2.2e-05  Score=76.85  Aligned_cols=229  Identities=13%  Similarity=0.056  Sum_probs=125.3

Q ss_pred             cccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEE
Q 012979          153 SSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSC  229 (452)
Q Consensus       153 ~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l  229 (452)
                      ...+++|++|+|.+..+ +.  ..+..+++|++|+|.+-.+.+..  . +..+|+|++|+|.++. .... -..++|+.+
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l-~~~~~L~~L  104 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQEL-LVGPSIETL  104 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEE-EECTTCCEE
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-cccc-cCCCCcCEE
Confidence            34577999999997543 22  24789999999999887665321  1 6779999999997653 2111 124788888


Q ss_pred             EeeecCCcceEEecCCceeEEEeeeecCCce----eeeCCccceEEEeeccc----ccccccccCcccEEEEeecccccc
Q 012979          230 LWTVSNAPLSLAIYAPNLVKLELRCVKPKSL----VLQTPLLHDFCLSLEVA----NEIRFQEFRNLMNLQLESSSLSSL  301 (452)
Q Consensus       230 ~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~i~~~----~~~~l~~~~~L~~L~l~~~~~~~~  301 (452)
                      .+.............++|++|++........    .-..+.|+.+.+.-...    +.....++.+|++|+++...+..+
T Consensus       105 ~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~  184 (317)
T 3o53_A          105 HAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV  184 (317)
T ss_dssp             ECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred             ECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence            5543333333334568899999864432211    01123444443321111    111123567888888875444332


Q ss_pred             ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhhhhhccccCccccccccccceeEEEEEe
Q 012979          302 INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAVQSNFDKGRLEIRTEMKVLKEIIARLV  381 (452)
Q Consensus       302 ~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~~~~~~~~~~~~~~~~~~~lk~lv~~~~  381 (452)
                       .....+++++.|.+.-.    ....    ++.-+..+|+|+.|++.......+    ..    .....+.++.+.+.  
T Consensus       185 -~~~~~l~~L~~L~Ls~N----~l~~----l~~~~~~l~~L~~L~L~~N~l~~l----~~----~~~~l~~L~~L~l~--  245 (317)
T 3o53_A          185 -KGQVVFAKLKTLDLSSN----KLAF----MGPEFQSAAGVTWISLRNNKLVLI----EK----ALRFSQNLEHFDLR--  245 (317)
T ss_dssp             -ECCCCCTTCCEEECCSS----CCCE----ECGGGGGGTTCSEEECTTSCCCEE----CT----TCCCCTTCCEEECT--
T ss_pred             -ccccccccCCEEECCCC----cCCc----chhhhcccCcccEEECcCCcccch----hh----HhhcCCCCCEEEcc--
Confidence             22224678888775321    1111    122366789999999966522211    10    01123566665332  


Q ss_pred             ecCCcchhHHHHHHHhcccccccEEE
Q 012979          382 VDDISVTRSFIFAIMNICSNLSDMAL  407 (452)
Q Consensus       382 ~~~~~~~~~fl~~ll~~a~~L~~m~i  407 (452)
                       +| .-....+...+...+.|+.+.+
T Consensus       246 -~N-~~~~~~~~~~~~~~~~L~~l~l  269 (317)
T 3o53_A          246 -GN-GFHCGTLRDFFSKNQRVQTVAK  269 (317)
T ss_dssp             -TC-CCBHHHHHHHHHTCHHHHHHHH
T ss_pred             -CC-CccCcCHHHHHhccccceEEEC
Confidence             32 3333345555566666665544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.92  E-value=2.1e-05  Score=77.23  Aligned_cols=207  Identities=14%  Similarity=0.105  Sum_probs=102.1

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      +.++.|++.+..-      ....+.....+++|++|+|.+..+   .+..+..+++|++|+|.+-.+..  +..  ...+
T Consensus        54 ~~l~~L~l~~n~i------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~--~~~~  123 (332)
T 2ft3_A           54 PDTTLLDLQNNDI------SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPP--NLPS  123 (332)
T ss_dssp             TTCCEEECCSSCC------CEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCS--SCCT
T ss_pred             CCCeEEECCCCcC------CccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCc--cccc
Confidence            5677777763311      011121234577788888876322   23456777888888887665542  111  1127


Q ss_pred             cCCeEEEecccccccCc---cccccccEEEeeecCCc----ceEEecCCceeEEEeeeecCCceeee-CCccceEEEee-
Q 012979          204 CLQVLNLVGVGGFRQPK---IHLLHLKSCLWTVSNAP----LSLAIYAPNLVKLELRCVKPKSLVLQ-TPLLHDFCLSL-  274 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~~~---l~~~sLr~l~l~~s~~~----~~l~~~aP~Le~L~l~~~~~~~l~i~-~p~L~~~~l~i-  274 (452)
                      .|++|.|.++.-...+.   -.+++|+.+.+.-....    ..-.....+|+.|.+.......+-.. .+.|+.+.+.- 
T Consensus       124 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n  203 (332)
T 2ft3_A          124 SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHN  203 (332)
T ss_dssp             TCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSS
T ss_pred             cCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCC
Confidence            78888886543111111   12566666644321110    00011112566666543321111000 12344433321 


Q ss_pred             --cccccccccccCcccEEEEeeccccccc-cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCc
Q 012979          275 --EVANEIRFQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRA  351 (452)
Q Consensus       275 --~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~  351 (452)
                        ...+...+.++.+|+.|+++...+..+. ..+..+++++.|.+.-..    ..    .++.-+..+|+|++|++....
T Consensus       204 ~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~----l~----~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          204 KIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK----LS----RVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSC----CC----BCCTTGGGCTTCCEEECCSSC
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCc----Ce----ecChhhhcCccCCEEECCCCC
Confidence              1112223556778888888754443322 234567888887753221    11    123446788899999887653

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=97.90  E-value=3.9e-05  Score=80.30  Aligned_cols=60  Identities=15%  Similarity=0.165  Sum_probs=32.7

Q ss_pred             ccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCc
Q 012979          284 EFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRA  351 (452)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~  351 (452)
                      ++++|++|+++...+..+.. ....++++.|.+.-.    .....   ++..+..+++|+.|++.+..
T Consensus       449 ~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N----~l~~~---~~~~~~~l~~L~~L~l~~N~  508 (549)
T 2z81_A          449 FLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRN----QLKSV---PDGIFDRLTSLQKIWLHTNP  508 (549)
T ss_dssp             CCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSS----CCCCC---CTTGGGGCTTCCEEECCSSC
T ss_pred             cCChhcEEECCCCccCcCCC-cccCccCCEEecCCC----ccCCc---CHHHHhcCcccCEEEecCCC
Confidence            56677777777544433222 234667777665321    11111   23456677777777776553

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=97.90  E-value=8.4e-06  Score=81.89  Aligned_cols=122  Identities=11%  Similarity=0.135  Sum_probs=71.8

Q ss_pred             HHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeeccccccccc--ccc---
Q 012979           74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRK--SEV---  148 (452)
Q Consensus        74 v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~--~~~---  148 (452)
                      +...+...+.++.|+|..+      .+       .+.   .+..+...+. ..+.|++|.|++..... ...  +..   
T Consensus        24 l~~~l~~~~~L~~L~L~~n------~i-------~~~---~~~~l~~~l~-~~~~L~~L~Ls~~~~~~-l~~~~~~~~~~   85 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGN------TI-------GTE---AARWLSENIA-SKKDLEIAEFSDIFTGR-VKDEIPEALRL   85 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTS------EE-------CHH---HHHHHHHTTT-TCTTCCEEECCSCCTTS-CGGGSHHHHHH
T ss_pred             HHHHHhcCCCccEEECCCC------CC-------CHH---HHHHHHHHHH-hCCCccEEeCcccccCc-cccchhHHHHH
Confidence            4445666788999988732      11       000   0112222221 25789999997531100 000  001   


Q ss_pred             cceecccCCCCcEEEeeceeecCC-------CCCCCCCCceeeeeeEeecch---hHHHHhccC---------CcCCeEE
Q 012979          149 LAFISSCCKSLVELEVKNAWLSVD-------NLNQMPMLTKLTLEFIRLEDE---DLDKVNDCF---------PCLQVLN  209 (452)
Q Consensus       149 L~~~~~~c~~L~~L~L~~~~~d~~-------~l~~fp~Lr~L~L~~v~i~~~---~L~~ll~~c---------P~Le~L~  209 (452)
                      +......|++|++|+|++..+...       .+..+++|++|+|.+..+.+.   .+...+..+         |.|++|+
T Consensus        86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~  165 (386)
T 2ca6_A           86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII  165 (386)
T ss_dssp             HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred             HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence            111224688999999997544332       246789999999998888643   444545555         9999999


Q ss_pred             Eecc
Q 012979          210 LVGV  213 (452)
Q Consensus       210 L~~~  213 (452)
                      |.++
T Consensus       166 L~~n  169 (386)
T 2ca6_A          166 CGRN  169 (386)
T ss_dssp             CCSS
T ss_pred             CCCC
Confidence            9765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.89  E-value=1.8e-05  Score=85.23  Aligned_cols=205  Identities=11%  Similarity=0.043  Sum_probs=102.5

Q ss_pred             CCceEEEeeecccccccccccccce--ecccCCCCcEEEeece-ee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAF--ISSCCKSLVELEVKNA-WL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~--~~~~c~~L~~L~L~~~-~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      +.|++|++.+...      . .+|.  ....+++|+.|+|.+. +- ..+.+..+++|++|+|.+-.+.  .+..-+..+
T Consensus       305 ~~L~~L~L~~n~l------~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~--~lp~~l~~l  375 (636)
T 4eco_A          305 EKIQIIYIGYNNL------K-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT--EIPANFCGF  375 (636)
T ss_dssp             GTCCEEECCSSCC------S-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE--ECCTTSEEE
T ss_pred             CCCCEEECCCCcC------C-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc--cccHhhhhh
Confidence            5566666653211      1 3444  3446777888888763 22 2345667778888888766655  332335667


Q ss_pred             Cc-CCeEEEecccccccCc----cccccccEEEeeecCC----cceEE------ecCCceeEEEeeeecCCce----eee
Q 012979          203 PC-LQVLNLVGVGGFRQPK----IHLLHLKSCLWTVSNA----PLSLA------IYAPNLVKLELRCVKPKSL----VLQ  263 (452)
Q Consensus       203 P~-Le~L~L~~~~g~~~~~----l~~~sLr~l~l~~s~~----~~~l~------~~aP~Le~L~l~~~~~~~l----~i~  263 (452)
                      +. |++|+|.++.-...+.    ..+++|+.+.+.....    +..+.      ...++|++|++.......+    .-.
T Consensus       376 ~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~  455 (636)
T 4eco_A          376 TEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST  455 (636)
T ss_dssp             CTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred             cccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence            88 8888886653222222    1233567664432211    11111      1456788888754332211    001


Q ss_pred             CCccceEEEee---ccccccccc-------ccCcccEEEEeeccccccccccc--cCCceeEEEEEeccCCCCccccccC
Q 012979          264 TPLLHDFCLSL---EVANEIRFQ-------EFRNLMNLQLESSSLSSLINTFP--FGKTIKKLKVELLKPGEPIGMKNLN  331 (452)
Q Consensus       264 ~p~L~~~~l~i---~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~l~~--~~p~lkkL~L~~~~~~~~~~~l~~d  331 (452)
                      .+.|+.+.+.-   ...|.-.+.       ++.+|++|+++...+..+...+.  .+++++.|.+.-... ..       
T Consensus       456 l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l-~~-------  527 (636)
T 4eco_A          456 GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SK-------  527 (636)
T ss_dssp             TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC-SS-------
T ss_pred             CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC-CC-------
Confidence            34555554421   111211111       12278888887654443333333  577788776532110 00       


Q ss_pred             hhHHhhcCCCccEEEEc
Q 012979          332 LGVLFDVFPNLSSLTLG  348 (452)
Q Consensus       332 l~~lL~~~PnL~~L~I~  348 (452)
                      ++.-+..+++|++|++.
T Consensus       528 ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          528 FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             CCCGGGGCSSCCEEECC
T ss_pred             cChhhhcCCCCCEEECC
Confidence            13334456777777763

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=97.88  E-value=4.1e-05  Score=82.48  Aligned_cols=15  Identities=27%  Similarity=0.111  Sum_probs=9.8

Q ss_pred             hccCCcCCeEEEecc
Q 012979          199 NDCFPCLQVLNLVGV  213 (452)
Q Consensus       199 l~~cP~Le~L~L~~~  213 (452)
                      +..++.|+.|+|.++
T Consensus       401 ~~~l~~L~~L~L~~N  415 (680)
T 1ziw_A          401 FSWLGHLEVLDLGLN  415 (680)
T ss_dssp             TTTCTTCCEEECCSS
T ss_pred             hhCCCCCCEEeCCCC
Confidence            345777777777554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=97.88  E-value=1.5e-05  Score=76.26  Aligned_cols=148  Identities=20%  Similarity=0.208  Sum_probs=89.8

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC--CCCCCCCCceeeeeeEeecchhHHHHhcc
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD--NLNQMPMLTKLTLEFIRLEDEDLDKVNDC  201 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~--~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~  201 (452)
                      ..+.|++|++.+...    .   .++ ....+++|++|+|.+..+ +.+  .+..+++|++|+|.+-.+..-. ...+..
T Consensus        61 ~l~~L~~L~l~~n~l----~---~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~  131 (272)
T 3rfs_A           61 YLPNVRYLALGGNKL----H---DIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLP-DGVFDK  131 (272)
T ss_dssp             GCTTCCEEECTTSCC----C---CCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTT
T ss_pred             cCCCCcEEECCCCCC----C---Cch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccC-HHHhcc
Confidence            368899999974321    1   123 234689999999997433 222  3688999999999887776322 223567


Q ss_pred             CCcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccc
Q 012979          202 FPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIR  281 (452)
Q Consensus       202 cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~  281 (452)
                      +|.|++|+|.++. ....                 .....-..++|+.|++......                 ..+.-.
T Consensus       132 l~~L~~L~L~~n~-l~~~-----------------~~~~~~~l~~L~~L~l~~n~l~-----------------~~~~~~  176 (272)
T 3rfs_A          132 LTNLTYLNLAHNQ-LQSL-----------------PKGVFDKLTNLTELDLSYNQLQ-----------------SLPEGV  176 (272)
T ss_dssp             CTTCCEEECCSSC-CCCC-----------------CTTTTTTCTTCCEEECCSSCCC-----------------CCCTTT
T ss_pred             CCCCCEEECCCCc-cCcc-----------------CHHHhccCccCCEEECCCCCcC-----------------ccCHHH
Confidence            9999999997652 1110                 0011115678888887433211                 111123


Q ss_pred             ccccCcccEEEEeeccccccc-cccccCCceeEEEE
Q 012979          282 FQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKV  316 (452)
Q Consensus       282 l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L  316 (452)
                      +.++++|+.|+++...+..+. ..+..+++++.|.+
T Consensus       177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l  212 (272)
T 3rfs_A          177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWL  212 (272)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred             hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEc
Confidence            456778888888765443322 23456788888775

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.88  E-value=1.7e-05  Score=74.93  Aligned_cols=153  Identities=20%  Similarity=0.211  Sum_probs=84.3

Q ss_pred             CCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979          157 KSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV  233 (452)
Q Consensus       157 ~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~  233 (452)
                      +.|++|+|.+..+ .  +..+..+++|++|+|.+-.+.+-. ...+..++.|++|+|.++. ...               
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~---------------   97 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQ-LAS---------------   97 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC-CCC---------------
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCc-ccc---------------
Confidence            4678888876322 2  234677788888888776665321 1223557888888886532 111               


Q ss_pred             cCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccccc-ccccCCcee
Q 012979          234 SNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLIN-TFPFGKTIK  312 (452)
Q Consensus       234 s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-l~~~~p~lk  312 (452)
                        ......-..++|++|++.....                 ...+.-.+.++.+|++|+++...+..+.. .+..+++++
T Consensus        98 --~~~~~~~~l~~L~~L~L~~N~l-----------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  158 (251)
T 3m19_A           98 --LPLGVFDHLTQLDKLYLGGNQL-----------------KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ  158 (251)
T ss_dssp             --CCTTTTTTCTTCCEEECCSSCC-----------------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             --cChhHhcccCCCCEEEcCCCcC-----------------CCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC
Confidence              0000111457777777743211                 11111234567778888887654443322 345677888


Q ss_pred             EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979          313 KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW  352 (452)
Q Consensus       313 kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~  352 (452)
                      .|.+.-..    ...+   ++..+..+++|+.|++.+..|
T Consensus       159 ~L~L~~N~----l~~~---~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          159 TLSLSTNQ----LQSV---PHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             EEECCSSC----CSCC---CTTTTTTCTTCCEEECCSCCB
T ss_pred             EEECCCCc----CCcc---CHHHHhCCCCCCEEEeeCCce
Confidence            87753221    1111   124567788888888876644

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.87  E-value=8.2e-05  Score=77.45  Aligned_cols=55  Identities=20%  Similarity=0.128  Sum_probs=33.1

Q ss_pred             cCCCCcEEEeeceeec----CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC--CeEEEecc
Q 012979          155 CCKSLVELEVKNAWLS----VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL--QVLNLVGV  213 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~d----~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L--e~L~L~~~  213 (452)
                      .+++|++|+|++..+.    +..++.+++|++|+|.+-.+.+.++    ..++.|  ++|.|.++
T Consensus        88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B           88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSV----LPIAHLNISKVLLVLG  148 (520)
T ss_dssp             CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGG----GGGTTSCEEEEEEEEC
T ss_pred             ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhc----cccccceeeEEEeecc
Confidence            4667777777753321    1245667777777777766665443    335666  77777554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.86  E-value=2.7e-05  Score=87.19  Aligned_cols=206  Identities=12%  Similarity=0.063  Sum_probs=104.4

Q ss_pred             CCceEEEeeecccccccccccccce--ecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAF--ISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~--~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      +.|++|++++...      . .+|.  ....+++|+.|+|.+..+ ..+.+..+++|++|+|.+-.+.  .+..-+..++
T Consensus       548 ~~L~~L~Ls~N~L------~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~  618 (876)
T 4ecn_A          548 PKIQIFYMGYNNL------E-EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE--EIPEDFCAFT  618 (876)
T ss_dssp             TTCCEEECCSSCC------C-BCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS--CCCTTSCEEC
T ss_pred             CCccEEEeeCCcC------C-ccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc--cchHHHhhcc
Confidence            4666666653211      1 3444  344677788888876322 3346677788888888776665  3333356677


Q ss_pred             c-CCeEEEecccccccCc----cccccccEEEeeecCC---cceE-----EecCCceeEEEeeeecCCce----eeeCCc
Q 012979          204 C-LQVLNLVGVGGFRQPK----IHLLHLKSCLWTVSNA---PLSL-----AIYAPNLVKLELRCVKPKSL----VLQTPL  266 (452)
Q Consensus       204 ~-Le~L~L~~~~g~~~~~----l~~~sLr~l~l~~s~~---~~~l-----~~~aP~Le~L~l~~~~~~~l----~i~~p~  266 (452)
                      . |++|+|.++.-...+.    ...++|+.+.+.-...   ...+     ....++|+.|++.......+    .-..+.
T Consensus       619 ~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~  698 (876)
T 4ecn_A          619 DQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP  698 (876)
T ss_dssp             TTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCC
T ss_pred             ccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCC
Confidence            7 8888886653222222    1123466664432111   0000     11335788888754322211    002345


Q ss_pred             cceEEEee---ccccccccc-------ccCcccEEEEeeccccccccccc--cCCceeEEEEEeccCCCCccccccChhH
Q 012979          267 LHDFCLSL---EVANEIRFQ-------EFRNLMNLQLESSSLSSLINTFP--FGKTIKKLKVELLKPGEPIGMKNLNLGV  334 (452)
Q Consensus       267 L~~~~l~i---~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~l~~--~~p~lkkL~L~~~~~~~~~~~l~~dl~~  334 (452)
                      |+.+.+.-   ...|.-.+.       ++++|++|+++...+..+...+.  .+++|+.|.+.-... ..       ++.
T Consensus       699 L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L-~~-------lp~  770 (876)
T 4ecn_A          699 ISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCF-SS-------FPT  770 (876)
T ss_dssp             CSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCC-SS-------CCC
T ss_pred             CCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCC-Cc-------cch
Confidence            55554421   111221111       23378888887655444333333  577888877532211 11       133


Q ss_pred             HhhcCCCccEEEEcc
Q 012979          335 LFDVFPNLSSLTLGP  349 (452)
Q Consensus       335 lL~~~PnL~~L~I~~  349 (452)
                      -+..+|+|+.|++..
T Consensus       771 ~l~~L~~L~~L~Ls~  785 (876)
T 4ecn_A          771 QPLNSSQLKAFGIRH  785 (876)
T ss_dssp             GGGGCTTCCEEECCC
T ss_pred             hhhcCCCCCEEECCC
Confidence            344667777777743

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=97.86  E-value=6.6e-05  Score=80.85  Aligned_cols=127  Identities=16%  Similarity=0.135  Sum_probs=78.0

Q ss_pred             cCCceEEEeeecccccc-ccc---cc-------ccceecc--cCCCCcEEEeecee-ec--CCCCCCCCCCceeeeeeEe
Q 012979          126 CEELKFLSISDCWFQSC-WRK---SE-------VLAFISS--CCKSLVELEVKNAW-LS--VDNLNQMPMLTKLTLEFIR  189 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~-~~~---~~-------~L~~~~~--~c~~L~~L~L~~~~-~d--~~~l~~fp~Lr~L~L~~v~  189 (452)
                      .+.|++|+|++...... ...   +.       .+|....  .+++|++|+|.++. ..  +..+..+++|++|+|.+-.
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            57899999974321000 000   00       1566665  79999999999742 22  4468899999999999887


Q ss_pred             -ecc----hhHHHH--hccCCcCCeEEEecccccccCc---c-ccccccEEEeeec----CCcceEEecCCceeEEEeee
Q 012979          190 -LED----EDLDKV--NDCFPCLQVLNLVGVGGFRQPK---I-HLLHLKSCLWTVS----NAPLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       190 -i~~----~~L~~l--l~~cP~Le~L~L~~~~g~~~~~---l-~~~sLr~l~l~~s----~~~~~l~~~aP~Le~L~l~~  254 (452)
                       +++    ..+..+  ...+++|++|.|.++.-...+.   + .+++|+.+.+.-.    ..+ .+. ..++|++|++..
T Consensus       285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~-~l~~L~~L~L~~  362 (636)
T 4eco_A          285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFG-SEIKLASLNLAY  362 (636)
T ss_dssp             TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCE-EEEEESEEECCS
T ss_pred             CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhC-CCCCCCEEECCC
Confidence             654    344442  2446999999997764222332   2 3567888755321    111 222 557788888753

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.86  E-value=0.0002  Score=75.56  Aligned_cols=33  Identities=9%  Similarity=0.129  Sum_probs=16.0

Q ss_pred             ccCcccEEEEeeccccc-cccccccCCceeEEEE
Q 012979          284 EFRNLMNLQLESSSLSS-LINTFPFGKTIKKLKV  316 (452)
Q Consensus       284 ~~~~L~~L~l~~~~~~~-~~~l~~~~p~lkkL~L  316 (452)
                      ++.+|+.|+++...+.. +...+..+++++.|.+
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  384 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL  384 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence            44566666665433222 1223345566666554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=97.85  E-value=4e-05  Score=74.25  Aligned_cols=77  Identities=18%  Similarity=0.114  Sum_probs=57.1

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.|++|++++..-    .   .++. ...+++|+.|+|.+..+ +.+.+..+++|++|+|.+-.+.+-  . -+..+|+
T Consensus        67 l~~L~~L~L~~n~l----~---~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~--~-~l~~l~~  135 (291)
T 1h6t_A           67 LPNVTKLFLNGNKL----T---DIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI--N-GLVHLPQ  135 (291)
T ss_dssp             CTTCCEEECCSSCC----C---CCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC--G-GGGGCTT
T ss_pred             CCCCCEEEccCCcc----C---CCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC--h-hhcCCCC
Confidence            57899999974321    1   1222 45789999999997433 456688999999999998877652  2 2567999


Q ss_pred             CCeEEEecc
Q 012979          205 LQVLNLVGV  213 (452)
Q Consensus       205 Le~L~L~~~  213 (452)
                      |++|+|.++
T Consensus       136 L~~L~l~~n  144 (291)
T 1h6t_A          136 LESLYLGNN  144 (291)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEEccCC
Confidence            999999765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=97.84  E-value=3.6e-05  Score=73.40  Aligned_cols=167  Identities=19%  Similarity=0.135  Sum_probs=86.9

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..+++|++++..-      ....+....++++|++|+|.+..+ ..  ..+..+++|++|+|.+-.+..-.- ..+..++
T Consensus        37 ~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~  109 (270)
T 2o6q_A           37 ADTKKLDLQSNKL------SSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPI-GVFDQLV  109 (270)
T ss_dssp             TTCSEEECCSSCC------SCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCT-TTTTTCS
T ss_pred             CCCCEEECcCCCC------CeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCH-hHccccc
Confidence            4677777763311      011111234577888888876332 22  224667888888887665543211 2345678


Q ss_pred             cCCeEEEecccccccCc---cccccccEEEeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccc
Q 012979          204 CLQVLNLVGVGGFRQPK---IHLLHLKSCLWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVA  277 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~~~---l~~~sLr~l~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~  277 (452)
                      +|++|.|.++.-...+.   -.+++|+.+.+....   ......-..|+|++|.+....                 +...
T Consensus       110 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----------------l~~~  172 (270)
T 2o6q_A          110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-----------------LKRV  172 (270)
T ss_dssp             SCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-----------------CSCC
T ss_pred             CCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-----------------CcEe
Confidence            88888886542111111   124555555333211   111111134556665553211                 1111


Q ss_pred             ccccccccCcccEEEEeeccccccc-cccccCCceeEEEEE
Q 012979          278 NEIRFQEFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVE  317 (452)
Q Consensus       278 ~~~~l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~  317 (452)
                      +.-.+.++++|+.|+++...+..+. ..+..+++++.|.+.
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  213 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQ  213 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEec
Confidence            2224567889999999865544332 235668899998864

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=97.84  E-value=2.9e-05  Score=76.29  Aligned_cols=214  Identities=15%  Similarity=0.078  Sum_probs=117.2

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec-CCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS-VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d-~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      ...|++|++.+..-      ....|.....+++|++|+|.+..+. .+. ..+++|++|+|.+..+..-. ...+..+++
T Consensus        77 l~~L~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~-~~~~~~l~~  148 (332)
T 2ft3_A           77 LQHLYALVLVNNKI------SKIHEKAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVP-KGVFSGLRN  148 (332)
T ss_dssp             CTTCCEEECCSSCC------CEECGGGSTTCTTCCEEECCSSCCCSCCS-SCCTTCCEEECCSSCCCCCC-SGGGSSCSS
T ss_pred             CCCCcEEECCCCcc------CccCHhHhhCcCCCCEEECCCCcCCccCc-cccccCCEEECCCCccCccC-HhHhCCCcc
Confidence            46789999874321      1122333456889999999974332 222 23489999999887665322 123567999


Q ss_pred             CCeEEEecccc----cccCccccccccEEEeeec---CCcceEEecCCceeEEEeeeecCCce----eeeCCccceEEEe
Q 012979          205 LQVLNLVGVGG----FRQPKIHLLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCVKPKSL----VLQTPLLHDFCLS  273 (452)
Q Consensus       205 Le~L~L~~~~g----~~~~~l~~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~  273 (452)
                      |++|.+.++.-    .....+...+|+.+.+.-.   ..+..   ..++|+.|++........    .-..+.|+.+.+.
T Consensus       149 L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          149 MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKD---LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             CCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSS---SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             CCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCcc---ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence            99999976531    1111122225666533211   11111   126888888754322111    1123355554432


Q ss_pred             e---cccccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCC-CCccccccChhHHhhcCCCccEEEEcc
Q 012979          274 L---EVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPG-EPIGMKNLNLGVLFDVFPNLSSLTLGP  349 (452)
Q Consensus       274 i---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~-~~~~~l~~dl~~lL~~~PnL~~L~I~~  349 (452)
                      -   ...+.-.+.++++|++|+++...+..+...+..+++++.|.+.-.... .....+  ....+...+++|++|++.+
T Consensus       226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~--~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          226 HNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF--CPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS--SCSSCCSSSCCBSEEECCS
T ss_pred             CCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc--cccccccccccccceEeec
Confidence            1   112222456788999999987665554444667899999887432111 111111  0001122378899999977


Q ss_pred             Cch
Q 012979          350 RAW  352 (452)
Q Consensus       350 ~~~  352 (452)
                      ..+
T Consensus       304 N~~  306 (332)
T 2ft3_A          304 NPV  306 (332)
T ss_dssp             SSS
T ss_pred             Ccc
Confidence            644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=97.79  E-value=5.7e-05  Score=83.13  Aligned_cols=217  Identities=16%  Similarity=0.040  Sum_probs=121.1

Q ss_pred             hhhcchhh--cCCceEEEeeecccccccccccc---cceecccCCCCcEEEeece--eecCCCCCCCCCCceeeeeeEee
Q 012979          118 VKNWLPWV--CEELKFLSISDCWFQSCWRKSEV---LAFISSCCKSLVELEVKNA--WLSVDNLNQMPMLTKLTLEFIRL  190 (452)
Q Consensus       118 l~~WL~~~--~~~L~eL~l~~~~~~~~~~~~~~---L~~~~~~c~~L~~L~L~~~--~~d~~~l~~fp~Lr~L~L~~v~i  190 (452)
                      ...|-...  ...|+.|+|...+-      ...   ++.....++.|+.+++...  .+.++.++.+++|++|+|.+..+
T Consensus        39 ~C~w~gv~C~~~~v~~L~L~~~~l------~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l  112 (768)
T 3rgz_A           39 PCTFDGVTCRDDKVTSIDLSSKPL------NVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL  112 (768)
T ss_dssp             GGGSTTEEEETTEEEEEECTTSCC------CEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEE
T ss_pred             CcCCcceEECCCcEEEEECCCCCc------CCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcC
Confidence            34675322  25688888864321      111   3333445678888888752  22345788899999999988777


Q ss_pred             cchhHH-HHhccCCcCCeEEEeccccc-ccC-c--cccccccEEEeeecCCcc----e--EEecCCceeEEEeeeecCCc
Q 012979          191 EDEDLD-KVNDCFPCLQVLNLVGVGGF-RQP-K--IHLLHLKSCLWTVSNAPL----S--LAIYAPNLVKLELRCVKPKS  259 (452)
Q Consensus       191 ~~~~L~-~ll~~cP~Le~L~L~~~~g~-~~~-~--l~~~sLr~l~l~~s~~~~----~--l~~~aP~Le~L~l~~~~~~~  259 (452)
                      .+.--. .-+..|++|++|+|.++.-. ..+ .  -.+++|+++.+.......    .  ..-..++|++|++.......
T Consensus       113 ~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~  192 (768)
T 3rgz_A          113 SGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG  192 (768)
T ss_dssp             EEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEES
T ss_pred             CCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccc
Confidence            642211 13567999999999765311 111 1  246788888553222110    0  02256888888875432110


Q ss_pred             e--eeeCCccceEEEeeccc---ccccccccCcccEEEEeecccc-ccccccccCCceeEEEEEeccCCCCccccccChh
Q 012979          260 L--VLQTPLLHDFCLSLEVA---NEIRFQEFRNLMNLQLESSSLS-SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLG  333 (452)
Q Consensus       260 l--~i~~p~L~~~~l~i~~~---~~~~l~~~~~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~  333 (452)
                      .  .-..+.|+.+.+.-.+.   .. .+.++++|++|+++...+. .+...+..+++++.|.+.-......       ++
T Consensus       193 ~~~~~~l~~L~~L~Ls~n~l~~~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-------~~  264 (768)
T 3rgz_A          193 DVDVSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP-------IP  264 (768)
T ss_dssp             CCBCTTCTTCCEEECCSSCCCSCCC-BCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEES-------CC
T ss_pred             cCCcccCCcCCEEECcCCcCCCCCc-ccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCc-------cC
Confidence            0  01233555544431111   11 2667888999998865443 2334456788888887632211110       11


Q ss_pred             HHhhcCCCccEEEEccC
Q 012979          334 VLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       334 ~lL~~~PnL~~L~I~~~  350 (452)
                      ..  .+++|++|++...
T Consensus       265 ~~--~l~~L~~L~L~~n  279 (768)
T 3rgz_A          265 PL--PLKSLQYLSLAEN  279 (768)
T ss_dssp             CC--CCTTCCEEECCSS
T ss_pred             cc--ccCCCCEEECcCC
Confidence            12  7889999998654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=97.77  E-value=3.7e-05  Score=80.25  Aligned_cols=181  Identities=15%  Similarity=0.095  Sum_probs=104.5

Q ss_pred             cCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEecccccccCccccccccEEE
Q 012979          155 CCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCL  230 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~  230 (452)
                      .+++|+.|+|.+..+ +  +..+..+++|++|+|.+-.+.+ ..    +..+|+|++|+|.++. .... ...++|+.+.
T Consensus        32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~~l-~~~~~L~~L~  105 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQEL-LVGPSIETLH  105 (487)
T ss_dssp             TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EEEE-EECTTCCEEE
T ss_pred             cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CCCC-CCCCCcCEEE
Confidence            566899999997433 2  2357899999999998877653 22    6789999999997653 2111 1237888885


Q ss_pred             eeecCCcceEEecCCceeEEEeeeecCCce----eeeCCccceEEEeeccc---ccccc-cccCcccEEEEeeccccccc
Q 012979          231 WTVSNAPLSLAIYAPNLVKLELRCVKPKSL----VLQTPLLHDFCLSLEVA---NEIRF-QEFRNLMNLQLESSSLSSLI  302 (452)
Q Consensus       231 l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~i~~~---~~~~l-~~~~~L~~L~l~~~~~~~~~  302 (452)
                      +.-...........|+|++|++........    .-..+.|+.+.+.-...   +...+ .++++|+.|+++...+..+ 
T Consensus       106 L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             CCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             CcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            543322222333568899999865432211    01123444443321111   11122 2567888888876554432 


Q ss_pred             cccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          303 NTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       303 ~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .....+++++.|.+.-..    ...    ++.-+..+|+|+.|++...
T Consensus       185 ~~~~~l~~L~~L~Ls~N~----l~~----~~~~~~~l~~L~~L~Ls~N  224 (487)
T 3oja_A          185 KGQVVFAKLKTLDLSSNK----LAF----MGPEFQSAAGVTWISLRNN  224 (487)
T ss_dssp             ECCCCCTTCCEEECCSSC----CCE----ECGGGGGGTTCSEEECTTS
T ss_pred             cccccCCCCCEEECCCCC----CCC----CCHhHcCCCCccEEEecCC
Confidence            222347778887753221    111    1222567788888888654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.75  E-value=4.7e-05  Score=74.26  Aligned_cols=15  Identities=27%  Similarity=0.434  Sum_probs=8.8

Q ss_pred             hhcCCCccEEEEccC
Q 012979          336 FDVFPNLSSLTLGPR  350 (452)
Q Consensus       336 L~~~PnL~~L~I~~~  350 (452)
                      +..+|+|++|++.+.
T Consensus       292 ~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          292 PDELPQVGNLSLKGN  306 (312)
T ss_dssp             TTTSCEEEEEECTTC
T ss_pred             HhhCCCCCEEeccCC
Confidence            455666666666443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=97.73  E-value=3e-05  Score=83.30  Aligned_cols=78  Identities=18%  Similarity=0.154  Sum_probs=57.5

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..+.|++|+|++...      . .++. ...+++|+.|+|.+..+ +.+.+..+++|++|+|.+-.+.+  +.. +..||
T Consensus        63 ~l~~L~~L~Ls~N~l------~-~~~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~--l~~-l~~l~  131 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKL------T-DIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISD--ING-LVHLP  131 (605)
T ss_dssp             GCTTCCEEECTTSCC------C-CCGG-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCC--CGG-GGGCT
T ss_pred             cCCCCCEEEeeCCCC------C-CChh-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCC--Ccc-ccCCC
Confidence            368899999974321      1 1222 44789999999997544 56678899999999999877765  222 56799


Q ss_pred             cCCeEEEecc
Q 012979          204 CLQVLNLVGV  213 (452)
Q Consensus       204 ~Le~L~L~~~  213 (452)
                      +|+.|+|.++
T Consensus       132 ~L~~L~Ls~N  141 (605)
T 1m9s_A          132 QLESLYLGNN  141 (605)
T ss_dssp             TCSEEECCSS
T ss_pred             ccCEEECCCC
Confidence            9999999765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.73  E-value=5.7e-06  Score=84.63  Aligned_cols=118  Identities=17%  Similarity=0.131  Sum_probs=62.7

Q ss_pred             HHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccceec
Q 012979           74 LENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAFIS  153 (452)
Q Consensus        74 v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~  153 (452)
                      +..++...+.++.|++..+.      +.       +.   ....+...+ ...+.|++|++++..-     .+.....+.
T Consensus        20 ~~~~~~~~~~L~~L~L~~~~------l~-------~~---~~~~l~~~l-~~~~~L~~L~Ls~n~l-----~~~~~~~l~   77 (461)
T 1z7x_W           20 WAELLPLLQQCQVVRLDDCG------LT-------EA---RCKDISSAL-RVNPALAELNLRSNEL-----GDVGVHCVL   77 (461)
T ss_dssp             HHHHHHHHTTCSEEEEESSC------CC-------HH---HHHHHHHHH-HTCTTCCEEECTTCCC-----HHHHHHHHH
T ss_pred             HHHHHhhcCCccEEEccCCC------CC-------HH---HHHHHHHHH-HhCCCcCEEeCCCCcC-----ChHHHHHHH
Confidence            44456667889999998431      10       00   001111111 1246788888863211     011122222


Q ss_pred             ccCC----CCcEEEeeceeec-------CCCCCCCCCCceeeeeeEeecchhHHHHhc----cCCcCCeEEEecc
Q 012979          154 SCCK----SLVELEVKNAWLS-------VDNLNQMPMLTKLTLEFIRLEDEDLDKVND----CFPCLQVLNLVGV  213 (452)
Q Consensus       154 ~~c~----~L~~L~L~~~~~d-------~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~----~cP~Le~L~L~~~  213 (452)
                      ..++    +|++|+|+++.+.       +..+..+++|++|+|.+..+.+..+..+..    ..+.|++|+|.+|
T Consensus        78 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  152 (461)
T 1z7x_W           78 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC  152 (461)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred             HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC
Confidence            2233    6888888765443       223567788888888777776655544332    3556888888655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=97.70  E-value=0.00018  Score=74.83  Aligned_cols=60  Identities=18%  Similarity=0.276  Sum_probs=31.6

Q ss_pred             CcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979          286 RNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW  352 (452)
Q Consensus       286 ~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~  352 (452)
                      .+|+.|+++...+..+..-+..+++++.|.+.-..    ...+   +...+..+|+|++|++.+..+
T Consensus       421 ~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~----l~~l---~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          421 PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ----LKSV---PDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC----CCCC---CTTTTTTCTTCCEEECCSSCB
T ss_pred             ccCCEEECCCCcccccchhhhcCCCCCEEECCCCc----CCcc---CHHHhccCCcccEEECcCCCC
Confidence            46667777654444333323356777776653211    1111   112466777777777766533

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.70  E-value=1.5e-05  Score=77.65  Aligned_cols=59  Identities=19%  Similarity=0.176  Sum_probs=30.8

Q ss_pred             ccCCCCcEEEeeceeecC--C-----CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          154 SCCKSLVELEVKNAWLSV--D-----NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~d~--~-----~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ..+++|++|+|.+..+..  +     .+..+++|++|+|.+-.+....- ..++.+++|++|+|.++
T Consensus       114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N  179 (310)
T 4glp_A          114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSC-EQVRAFPALTSLDLSDN  179 (310)
T ss_dssp             CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCT-TSCCCCTTCCEEECCSC
T ss_pred             ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhH-HHhccCCCCCEEECCCC
Confidence            345667777776532211  1     12346677777776655532111 22345667777777554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=97.70  E-value=0.00015  Score=81.11  Aligned_cols=128  Identities=17%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             cCCceEEEeeeccccc-ccccc----------cccceecc--cCCCCcEEEeece-eec--CCCCCCCCCCceeeeeeEe
Q 012979          126 CEELKFLSISDCWFQS-CWRKS----------EVLAFISS--CCKSLVELEVKNA-WLS--VDNLNQMPMLTKLTLEFIR  189 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~-~~~~~----------~~L~~~~~--~c~~L~~L~L~~~-~~d--~~~l~~fp~Lr~L~L~~v~  189 (452)
                      .+.|++|+|++..... ..+..          ..+|....  .+++|+.|+|.++ +..  +..+..+++|++|+|.+-.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            4789999997432100 00000          01555544  7899999999974 232  3457899999999999876


Q ss_pred             -ecc----hhHHHH---hccCCcCCeEEEecccccccCc---c-ccccccEEEeeec---CCcceEEecCCceeEEEeee
Q 012979          190 -LED----EDLDKV---NDCFPCLQVLNLVGVGGFRQPK---I-HLLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       190 -i~~----~~L~~l---l~~cP~Le~L~L~~~~g~~~~~---l-~~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~  254 (452)
                       +++    ..+..+   +..+|+|++|+|.++.-...|.   + .+++|+.+.+.-.   ..+ .+. ..++|+.|++..
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~-~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFG-TNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCC-TTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhc-CCCcceEEECcC
Confidence             554    444443   2567799999997764323332   2 3667888755322   112 222 567888888754


Q ss_pred             e
Q 012979          255 V  255 (452)
Q Consensus       255 ~  255 (452)
                      .
T Consensus       605 N  605 (876)
T 4ecn_A          605 N  605 (876)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.70  E-value=3.2e-05  Score=75.02  Aligned_cols=156  Identities=19%  Similarity=0.155  Sum_probs=87.1

Q ss_pred             ccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979          154 SCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT  232 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~  232 (452)
                      ..+++|+.|+|.+..+ ..+....+++|++|+|.+-.+.  .+...+..+|.|++|.|.++. ..               
T Consensus        52 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L~l~~N~-l~---------------  113 (290)
T 1p9a_G           52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVLDVSFNR-LT---------------  113 (290)
T ss_dssp             TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEEECCSSC-CC---------------
T ss_pred             hcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCC--cCchhhccCCCCCEEECCCCc-Cc---------------
Confidence            4567777777775322 2222356777777777766554  222334567777777775432 11               


Q ss_pred             ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccccc-cccccCCce
Q 012979          233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLI-NTFPFGKTI  311 (452)
Q Consensus       233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~l~~~~p~l  311 (452)
                        .......-..++|++|.+......                 ..+.-.+.++.+|+.|+++...+..+. .++..++++
T Consensus       114 --~l~~~~~~~l~~L~~L~L~~N~l~-----------------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L  174 (290)
T 1p9a_G          114 --SLPLGALRGLGELQELYLKGNELK-----------------TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (290)
T ss_dssp             --CCCSSTTTTCTTCCEEECTTSCCC-----------------CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             --ccCHHHHcCCCCCCEEECCCCCCC-----------------ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCC
Confidence              111011115678888887432211                 111123456778888888765444332 234567888


Q ss_pred             eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhh
Q 012979          312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSA  354 (452)
Q Consensus       312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~  354 (452)
                      +.|.+.-..    ...    ++.-+...++|+.|++.+..|.+
T Consensus       175 ~~L~L~~N~----l~~----ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          175 DTLLLQENS----LYT----IPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CEEECCSSC----CCC----CCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CEEECCCCc----CCc----cChhhcccccCCeEEeCCCCccC
Confidence            988763221    111    23333456799999998886654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=97.69  E-value=0.00011  Score=81.62  Aligned_cols=121  Identities=12%  Similarity=0.086  Sum_probs=68.3

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      ...+++|++++...      ....+.....+++|+.|+|.+..+   .+..+..+++|++|+|.+-.+..-. ...+..+
T Consensus       265 ~~~L~~L~Ls~n~l------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l  337 (844)
T 3j0a_A          265 RSSVRHLDLSHGFV------FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY-SSNFYGL  337 (844)
T ss_dssp             TSCCCEEECTTCCC------CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-SCSCSSC
T ss_pred             cCCccEEECCCCcc------cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-HHHhcCC
Confidence            36789998864311      111233344678888888886432   2345678888888888876664321 1224568


Q ss_pred             CcCCeEEEecccccccC--cc-ccccccEEEeeecCCcceEEecCCceeEEEeeee
Q 012979          203 PCLQVLNLVGVGGFRQP--KI-HLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCV  255 (452)
Q Consensus       203 P~Le~L~L~~~~g~~~~--~l-~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~  255 (452)
                      |+|++|+|.++.-...+  .+ .+++|+.+.+.-... ..+. ..|+|+.|.+...
T Consensus       338 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~-~~~~L~~L~l~~N  391 (844)
T 3j0a_A          338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-TTIH-FIPSIPDIFLSGN  391 (844)
T ss_dssp             TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS-CCCS-SCCSCSEEEEESC
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCC-Cccc-CCCCcchhccCCC
Confidence            88888888654211111  12 256777774432111 1122 3677777777543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.69  E-value=5.1e-05  Score=72.44  Aligned_cols=56  Identities=14%  Similarity=0.128  Sum_probs=37.5

Q ss_pred             cCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          155 CCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      .+++|+.|+|.+..+ +.+++..+++|++|+|.+-.+.+-.  . ++.+|.|++|+|.++
T Consensus        39 ~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           39 ELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSS
T ss_pred             hcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCC
Confidence            466788888876433 3456677788888888776665422  1 567888888888654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.69  E-value=0.00025  Score=66.01  Aligned_cols=63  Identities=17%  Similarity=0.141  Sum_probs=33.7

Q ss_pred             cccccCccc-EEEEeecccccccc-ccccCCceeEEEEEeccCCCCccccccChhHHhhcC-CCccEEEEccC
Q 012979          281 RFQEFRNLM-NLQLESSSLSSLIN-TFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVF-PNLSSLTLGPR  350 (452)
Q Consensus       281 ~l~~~~~L~-~L~l~~~~~~~~~~-l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~-PnL~~L~I~~~  350 (452)
                      .+.++.+|+ +|+++...+..+.. .+.. +++++|.+.-..   ....+   ++..+..+ |+|++|++...
T Consensus       150 ~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~---~l~~i---~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          150 AFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNK---YLTVI---DKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             TTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCT---TCCEE---CTTTTTTCSBCCSEEECTTC
T ss_pred             cccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCC---CcccC---CHHHhhccccCCcEEECCCC
Confidence            355677888 88887544433222 2223 677777652110   01111   12445566 88888888653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=97.68  E-value=2.5e-06  Score=87.28  Aligned_cols=277  Identities=14%  Similarity=0.087  Sum_probs=149.2

Q ss_pred             hhcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecC---CCC-CCCC----CCceeeeeeEeecch--
Q 012979          124 WVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSV---DNL-NQMP----MLTKLTLEFIRLEDE--  193 (452)
Q Consensus       124 ~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~---~~l-~~fp----~Lr~L~L~~v~i~~~--  193 (452)
                      ...+.+++|++++..-..  .....++.....+++|++|+|++..+..   ..+ ..++    +|++|+|.+..+.+.  
T Consensus        25 ~~~~~L~~L~L~~~~l~~--~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~  102 (461)
T 1z7x_W           25 PLLQQCQVVRLDDCGLTE--ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  102 (461)
T ss_dssp             HHHTTCSEEEEESSCCCH--HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             hhcCCccEEEccCCCCCH--HHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence            356889999998543210  0011344445578999999999854421   112 2344    799999999888864  


Q ss_pred             -hHHHHhccCCcCCeEEEecccccccCc---c------ccccccEEEeeecCCcc-------eEEecCCceeEEEeeeec
Q 012979          194 -DLDKVNDCFPCLQVLNLVGVGGFRQPK---I------HLLHLKSCLWTVSNAPL-------SLAIYAPNLVKLELRCVK  256 (452)
Q Consensus       194 -~L~~ll~~cP~Le~L~L~~~~g~~~~~---l------~~~sLr~l~l~~s~~~~-------~l~~~aP~Le~L~l~~~~  256 (452)
                       .+...+..+|.|++|+|.++. .....   +      ..++|+++.+.......       ......|+|+.|++....
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  181 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND  181 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC
Confidence             566778899999999997653 21110   1      12468888554221110       011145899999986432


Q ss_pred             CCcee---e------eCCccceEEEeeccccc-------ccccccCcccEEEEeecccccc------ccccccCCceeEE
Q 012979          257 PKSLV---L------QTPLLHDFCLSLEVANE-------IRFQEFRNLMNLQLESSSLSSL------INTFPFGKTIKKL  314 (452)
Q Consensus       257 ~~~l~---i------~~p~L~~~~l~i~~~~~-------~~l~~~~~L~~L~l~~~~~~~~------~~l~~~~p~lkkL  314 (452)
                      .....   +      ..+.|+.+.+.-.....       -.+.++++|++|+++...+...      ..+...++++++|
T Consensus       182 i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L  261 (461)
T 1z7x_W          182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTL  261 (461)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             cchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEE
Confidence            11000   0      12355655442111111       0233568899999986443221      1122347889988


Q ss_pred             EEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhhh-hhccccCccccccccccceeEEEEEeecCCcchhHHHH
Q 012979          315 KVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSAV-QSNFDKGRLEIRTEMKVLKEIIARLVVDDISVTRSFIF  393 (452)
Q Consensus       315 ~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~~-~~~~~~~~~~~~~~~~~lk~lv~~~~~~~~~~~~~fl~  393 (452)
                      .+.-. ...+...  ..++..+..+|+|++|++........ ...+... +  ...-+.++++.+..-.- .......+.
T Consensus       262 ~L~~n-~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~-l--~~~~~~L~~L~L~~n~l-~~~~~~~l~  334 (461)
T 1z7x_W          262 WIWEC-GITAKGC--GDLCRVLRAKESLKELSLAGNELGDEGARLLCET-L--LEPGCQLESLWVKSCSF-TAACCSHFS  334 (461)
T ss_dssp             ECTTS-CCCHHHH--HHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH-H--TSTTCCCCEEECTTSCC-BGGGHHHHH
T ss_pred             ECcCC-CCCHHHH--HHHHHHHhhCCCcceEECCCCCCchHHHHHHHHH-h--ccCCccceeeEcCCCCC-chHHHHHHH
Confidence            76322 1111110  11356778899999999976533210 0011100 0  00014677665542111 122334455


Q ss_pred             HHHhcccccccEEEEec
Q 012979          394 AIMNICSNLSDMALLIH  410 (452)
Q Consensus       394 ~ll~~a~~L~~m~i~~~  410 (452)
                      ..+.+.+.|+.+.+.-.
T Consensus       335 ~~l~~~~~L~~L~Ls~n  351 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNN  351 (461)
T ss_dssp             HHHHHCSSCCEEECCSS
T ss_pred             HHHhhCCCccEEEccCC
Confidence            56677899998887543

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=97.67  E-value=0.00015  Score=67.64  Aligned_cols=188  Identities=14%  Similarity=0.068  Sum_probs=96.3

Q ss_pred             cCCceEEEeeecccccccccccccce-ecccCCCCcEEEeecee-e---cCCCCCCCCCCceeeeee-EeecchhHHHHh
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNAW-L---SVDNLNQMPMLTKLTLEF-IRLEDEDLDKVN  199 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~~-~---d~~~l~~fp~Lr~L~L~~-v~i~~~~L~~ll  199 (452)
                      ...+++|++.+..-       ..++. ....+++|+.|+|.+.. +   ....+..+++|++|+|.+ -.+..-. ...+
T Consensus        30 ~~~l~~L~l~~n~l-------~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f  101 (239)
T 2xwt_C           30 PPSTQTLKLIETHL-------RTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDAL  101 (239)
T ss_dssp             CTTCCEEEEESCCC-------SEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSE
T ss_pred             CCcccEEEEeCCcc-------eEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHh
Confidence            34788888874321       11222 23467889999998642 3   233567889999999986 4444211 1123


Q ss_pred             ccCCcCCeEEEecccccccCc-ccccccc---EEEeeecCCcceEE----ecCCcee-EEEeeeecCCceeeeCCccceE
Q 012979          200 DCFPCLQVLNLVGVGGFRQPK-IHLLHLK---SCLWTVSNAPLSLA----IYAPNLV-KLELRCVKPKSLVLQTPLLHDF  270 (452)
Q Consensus       200 ~~cP~Le~L~L~~~~g~~~~~-l~~~sLr---~l~l~~s~~~~~l~----~~aP~Le-~L~l~~~~~~~l~i~~p~L~~~  270 (452)
                      ..+|+|++|.|.++.-...+. -.+++|+   .+.+.-...-..+.    -..++|+ .|++....              
T Consensus       102 ~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~--------------  167 (239)
T 2xwt_C          102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG--------------  167 (239)
T ss_dssp             ECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC--------------
T ss_pred             CCCCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC--------------
Confidence            568999999997653111121 1123333   43221110000010    1234455 54442111              


Q ss_pred             EEeecccccccccccCcccEEEEeec-ccccc-ccccccC-CceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979          271 CLSLEVANEIRFQEFRNLMNLQLESS-SLSSL-INTFPFG-KTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL  347 (452)
Q Consensus       271 ~l~i~~~~~~~l~~~~~L~~L~l~~~-~~~~~-~~l~~~~-p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I  347 (452)
                         +...+...+.+ .+|++|+++.. .+..+ ...+..+ ++++.|.+.-.    ....+    +.  ..|++|+.|++
T Consensus       168 ---l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N----~l~~l----~~--~~~~~L~~L~l  233 (239)
T 2xwt_C          168 ---FTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT----SVTAL----PS--KGLEHLKELIA  233 (239)
T ss_dssp             ---CCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC----CCCCC----CC--TTCTTCSEEEC
T ss_pred             ---CcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC----ccccC----Ch--hHhccCceeec
Confidence               11112122233 68889998755 24433 2345567 89999876321    11111    11  17899999998


Q ss_pred             cc
Q 012979          348 GP  349 (452)
Q Consensus       348 ~~  349 (452)
                      ..
T Consensus       234 ~~  235 (239)
T 2xwt_C          234 RN  235 (239)
T ss_dssp             TT
T ss_pred             cC
Confidence            54

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=97.67  E-value=0.0001  Score=71.43  Aligned_cols=148  Identities=21%  Similarity=0.229  Sum_probs=90.5

Q ss_pred             CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979          157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV  233 (452)
Q Consensus       157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~  233 (452)
                      ++|++|+|.+..+   .+..+..+++|++|+|.+-.++.-..   .+.+|+|++|+|.++. ..                
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~Ls~N~-l~----------------   90 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV---DGTLPVLGTLDLSHNQ-LQ----------------   90 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC---CSCCTTCCEEECCSSC-CS----------------
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC---CCCCCcCCEEECCCCc-CC----------------
Confidence            5788888886322   23456788888888887766653211   1568888888886532 11                


Q ss_pred             cCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc-ccccccCCcee
Q 012979          234 SNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIK  312 (452)
Q Consensus       234 s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lk  312 (452)
                       ..+..+ ...|+|++|++.....                 ...+.-.+.++.+|++|+++...+..+ ..++...++++
T Consensus        91 -~l~~~~-~~l~~L~~L~l~~N~l-----------------~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           91 -SLPLLG-QTLPALTVLDVSFNRL-----------------TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             -SCCCCT-TTCTTCCEEECCSSCC-----------------CCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             -cCchhh-ccCCCCCEEECCCCcC-----------------cccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence             111111 2567888888753321                 111222466788999999986554432 22345688999


Q ss_pred             EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          313 KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       313 kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .|.+.-.    ....+   ++.++..+++|+.|++...
T Consensus       152 ~L~L~~N----~l~~l---~~~~~~~l~~L~~L~L~~N  182 (290)
T 1p9a_G          152 KLSLANN----NLTEL---PAGLLNGLENLDTLLLQEN  182 (290)
T ss_dssp             EEECTTS----CCSCC---CTTTTTTCTTCCEEECCSS
T ss_pred             EEECCCC----cCCcc---CHHHhcCcCCCCEEECCCC
Confidence            9886322    11111   2356788999999999765

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=97.61  E-value=5.5e-05  Score=71.33  Aligned_cols=149  Identities=18%  Similarity=0.168  Sum_probs=90.9

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..++.|+|.+..-      ....+.....+++|++|+|.+..+ +  +..+..+++|++|+|.+-.+..-.- ..+..++
T Consensus        35 ~~l~~L~L~~n~l------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~  107 (251)
T 3m19_A           35 ADTEKLDLQSTGL------ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPL-GVFDHLT  107 (251)
T ss_dssp             TTCCEEECTTSCC------CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-TTTTTCT
T ss_pred             CCCCEEEccCCCc------CccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccCh-hHhcccC
Confidence            5788999974321      111222234688999999997433 2  2347889999999998877763221 3346799


Q ss_pred             cCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccc
Q 012979          204 CLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQ  283 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~  283 (452)
                      +|++|+|.++. ....                 ....--..++|+.|++.....                 ...+.-.+.
T Consensus       108 ~L~~L~L~~N~-l~~~-----------------~~~~~~~l~~L~~L~Ls~N~l-----------------~~~~~~~~~  152 (251)
T 3m19_A          108 QLDKLYLGGNQ-LKSL-----------------PSGVFDRLTKLKELRLNTNQL-----------------QSIPAGAFD  152 (251)
T ss_dssp             TCCEEECCSSC-CCCC-----------------CTTTTTTCTTCCEEECCSSCC-----------------CCCCTTTTT
T ss_pred             CCCEEEcCCCc-CCCc-----------------ChhHhccCCcccEEECcCCcC-----------------CccCHHHcC
Confidence            99999997642 1110                 001111567888888743221                 111112455


Q ss_pred             ccCcccEEEEeeccccccc-cccccCCceeEEEEE
Q 012979          284 EFRNLMNLQLESSSLSSLI-NTFPFGKTIKKLKVE  317 (452)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~-~l~~~~p~lkkL~L~  317 (452)
                      ++++|+.|+++...+..+. ..+..+++++.|.+.
T Consensus       153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  187 (251)
T 3m19_A          153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF  187 (251)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred             cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence            6778888888765544332 245567888887764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=97.60  E-value=0.00013  Score=71.32  Aligned_cols=208  Identities=15%  Similarity=0.083  Sum_probs=112.3

Q ss_pred             cCCceEEEeee-cccccccccccccceecccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhcc
Q 012979          126 CEELKFLSISD-CWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDC  201 (452)
Q Consensus       126 ~~~L~eL~l~~-~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~  201 (452)
                      .+.|++|++++ ...      ...+|.....+++|++|+|.+..+   .+..+..+++|++|+|.+-.+.+.. ...+..
T Consensus        75 l~~L~~L~L~~~n~l------~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~  147 (313)
T 1ogq_A           75 LPYLNFLYIGGINNL------VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL-PPSISS  147 (313)
T ss_dssp             CTTCSEEEEEEETTE------ESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCC-CGGGGG
T ss_pred             CCCCCeeeCCCCCcc------cccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcC-ChHHhc
Confidence            46788888862 211      112344445678888888886432   2334778888888888776665321 122355


Q ss_pred             CCcCCeEEEeccccc-ccCc-c-ccc-cccEEEeeecC----CcceEEecCCceeEEEeeeecCC----ceeeeCCccce
Q 012979          202 FPCLQVLNLVGVGGF-RQPK-I-HLL-HLKSCLWTVSN----APLSLAIYAPNLVKLELRCVKPK----SLVLQTPLLHD  269 (452)
Q Consensus       202 cP~Le~L~L~~~~g~-~~~~-l-~~~-sLr~l~l~~s~----~~~~l~~~aP~Le~L~l~~~~~~----~l~i~~p~L~~  269 (452)
                      +|+|++|+|.++.-. ..+. + .++ +|+.+.+.-..    .+..+. .. +|+.|++......    ...-..+.|+.
T Consensus       148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  225 (313)
T 1ogq_A          148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQK  225 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GC-CCSEEECCSSEEEECCGGGCCTTSCCSE
T ss_pred             CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CC-cccEEECcCCcccCcCCHHHhcCCCCCE
Confidence            888888888665311 1221 2 233 67777443111    111111 22 3888887532211    01112345555


Q ss_pred             EEEeeccc--ccccccccCcccEEEEeecccc-ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEE
Q 012979          270 FCLSLEVA--NEIRFQEFRNLMNLQLESSSLS-SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLT  346 (452)
Q Consensus       270 ~~l~i~~~--~~~~l~~~~~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~  346 (452)
                      +.+.-...  ....+..+++|++|+++...+. .+...+..+++++.|.+.-......       ++.. ..+|+|+.|+
T Consensus       226 L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~-------ip~~-~~l~~L~~l~  297 (313)
T 1ogq_A          226 IHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE-------IPQG-GNLQRFDVSA  297 (313)
T ss_dssp             EECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE-------CCCS-TTGGGSCGGG
T ss_pred             EECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc-------CCCC-ccccccChHH
Confidence            44321111  0112556789999999865554 3344566789999988642211001       1222 6778888888


Q ss_pred             EccC
Q 012979          347 LGPR  350 (452)
Q Consensus       347 I~~~  350 (452)
                      +.+.
T Consensus       298 l~~N  301 (313)
T 1ogq_A          298 YANN  301 (313)
T ss_dssp             TCSS
T ss_pred             hcCC
Confidence            7655

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.59  E-value=0.0003  Score=75.80  Aligned_cols=14  Identities=14%  Similarity=0.121  Sum_probs=8.6

Q ss_pred             hcCCCccEEEEccC
Q 012979          337 DVFPNLSSLTLGPR  350 (452)
Q Consensus       337 ~~~PnL~~L~I~~~  350 (452)
                      ..+++|++|++...
T Consensus       238 ~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          238 VLPSELKELMVSGN  251 (622)
T ss_dssp             CCCTTCCEEECCSS
T ss_pred             CCCCcCcEEECCCC
Confidence            34567777777543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.58  E-value=6.6e-05  Score=66.04  Aligned_cols=83  Identities=29%  Similarity=0.331  Sum_probs=60.9

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.+++|++.+....     +..+|.....+++|++|+|.+..+ +...+..+++|++|+|.+-.+.+. +..+...+|+
T Consensus        23 ~~~L~~L~l~~n~l~-----~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~   96 (168)
T 2ell_A           23 PAAVRELVLDNCKSN-----DGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPN   96 (168)
T ss_dssp             TTSCSEEECCSCBCB-----TTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTT
T ss_pred             cccCCEEECCCCCCC-----hhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCC
Confidence            378999999754221     123454555789999999997544 345678899999999999888653 4555667999


Q ss_pred             CCeEEEeccc
Q 012979          205 LQVLNLVGVG  214 (452)
Q Consensus       205 Le~L~L~~~~  214 (452)
                      |++|+|.++.
T Consensus        97 L~~L~Ls~N~  106 (168)
T 2ell_A           97 LTHLNLSGNK  106 (168)
T ss_dssp             CCEEECBSSS
T ss_pred             CCEEeccCCc
Confidence            9999997763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=97.56  E-value=0.00054  Score=73.76  Aligned_cols=19  Identities=5%  Similarity=-0.006  Sum_probs=11.1

Q ss_pred             HHhhcCCCccEEEEccCch
Q 012979          334 VLFDVFPNLSSLTLGPRAW  352 (452)
Q Consensus       334 ~lL~~~PnL~~L~I~~~~~  352 (452)
                      .-+..+|+|+.|++.++.+
T Consensus       278 ~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          278 ESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             GGGGGSCTTCEEECCSCCC
T ss_pred             HHHhhccccCEEEecCCCC
Confidence            3455666666666655433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=97.55  E-value=0.00029  Score=74.29  Aligned_cols=61  Identities=16%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             CcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979          286 RNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS  353 (452)
Q Consensus       286 ~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~  353 (452)
                      .+|++|+++...+..+..-+..+++++.|.+.-..    ...+   ++..+..+|+|+.|++.+..|.
T Consensus       450 ~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~----l~~l---~~~~~~~l~~L~~L~l~~N~~~  510 (562)
T 3a79_B          450 PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ----LKSV---PDGVFDRLTSLQYIWLHDNPWD  510 (562)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC----CCCC---CTTSTTTCTTCCCEECCSCCBC
T ss_pred             CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC----CCCC---CHHHHhcCCCCCEEEecCCCcC
Confidence            46777777754444332323356777777653211    1111   1124667788888888766443

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.51  E-value=3.3e-05  Score=75.42  Aligned_cols=36  Identities=33%  Similarity=0.688  Sum_probs=33.3

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHH-HHHHHhHHHHHhhc
Q 012979            2 EEHLPQPLILEILSRLTDSADLA-RCRVVSKTLNSLCK   38 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~a-rts~lSkrWr~l~~   38 (452)
                      .+.||||||.+||++|| ++|++ +|++|||+||.+..
T Consensus        51 ~~~LP~ell~~Il~~Lp-~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           51 LAELPEPLLLRVLAELP-ATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             TTSSCHHHHHHHHHTSC-HHHHHHTGGGTCHHHHHHHT
T ss_pred             hhhCCHHHHHHHHHcCC-HHHHHHHHHHHhHHHHHHhc
Confidence            46899999999999996 99999 99999999999853

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.43  E-value=9.8e-05  Score=66.71  Aligned_cols=92  Identities=14%  Similarity=0.163  Sum_probs=63.0

Q ss_pred             cccceecccCCCCcEEEeeceeecCC---CCCCCCCCceeeeeeE-eecchhHHHHhc---cCCcCCeEEEecccccccC
Q 012979          147 EVLAFISSCCKSLVELEVKNAWLSVD---NLNQMPMLTKLTLEFI-RLEDEDLDKVND---CFPCLQVLNLVGVGGFRQP  219 (452)
Q Consensus       147 ~~L~~~~~~c~~L~~L~L~~~~~d~~---~l~~fp~Lr~L~L~~v-~i~~~~L~~ll~---~cP~Le~L~L~~~~g~~~~  219 (452)
                      ..||........|+.|+|+++.+...   .+..+++|++|+|.+. .|+|..+..+-.   .||.||+|+|.+|..+.+.
T Consensus        51 ~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~  130 (176)
T 3e4g_A           51 NHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK  130 (176)
T ss_dssp             GGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred             ccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence            34555433345799999998655322   3568899999999876 489999988755   2688999999887544332


Q ss_pred             ccccccccEEEeeecCCcceEEecCCceeEEEeeee
Q 012979          220 KIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCV  255 (452)
Q Consensus       220 ~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~  255 (452)
                      .+                ..+. ..|+|++|++..+
T Consensus       131 Gl----------------~~L~-~~~~L~~L~L~~c  149 (176)
T 3e4g_A          131 GI----------------IALH-HFRNLKYLFLSDL  149 (176)
T ss_dssp             HH----------------HHGG-GCTTCCEEEEESC
T ss_pred             HH----------------HHHh-cCCCCCEEECCCC
Confidence            11                1133 5788999988643

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.41  E-value=7.7e-05  Score=64.24  Aligned_cols=82  Identities=27%  Similarity=0.266  Sum_probs=59.0

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.+++|.+.+..-    . ...+|.....+++|+.|+|.+..+ +.+.+..+++|++|+|.+-.+.+. +......+|+
T Consensus        16 ~~~l~~L~l~~n~l----~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~   89 (149)
T 2je0_A           16 PSDVKELVLDNSRS----N-EGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPN   89 (149)
T ss_dssp             GGGCSEEECTTCBC----B-TTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSC-THHHHHHCTT
T ss_pred             CccCeEEEccCCcC----C-hhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccch-HHHHhhhCCC
Confidence            36788998864321    1 123444455789999999997543 345678899999999998877653 5566677999


Q ss_pred             CCeEEEecc
Q 012979          205 LQVLNLVGV  213 (452)
Q Consensus       205 Le~L~L~~~  213 (452)
                      |++|+|.++
T Consensus        90 L~~L~ls~N   98 (149)
T 2je0_A           90 LTHLNLSGN   98 (149)
T ss_dssp             CCEEECTTS
T ss_pred             CCEEECCCC
Confidence            999999765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=97.39  E-value=0.0001  Score=64.75  Aligned_cols=54  Identities=20%  Similarity=0.158  Sum_probs=33.4

Q ss_pred             CCCcEEEeeceeec---CCC-CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          157 KSLVELEVKNAWLS---VDN-LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       157 ~~L~~L~L~~~~~d---~~~-l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ++|++|+|.++.+.   .+. +..+++|++|+|.+..+.+-   ..+..+|+|++|+|.++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N   81 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSEN   81 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESC
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCC
Confidence            56777887764332   232 35677777777776665543   33566777777777554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=97.38  E-value=9.3e-05  Score=72.15  Aligned_cols=81  Identities=19%  Similarity=0.172  Sum_probs=39.4

Q ss_pred             cCCceEEEeeecccccccccccccceec--ccCCCCcEEEeeceee-cCC-CCCCC-----CCCceeeeeeEeecchhHH
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFIS--SCCKSLVELEVKNAWL-SVD-NLNQM-----PMLTKLTLEFIRLEDEDLD  196 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~--~~c~~L~~L~L~~~~~-d~~-~l~~f-----p~Lr~L~L~~v~i~~~~L~  196 (452)
                      ...|++|++++..-      ...+|...  ..+++|++|+|.+..+ +.+ .+..+     ++|++|+|.+-.+..-.-.
T Consensus        94 l~~L~~L~L~~n~l------~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           94 ISGLQELTLENLEV------TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TSCCCEEEEEEEBC------BSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             cCCccEEEccCCcc------cchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            45677777763211      11122211  3456677777765322 211 12222     6667776666555432211


Q ss_pred             HHhccCCcCCeEEEecc
Q 012979          197 KVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       197 ~ll~~cP~Le~L~L~~~  213 (452)
                       .+..+++|++|+|.++
T Consensus       168 -~~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          168 -QVRVFPALSTLDLSDN  183 (312)
T ss_dssp             -TCCCCSSCCEEECCSC
T ss_pred             -HhccCCCCCEEECCCC
Confidence             1345666777766544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.33  E-value=0.0001  Score=73.41  Aligned_cols=206  Identities=15%  Similarity=0.094  Sum_probs=100.6

Q ss_pred             CceEEEeeecccccccccccccceeccc-CCCCcEEEeeceeecCCC-------CCCC-CCCceeeeeeEeecchhH---
Q 012979          128 ELKFLSISDCWFQSCWRKSEVLAFISSC-CKSLVELEVKNAWLSVDN-------LNQM-PMLTKLTLEFIRLEDEDL---  195 (452)
Q Consensus       128 ~L~eL~l~~~~~~~~~~~~~~L~~~~~~-c~~L~~L~L~~~~~d~~~-------l~~f-p~Lr~L~L~~v~i~~~~L---  195 (452)
                      .|++|+|++..-...  ....+...... +++|++|+|++..+...+       +..+ ++|++|+|.+-.+.+...   
T Consensus        52 ~L~~L~Ls~N~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  129 (362)
T 3goz_A           52 SVTSLNLSGNSLGFK--NSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF  129 (362)
T ss_dssp             TCCEEECCSSCGGGS--CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ceeEEECcCCCCCHH--HHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence            799999974321100  01111111122 378999999875443211       3345 789999998888875444   


Q ss_pred             HHHhcc-CCcCCeEEEecccccccCc---c-----cc-ccccEEEeeecC---Cc-ceE---EecC-CceeEEEeeeecC
Q 012979          196 DKVNDC-FPCLQVLNLVGVGGFRQPK---I-----HL-LHLKSCLWTVSN---AP-LSL---AIYA-PNLVKLELRCVKP  257 (452)
Q Consensus       196 ~~ll~~-cP~Le~L~L~~~~g~~~~~---l-----~~-~sLr~l~l~~s~---~~-~~l---~~~a-P~Le~L~l~~~~~  257 (452)
                      ...+.. ++.|++|+|.++. .....   +     .. ++|+.+.+.-..   .. ..+   .... ++|+.|++.....
T Consensus       130 ~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          130 KQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence            344555 4699999997653 21111   1     12 256666433211   00 000   0122 3677777643211


Q ss_pred             CceeeeCCccceEEEeecccccccccc-cCcccEEEEeecccc-----ccccccccCCceeEEEEEeccCC-CCcccccc
Q 012979          258 KSLVLQTPLLHDFCLSLEVANEIRFQE-FRNLMNLQLESSSLS-----SLINTFPFGKTIKKLKVELLKPG-EPIGMKNL  330 (452)
Q Consensus       258 ~~l~i~~p~L~~~~l~i~~~~~~~l~~-~~~L~~L~l~~~~~~-----~~~~l~~~~p~lkkL~L~~~~~~-~~~~~l~~  330 (452)
                      .     .....       ..+. .+.. ..+|++|+++...+.     .+..++..+++++.|.+.-.... .....+ .
T Consensus       209 ~-----~~~~~-------~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-~  274 (362)
T 3goz_A          209 G-----LKSYA-------ELAY-IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-K  274 (362)
T ss_dssp             G-----GSCHH-------HHHH-HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-H
T ss_pred             C-----hhHHH-------HHHH-HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH-H
Confidence            0     00000       0011 1222 358899999864432     22344567889999987543211 000000 0


Q ss_pred             ChhHHhhcCCCccEEEEccC
Q 012979          331 NLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       331 dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .+...+..+++|+.|++.+.
T Consensus       275 ~l~~~~~~l~~L~~LdL~~N  294 (362)
T 3goz_A          275 ALGAAFPNIQKIILVDKNGK  294 (362)
T ss_dssp             HHHTTSTTCCEEEEECTTSC
T ss_pred             HHHHHhccCCceEEEecCCC
Confidence            11233445556667777554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.29  E-value=0.00037  Score=64.88  Aligned_cols=55  Identities=20%  Similarity=0.122  Sum_probs=29.8

Q ss_pred             CCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          157 KSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       157 ~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ++|++|+|.+..+ .  +..+..+++|++|+|.+-.+..-. ...+..+|+|++|+|.+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~   97 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGT   97 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCS
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCC
Confidence            5677777775322 1  233566677777777665543211 12234466666666644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=97.28  E-value=4.9e-05  Score=72.57  Aligned_cols=160  Identities=11%  Similarity=0.074  Sum_probs=88.8

Q ss_pred             CCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCcc-ccccccEEEeeec
Q 012979          157 KSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKI-HLLHLKSCLWTVS  234 (452)
Q Consensus       157 ~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l-~~~sLr~l~l~~s  234 (452)
                      +.++.|+|++..+ +.+.+..+++|++|+|.+..+..-  .. ++.+++|++|+|.++.-...+.+ .+++|+.+.+.-.
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~~-l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--AG-MQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--TT-GGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--hH-HhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            3455566664222 333566889999999988777642  22 56799999999976531111112 2456666644322


Q ss_pred             CCcc--eEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccccccccccCCcee
Q 012979          235 NAPL--SLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIK  312 (452)
Q Consensus       235 ~~~~--~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lk  312 (452)
                      ....  .+. . ++|+.|++......                 ..+  .+.++++|++|+++...+..+ ..+..+++++
T Consensus        96 ~l~~l~~~~-~-~~L~~L~L~~N~l~-----------------~~~--~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~  153 (263)
T 1xeu_A           96 RLKNLNGIP-S-ACLSRLFLDNNELR-----------------DTD--SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLE  153 (263)
T ss_dssp             CCSCCTTCC-C-SSCCEEECCSSCCS-----------------BSG--GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCC
T ss_pred             ccCCcCccc-c-CcccEEEccCCccC-----------------CCh--hhcCcccccEEECCCCcCCCC-hHHccCCCCC
Confidence            1100  111 1 56666665432111                 111  355677888888876554432 3455677888


Q ss_pred             EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          313 KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       313 kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .|.+.-.. ..+       + ..+..+|+|+.|++.+.
T Consensus       154 ~L~L~~N~-i~~-------~-~~l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          154 VLDLHGNE-ITN-------T-GGLTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             EEECTTSC-CCB-------C-TTSTTCCCCCEEEEEEE
T ss_pred             EEECCCCc-Ccc-------h-HHhccCCCCCEEeCCCC
Confidence            87752211 111       1 34567788888888654

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.27  E-value=6.5e-05  Score=72.97  Aligned_cols=37  Identities=27%  Similarity=0.310  Sum_probs=33.8

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE   39 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~   39 (452)
                      ++.||+||+.+|+|+|+ ++|+++++.|||+||.+..+
T Consensus         5 l~~LP~ei~l~IlsfL~-p~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            5 LTRLPIDVQLYILSFLS-PHDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             HHHSCHHHHHHHHHTSC-HHHHHHHHTTCHHHHHHHTC
T ss_pred             hHhCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcc
Confidence            46899999999999995 99999999999999998654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=97.26  E-value=0.00026  Score=67.31  Aligned_cols=97  Identities=15%  Similarity=0.022  Sum_probs=58.7

Q ss_pred             CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccC--c-cccccccEEE
Q 012979          157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQP--K-IHLLHLKSCL  230 (452)
Q Consensus       157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~--~-l~~~sLr~l~  230 (452)
                      ++|++|+|.+..+   .+..+..+++|++|+|.+-.+..-.- ..++.++.|++|+|.++.-...+  . -.+++|+.+.
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED-GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCH-HHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            4799999997433   23367899999999998876653221 22466999999999765311111  1 2356777764


Q ss_pred             eeec---CCcceEEecCCceeEEEeee
Q 012979          231 WTVS---NAPLSLAIYAPNLVKLELRC  254 (452)
Q Consensus       231 l~~s---~~~~~l~~~aP~Le~L~l~~  254 (452)
                      +.-.   .......-..++|+.|++..
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~  133 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAH  133 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCS
T ss_pred             CCCCCccccCchhcccCCCCCEEECcC
Confidence            4321   11111122567777777743

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.24  E-value=7.4e-05  Score=67.52  Aligned_cols=85  Identities=12%  Similarity=0.210  Sum_probs=63.6

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeece-eecCCC---CCCC----CCCceeeeeeE-eecchhHHH
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNA-WLSVDN---LNQM----PMLTKLTLEFI-RLEDEDLDK  197 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~-~~d~~~---l~~f----p~Lr~L~L~~v-~i~~~~L~~  197 (452)
                      -.|++|+++++.-     .+..+..+. +|++|++|+|++| .+...+   +..+    ++|++|+|++. .|+|..+..
T Consensus        61 ~~L~~LDLs~~~I-----td~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~  134 (176)
T 3e4g_A           61 YKIQAIDATDSCI-----MSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA  134 (176)
T ss_dssp             CCEEEEEEESCCC-----CGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred             ceEeEEeCcCCCc-----cHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence            4689999986531     234555554 7999999999996 353233   3343    58999999874 699999988


Q ss_pred             HhccCCcCCeEEEeccccccc
Q 012979          198 VNDCFPCLQVLNLVGVGGFRQ  218 (452)
Q Consensus       198 ll~~cP~Le~L~L~~~~g~~~  218 (452)
                      + +.||+|++|+|.+|.++.+
T Consensus       135 L-~~~~~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          135 L-HHFRNLKYLFLSDLPGVKE  154 (176)
T ss_dssp             G-GGCTTCCEEEEESCTTCCC
T ss_pred             H-hcCCCCCEEECCCCCCCCc
Confidence            5 7899999999998866544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=97.18  E-value=6.6e-05  Score=64.67  Aligned_cols=54  Identities=17%  Similarity=0.099  Sum_probs=32.7

Q ss_pred             CCCcEEEeeceeec---CC-CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          157 KSLVELEVKNAWLS---VD-NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       157 ~~L~~L~L~~~~~d---~~-~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ++|++|+|.++.+.   .+ .+..+++|++|+|.+-.+.+-   ..+..+|.|++|+|.++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n   74 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDN   74 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSS
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCC
Confidence            56777887764332   22 246677777777766555543   33456677777777543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.15  E-value=0.00044  Score=69.52  Aligned_cols=85  Identities=22%  Similarity=0.239  Sum_probs=58.3

Q ss_pred             cCCceEEEeeecccc--c-ccccccccceecccCCCCcEEEeecee-ecCCCCCCCCCCceeeeeeEeecchhHHHHh-c
Q 012979          126 CEELKFLSISDCWFQ--S-CWRKSEVLAFISSCCKSLVELEVKNAW-LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVN-D  200 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~--~-~~~~~~~L~~~~~~c~~L~~L~L~~~~-~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll-~  200 (452)
                      .+.|++|.|.+....  . .|-....+......++.|++|+|++.. +..+.+ ..++|++|+|....+.++.+..+. +
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~  216 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDILGS  216 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence            479999998643110  0 011112344555678999999998742 333333 489999999998888888887764 3


Q ss_pred             cCCcCCeEEEe
Q 012979          201 CFPCLQVLNLV  211 (452)
Q Consensus       201 ~cP~Le~L~L~  211 (452)
                      .+|+|++|.|.
T Consensus       217 ~lp~L~~L~L~  227 (362)
T 2ra8_A          217 DLPNLEKLVLY  227 (362)
T ss_dssp             BCTTCCEEEEE
T ss_pred             cCCCCcEEEEe
Confidence            79999999995

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.15  E-value=0.00048  Score=63.73  Aligned_cols=54  Identities=15%  Similarity=0.188  Sum_probs=25.3

Q ss_pred             CCcEEEeeceee-c--C-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          158 SLVELEVKNAWL-S--V-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       158 ~L~~L~L~~~~~-d--~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      .+++|+|.+..+ .  + ..+..+++|++|+|.+-.++.-.- ..+..++.|++|+|.+
T Consensus        33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEE-GAFEGASGVNEILLTS   90 (220)
T ss_dssp             TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCS
T ss_pred             CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECH-HHhCCCCCCCEEECCC
Confidence            456666665221 1  1 124556666666665544432110 1123356666666643

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.14  E-value=0.0016  Score=69.48  Aligned_cols=177  Identities=15%  Similarity=0.036  Sum_probs=91.4

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      ...++.|++++..-.       .+|...  +++|+.|+|.+..+ ..+  ..+++|++|+|.+-.++.  +.. +  ..+
T Consensus        58 ~~~L~~L~Ls~n~L~-------~lp~~l--~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l--~~~  121 (571)
T 3cvr_A           58 INQFSELQLNRLNLS-------SLPDNL--PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-L--PAS  121 (571)
T ss_dssp             HTTCSEEECCSSCCS-------CCCSCC--CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-C--CTT
T ss_pred             cCCccEEEeCCCCCC-------ccCHhH--cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-h--hcC
Confidence            357889988743211       133322  36799999987433 334  567899999998776654  222 2  228


Q ss_pred             CCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccc
Q 012979          205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQE  284 (452)
Q Consensus       205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~  284 (452)
                      |++|+|.++.-...+. .+++|+.+.+.-.... .+....++|+.|++.....                 ...|.  +. 
T Consensus       122 L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~l~-~lp~~l~~L~~L~Ls~N~L-----------------~~lp~--l~-  179 (571)
T 3cvr_A          122 LKHLDVDNNQLTMLPE-LPALLEYINADNNQLT-MLPELPTSLEVLSVRNNQL-----------------TFLPE--LP-  179 (571)
T ss_dssp             CCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCC-----------------SCCCC--CC-
T ss_pred             CCEEECCCCcCCCCCC-cCccccEEeCCCCccC-cCCCcCCCcCEEECCCCCC-----------------CCcch--hh-
Confidence            9999997653222222 4556666644321110 0111345666666643211                 11122  11 


Q ss_pred             cCcccEEEEeeccccccccccccCCce-------eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979          285 FRNLMNLQLESSSLSSLINTFPFGKTI-------KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW  352 (452)
Q Consensus       285 ~~~L~~L~l~~~~~~~~~~l~~~~p~l-------kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~  352 (452)
                       .+|+.|+++...+..+.. +  .+++       +.|.+.-    +....    ++.-+..+|+|+.|++..+..
T Consensus       180 -~~L~~L~Ls~N~L~~lp~-~--~~~L~~~~~~L~~L~Ls~----N~l~~----lp~~l~~l~~L~~L~L~~N~l  242 (571)
T 3cvr_A          180 -ESLEALDVSTNLLESLPA-V--PVRNHHSEETEIFFRCRE----NRITH----IPENILSLDPTCTIILEDNPL  242 (571)
T ss_dssp             -TTCCEEECCSSCCSSCCC-C--C--------CCEEEECCS----SCCCC----CCGGGGGSCTTEEEECCSSSC
T ss_pred             -CCCCEEECcCCCCCchhh-H--HHhhhcccccceEEecCC----Cccee----cCHHHhcCCCCCEEEeeCCcC
Confidence             677777777544433222 1  1144       6666421    11111    233333488888888876544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=97.13  E-value=0.00014  Score=72.47  Aligned_cols=207  Identities=18%  Similarity=0.088  Sum_probs=108.0

Q ss_pred             cCCceEEEeeecccccccccccccceecccCC-CCcEEEeeceeecCC---CCCC-----CCCCceeeeeeEeecc---h
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCK-SLVELEVKNAWLSVD---NLNQ-----MPMLTKLTLEFIRLED---E  193 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~-~L~~L~L~~~~~d~~---~l~~-----fp~Lr~L~L~~v~i~~---~  193 (452)
                      .++|++|+|++..-...  ....+......++ +|++|+|.+..+...   .+..     +++|++|+|.+..+++   .
T Consensus        21 ~~~L~~L~Ls~n~l~~~--~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~   98 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSI--STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD   98 (362)
T ss_dssp             CTTCCEEECTTSCGGGS--CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred             CCCceEEEccCCCCChH--HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence            45699999974321100  0001112223566 899999997544322   2222     3999999999888864   4


Q ss_pred             hHHHHhccC-CcCCeEEEecccccccCc------cc--cccccEEEeeecCCc----ceE---EecCC-ceeEEEeeeec
Q 012979          194 DLDKVNDCF-PCLQVLNLVGVGGFRQPK------IH--LLHLKSCLWTVSNAP----LSL---AIYAP-NLVKLELRCVK  256 (452)
Q Consensus       194 ~L~~ll~~c-P~Le~L~L~~~~g~~~~~------l~--~~sLr~l~l~~s~~~----~~l---~~~aP-~Le~L~l~~~~  256 (452)
                      .+...+..+ +.|++|+|.++.-...+.      +.  .++|+.+.+.-....    ..+   ....| +|++|++....
T Consensus        99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~  178 (362)
T 3goz_A           99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN  178 (362)
T ss_dssp             HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC
T ss_pred             HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCC
Confidence            455556666 899999997653111111      11  136666644321100    000   01223 67777664321


Q ss_pred             CCceeeeCCccceEEEeeccccccccccc-CcccEEEEeeccccc-----ccccccc-CCceeEEEEEeccCCCCccccc
Q 012979          257 PKSLVLQTPLLHDFCLSLEVANEIRFQEF-RNLMNLQLESSSLSS-----LINTFPF-GKTIKKLKVELLKPGEPIGMKN  329 (452)
Q Consensus       257 ~~~l~i~~p~L~~~~l~i~~~~~~~l~~~-~~L~~L~l~~~~~~~-----~~~l~~~-~p~lkkL~L~~~~~~~~~~~l~  329 (452)
                      ..     ......+.        -.+..+ .+|++|+++...+..     +...+.. .++++.|.+.-.. ..+...  
T Consensus       179 l~-----~~~~~~l~--------~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~--  242 (362)
T 3goz_A          179 LA-----SKNCAELA--------KFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSL--  242 (362)
T ss_dssp             GG-----GSCHHHHH--------HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCH--
T ss_pred             Cc-----hhhHHHHH--------HHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHH--
Confidence            10     00000000        022334 489999998644433     3333443 4689998864321 111111  


Q ss_pred             cChhHHhhcCCCccEEEEccC
Q 012979          330 LNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       330 ~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      ..+..+++.+++|++|++...
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHH
T ss_pred             HHHHHHHhcCCCccEEEeccC
Confidence            112466788899999999765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=97.12  E-value=0.0007  Score=61.53  Aligned_cols=57  Identities=23%  Similarity=0.216  Sum_probs=34.6

Q ss_pred             CCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          156 CKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       156 c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      .++|++|+|.+..+ ..  ..+..+++|++|+|.+-.+..-. ...++.++.|++|+|.++
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC-hhhcCCCCCcCEEECCCC
Confidence            35788888886333 22  22567788888888766554211 123455778888877553

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=97.11  E-value=0.0013  Score=67.82  Aligned_cols=9  Identities=11%  Similarity=0.390  Sum_probs=5.9

Q ss_pred             CCceEEEEe
Q 012979           82 RHLESVSIG   90 (452)
Q Consensus        82 ~~l~~L~L~   90 (452)
                      ..++.|+++
T Consensus        71 ~~l~~L~l~   79 (454)
T 1jl5_A           71 RQAHELELN   79 (454)
T ss_dssp             HTCSEEECT
T ss_pred             cCCCEEEec
Confidence            456777666

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=97.05  E-value=0.00014  Score=64.65  Aligned_cols=55  Identities=11%  Similarity=0.072  Sum_probs=27.1

Q ss_pred             cCCCCcEEEeeceee-cCCCCCCC-CCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          155 CCKSLVELEVKNAWL-SVDNLNQM-PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~-d~~~l~~f-p~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      .|.+|++|+|.+..+ ..+.+..+ |+|++|+|.+-.+.+-   .-+..+|.|++|+|.+
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~   73 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNN   73 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCS
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCC
Confidence            455666777665322 22333333 3566666655444431   1234455555555543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=97.03  E-value=0.0006  Score=66.20  Aligned_cols=183  Identities=19%  Similarity=0.180  Sum_probs=100.0

Q ss_pred             hcCCceEEEeeecccccccccccccc-eecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecc-hhHH--H
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLA-FISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLED-EDLD--K  197 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~-~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~-~~L~--~  197 (452)
                      ....|++|++++.....   ....++ .....+++|++|+|.+..+ .  +..+..+++|++|+|.+-.+.. ..+.  .
T Consensus       115 ~~~~L~~L~Ls~n~i~~---~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  191 (310)
T 4glp_A          115 TGLALSSLRLRNVSWAT---GRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL  191 (310)
T ss_dssp             CCBCCSSCEEESCCCSS---TTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS
T ss_pred             cCCCCCEEEeecccccc---hhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH
Confidence            35678999997432110   001111 1123688999999997433 2  2356789999999999876543 2232  2


Q ss_pred             HhccCCcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccc
Q 012979          198 VNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVA  277 (452)
Q Consensus       198 ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~  277 (452)
                      .+..+|+|++|+|.++. ....              ......+.-..++|+.|++........   .|  ..        
T Consensus       192 ~~~~l~~L~~L~Ls~N~-l~~l--------------~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~p--~~--------  243 (310)
T 4glp_A          192 CPHKFPAIQNLALRNTG-METP--------------TGVCAALAAAGVQPHSLDLSHNSLRAT---VN--PS--------  243 (310)
T ss_dssp             CTTSSCCCCSCBCCSSC-CCCH--------------HHHHHHHHHHTCCCSSEECTTSCCCCC---CC--SC--------
T ss_pred             hhhcCCCCCEEECCCCC-CCch--------------HHHHHHHHhcCCCCCEEECCCCCCCcc---ch--hh--------
Confidence            23578999999997653 1110              000001112557888888753321100   00  00        


Q ss_pred             ccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          278 NEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       278 ~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                       ...+.++++|+.|+++...+..+...+  .++++.|.+.-..    ..-+     ..+..+|+|++|++.++
T Consensus       244 -~~~~~~~~~L~~L~Ls~N~l~~lp~~~--~~~L~~L~Ls~N~----l~~~-----~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          244 -APRCMWSSALNSLNLSFAGLEQVPKGL--PAKLRVLDLSSNR----LNRA-----PQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             -CSSCCCCTTCCCEECCSSCCCSCCSCC--CSCCSCEECCSCC----CCSC-----CCTTSCCCCSCEECSST
T ss_pred             -HHhccCcCcCCEEECCCCCCCchhhhh--cCCCCEEECCCCc----CCCC-----chhhhCCCccEEECcCC
Confidence             012223367888888765544332222  3688887753221    1111     12467899999999765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.96  E-value=0.00083  Score=62.09  Aligned_cols=55  Identities=13%  Similarity=0.219  Sum_probs=28.8

Q ss_pred             CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ++|++|+|.+..+   .+..+..+++|++|+|.+-.+..-.- ..+..+++|++|+|.+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-~~~~~l~~L~~L~Ls~   89 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAP-DAFQGLRSLNSLVLYG   89 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECT-TTTTTCSSCCEEECCS
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-HHhhCCcCCCEEECCC
Confidence            4566777765222   22345666777777776554432111 1123466666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=96.93  E-value=5.3e-05  Score=68.82  Aligned_cols=60  Identities=17%  Similarity=0.154  Sum_probs=36.1

Q ss_pred             ecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          152 ISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       152 ~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ....+++|++|+|.+..+ +.+.+..+++|++|+|.+-.+.  ++......+|.|++|+|.++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~--~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIK--KIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEEC--SCSSHHHHHHHCSEEEEEEE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcc--cccchhhcCCcCCEEECcCC
Confidence            344567777777776433 3345556677777777776665  23334444677777777543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.91  E-value=0.00063  Score=67.72  Aligned_cols=154  Identities=15%  Similarity=0.072  Sum_probs=77.0

Q ss_pred             CCCcEEEeeceee---cCCCCC-CCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979          157 KSLVELEVKNAWL---SVDNLN-QMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT  232 (452)
Q Consensus       157 ~~L~~L~L~~~~~---d~~~l~-~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~  232 (452)
                      +.++.|+|.+..+   ....+. .+++|++|+|.+-.+..-.- ..+..++.|++|+|.++. ...          +   
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~-~~~~~l~~L~~L~Ls~N~-l~~----------~---  103 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISS-EAFVPVPNLRYLDLSSNH-LHT----------L---  103 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSC-CCE----------E---
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccCh-hhccCCCCCCEEECCCCc-CCc----------C---
Confidence            3567777775322   122344 67777777777655542111 123457777777775532 100          0   


Q ss_pred             ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeeccccccc-ccc---ccC
Q 012979          233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSLI-NTF---PFG  308 (452)
Q Consensus       233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~l~---~~~  308 (452)
                       ..  ..+ ...++|+.|++......          .       .+.-.+.++.+|+.|+++...+..+. .++   ..+
T Consensus       104 -~~--~~~-~~l~~L~~L~L~~N~i~----------~-------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l  162 (361)
T 2xot_A          104 -DE--FLF-SDLQALEVLLLYNNHIV----------V-------VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKL  162 (361)
T ss_dssp             -CT--TTT-TTCTTCCEEECCSSCCC----------E-------ECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----C
T ss_pred             -CH--HHh-CCCcCCCEEECCCCccc----------E-------ECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccC
Confidence             00  001 14567777776432111          0       01123456677777777754433221 112   346


Q ss_pred             CceeEEEEEeccCCCCccccccChhHHhhcCCC--ccEEEEccCchh
Q 012979          309 KTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPN--LSSLTLGPRAWS  353 (452)
Q Consensus       309 p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~Pn--L~~L~I~~~~~~  353 (452)
                      ++|+.|.|.-..    ...+   +...+..+|+  |+.|++.++.|.
T Consensus       163 ~~L~~L~L~~N~----l~~l---~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          163 PKLMLLDLSSNK----LKKL---PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             TTCCEEECCSSC----CCCC---CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CcCCEEECCCCC----CCcc---CHHHhhhccHhhcceEEecCCCcc
Confidence            778887753221    1111   1245666776  478888887664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=96.89  E-value=0.0008  Score=61.14  Aligned_cols=81  Identities=21%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC--CCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD--NLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~--~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      .+.+++|++.+..-      ....+.....+++|++|+|.+..+ ..+  .+..+++|++|+|.+-.+..-. ...+..+
T Consensus        27 ~~~l~~L~l~~n~l------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l   99 (208)
T 2o6s_A           27 PAQTTYLDLETNSL------KSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLP-NGVFDKL   99 (208)
T ss_dssp             CTTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred             CCCCcEEEcCCCcc------CcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccC-HhHhcCc
Confidence            35788888864321      111122234678888888886332 222  2567888888888876665211 1224568


Q ss_pred             CcCCeEEEecc
Q 012979          203 PCLQVLNLVGV  213 (452)
Q Consensus       203 P~Le~L~L~~~  213 (452)
                      +.|++|+|.++
T Consensus       100 ~~L~~L~L~~N  110 (208)
T 2o6s_A          100 TQLKELALNTN  110 (208)
T ss_dssp             TTCCEEECCSS
T ss_pred             cCCCEEEcCCC
Confidence            88888888653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=96.83  E-value=0.0048  Score=63.49  Aligned_cols=50  Identities=14%  Similarity=0.161  Sum_probs=24.8

Q ss_pred             cccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          287 NLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       287 ~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +|++|+++...+..   +-..+++++.|.+.-.    ....    ++.   .+++|++|++...
T Consensus       318 ~L~~L~Ls~N~l~~---lp~~~~~L~~L~L~~N----~l~~----lp~---~l~~L~~L~L~~N  367 (454)
T 1jl5_A          318 SLEELNVSNNKLIE---LPALPPRLERLIASFN----HLAE----VPE---LPQNLKQLHVEYN  367 (454)
T ss_dssp             TCCEEECCSSCCSC---CCCCCTTCCEEECCSS----CCSC----CCC---CCTTCCEEECCSS
T ss_pred             cCCEEECCCCcccc---ccccCCcCCEEECCCC----cccc----ccc---hhhhccEEECCCC
Confidence            66666666433322   1122466777664211    1111    122   3578888888654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.81  E-value=0.022  Score=56.05  Aligned_cols=204  Identities=18%  Similarity=0.128  Sum_probs=103.4

Q ss_pred             CCceEEEeeecccccccccccccce-ecccCCCCcEEEeecee----ecCCCCCCCCCCceeee-eeE---eecchhHHH
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNAW----LSVDNLNQMPMLTKLTL-EFI---RLEDEDLDK  197 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~~----~d~~~l~~fp~Lr~L~L-~~v---~i~~~~L~~  197 (452)
                      +++++|+|++..-       ..+|. ...++++|++|+|.+..    ++...+..+++|+++.. .+-   .+.+..   
T Consensus        30 ~~l~~L~Ls~N~i-------~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~---   99 (350)
T 4ay9_X           30 RNAIELRFVLTKL-------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEA---   99 (350)
T ss_dssp             TTCSEEEEESCCC-------SEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTS---
T ss_pred             CCCCEEEccCCcC-------CCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchh---
Confidence            5789999974311       12333 23468899999998632    33334667787776444 322   223343   


Q ss_pred             HhccCCcCCeEEEecccccccCc---cccccccEEEeeecCCcc--eE-----EecCCceeEEEeeeecCCceee---eC
Q 012979          198 VNDCFPCLQVLNLVGVGGFRQPK---IHLLHLKSCLWTVSNAPL--SL-----AIYAPNLVKLELRCVKPKSLVL---QT  264 (452)
Q Consensus       198 ll~~cP~Le~L~L~~~~g~~~~~---l~~~sLr~l~l~~s~~~~--~l-----~~~aP~Le~L~l~~~~~~~l~i---~~  264 (452)
                       +..+|+|++|.+.++.-...+.   ..+.++..+  .+.+...  .+     .-....|+.|.+.........-   ..
T Consensus       100 -f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l--~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~  176 (350)
T 4ay9_X          100 -FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL--DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNG  176 (350)
T ss_dssp             -BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEE--EEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTT
T ss_pred             -hhhccccccccccccccccCCchhhcccchhhhh--hhccccccccccccchhhcchhhhhhccccccccCCChhhccc
Confidence             4569999999997653222222   233344444  2222111  11     1112457777775432221100   11


Q ss_pred             CccceEEEe----ecccccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCC
Q 012979          265 PLLHDFCLS----LEVANEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFP  340 (452)
Q Consensus       265 p~L~~~~l~----i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~P  340 (452)
                      ..+..+.+.    ++..+.-.+.++.+|++|+++...+..+-.  ....++++|.+. ..  ..-+.    ++ -+..++
T Consensus       177 ~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l-~~--~~l~~----lP-~l~~l~  246 (350)
T 4ay9_X          177 TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRAR-ST--YNLKK----LP-TLEKLV  246 (350)
T ss_dssp             EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECT-TC--TTCCC----CC-CTTTCC
T ss_pred             cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhc-cC--CCcCc----CC-CchhCc
Confidence            122222211    112233345678899999998654433211  234566665531 11  11111    22 367899


Q ss_pred             CccEEEEccCchhh
Q 012979          341 NLSSLTLGPRAWSA  354 (452)
Q Consensus       341 nL~~L~I~~~~~~~  354 (452)
                      +|+.+++. ..|++
T Consensus       247 ~L~~l~l~-~~~~c  259 (350)
T 4ay9_X          247 ALMEASLT-YPSHC  259 (350)
T ss_dssp             SCCEEECS-CHHHH
T ss_pred             ChhhCcCC-CCccc
Confidence            99999995 44443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.81  E-value=0.0017  Score=68.34  Aligned_cols=57  Identities=16%  Similarity=-0.032  Sum_probs=32.4

Q ss_pred             cCCCCcEEEeecee---ecC--CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          155 CCKSLVELEVKNAW---LSV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       155 ~c~~L~~L~L~~~~---~d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      .+++|+.|++.+..   ...  .....+++|++|++....+....  .-...++.|+.+.+.++
T Consensus       369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~l~l~~~  430 (635)
T 4g8a_A          369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMS--SNFLGLEQLEHLDFQHS  430 (635)
T ss_dssp             BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEEC--SCCTTCTTCCEEECTTS
T ss_pred             cccccccchhhccccccccccccchhhhhhhhhhhcccccccccc--ccccccccccchhhhhc
Confidence            46778888887521   111  12345677888877655443211  12345788888887543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=96.71  E-value=0.0013  Score=69.41  Aligned_cols=130  Identities=18%  Similarity=0.093  Sum_probs=75.1

Q ss_pred             CCceEEEeeecccccccccccccc-eecccCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLA-FISSCCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~-~~~~~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      .++++|+|++..-       ..++ ....++++|++|+|++..   +++..+..+++|++|+|.+-.+..-.- ..+.++
T Consensus        52 ~~~~~LdLs~N~i-------~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~-~~f~~L  123 (635)
T 4g8a_A           52 FSTKNLDLSFNPL-------RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL-GAFSGL  123 (635)
T ss_dssp             TTCCEEECTTSCC-------CEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECG-GGGTTC
T ss_pred             cCCCEEEeeCCCC-------CCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCH-HHhcCC
Confidence            4688888863211       1122 223467888999988643   334457788889998888765542111 224568


Q ss_pred             CcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccc
Q 012979          203 PCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRF  282 (452)
Q Consensus       203 P~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l  282 (452)
                      ++|++|+|.++. ..                 .......-..++|+.|++......          .+.     .+ -.+
T Consensus       124 ~~L~~L~Ls~N~-l~-----------------~l~~~~~~~L~~L~~L~Ls~N~l~----------~~~-----~~-~~~  169 (635)
T 4g8a_A          124 SSLQKLVAVETN-LA-----------------SLENFPIGHLKTLKELNVAHNLIQ----------SFK-----LP-EYF  169 (635)
T ss_dssp             TTCCEEECTTSC-CC-----------------CSTTCCCTTCTTCCEEECCSSCCC----------CCC-----CC-GGG
T ss_pred             CCCCEEECCCCc-CC-----------------CCChhhhhcCcccCeeccccCccc----------cCC-----Cc-hhh
Confidence            888888886542 11                 111111126788999998533211          100     01 134


Q ss_pred             cccCcccEEEEeeccc
Q 012979          283 QEFRNLMNLQLESSSL  298 (452)
Q Consensus       283 ~~~~~L~~L~l~~~~~  298 (452)
                      .++.+|++|+++...+
T Consensus       170 ~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          170 SNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             GGCTTCCEEECCSSCC
T ss_pred             ccchhhhhhcccCccc
Confidence            5678999999986443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=96.63  E-value=0.0021  Score=59.69  Aligned_cols=81  Identities=19%  Similarity=0.116  Sum_probs=53.3

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      ...++.|+|++...      ....+.....+++|++|+|.+..+ ..  ..+..+++|++|+|.+-.+..-. ...+..+
T Consensus        39 ~~~L~~L~Ls~n~i------~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~~~~l  111 (229)
T 3e6j_A           39 PTNAQILYLHDNQI------TKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP-SAVFDRL  111 (229)
T ss_dssp             CTTCSEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred             CCCCCEEEcCCCcc------CccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccC-hhHhCcc
Confidence            37788999974321      112233344678999999997433 22  23678899999999887665311 1234568


Q ss_pred             CcCCeEEEecc
Q 012979          203 PCLQVLNLVGV  213 (452)
Q Consensus       203 P~Le~L~L~~~  213 (452)
                      ++|++|+|.++
T Consensus       112 ~~L~~L~Ls~N  122 (229)
T 3e6j_A          112 VHLKELFMCCN  122 (229)
T ss_dssp             TTCCEEECCSS
T ss_pred             hhhCeEeccCC
Confidence            99999999764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=96.56  E-value=0.0026  Score=58.73  Aligned_cols=80  Identities=18%  Similarity=0.135  Sum_probs=53.3

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      +.+++|.+.+..-      ....+.....+++|+.|+|++..   +.+..+..+++|++|+|.+-.+..-. ..++..++
T Consensus        32 ~~l~~L~l~~n~i------~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~  104 (220)
T 2v9t_B           32 ETITEIRLEQNTI------KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP-KSLFEGLF  104 (220)
T ss_dssp             TTCCEEECCSSCC------CEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred             cCCCEEECCCCcC------CCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccC-HhHccCCC
Confidence            6788998864321      11112123467899999999743   33456888999999999887665211 12346689


Q ss_pred             cCCeEEEecc
Q 012979          204 CLQVLNLVGV  213 (452)
Q Consensus       204 ~Le~L~L~~~  213 (452)
                      +|++|+|.++
T Consensus       105 ~L~~L~L~~N  114 (220)
T 2v9t_B          105 SLQLLLLNAN  114 (220)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            9999999764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.53  E-value=0.0011  Score=66.93  Aligned_cols=37  Identities=27%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             CCCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979            1 MEEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK   38 (452)
Q Consensus         1 ~~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~   38 (452)
                      +++.||+|++.+|+++|+ ++|+++++.+||+|+.+..
T Consensus        18 ~~~~lp~e~~~~i~~~l~-~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           18 FISLLPKELALYVLSFLE-PKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             TTTSSCHHHHHHHHTTSC-HHHHHHHTTSCHHHHHHHT
T ss_pred             hhHHCCHHHHHHHHHhCC-HHHHHHHHHHhHHHHhhcC
Confidence            467899999999999995 9999999999999999754

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=96.52  E-value=0.0021  Score=59.36  Aligned_cols=56  Identities=18%  Similarity=0.165  Sum_probs=24.3

Q ss_pred             cCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEe
Q 012979          155 CCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLV  211 (452)
Q Consensus       155 ~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~  211 (452)
                      .+++|+.|+|.+..   +.+..+..+++|++|+|.+-.+..-.- ..+..++.|++|+|.
T Consensus        55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls  113 (220)
T 2v70_A           55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH-KMFKGLESLKTLMLR  113 (220)
T ss_dssp             GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG-GGGTTCSSCCEEECT
T ss_pred             cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH-hHhcCCcCCCEEECC
Confidence            34555555555421   112234455555555555444432111 112335555555553

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=96.48  E-value=0.0076  Score=64.11  Aligned_cols=108  Identities=18%  Similarity=0.092  Sum_probs=70.4

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .+.|+.|+|++..-       ..+|   ..+++|+.|+|.+..+ ..+.+.  .+|++|+|.+-.++.  +..   .+++
T Consensus        79 ~~~L~~L~Ls~N~l-------~~ip---~~l~~L~~L~Ls~N~l~~ip~l~--~~L~~L~Ls~N~l~~--lp~---~l~~  141 (571)
T 3cvr_A           79 PPQITVLEITQNAL-------ISLP---ELPASLEYLDACDNRLSTLPELP--ASLKHLDVDNNQLTM--LPE---LPAL  141 (571)
T ss_dssp             CTTCSEEECCSSCC-------SCCC---CCCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSC--CCC---CCTT
T ss_pred             cCCCCEEECcCCCC-------cccc---cccCCCCEEEccCCCCCCcchhh--cCCCEEECCCCcCCC--CCC---cCcc
Confidence            47899999974321       1344   3478999999997433 233322  299999999877764  222   5899


Q ss_pred             CCeEEEecccccccCccccccccEEEeeec---CCcceEEecCCceeEEEeeee
Q 012979          205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCV  255 (452)
Q Consensus       205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~  255 (452)
                      |++|+|.++.-...+. .+++|+.+.+.-.   ..+.   +. ++|+.|++...
T Consensus       142 L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~---l~-~~L~~L~Ls~N  190 (571)
T 3cvr_A          142 LEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPE---LP-ESLEALDVSTN  190 (571)
T ss_dssp             CCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC---CC-TTCCEEECCSS
T ss_pred             ccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcch---hh-CCCCEEECcCC
Confidence            9999997764222333 5678999865432   2222   22 89999998543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=96.46  E-value=0.0073  Score=59.57  Aligned_cols=56  Identities=14%  Similarity=0.119  Sum_probs=35.6

Q ss_pred             CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      +++++|+|.+..+   ....+..+++|++|+|.+-.+.+.-=......++.|+++.+.+
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            5799999997433   2335788999999999875442110011234578887766544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=96.45  E-value=0.0014  Score=58.05  Aligned_cols=80  Identities=13%  Similarity=0.166  Sum_probs=48.3

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      ...+++|.+.+..-    .   .++.+...+++|+.|+|++..+ +.+.+..+++|++|+|.+-.+..-. ..+...+|.
T Consensus        18 ~~~L~~L~l~~n~l----~---~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~   89 (176)
T 1a9n_A           18 AVRDRELDLRGYKI----P---VIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPD   89 (176)
T ss_dssp             TTSCEEEECTTSCC----C---SCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTT
T ss_pred             cCCceEEEeeCCCC----c---hhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCC
Confidence            45677887764321    1   1233333344788888886433 3356777888888888877665311 122345888


Q ss_pred             CCeEEEecc
Q 012979          205 LQVLNLVGV  213 (452)
Q Consensus       205 Le~L~L~~~  213 (452)
                      |++|+|.++
T Consensus        90 L~~L~L~~N   98 (176)
T 1a9n_A           90 LTELILTNN   98 (176)
T ss_dssp             CCEEECCSC
T ss_pred             CCEEECCCC
Confidence            888888654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.42  E-value=0.0014  Score=66.11  Aligned_cols=36  Identities=25%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             CCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc
Q 012979            3 EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE   39 (452)
Q Consensus         3 s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~   39 (452)
                      +.||+||+.+|+|+|+ ++|+++|+.|||+|+.+...
T Consensus        16 ~~lp~~~~~~i~~~l~-~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQ-FEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             HHSCHHHHHHHHTTSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred             HHCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHHcC
Confidence            4699999999999995 99999999999999998644

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.39  E-value=0.004  Score=66.21  Aligned_cols=125  Identities=18%  Similarity=0.114  Sum_probs=75.2

Q ss_pred             CCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecC
Q 012979          178 PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKP  257 (452)
Q Consensus       178 p~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~  257 (452)
                      .+|++|+|.+-.++.  +.. +..+++|++|+|.++. ..                 ..+..+. ..++|++|++.....
T Consensus       441 ~~L~~L~Ls~n~l~~--lp~-~~~l~~L~~L~Ls~N~-l~-----------------~lp~~~~-~l~~L~~L~Ls~N~l  498 (567)
T 1dce_A          441 ADVRVLHLAHKDLTV--LCH-LEQLLLVTHLDLSHNR-LR-----------------ALPPALA-ALRCLEVLQASDNAL  498 (567)
T ss_dssp             TTCSEEECTTSCCSS--CCC-GGGGTTCCEEECCSSC-CC-----------------CCCGGGG-GCTTCCEEECCSSCC
T ss_pred             cCceEEEecCCCCCC--CcC-ccccccCcEeecCccc-cc-----------------ccchhhh-cCCCCCEEECCCCCC
Confidence            358888888776654  333 5678999999997642 11                 1111222 567888888743221


Q ss_pred             CceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc--ccccccCCceeEEEEEeccCCCCccccccChhHH
Q 012979          258 KSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL--INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVL  335 (452)
Q Consensus       258 ~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~l  335 (452)
                                       ...|  .+.++++|+.|+++...+..+  ...+..+++|+.|.+.-..    ..........+
T Consensus       499 -----------------~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~----l~~~~~~~~~l  555 (567)
T 1dce_A          499 -----------------ENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS----LCQEEGIQERL  555 (567)
T ss_dssp             -----------------CCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG----GGGSSSCTTHH
T ss_pred             -----------------CCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCc----CCCCccHHHHH
Confidence                             1122  456788888898886555544  3455678888887763221    11110112356


Q ss_pred             hhcCCCccEEEE
Q 012979          336 FDVFPNLSSLTL  347 (452)
Q Consensus       336 L~~~PnL~~L~I  347 (452)
                      +..+|+|+.|++
T Consensus       556 ~~~lp~L~~L~l  567 (567)
T 1dce_A          556 AEMLPSVSSILT  567 (567)
T ss_dssp             HHHCTTCSEEEC
T ss_pred             HHHCcccCccCC
Confidence            777899998863

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.30  E-value=0.0012  Score=66.49  Aligned_cols=35  Identities=29%  Similarity=0.385  Sum_probs=31.9

Q ss_pred             CCCcHH----HHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979            3 EHLPQP----LILEILSRLTDSADLARCRVVSKTLNSLCK   38 (452)
Q Consensus         3 s~LPd~----lL~~ILS~L~~~kD~arts~lSkrWr~l~~   38 (452)
                      +.||+|    |+.+||++| |++|++++++|||+|+.+..
T Consensus        12 ~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~   50 (435)
T 1p22_A           12 TALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS   50 (435)
T ss_dssp             HHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred             HHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence            569999    999999999 59999999999999997753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.27  E-value=0.0014  Score=58.93  Aligned_cols=130  Identities=16%  Similarity=0.100  Sum_probs=82.5

Q ss_pred             CCCcHHHHHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeeccccccccc
Q 012979           66 RVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRK  145 (452)
Q Consensus        66 ~~~~~~~~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~  145 (452)
                      ....+.+++..++...+.+++|+|..+..+++.               ....+..-+ .....|++|+|++..-..  ..
T Consensus        20 ~~~~~~~~l~~~l~~~~~L~~L~L~~n~~i~~~---------------g~~~l~~~L-~~~~~L~~L~Ls~n~i~~--~g   81 (185)
T 1io0_A           20 NSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVP---------------TLKACAEAL-KTNTYVKKFSIVGTRSND--PV   81 (185)
T ss_dssp             CCCCHHHHHHHHHTTCTTCCEEECTTCTTCCHH---------------HHHHHHHHH-TTCCSCCEEECTTSCCCH--HH
T ss_pred             CccHHHHHHHHHHhcCCCCCEEEecCCCCCCHH---------------HHHHHHHHH-HhCCCcCEEECcCCCCCh--HH
Confidence            346677888889999999999999732111100               011121111 125789999997431100  00


Q ss_pred             ccccceecccCCCCcEEEeeceeecCC-------CCCCCCCCceeee--eeEeecchh---HHHHhccCCcCCeEEEecc
Q 012979          146 SEVLAFISSCCKSLVELEVKNAWLSVD-------NLNQMPMLTKLTL--EFIRLEDED---LDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       146 ~~~L~~~~~~c~~L~~L~L~~~~~d~~-------~l~~fp~Lr~L~L--~~v~i~~~~---L~~ll~~cP~Le~L~L~~~  213 (452)
                      ...+.-....+++|++|+|++..+...       .+...++|++|+|  .+-.|.++.   +...+..++.|++|+|.++
T Consensus        82 ~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           82 AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            112233334567899999998655322       2456789999999  777887654   6777888999999999754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.19  E-value=0.0048  Score=61.24  Aligned_cols=147  Identities=21%  Similarity=0.189  Sum_probs=85.7

Q ss_pred             cEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhc-cCCcCCeEEEecccccccCccccccccEEEeeecCCc
Q 012979          160 VELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVND-CFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAP  237 (452)
Q Consensus       160 ~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~-~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~  237 (452)
                      +.+++.+.-+ ..|. .-.++|++|+|.+-.++.-.-.. +. .+++|++|+|.++. ...              +..  
T Consensus        21 ~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~-~~~~l~~L~~L~L~~N~-i~~--------------i~~--   81 (361)
T 2xot_A           21 NILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEW-TPTRLTNLHSLLLSHNH-LNF--------------ISS--   81 (361)
T ss_dssp             TEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTS-SSSCCTTCCEEECCSSC-CCE--------------ECT--
T ss_pred             CEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhh-hhhcccccCEEECCCCc-CCc--------------cCh--
Confidence            5667665322 2222 23467999999887776432222 23 79999999996542 110              000  


Q ss_pred             ceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc-ccccccCCceeEEEE
Q 012979          238 LSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKV  316 (452)
Q Consensus       238 ~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L  316 (452)
                      ..+. ..++|++|++.....          ..       .+.-.+.++.+|++|+++...+..+ ...+..+++|+.|.|
T Consensus        82 ~~~~-~l~~L~~L~Ls~N~l----------~~-------~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L  143 (361)
T 2xot_A           82 EAFV-PVPNLRYLDLSSNHL----------HT-------LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL  143 (361)
T ss_dssp             TTTT-TCTTCCEEECCSSCC----------CE-------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hhcc-CCCCCCEEECCCCcC----------Cc-------CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence            0122 568899999854321          11       1122456788999999987555433 234667899999886


Q ss_pred             EeccCCCCccccccChhHHh---hcCCCccEEEEccC
Q 012979          317 ELLKPGEPIGMKNLNLGVLF---DVFPNLSSLTLGPR  350 (452)
Q Consensus       317 ~~~~~~~~~~~l~~dl~~lL---~~~PnL~~L~I~~~  350 (452)
                      .-..    ...+   +..++   ..+|+|+.|++...
T Consensus       144 ~~N~----l~~l---~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A          144 SQNQ----ISRF---PVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CSSC----CCSC---CGGGTC----CTTCCEEECCSS
T ss_pred             CCCc----CCee---CHHHhcCcccCCcCCEEECCCC
Confidence            4221    1111   12333   67999999999765

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.13  E-value=0.0067  Score=59.25  Aligned_cols=60  Identities=13%  Similarity=0.045  Sum_probs=38.4

Q ss_pred             ccccccCccc-EEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEE
Q 012979          280 IRFQEFRNLM-NLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTL  347 (452)
Q Consensus       280 ~~l~~~~~L~-~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I  347 (452)
                      -.+.+|.+|+ ++.+.. ....+ ...+..|++|+.|.+. +.....   +   ....+..+++|++++.
T Consensus       267 ~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~-~n~i~~---I---~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          267 RVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLAT-GDKITT---L---GDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEEC-SSCCCE---E---CTTTTCTTCCCCEEEC
T ss_pred             HHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeC-CCccCc---c---chhhhcCCcchhhhcc
Confidence            4677888998 999974 33322 3557789999998752 111111   1   0245678899998874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=96.08  E-value=0.029  Score=54.61  Aligned_cols=64  Identities=16%  Similarity=0.168  Sum_probs=42.8

Q ss_pred             ccccccccCcccEEEEeecccccc-ccccccCCcee-EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          278 NEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIK-KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       278 ~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lk-kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      +.-.+.+|.+|+++++... +..+ ...+..|++|+ .|.+  +.......      ..-+..|++|++|++.+.
T Consensus       242 ~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l--~~~l~~I~------~~aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          242 PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLEL--PASVTAIE------FGAFMGCDNLRYVLATGD  307 (329)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEE--CTTCCEEC------TTTTTTCTTEEEEEECSS
T ss_pred             cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEE--cccceEEc------hhhhhCCccCCEEEeCCC
Confidence            4446778999999999843 2222 34567899999 9775  32222111      255678999999999654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=95.62  E-value=0.00047  Score=69.43  Aligned_cols=58  Identities=19%  Similarity=0.116  Sum_probs=33.3

Q ss_pred             CCCCcEEEeeceeecCCC---C-CCCCCCceeeeeeEeecchhHHHH---h-ccCCcCCeEEEecc
Q 012979          156 CKSLVELEVKNAWLSVDN---L-NQMPMLTKLTLEFIRLEDEDLDKV---N-DCFPCLQVLNLVGV  213 (452)
Q Consensus       156 c~~L~~L~L~~~~~d~~~---l-~~fp~Lr~L~L~~v~i~~~~L~~l---l-~~cP~Le~L~L~~~  213 (452)
                      +++|++|+|.++.+...+   + ..+++|++|+|.+-.+++.....+   + ..++.|++|+|.+|
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n  165 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNN  165 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSS
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCC
Confidence            457777777764332211   1 245677777777766665444332   2 24667777777554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=95.38  E-value=0.01  Score=53.27  Aligned_cols=54  Identities=22%  Similarity=0.246  Sum_probs=28.1

Q ss_pred             CCcEEEeeceee-cCC---CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          158 SLVELEVKNAWL-SVD---NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       158 ~L~~L~L~~~~~-d~~---~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      +|++|+|.+..+ ..+   .+..+++|++|+|.+-.++.-. ...+..++.|++|+|.+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCS
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCC
Confidence            667777765322 111   1456666777776665554211 11234466666666644

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=95.28  E-value=0.017  Score=52.12  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=13.8

Q ss_pred             CCCceeeeeeEeecchhHHHHhccCCcCCeEEEe
Q 012979          178 PMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLV  211 (452)
Q Consensus       178 p~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~  211 (452)
                      ++|++|+|.+-.+..  +...+..+++|++|+|.
T Consensus        31 ~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls   62 (193)
T 2wfh_A           31 RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLS   62 (193)
T ss_dssp             TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECC
T ss_pred             CCCCEEECCCCcCch--hHHHhhcccCCCEEECC
Confidence            445555554443331  11223445555555554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=95.03  E-value=0.022  Score=60.46  Aligned_cols=115  Identities=17%  Similarity=0.115  Sum_probs=66.5

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      ..|+.|++++..-       ..+|. ...+++|+.|+|++..+ .. ..++.+++|++|+|.+-.++.  +. -+..+|+
T Consensus       441 ~~L~~L~Ls~n~l-------~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~  509 (567)
T 1dce_A          441 ADVRVLHLAHKDL-------TVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPR  509 (567)
T ss_dssp             TTCSEEECTTSCC-------SSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSS
T ss_pred             cCceEEEecCCCC-------CCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCC
Confidence            4577787763311       12344 44677888888886333 22 346778888888888766664  33 3567888


Q ss_pred             CCeEEEeccccccc--Cc--cccccccEEEeee---cCCcc---eEEecCCceeEEEe
Q 012979          205 LQVLNLVGVGGFRQ--PK--IHLLHLKSCLWTV---SNAPL---SLAIYAPNLVKLEL  252 (452)
Q Consensus       205 Le~L~L~~~~g~~~--~~--l~~~sLr~l~l~~---s~~~~---~l~~~aP~Le~L~l  252 (452)
                      |++|+|.++.-...  |.  -.+++|+.+.+.-   ++...   .+.-..|+|+.|++
T Consensus       510 L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            88888866531111  22  2367777774431   11111   12224788888853

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=94.95  E-value=0.037  Score=49.73  Aligned_cols=79  Identities=22%  Similarity=0.273  Sum_probs=52.5

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      +.+++|.+.+..-       ..+|.....+++|+.|+|.+..+ .  +..+..+++|++|+|.+-.+..-.- ..+..+|
T Consensus        31 ~~l~~L~L~~n~i-------~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~  102 (193)
T 2wfh_A           31 RDVTELYLDGNQF-------TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP-RTFDGLK  102 (193)
T ss_dssp             TTCCEEECCSSCC-------CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT-TTTTTCT
T ss_pred             CCCCEEECCCCcC-------chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH-HHhCCCC
Confidence            5788998864321       12333345688999999997433 2  3347788999999998876653221 1235689


Q ss_pred             cCCeEEEecc
Q 012979          204 CLQVLNLVGV  213 (452)
Q Consensus       204 ~Le~L~L~~~  213 (452)
                      +|++|+|.++
T Consensus       103 ~L~~L~L~~N  112 (193)
T 2wfh_A          103 SLRLLSLHGN  112 (193)
T ss_dssp             TCCEEECCSS
T ss_pred             CCCEEECCCC
Confidence            9999999764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.87  E-value=0.023  Score=49.88  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=14.9

Q ss_pred             CCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEee
Q 012979          157 KSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRL  190 (452)
Q Consensus       157 ~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i  190 (452)
                      ++|++|+|.+..+ ..  ..+..+++|++|+|.+-.+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l   64 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI   64 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc
Confidence            3455555554211 11  1234455555555544333

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=94.72  E-value=0.0084  Score=53.96  Aligned_cols=56  Identities=20%  Similarity=0.271  Sum_probs=25.0

Q ss_pred             CCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEec
Q 012979          156 CKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       156 c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~  212 (452)
                      +++|++|+|.+..+ +.+++..+++|++|+|.+-.+.+ ..+. .+..+|+|++|.+.+
T Consensus        92 ~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~-~l~~l~~L~~L~l~~  149 (198)
T 1ds9_A           92 ADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEID-KLAALDKLEDLLLAG  149 (198)
T ss_dssp             HHHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHH-HHTTTTTCSEEEECS
T ss_pred             CCcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHH-HHhcCCCCCEEEecC
Confidence            34555555554322 12233444555555555554443 1121 234455555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=94.60  E-value=0.042  Score=48.19  Aligned_cols=81  Identities=19%  Similarity=0.122  Sum_probs=53.6

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      .+.+++|++.+....      ...+.....+++|++|+|.+..+ ..  ..+..+++|++|+|.+-.+..-. ...+..+
T Consensus        27 ~~~l~~L~l~~n~l~------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l   99 (177)
T 2o6r_A           27 PSSATRLELESNKLQ------SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP-NGVFDKL   99 (177)
T ss_dssp             CTTCSEEECCSSCCC------CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTC
T ss_pred             CCCCcEEEeCCCccc------EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccC-HHHhhCC
Confidence            367899999743211      11122234678999999997433 22  23678999999999887665321 1234669


Q ss_pred             CcCCeEEEecc
Q 012979          203 PCLQVLNLVGV  213 (452)
Q Consensus       203 P~Le~L~L~~~  213 (452)
                      +.|++|+|.++
T Consensus       100 ~~L~~L~l~~N  110 (177)
T 2o6r_A          100 TQLKELALDTN  110 (177)
T ss_dssp             TTCCEEECCSS
T ss_pred             cccCEEECcCC
Confidence            99999999764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.12  E-value=0.19  Score=50.76  Aligned_cols=11  Identities=9%  Similarity=0.099  Sum_probs=7.3

Q ss_pred             cCCcCCeEEEe
Q 012979          201 CFPCLQVLNLV  211 (452)
Q Consensus       201 ~cP~Le~L~L~  211 (452)
                      .|++|+++.|.
T Consensus       224 ~~~~L~~l~l~  234 (401)
T 4fdw_A          224 KTSQLKTIEIP  234 (401)
T ss_dssp             TCTTCCCEECC
T ss_pred             CCCCCCEEecC
Confidence            37777777763

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=94.08  E-value=0.017  Score=63.21  Aligned_cols=96  Identities=21%  Similarity=0.170  Sum_probs=43.0

Q ss_pred             cCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc--cccccccEEE
Q 012979          155 CCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK--IHLLHLKSCL  230 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~--l~~~sLr~l~  230 (452)
                      .++.|+.|+|.+..+ .. +.+..+++|++|+|.+-.+.  .+..-+..+++|++|+|.++.-...|.  -.+++|+++.
T Consensus       222 ~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          222 DDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             cCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            445566666654222 22 23445566666666554444  121223445666666664432111111  1244555553


Q ss_pred             eee---cCCcceEEecCCceeEEEee
Q 012979          231 WTV---SNAPLSLAIYAPNLVKLELR  253 (452)
Q Consensus       231 l~~---s~~~~~l~~~aP~Le~L~l~  253 (452)
                      +.-   +..+..+. ..++|+.|++.
T Consensus       300 L~~N~l~~lp~~~~-~l~~L~~L~L~  324 (727)
T 4b8c_D          300 FFDNMVTTLPWEFG-NLCNLQFLGVE  324 (727)
T ss_dssp             CCSSCCCCCCSSTT-SCTTCCCEECT
T ss_pred             CCCCCCCccChhhh-cCCCccEEeCC
Confidence            321   11222222 55677777764

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=93.81  E-value=0.043  Score=48.48  Aligned_cols=79  Identities=15%  Similarity=0.135  Sum_probs=41.1

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCC--CCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVD--NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~--~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..+++|+|++..-      ....|.....+++|+.|+|.+..+ ..+  .+..+++|++|+|.+-.+..-. ...+..++
T Consensus        33 ~~L~~L~Ls~N~l------~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~-~~~~~~l~  105 (174)
T 2r9u_A           33 TDKQRLWLNNNQI------TKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP-RGAFDNLK  105 (174)
T ss_dssp             TTCSEEECCSSCC------CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred             CCCcEEEeCCCCc------cccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC-HHHhcccc
Confidence            5667777753211      111122233566777777775322 222  2456777777777665554211 12234477


Q ss_pred             cCCeEEEec
Q 012979          204 CLQVLNLVG  212 (452)
Q Consensus       204 ~Le~L~L~~  212 (452)
                      +|++|.|.+
T Consensus       106 ~L~~L~L~~  114 (174)
T 2r9u_A          106 SLTHIYLYN  114 (174)
T ss_dssp             TCSEEECCS
T ss_pred             CCCEEEeCC
Confidence            777777754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=93.77  E-value=0.18  Score=50.88  Aligned_cols=63  Identities=11%  Similarity=0.075  Sum_probs=36.7

Q ss_pred             cccccccCcccEEEEeecccc------ccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979          279 EIRFQEFRNLMNLQLESSSLS------SLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP  349 (452)
Q Consensus       279 ~~~l~~~~~L~~L~l~~~~~~------~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~  349 (452)
                      .-.+.+|.+|+++.+......      -....+..|++|+.+.+  +.......      ...+..|++|++++|..
T Consensus       264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l--~~~i~~I~------~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEI--PESIRILG------QGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECC--CTTCCEEC------TTTTTTCCSCCEEEECT
T ss_pred             hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEe--CCceEEEh------hhhhcCCCCccEEEECc
Confidence            345667888888888643221      11344667888888664  32221111      14456778888888843

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=93.71  E-value=0.052  Score=48.54  Aligned_cols=57  Identities=23%  Similarity=0.223  Sum_probs=25.8

Q ss_pred             cCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          155 CCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      .+++|++|+|.+..+   .+..+..+++|++|+|.+-.+..-.- ..+..+|.|++|+|.+
T Consensus        52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~  111 (192)
T 1w8a_A           52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN-KMFLGLHQLKTLNLYD  111 (192)
T ss_dssp             GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS-SSSTTCTTCCEEECCS
T ss_pred             cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH-HHhcCCCCCCEEECCC
Confidence            345555555554221   12234555555555555544432111 1123355555555543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=93.47  E-value=0.061  Score=47.18  Aligned_cols=79  Identities=18%  Similarity=0.193  Sum_probs=41.3

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cC--CCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SV--DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~--~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      +.+++|+|++..-      ....+....++++|++|+|.+..+ ..  ..+..+++|++|+|.+-.+..-. ...+..++
T Consensus        30 ~~l~~L~L~~N~i------~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~  102 (170)
T 3g39_A           30 TTTQVLYLYDNQI------TKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLK  102 (170)
T ss_dssp             TTCSEEECCSSCC------CCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCT
T ss_pred             CCCcEEEcCCCcC------CccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCC
Confidence            5667777753211      111122233566777777775322 21  22456777777777665554211 11234467


Q ss_pred             cCCeEEEec
Q 012979          204 CLQVLNLVG  212 (452)
Q Consensus       204 ~Le~L~L~~  212 (452)
                      +|++|.|.+
T Consensus       103 ~L~~L~L~~  111 (170)
T 3g39_A          103 SLTHIWLLN  111 (170)
T ss_dssp             TCCEEECCS
T ss_pred             CCCEEEeCC
Confidence            777777754

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=92.83  E-value=0.026  Score=61.61  Aligned_cols=58  Identities=17%  Similarity=0.124  Sum_probs=28.5

Q ss_pred             ccCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          154 SCCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      +.+++|+.|+|.+..+ .. +.+..+++|++|+|.+-.+.  .+..-+..+++|++|+|.++
T Consensus       244 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N  303 (727)
T 4b8c_D          244 FKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDN  303 (727)
T ss_dssp             GGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSS
T ss_pred             cCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCC
Confidence            3455666666664322 11 23455566666666555444  12112344566666666443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=92.64  E-value=0.019  Score=57.45  Aligned_cols=137  Identities=18%  Similarity=0.091  Sum_probs=77.0

Q ss_pred             HHHHHHhcC-CCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeecccccccccccccce
Q 012979           73 ILENLVRNS-RHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRKSEVLAF  151 (452)
Q Consensus        73 ~v~~~l~~~-~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~~~~L~~  151 (452)
                      .+..++... +.++.|+|+.+      .+             ....+ .-+..+.+.+++|+|++..-..  .....+.-
T Consensus        91 ~l~~~L~~~~~~L~~L~Ls~n------~l-------------~~~~~-~~l~~~L~~L~~L~Ls~n~l~~--~~~~~L~~  148 (372)
T 3un9_A           91 VVAAVLGSGRHALDEVNLASC------QL-------------DPAGL-RTLLPVFLRARKLGLQLNSLGP--EACKDLRD  148 (372)
T ss_dssp             HHHHHHSSCSSCEEEEECTTC------CC-------------CHHHH-HHTHHHHHTEEEEECCSSCCCH--HHHHHHHH
T ss_pred             HHHHHHhhCCCCceEEEecCC------CC-------------CHHHH-HHHHHHHHhccHhhcCCCCCCH--HHHHHHHH
Confidence            455566654 69999988832      11             11112 1123334578889887432110  00011111


Q ss_pred             ec-ccCCCCcEEEeeceeecCC-------CCCCCCCCceeeeeeEeecchh---HHHHhccCCcCCeEEEecccccccC-
Q 012979          152 IS-SCCKSLVELEVKNAWLSVD-------NLNQMPMLTKLTLEFIRLEDED---LDKVNDCFPCLQVLNLVGVGGFRQP-  219 (452)
Q Consensus       152 ~~-~~c~~L~~L~L~~~~~d~~-------~l~~fp~Lr~L~L~~v~i~~~~---L~~ll~~cP~Le~L~L~~~~g~~~~-  219 (452)
                      .. ..+.+|++|+|+++.+...       .+...++|++|+|.+-.+.+..   |...+..++.|++|+|.+|. .... 
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g  227 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTA  227 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHH
Confidence            11 2466899999987544211       1356788999999888787654   44556778889999997653 2111 


Q ss_pred             --cc-----ccccccEEEee
Q 012979          220 --KI-----HLLHLKSCLWT  232 (452)
Q Consensus       220 --~l-----~~~sLr~l~l~  232 (452)
                        .+     ..++|+.+.+.
T Consensus       228 ~~~l~~~L~~~~~L~~L~Ls  247 (372)
T 3un9_A          228 ALALARAAREHPSLELLHLY  247 (372)
T ss_dssp             HHHHHHHHHHCSSCCEEECT
T ss_pred             HHHHHHHHHhCCCCCEEecc
Confidence              11     24678887443

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=92.32  E-value=0.34  Score=48.23  Aligned_cols=54  Identities=15%  Similarity=0.123  Sum_probs=30.2

Q ss_pred             ccCCCCcEEEeec--eeecCCCCCCCCCCceeeeee--EeecchhHHHHhccCCcCCeEEEe
Q 012979          154 SCCKSLVELEVKN--AWLSVDNLNQMPMLTKLTLEF--IRLEDEDLDKVNDCFPCLQVLNLV  211 (452)
Q Consensus       154 ~~c~~L~~L~L~~--~~~d~~~l~~fp~Lr~L~L~~--v~i~~~~L~~ll~~cP~Le~L~L~  211 (452)
                      .+|++|+.+.|.+  ..++...+..+++|+++.|..  ..+.+.++    +.|+.|+.+.+.
T Consensus       159 ~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F----~~~~~L~~i~~~  216 (394)
T 4fs7_A          159 ATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRNLKIIRDYCF----AECILLENMEFP  216 (394)
T ss_dssp             TTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTTCCEECTTTT----TTCTTCCBCCCC
T ss_pred             cccCCCcEEecCCccceeccccccCCCCceEEEcCCCceEeCchhh----ccccccceeecC
Confidence            3577777777764  234344455667777776632  12233333    347777777663

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=90.36  E-value=0.21  Score=43.64  Aligned_cols=56  Identities=20%  Similarity=0.147  Sum_probs=41.1

Q ss_pred             CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ++|+.|+|.+..+   .+..+..+++|++|+|.+-.+..-. ...+..+|.|++|+|.++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~-~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP-AGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC-hhhccCCCCCCEEECCCC
Confidence            6899999997433   2344788999999999987776321 123466999999999764

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=90.04  E-value=0.1  Score=49.92  Aligned_cols=56  Identities=25%  Similarity=0.273  Sum_probs=25.5

Q ss_pred             ccCCCCcEEEeeceee-cCCCCCCCC--CCceeeeeeEeecc------hhHHHHhccCCcCCeEE
Q 012979          154 SCCKSLVELEVKNAWL-SVDNLNQMP--MLTKLTLEFIRLED------EDLDKVNDCFPCLQVLN  209 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d~~~l~~fp--~Lr~L~L~~v~i~~------~~L~~ll~~cP~Le~L~  209 (452)
                      ..+++|+.|+|++..+ +...+..+.  +|++|.|.+-.+.+      .....+++.+|.|+.|+
T Consensus       193 ~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          193 QKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            3456666666654222 222222222  55555555443332      12234555566666554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=89.86  E-value=0.052  Score=48.51  Aligned_cols=83  Identities=11%  Similarity=0.014  Sum_probs=54.9

Q ss_pred             cCCceEEEeeec-ccccccccccccceecccCCCCcEEEeeceeecCCC-------CCCCCCCceeeeeeEeecchh---
Q 012979          126 CEELKFLSISDC-WFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDN-------LNQMPMLTKLTLEFIRLEDED---  194 (452)
Q Consensus       126 ~~~L~eL~l~~~-~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~-------l~~fp~Lr~L~L~~v~i~~~~---  194 (452)
                      ...|++|+|.+. .-..  .....+.-....+++|++|+|++..+...+       +...++|++|+|.+-.|.++.   
T Consensus        35 ~~~L~~L~L~~n~~i~~--~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPV--PTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             CTTCCEEECTTCTTCCH--HHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCCEEEecCCCCCCH--HHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence            578999999743 2210  001122233345788999999975553222       235588999999998888754   


Q ss_pred             HHHHhccCCcCCeEEE
Q 012979          195 LDKVNDCFPCLQVLNL  210 (452)
Q Consensus       195 L~~ll~~cP~Le~L~L  210 (452)
                      |...+..++.|++|+|
T Consensus       113 l~~~L~~n~~L~~L~L  128 (185)
T 1io0_A          113 LVEALQSNTSLIELRI  128 (185)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCCCceEEEe
Confidence            5555777889999999

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=89.70  E-value=0.26  Score=43.32  Aligned_cols=56  Identities=18%  Similarity=0.125  Sum_probs=41.1

Q ss_pred             CCCcEEEeeceee-c--CCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          157 KSLVELEVKNAWL-S--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       157 ~~L~~L~L~~~~~-d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ++|++|+|.+..+ .  +..+..+++|++|+|.+-.+..-. ..++..+++|++|+|.++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC-hhHhCCcchhhEEECCCC
Confidence            6899999997433 2  335789999999999887775311 123466899999999764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=87.18  E-value=1.5  Score=43.37  Aligned_cols=35  Identities=26%  Similarity=0.394  Sum_probs=22.3

Q ss_pred             cccccCcccEEEEeecccccc-ccccccCCceeEEEE
Q 012979          281 RFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKV  316 (452)
Q Consensus       281 ~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L  316 (452)
                      .+.+|.+|+++.|... ...+ ..++..|++|+.+.+
T Consensus       338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            5667888888887632 2221 345677888888664

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=87.01  E-value=0.57  Score=45.39  Aligned_cols=36  Identities=25%  Similarity=0.349  Sum_probs=16.9

Q ss_pred             cCCCCcEEEeecee---ecCCCCCCCCCCceeeeeeEee
Q 012979          155 CCKSLVELEVKNAW---LSVDNLNQMPMLTKLTLEFIRL  190 (452)
Q Consensus       155 ~c~~L~~L~L~~~~---~d~~~l~~fp~Lr~L~L~~v~i  190 (452)
                      ++++|+.|+|.+..   +.+..+..+++|++|+|.+-.+
T Consensus        54 ~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           54 GLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             SCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             cccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            34555555555421   1122344555555555554444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=86.52  E-value=0.44  Score=46.25  Aligned_cols=81  Identities=22%  Similarity=0.140  Sum_probs=50.4

Q ss_pred             cceecccCCCCcEEEeec-eee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc--cc
Q 012979          149 LAFISSCCKSLVELEVKN-AWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK--IH  222 (452)
Q Consensus       149 L~~~~~~c~~L~~L~L~~-~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~--l~  222 (452)
                      +|. ...+.+|++|+|.+ ..+   .+..+..+++|++|+|.+-.+..-. ...+..+++|+.|+|.++.-...+.  ..
T Consensus        24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~~~  101 (347)
T 2ifg_A           24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNALESLSWKTVQ  101 (347)
T ss_dssp             TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred             cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC-HHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence            444 44567899999974 333   2335788999999999887665311 1234569999999997653222221  22


Q ss_pred             cccccEEEe
Q 012979          223 LLHLKSCLW  231 (452)
Q Consensus       223 ~~sLr~l~l  231 (452)
                      ..+|+.+.+
T Consensus       102 ~~~L~~l~l  110 (347)
T 2ifg_A          102 GLSLQELVL  110 (347)
T ss_dssp             SCCCCEEEC
T ss_pred             cCCceEEEe
Confidence            233777644

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=83.91  E-value=0.63  Score=42.31  Aligned_cols=129  Identities=13%  Similarity=0.093  Sum_probs=79.3

Q ss_pred             CCCcHHHHHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcchhhcCCceEEEeeeccccccccc
Q 012979           66 RVTPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLPWVCEELKFLSISDCWFQSCWRK  145 (452)
Q Consensus        66 ~~~~~~~~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~~~~~~L~eL~l~~~~~~~~~~~  145 (452)
                      ..+++.+++.+++...+.+++|.|.....++            |   .....++.=|. ...+|++|.|.+..-..  ..
T Consensus        25 N~t~v~~~l~~ll~~n~~L~~L~L~~nn~ig------------d---~ga~~la~aL~-~N~~L~~L~L~~n~igd--~g   86 (197)
T 1pgv_A           25 NDTDVESCINRLREDDTDLKEVNINNMKRVS------------K---ERIRSLIEAAC-NSKHIEKFSLANTAISD--SE   86 (197)
T ss_dssp             --CCHHHHHHHHHTTCSSCCEEECTTCCSSC------------H---HHHHHHHHHHT-TCSCCCEEECTTSCCBH--HH
T ss_pred             CCCCHHHHHHHHHhcCCCccEEECCCCCCCC------------H---HHHHHHHHHHh-hCCCcCEEEccCCCCCh--HH
Confidence            4577888899999989999999887211111            0   00111111111 35889999997432110  01


Q ss_pred             ccccceecccCCCCcEEEeeceeecCCC-------CCCCCCCceeeeeeE---eecc---hhHHHHhccCCcCCeEEEec
Q 012979          146 SEVLAFISSCCKSLVELEVKNAWLSVDN-------LNQMPMLTKLTLEFI---RLED---EDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       146 ~~~L~~~~~~c~~L~~L~L~~~~~d~~~-------l~~fp~Lr~L~L~~v---~i~~---~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ...+.-.+..-++|++|+|++..+...+       +..=..|++|.|.+-   .+.+   ..+...|...+.|+.|.+..
T Consensus        87 a~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~  166 (197)
T 1pgv_A           87 ARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  166 (197)
T ss_dssp             HTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccC
Confidence            1233333445678999999976664333       334467999999642   4454   36788889999999999953

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	452
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	0.001

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 3  EHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK 38
          + LP  L+L I S L    +L +   V K    L  
Sbjct: 2  DSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	452
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.87
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.22
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.15
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.12
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.1
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.06
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.05
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.98
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	97.88
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	97.8
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.68
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.67
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.61
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.58
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	97.54
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	97.51
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	97.37
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.14
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	97.14
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	97.04
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.99
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	96.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	96.89
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	96.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	96.76
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.59
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	95.76
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	95.65
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	94.67
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	94.62
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	94.32
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.86
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	93.66
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	92.05
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	91.91
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	91.37
d2ifga3	156	High affinity nerve growth factor receptor, N-term	90.09
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	88.96
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	88.84
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	87.58
d2ifga3	156	High affinity nerve growth factor receptor, N-term	86.97

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=1.1e-10  Score=111.56  Aligned_cols=86  Identities=23%  Similarity=0.237  Sum_probs=66.6

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeec---CCCCCCCCCCceeeeee-EeecchhHHHHhcc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLS---VDNLNQMPMLTKLTLEF-IRLEDEDLDKVNDC  201 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d---~~~l~~fp~Lr~L~L~~-v~i~~~~L~~ll~~  201 (452)
                      ...+|+|++++...     ....+..+...|++|++|+|+++.++   ...+..+|+|++|+|.+ ..+++.++..+...
T Consensus        45 ~~~L~~LdLs~~~i-----~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          45 PFRVQHMDLSNSVI-----EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             CBCCCEEECTTCEE-----CHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             CCCCCEEECCCCcc-----CHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHH
Confidence            45799999975421     22345666778999999999986543   23367899999999977 57889999999999


Q ss_pred             CCcCCeEEEeccccc
Q 012979          202 FPCLQVLNLVGVGGF  216 (452)
Q Consensus       202 cP~Le~L~L~~~~g~  216 (452)
                      ||+||+|+|.+|...
T Consensus       120 ~~~L~~L~ls~c~~~  134 (284)
T d2astb2         120 CSRLDELNLSWCFDF  134 (284)
T ss_dssp             CTTCCEEECCCCTTC
T ss_pred             HHhcccccccccccc
Confidence            999999999887543

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.2e-09  Score=73.26  Aligned_cols=35  Identities=31%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhh
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLC   37 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~   37 (452)
                      |+.||+||+.+|+++|+ .+|+++++.|||+|+.+.
T Consensus         1 f~~LP~eil~~If~~L~-~~dl~~~~~Vcr~w~~l~   35 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLC-LPELLKVSGVCKRWYRLA   35 (41)
T ss_dssp             CCSSCHHHHHHHHTTSC-GGGHHHHHTTCHHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHh
Confidence            68999999999999995 999999999999999985

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6.5e-08  Score=91.64  Aligned_cols=60  Identities=30%  Similarity=0.374  Sum_probs=45.1

Q ss_pred             CCCCcEEEeeceeecCCC----CCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccccc
Q 012979          156 CKSLVELEVKNAWLSVDN----LNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGF  216 (452)
Q Consensus       156 c~~L~~L~L~~~~~d~~~----l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~  216 (452)
                      ...|++|+|.++.++...    +..+++|++|+|.+..+++..+.. ++.+|+|++|+|.+|.++
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c~~i  108 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGCSGF  108 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTCBSC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCccccccccc
Confidence            347888999886664322    467889999999888888877776 477899999999776544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.15  E-value=2.9e-06  Score=76.80  Aligned_cols=78  Identities=17%  Similarity=0.218  Sum_probs=51.4

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      .++|++|.+.+..-       ..++. ...+++|++|+|.+..+ +..++..+++|++|.+.+..+++  +.. ++.++.
T Consensus        40 l~~L~~L~l~~~~i-------~~l~~-l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~--i~~-l~~l~~  108 (227)
T d1h6ua2          40 LDGITTLSAFGTGV-------TTIEG-VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKN--VSA-IAGLQS  108 (227)
T ss_dssp             HHTCCEEECTTSCC-------CCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSC--CGG-GTTCTT
T ss_pred             cCCcCEEECCCCCC-------Ccchh-HhcCCCCcEeecCCceeeccccccccccccccccccccccc--ccc-cccccc
Confidence            35788888864421       11222 24688899999887433 34457888888888888765543  333 467888


Q ss_pred             CCeEEEeccc
Q 012979          205 LQVLNLVGVG  214 (452)
Q Consensus       205 Le~L~L~~~~  214 (452)
                      |+.|.+.++.
T Consensus       109 L~~l~l~~~~  118 (227)
T d1h6ua2         109 IKTLDLTSTQ  118 (227)
T ss_dssp             CCEEECTTSC
T ss_pred             cccccccccc
Confidence            8888886553

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.4e-07  Score=71.88  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=34.0

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhcc
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCKE   39 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~~   39 (452)
                      ++.||+||+.+|+++| |++|+++++.|||+|+.+..+
T Consensus        19 i~~LP~Eil~~Ils~L-d~~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          19 ISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             TTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHHTC
T ss_pred             hhhCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHCC
Confidence            5789999999999999 599999999999999998744

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.10  E-value=5.2e-06  Score=73.74  Aligned_cols=160  Identities=16%  Similarity=0.191  Sum_probs=85.4

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCc
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPC  204 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~  204 (452)
                      ...+++|.+.+.+-.       .++. ...+++|++|+|.+..+ +.+++..+++|++|.+.+..+..  +.. ++.++.
T Consensus        39 l~~l~~L~l~~~~i~-------~l~~-l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~--~~~-l~~l~~  107 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-------SIDG-VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIAD--ITP-LANLTN  107 (199)
T ss_dssp             HTTCCEEECTTSCCC-------CCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-GTTCTT
T ss_pred             hcCCCEEECCCCCCC-------Cccc-cccCCCcCcCccccccccCcccccCCccccccccccccccc--ccc-cccccc
Confidence            356777777543211       1222 23577888888886433 44557778888888887655543  112 456788


Q ss_pred             CCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccc
Q 012979          205 LQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQE  284 (452)
Q Consensus       205 Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~  284 (452)
                      |+.|.+.++......                   .+. ..|+|+.|.+......                 ..+  .+.+
T Consensus       108 L~~L~l~~~~~~~~~-------------------~~~-~l~~L~~L~l~~n~l~-----------------~~~--~l~~  148 (199)
T d2omxa2         108 LTGLTLFNNQITDID-------------------PLK-NLTNLNRLELSSNTIS-----------------DIS--ALSG  148 (199)
T ss_dssp             CSEEECCSSCCCCCG-------------------GGT-TCTTCSEEECCSSCCC-----------------CCG--GGTT
T ss_pred             ccccccccccccccc-------------------ccc-hhhhhHHhhhhhhhhc-----------------ccc--cccc
Confidence            888888654321110                   011 4567777776432110                 000  2445


Q ss_pred             cCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEE
Q 012979          285 FRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSL  345 (452)
Q Consensus       285 ~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L  345 (452)
                      +.+|++|++....+.. +..+..++++++|++.-. ...+       + +.+..+++|++|
T Consensus       149 ~~~L~~L~l~~n~l~~-l~~l~~l~~L~~L~ls~N-~i~~-------i-~~l~~L~~L~~L  199 (199)
T d2omxa2         149 LTSLQQLNFSSNQVTD-LKPLANLTTLERLDISSN-KVSD-------I-SVLAKLTNLESL  199 (199)
T ss_dssp             CTTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSS-CCCC-------C-GGGGGCTTCSEE
T ss_pred             cccccccccccccccC-CccccCCCCCCEEECCCC-CCCC-------C-ccccCCCCCCcC
Confidence            6677777776544332 223455677777765221 1111       1 235677777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.06  E-value=5.3e-06  Score=74.40  Aligned_cols=163  Identities=19%  Similarity=0.152  Sum_probs=95.2

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL  205 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L  205 (452)
                      .++++|.+.+...    .   .++. ...+++|++|+|.+..+ +.+++..+++|++|+|.+..+++  +.. +..+|.|
T Consensus        46 ~~L~~L~l~~~~i----~---~l~~-l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~--l~~-l~~l~~L  114 (210)
T d1h6ta2          46 NSIDQIIANNSDI----K---SVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKD--LSS-LKDLKKL  114 (210)
T ss_dssp             HTCCEEECTTSCC----C---CCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--GGG-GTTCTTC
T ss_pred             cCccEEECcCCCC----C---Cchh-HhhCCCCCEEeCCCccccCccccccCccccccccccccccc--ccc-ccccccc
Confidence            4678887764321    1   1121 24578899999887433 44556788889998888777664  332 4668888


Q ss_pred             CeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccccc
Q 012979          206 QVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEF  285 (452)
Q Consensus       206 e~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~  285 (452)
                      +.|.+.++... ...                  .+. ..|+|+.+.+......                 ..  ..+..+
T Consensus       115 ~~L~l~~~~~~-~~~------------------~l~-~l~~l~~l~~~~n~l~-----------------~~--~~~~~l  155 (210)
T d1h6ta2         115 KSLSLEHNGIS-DIN------------------GLV-HLPQLESLYLGNNKIT-----------------DI--TVLSRL  155 (210)
T ss_dssp             CEEECTTSCCC-CCG------------------GGG-GCTTCCEEECCSSCCC-----------------CC--GGGGGC
T ss_pred             ccccccccccc-ccc------------------ccc-cccccccccccccccc-----------------cc--cccccc
Confidence            88888654311 110                  111 4567777776322110                 00  123456


Q ss_pred             CcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979          286 RNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP  349 (452)
Q Consensus       286 ~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~  349 (452)
                      ++|+.+++....+.. +.-+..++++++|.+.-.    ...    +++ -+..+|+|+.|+|.+
T Consensus       156 ~~L~~l~l~~n~l~~-i~~l~~l~~L~~L~Ls~N----~i~----~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         156 TKLDTLSLEDNQISD-IVPLAGLTKLQNLYLSKN----HIS----DLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             TTCSEEECCSSCCCC-CGGGTTCTTCCEEECCSS----CCC----BCG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccccc-cccccCCCCCCEEECCCC----CCC----CCh-hhcCCCCCCEEEccC
Confidence            677888887655443 223556788888775321    111    122 367788999998853

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=4.4e-07  Score=72.42  Aligned_cols=36  Identities=25%  Similarity=0.332  Sum_probs=32.8

Q ss_pred             CCCCcHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979            2 EEHLPQPLILEILSRLTDSADLARCRVVSKTLNSLCK   38 (452)
Q Consensus         2 ~s~LPd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~   38 (452)
                      ++.||+||+.+|+|+| |++|++++++|||+|+.+..
T Consensus         6 ~~~LP~Ell~~I~s~L-d~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           6 ITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             HHHSCHHHHHHHHTTS-CHHHHHHHTTTCHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
Confidence            4679999999999999 59999999999999998753

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.98  E-value=8.4e-06  Score=72.35  Aligned_cols=139  Identities=19%  Similarity=0.209  Sum_probs=87.6

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..+.|+.|++++..-    .   .++- ..++++|+.|++.+..+ ..+++..+++|++|.+.+..+....  . +..+|
T Consensus        60 ~l~nL~~L~Ls~N~l----~---~~~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~-~~~l~  128 (199)
T d2omxa2          60 YLNNLTQINFSNNQL----T---DITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLT  128 (199)
T ss_dssp             GCTTCCEEECCSSCC----C---CCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCG--G-GTTCT
T ss_pred             cCCCcCcCccccccc----c---Cccc-ccCCccccccccccccccccccccccccccccccccccccccc--c-cchhh
Confidence            468899999975311    1   1222 34689999999997433 4556889999999999887665421  2 46699


Q ss_pred             cCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccc
Q 012979          204 CLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQ  283 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~  283 (452)
                      .|+.|.+.++. .....                  .+. ..++|+.|.+.....          ..       .+  .+.
T Consensus       129 ~L~~L~l~~n~-l~~~~------------------~l~-~~~~L~~L~l~~n~l----------~~-------l~--~l~  169 (199)
T d2omxa2         129 NLNRLELSSNT-ISDIS------------------ALS-GLTSLQQLNFSSNQV----------TD-------LK--PLA  169 (199)
T ss_dssp             TCSEEECCSSC-CCCCG------------------GGT-TCTTCSEEECCSSCC----------CC-------CG--GGT
T ss_pred             hhHHhhhhhhh-hcccc------------------ccc-ccccccccccccccc----------cC-------Cc--ccc
Confidence            99999997642 11110                  111 567788888743211          11       01  356


Q ss_pred             ccCcccEEEEeeccccccccccccCCceeEE
Q 012979          284 EFRNLMNLQLESSSLSSLINTFPFGKTIKKL  314 (452)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL  314 (452)
                      ++++|++|++++..+.. +..+..+++++.|
T Consensus       170 ~l~~L~~L~ls~N~i~~-i~~l~~L~~L~~L  199 (199)
T d2omxa2         170 NLTTLERLDISSNKVSD-ISVLAKLTNLESL  199 (199)
T ss_dssp             TCTTCCEEECCSSCCCC-CGGGGGCTTCSEE
T ss_pred             CCCCCCEEECCCCCCCC-CccccCCCCCCcC
Confidence            77888888888655433 3344567777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.88  E-value=1.2e-05  Score=71.94  Aligned_cols=141  Identities=18%  Similarity=0.178  Sum_probs=86.1

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      ..+.|++|++++..-       ..++.. ..+++|+.|+|.+..+ +.+++..+++|+.|++....+..  +.. +..+|
T Consensus        66 ~l~~L~~L~L~~n~i-------~~l~~~-~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~--~~~-l~~l~  134 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKL-------TDIKPL-ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD--ING-LVHLP  134 (210)
T ss_dssp             GCTTCCEEECCSSCC-------CCCGGG-TTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCC--CGG-GGGCT
T ss_pred             hCCCCCEEeCCCccc-------cCcccc-ccCccccccccccccccccccccccccccccccccccccc--ccc-ccccc
Confidence            367899999974321       123322 3688999999997444 45678889999999998876643  333 56799


Q ss_pred             cCCeEEEecccccccCccccccccEEEeeecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeeccccccccc
Q 012979          204 CLQVLNLVGVGGFRQPKIHLLHLKSCLWTVSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQ  283 (452)
Q Consensus       204 ~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~  283 (452)
                      .|+.+.+.++. .....                   ..-..++|+++.+.....          ..       .  ..+.
T Consensus       135 ~l~~l~~~~n~-l~~~~-------------------~~~~l~~L~~l~l~~n~l----------~~-------i--~~l~  175 (210)
T d1h6ta2         135 QLESLYLGNNK-ITDIT-------------------VLSRLTKLDTLSLEDNQI----------SD-------I--VPLA  175 (210)
T ss_dssp             TCCEEECCSSC-CCCCG-------------------GGGGCTTCSEEECCSSCC----------CC-------C--GGGT
T ss_pred             ccccccccccc-ccccc-------------------cccccccccccccccccc----------cc-------c--cccc
Confidence            99999996532 22211                   011346677776632211          00       0  1245


Q ss_pred             ccCcccEEEEeeccccccccccccCCceeEEEE
Q 012979          284 EFRNLMNLQLESSSLSSLINTFPFGKTIKKLKV  316 (452)
Q Consensus       284 ~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L  316 (452)
                      ++++|++|+++...+..+ ..+..+++|+.|+|
T Consensus       176 ~l~~L~~L~Ls~N~i~~l-~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         176 GLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL  207 (210)
T ss_dssp             TCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEE
T ss_pred             CCCCCCEEECCCCCCCCC-hhhcCCCCCCEEEc
Confidence            667777777775544332 33456677777765

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.80  E-value=3e-05  Score=69.77  Aligned_cols=181  Identities=14%  Similarity=0.076  Sum_probs=99.9

Q ss_pred             cCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc-cccccccEEEee
Q 012979          155 CCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK-IHLLHLKSCLWT  232 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~-l~~~sLr~l~l~  232 (452)
                      .+++|+.|++.++-+ +.+++..|++|++|+|.+..+.+-  .. +..+++|+.|.+.++....... -.+++|+.+.+.
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~--~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc--cc-ccccccccccccccccccccccccccccccccccc
Confidence            356777888876433 345667778888888877666531  11 4567888888776543221111 235666666443


Q ss_pred             ecCCcc-eEEecCCceeEEEeeeecCC--ceeeeCCccceEEEeeccc-ccccccccCcccEEEEeeccccccccccccC
Q 012979          233 VSNAPL-SLAIYAPNLVKLELRCVKPK--SLVLQTPLLHDFCLSLEVA-NEIRFQEFRNLMNLQLESSSLSSLINTFPFG  308 (452)
Q Consensus       233 ~s~~~~-~l~~~aP~Le~L~l~~~~~~--~l~i~~p~L~~~~l~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~  308 (452)
                      ...... .-....+.++.+.+......  ......+.|+.+.+.-... ....+.++++|++|+++...+.. +..+..+
T Consensus       116 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~-l~~l~~l  194 (227)
T d1h6ua2         116 STQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD-ISPLASL  194 (227)
T ss_dssp             TSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGC
T ss_pred             cccccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCC-ChhhcCC
Confidence            211111 01124566666665432211  1112344455544321111 11245678899999998655544 3335678


Q ss_pred             CceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEc
Q 012979          309 KTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLG  348 (452)
Q Consensus       309 p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~  348 (452)
                      ++|+.|.+.-.    ....    + .-+..+|+|+.|+|.
T Consensus       195 ~~L~~L~Ls~N----~lt~----i-~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         195 PNLIEVHLKNN----QISD----V-SPLANTSNLFIVTLT  225 (227)
T ss_dssp             TTCCEEECTTS----CCCB----C-GGGTTCTTCCEEEEE
T ss_pred             CCCCEEECcCC----cCCC----C-cccccCCCCCEEEee
Confidence            99999886221    1111    1 237899999999984

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.3e-05  Score=65.49  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=29.5

Q ss_pred             cHHHHHHHHhcCCChhHHHHHHHHhHHHHHhhc
Q 012979            6 PQPLILEILSRLTDSADLARCRVVSKTLNSLCK   38 (452)
Q Consensus         6 Pd~lL~~ILS~L~~~kD~arts~lSkrWr~l~~   38 (452)
                      +|||+.+|||+| |++|++++++|||+|+.+..
T Consensus        19 ~~EI~~~Ils~L-d~~dL~~~s~Vck~W~~l~~   50 (118)
T d1p22a1          19 LDHIAENILSYL-DAKSLCAAELVCKEWYRVTS   50 (118)
T ss_dssp             CHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred             hHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHc
Confidence            379999999999 59999999999999999864

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.67  E-value=4.4e-05  Score=73.17  Aligned_cols=75  Identities=19%  Similarity=0.111  Sum_probs=42.2

Q ss_pred             ccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc-cccccccEEEe
Q 012979          154 SCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK-IHLLHLKSCLW  231 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~-l~~~sLr~l~l  231 (452)
                      ..++.+..|++.+..+ +.+....+++|++|++.+..+.+-  .. +..+++|++|.+.++.-...+. -..++|+.+.+
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l  270 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GT-LASLTNLTDLDLANNQISNLAPLSGLTKLTELKL  270 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--GG-GGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred             ccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--ch-hhcccccchhccccCccCCCCcccccccCCEeec
Confidence            3566777777776332 233455667777777776655542  11 3557778887776543211112 22456666644

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.61  E-value=0.00018  Score=67.60  Aligned_cols=210  Identities=13%  Similarity=0.063  Sum_probs=109.6

Q ss_pred             CceEEEeeecccccccccccccceecccCCCCcEEEeec--eeec--CCCCCCCCCCceeeeeeEeecchhHHHHhccCC
Q 012979          128 ELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKN--AWLS--VDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFP  203 (452)
Q Consensus       128 ~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~--~~~d--~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP  203 (452)
                      .|++|+|.+...    .....+|.....+++|++|+|.+  .+..  |+.+.++++|++|+|.+..+....- .....++
T Consensus        51 ~v~~L~L~~~~l----~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~-~~~~~~~  125 (313)
T d1ogqa_          51 RVNNLDLSGLNL----PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP-DFLSQIK  125 (313)
T ss_dssp             CEEEEEEECCCC----SSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC-GGGGGCT
T ss_pred             EEEEEECCCCCC----CCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc-ccccchh
Confidence            488999975421    12224555666889999999975  2332  3468899999999999887764322 2245689


Q ss_pred             cCCeEEEeccccc-ccC-cc-ccccccEEEeeecC----CcceEEecCCc-eeEEEeeeecCCceeee-CCccceEEEee
Q 012979          204 CLQVLNLVGVGGF-RQP-KI-HLLHLKSCLWTVSN----APLSLAIYAPN-LVKLELRCVKPKSLVLQ-TPLLHDFCLSL  274 (452)
Q Consensus       204 ~Le~L~L~~~~g~-~~~-~l-~~~sLr~l~l~~s~----~~~~l~~~aP~-Le~L~l~~~~~~~l~i~-~p~L~~~~l~i  274 (452)
                      .|+.|.+..+.-. ..+ .+ .++.|+.+.+.-..    .+..+. ..++ ++.+.+........... ...+....+.+
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l  204 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL  204 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCCSEEEC
T ss_pred             hhcccccccccccccCchhhccCcccceeeccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            9999998654211 111 12 35566666432111    111111 2233 34454422110000000 00111111111


Q ss_pred             ccc-----ccccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEcc
Q 012979          275 EVA-----NEIRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGP  349 (452)
Q Consensus       275 ~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~  349 (452)
                      .+.     ....+..+.+++.+++....+.....-+...++++.|.+.-...    .   -.+|.-+.++|+|++|++..
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l----~---g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI----Y---GTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCC----E---ECCCGGGGGCTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCccCee----c---ccCChHHhCCCCCCEEECcC
Confidence            111     11233456678888876544332233345577888877532211    0   11355677889999999965


Q ss_pred             C
Q 012979          350 R  350 (452)
Q Consensus       350 ~  350 (452)
                      .
T Consensus       278 N  278 (313)
T d1ogqa_         278 N  278 (313)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=3.2e-05  Score=71.54  Aligned_cols=156  Identities=19%  Similarity=0.123  Sum_probs=83.7

Q ss_pred             ccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEee
Q 012979          154 SCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWT  232 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~  232 (452)
                      .++++|++|+|.+..+ ..+....+++|++|+|.+-.+...  ......+|.|+.|.+.++.....+             
T Consensus        52 ~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~l~~~~~~~~~-------------  116 (266)
T d1p9ag_          52 MPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLDVSFNRLTSLP-------------  116 (266)
T ss_dssp             TTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEECCSSCCCCCC-------------
T ss_pred             hcccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccceee-------------
Confidence            3567777777775322 223345677777777776555421  123455777777777543211110             


Q ss_pred             ecCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc-ccccccCCce
Q 012979          233 VSNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTI  311 (452)
Q Consensus       233 ~s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~l  311 (452)
                           .......++|++|.+....                 +...+.-.+.++.+++.|+++...+..+ ...+..++++
T Consensus       117 -----~~~~~~l~~l~~L~l~~n~-----------------l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L  174 (266)
T d1p9ag_         117 -----LGALRGLGELQELYLKGNE-----------------LKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL  174 (266)
T ss_dssp             -----SSTTTTCTTCCEEECTTSC-----------------CCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTC
T ss_pred             -----ccccccccccccccccccc-----------------cceeccccccccccchhcccccccccccCcccccccccc
Confidence                 0111245667777763221                 1111222345567778888875443322 2335567888


Q ss_pred             eEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchhh
Q 012979          312 KKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWSA  354 (452)
Q Consensus       312 kkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~~  354 (452)
                      +.|.|.-.    ....+    +.-+-..++|+.|++.++.|++
T Consensus       175 ~~L~Ls~N----~L~~l----p~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         175 DTLLLQEN----SLYTI----PKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             CEEECCSS----CCCCC----CTTTTTTCCCSEEECCSCCBCC
T ss_pred             ceeecccC----CCccc----ChhHCCCCCCCEEEecCCCCCC
Confidence            88876321    11111    2222257899999999887764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=4.6e-05  Score=70.41  Aligned_cols=148  Identities=22%  Similarity=0.246  Sum_probs=91.3

Q ss_pred             CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCccccccccEEEeee
Q 012979          157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKIHLLHLKSCLWTV  233 (452)
Q Consensus       157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l~~~sLr~l~l~~  233 (452)
                      ++|++|+|++..+   ....+..+++|++|+|.+-.++.  +.. .+.+|+|++|+|.++. ...               
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~--l~~-~~~l~~L~~L~Ls~N~-l~~---------------   91 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQV-DGTLPVLGTLDLSHNQ-LQS---------------   91 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE--EEC-CSCCTTCCEEECCSSC-CSS---------------
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc--ccc-cccccccccccccccc-ccc---------------
Confidence            5799999997322   23457889999999998876653  221 2568999999996542 111               


Q ss_pred             cCCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc-ccccccCCcee
Q 012979          234 SNAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIK  312 (452)
Q Consensus       234 s~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lk  312 (452)
                        .. ......|+|+.|++......                 ..+...+.++.++++|.+....+..+ ...+...++++
T Consensus        92 --~~-~~~~~l~~L~~L~l~~~~~~-----------------~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~  151 (266)
T d1p9ag_          92 --LP-LLGQTLPALTVLDVSFNRLT-----------------SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (266)
T ss_dssp             --CC-CCTTTCTTCCEEECCSSCCC-----------------CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             --cc-cccccccccccccccccccc-----------------eeeccccccccccccccccccccceeccccccccccch
Confidence              00 11225688999988533211                 11112445667888888875443332 23345678899


Q ss_pred             EEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          313 KLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       313 kL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      .|.+.-.    ....+   ++..+..+++|++|++...
T Consensus       152 ~l~l~~N----~l~~~---~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         152 KLSLANN----NLTEL---PAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             EEECTTS----CCSCC---CTTTTTTCTTCCEEECCSS
T ss_pred             hcccccc----ccccc---CccccccccccceeecccC
Confidence            9775322    11111   2356788999999999765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00014  Score=67.36  Aligned_cols=195  Identities=15%  Similarity=0.111  Sum_probs=94.0

Q ss_pred             CCceEEEeeecccccccccccccce-ecccCCCCcEEEeece---eecCCCCCCCCCCceeeeeeE-eecchhHHHHhcc
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAF-ISSCCKSLVELEVKNA---WLSVDNLNQMPMLTKLTLEFI-RLEDEDLDKVNDC  201 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~-~~~~c~~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~v-~i~~~~L~~ll~~  201 (452)
                      +++++|+|++..-       ..+|. ...+++.|++|++++.   .+.......++.+++|..... .+..-. ...++.
T Consensus        32 ~~~~~L~Ls~N~i-------~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~-~~~~~~  103 (284)
T d1ozna_          32 AASQRIFLHGNRI-------SHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHG  103 (284)
T ss_dssp             TTCSEEECTTSCC-------CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTT
T ss_pred             CCCCEEECcCCcC-------CCCCHHHhhcccccccccccccccccccccccccccccccccccccccccccc-chhhcc
Confidence            5678888864211       12222 2346788999999862   233344556677777755321 111100 122456


Q ss_pred             CCcCCeEEEecccccccC--c-cccccccEEEeeec---CCcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeec
Q 012979          202 FPCLQVLNLVGVGGFRQP--K-IHLLHLKSCLWTVS---NAPLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLE  275 (452)
Q Consensus       202 cP~Le~L~L~~~~g~~~~--~-l~~~sLr~l~l~~s---~~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~  275 (452)
                      +++|++|.|.++.-....  . -..+.|+.+.+.-.   ......--..++|+.|++.....                 .
T Consensus       104 l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l-----------------~  166 (284)
T d1ozna_         104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI-----------------S  166 (284)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-----------------C
T ss_pred             cccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc-----------------c
Confidence            899999998654311111  1 11334444433211   11111111334455555421110                 0


Q ss_pred             ccccccccccCcccEEEEeecccccc-ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCchh
Q 012979          276 VANEIRFQEFRNLMNLQLESSSLSSL-INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAWS  353 (452)
Q Consensus       276 ~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~~  353 (452)
                      ..+.-.+.++.+|+.+.++...+..+ ...+..+++++.|.+.-..    ....   ++..+..+++|++|++.+..|.
T Consensus       167 ~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~----i~~~---~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN----LSAL---PTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC----CSCC---CHHHHTTCTTCCEEECCSSCEE
T ss_pred             ccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc----cccc---cccccccccccCEEEecCCCCC
Confidence            11112445677777777764333222 2334556777776642211    1111   2356667788888888766554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.37  E-value=0.0007  Score=62.95  Aligned_cols=197  Identities=14%  Similarity=0.019  Sum_probs=88.0

Q ss_pred             ccCCCCcEEEeeceeecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEeccccc--cc-C-c-cccccccE
Q 012979          154 SCCKSLVELEVKNAWLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGF--RQ-P-K-IHLLHLKS  228 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~--~~-~-~-l~~~sLr~  228 (452)
                      ..++.|++|+|.+..+..-....+++|+.|.+....+..-. ......++.++.+........  .. . . ..+++|+.
T Consensus        76 ~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~-~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~  154 (305)
T d1xkua_          76 APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY  154 (305)
T ss_dssp             TTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred             hCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhh-hhhhhccccccccccccccccccCCCccccccccccCc
Confidence            35667777777653232111234456666666554443211 122345666666666432110  00 0 1 22345565


Q ss_pred             EEeeecCCcceEEecCCceeEEEeeeecCCce----eeeCCccceEEEe---ecccccccccccCcccEEEEeecccccc
Q 012979          229 CLWTVSNAPLSLAIYAPNLVKLELRCVKPKSL----VLQTPLLHDFCLS---LEVANEIRFQEFRNLMNLQLESSSLSSL  301 (452)
Q Consensus       229 l~l~~s~~~~~l~~~aP~Le~L~l~~~~~~~l----~i~~p~L~~~~l~---i~~~~~~~l~~~~~L~~L~l~~~~~~~~  301 (452)
                      +.+.-......-....++|++|++........    .-..+.++.+.+.   +...+.-.+.++++|++|++++..+..+
T Consensus       155 l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l  234 (305)
T d1xkua_         155 IRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV  234 (305)
T ss_dssp             EECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC
T ss_pred             cccccCCccccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc
Confidence            53322111110011346777777643211100    0011223333221   1111223445677788888776554444


Q ss_pred             ccccccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccCch
Q 012979          302 INTFPFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPRAW  352 (452)
Q Consensus       302 ~~l~~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~~~  352 (452)
                      ...+..+++|+.|.+.-. .....+......+.++...++|+.|+|.+.-|
T Consensus       235 p~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         235 PGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             CTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             ccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            344556777777775321 11111100111234556677788888876644

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.14  E-value=1.2e-05  Score=71.79  Aligned_cols=58  Identities=17%  Similarity=0.176  Sum_probs=32.1

Q ss_pred             cccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          153 SSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       153 ~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ...+++|++|+|.+..+ +.+++..+++|++|+|.+-.+..  +..+...+|.|++|++.+
T Consensus        44 l~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~  102 (198)
T d1m9la_          44 LSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISY  102 (198)
T ss_dssp             HHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSE
T ss_pred             HhcccccceeECcccCCCCcccccCCccccChhhccccccc--cccccccccccccccccc
Confidence            34556677777765433 34455566667777776666543  122223355666666644

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=97.14  E-value=0.00059  Score=64.93  Aligned_cols=164  Identities=15%  Similarity=0.130  Sum_probs=89.7

Q ss_pred             CCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCcc-ccccccEEEeeecCCc--ceEEecCCceeE
Q 012979          173 NLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPKI-HLLHLKSCLWTVSNAP--LSLAIYAPNLVK  249 (452)
Q Consensus       173 ~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~l-~~~sLr~l~l~~s~~~--~~l~~~aP~Le~  249 (452)
                      ....++++++|.+.+..+++-.  . ...+++|++|.+.++.-...+.+ .+++|+.+.+.-....  ..+. ..|+|++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~--~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~L~~  267 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDIT--P-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLS-GLTKLTE  267 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCG--G-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGT-TCTTCSE
T ss_pred             ccccccccceeeccCCccCCCC--c-ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCccc-ccccCCE
Confidence            4567899999999876665422  1 35689999999976642222222 3567888755422111  1122 5788999


Q ss_pred             EEeeeecCCce--eeeCCccceEEEeeccccc-ccccccCcccEEEEeeccccccccccccCCceeEEEEEeccCCCCcc
Q 012979          250 LELRCVKPKSL--VLQTPLLHDFCLSLEVANE-IRFQEFRNLMNLQLESSSLSSLINTFPFGKTIKKLKVELLKPGEPIG  326 (452)
Q Consensus       250 L~l~~~~~~~l--~i~~p~L~~~~l~i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~l~~~~p~lkkL~L~~~~~~~~~~  326 (452)
                      |++........  ....+.+..+.+....... ..+..+.+++.|+++...+..+ ..+..+|++++|++.-. ...+  
T Consensus       268 L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l-~~l~~l~~L~~L~L~~n-~l~~--  343 (384)
T d2omza2         268 LKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFANN-KVSD--  343 (384)
T ss_dssp             EECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCC-GGGGGCTTCCEEECCSS-CCCC--
T ss_pred             eeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCC-cccccCCCCCEEECCCC-CCCC--
Confidence            98754322111  0111222232221111111 1345667888888876554432 23566888888776321 1111  


Q ss_pred             ccccChhHHhhcCCCccEEEEccC
Q 012979          327 MKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       327 ~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                           ++ -+..+|+|++|++...
T Consensus       344 -----l~-~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         344 -----VS-SLANLTNINWLSAGHN  361 (384)
T ss_dssp             -----CG-GGGGCTTCCEEECCSS
T ss_pred             -----Ch-hHcCCCCCCEEECCCC
Confidence                 22 3567888888888654

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0001  Score=63.30  Aligned_cols=54  Identities=15%  Similarity=0.183  Sum_probs=23.3

Q ss_pred             CCCCcEEEeeceee-cCCCC-CCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          156 CKSLVELEVKNAWL-SVDNL-NQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       156 c~~L~~L~L~~~~~-d~~~l-~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      +..|++|+|++.-+ ..+++ ..+++|++|+|++-.+..  +.. ++.+|.|++|+|.+
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~--l~~-~~~l~~L~~L~ls~   72 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK--LDG-FPLLRRLKTLLVNN   72 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE--ECC-CCCCSSCCEEECCS
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc--cCC-cccCcchhhhhccc
Confidence            33455555554222 12222 334555555555443332  111 24455555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0017  Score=57.98  Aligned_cols=79  Identities=18%  Similarity=0.156  Sum_probs=49.0

Q ss_pred             CCceEEEeeeccccccccccccccee-cccCCCCcEEEeece----eecCCCCCCCCCCceeeeeeE-eecchhHHHHhc
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFI-SSCCKSLVELEVKNA----WLSVDNLNQMPMLTKLTLEFI-RLEDEDLDKVND  200 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~-~~~c~~L~~L~L~~~----~~d~~~l~~fp~Lr~L~L~~v-~i~~~~L~~ll~  200 (452)
                      .++++|++++..-       ..++.. ..++++|++|+|.+.    .++...+..++++++|.+... .+.... ...+.
T Consensus        29 ~~l~~L~Ls~n~i-------~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~~~~  100 (242)
T d1xwdc1          29 RNAIELRFVLTKL-------RVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQ  100 (242)
T ss_dssp             SCCSEEEEESCCC-------CEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-TTSEE
T ss_pred             CCCCEEECcCCcC-------CccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc-ccccc
Confidence            4788999974311       122222 346889999999863    233444667888888887542 222111 12346


Q ss_pred             cCCcCCeEEEecc
Q 012979          201 CFPCLQVLNLVGV  213 (452)
Q Consensus       201 ~cP~Le~L~L~~~  213 (452)
                      .+|+|++|.+.++
T Consensus       101 ~l~~L~~l~l~~~  113 (242)
T d1xwdc1         101 NLPNLQYLLISNT  113 (242)
T ss_dssp             CCTTCCEEEEESC
T ss_pred             ccccccccccchh
Confidence            6999999999764

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.90  E-value=0.00032  Score=57.22  Aligned_cols=80  Identities=25%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecc-hhHHHHhccCC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFP  203 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP  203 (452)
                      ...|++|++++..-       ..+|.....+++|++|+|.+..+ +.+++..+|+|++|++.+-.+.+ ..+.. +..||
T Consensus        19 l~~L~~L~ls~N~l-------~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~-l~~~~   90 (124)
T d1dcea3          19 LLLVTHLDLSHNRL-------RALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQP-LVSCP   90 (124)
T ss_dssp             GTTCCEEECCSSCC-------CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGG-GGGCT
T ss_pred             CCCCCEEECCCCcc-------CcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCCCchh-hcCCC
Confidence            46799999974311       12443345688999999997444 45678899999999999988875 34444 57899


Q ss_pred             cCCeEEEecc
Q 012979          204 CLQVLNLVGV  213 (452)
Q Consensus       204 ~Le~L~L~~~  213 (452)
                      +|++|++.+.
T Consensus        91 ~L~~L~l~~N  100 (124)
T d1dcea3          91 RLVLLNLQGN  100 (124)
T ss_dssp             TCCEEECTTS
T ss_pred             CCCEEECCCC
Confidence            9999999763

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.89  E-value=0.0015  Score=60.61  Aligned_cols=55  Identities=22%  Similarity=0.151  Sum_probs=29.6

Q ss_pred             ccCCCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEec
Q 012979          154 SCCKSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      .++++|++|++.+..+   .+..+..+++|++|+|.+..++.-.  .  ..++.|+.|.+..
T Consensus        52 ~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~--~--~~~~~l~~L~~~~  109 (305)
T d1xkua_          52 KNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP--E--KMPKTLQELRVHE  109 (305)
T ss_dssp             TTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC--S--SCCTTCCEEECCS
T ss_pred             hccccccccccccccccccchhhhhCCCccCEecccCCccCcCc--c--chhhhhhhhhccc
Confidence            3566777777765322   2233566677777777665444211  1  2245666666643

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00015  Score=62.10  Aligned_cols=79  Identities=13%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL  205 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L  205 (452)
                      ..+++|+|++..-       ..++-....++.|+.|+|++..+ ..+++..+|+|++|+|.+-.+..-. ..+.+.+|.|
T Consensus        18 ~~lr~L~L~~n~I-------~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L   89 (162)
T d1a9na_          18 VRDRELDLRGYKI-------PVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDL   89 (162)
T ss_dssp             TSCEEEECTTSCC-------CSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTC
T ss_pred             CcCcEEECCCCCC-------CccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCC-cccccccccc
Confidence            3578888863311       11233334577899999987433 3456778889999999887765311 1233558999


Q ss_pred             CeEEEecc
Q 012979          206 QVLNLVGV  213 (452)
Q Consensus       206 e~L~L~~~  213 (452)
                      ++|+|.++
T Consensus        90 ~~L~L~~N   97 (162)
T d1a9na_          90 TELILTNN   97 (162)
T ss_dssp             CEEECCSC
T ss_pred             ccceeccc
Confidence            99999765

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.0018  Score=59.60  Aligned_cols=169  Identities=18%  Similarity=0.120  Sum_probs=92.6

Q ss_pred             CCCcEEEeece---eecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecccccccCc---c-ccccccEE
Q 012979          157 KSLVELEVKNA---WLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGVGGFRQPK---I-HLLHLKSC  229 (452)
Q Consensus       157 ~~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~~g~~~~~---l-~~~sLr~l  229 (452)
                      +++++|+|++.   .++...+..+++|++|++.+..+..-.- .....++.+++|............   . .+++|+.+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~-~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA-AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccc-ccccccccccccccccccccccccchhhcccccCCEE
Confidence            46899999973   2334457889999999998776653222 223557888888764332221111   1 13344444


Q ss_pred             EeeecC---CcceEEecCCceeEEEeeeecCCceeeeCCccceEEEeecccccccccccCcccEEEEeecccccc-cccc
Q 012979          230 LWTVSN---APLSLAIYAPNLVKLELRCVKPKSLVLQTPLLHDFCLSLEVANEIRFQEFRNLMNLQLESSSLSSL-INTF  305 (452)
Q Consensus       230 ~l~~s~---~~~~l~~~aP~Le~L~l~~~~~~~l~i~~p~L~~~~l~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~l~  305 (452)
                      .+....   .........++|+++.+....                 ++..+.-.+.++.+|++|+++...+..+ ...+
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~-----------------l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f  173 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNA-----------------LQALPDDTFRDLGNLTHLFLHGNRISSVPERAF  173 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSC-----------------CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ecCCcccccccccccchhcccchhhhcccc-----------------ccccChhHhccccchhhcccccCcccccchhhh
Confidence            332111   011111123444444442111                 1112222455677899999986555433 2345


Q ss_pred             ccCCceeEEEEEeccCCCCccccccChhHHhhcCCCccEEEEccC
Q 012979          306 PFGKTIKKLKVELLKPGEPIGMKNLNLGVLFDVFPNLSSLTLGPR  350 (452)
Q Consensus       306 ~~~p~lkkL~L~~~~~~~~~~~l~~dl~~lL~~~PnL~~L~I~~~  350 (452)
                      ..+++++.|.+.-..    ...  + .+..+..+|+|++|++...
T Consensus       174 ~~l~~L~~l~l~~N~----l~~--i-~~~~f~~l~~L~~L~l~~N  211 (284)
T d1ozna_         174 RGLHSLDRLLLHQNR----VAH--V-HPHAFRDLGRLMTLYLFAN  211 (284)
T ss_dssp             TTCTTCCEEECCSSC----CCE--E-CTTTTTTCTTCCEEECCSS
T ss_pred             ccccccchhhhhhcc----ccc--c-ChhHhhhhhhccccccccc
Confidence            678899997753211    111  1 1355788999999999765

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0066  Score=53.91  Aligned_cols=57  Identities=14%  Similarity=0.118  Sum_probs=36.8

Q ss_pred             CCCcEEEeeceee---cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          157 KSLVELEVKNAWL---SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       157 ~~L~~L~L~~~~~---d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ++++.|+|.+..+   ....+..+++|++|+|.+..+...-=......++.+++|.+..+
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            4789999986322   23357789999999998764432100111345889999988654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=95.76  E-value=0.023  Score=52.37  Aligned_cols=185  Identities=17%  Similarity=0.077  Sum_probs=97.1

Q ss_pred             cCCceEEEeeecccccccccccccceecccCCCCcEEEeece-ee--cCCCCCCCCCCceeeeeeEeecchhHHHHhccC
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNA-WL--SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCF  202 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~-~~--d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~c  202 (452)
                      .+.||+|+|+++..     ....+|....++++|++|+|++. +.  .+..+..+++|++|++..-.+... +..-+..+
T Consensus        75 L~~L~~L~Ls~~N~-----l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l  148 (313)
T d1ogqa_          75 LPYLNFLYIGGINN-----LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSL  148 (313)
T ss_dssp             CTTCSEEEEEEETT-----EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGC
T ss_pred             Cccccccccccccc-----cccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccC
Confidence            57899999974311     12245655667899999999974 22  233467889999999976544321 11224569


Q ss_pred             CcCCeEEEeccccc-ccCc--cccccc-cEEEeee---cCCcceEEecCCceeEEEeeeecC----CceeeeCCccceEE
Q 012979          203 PCLQVLNLVGVGGF-RQPK--IHLLHL-KSCLWTV---SNAPLSLAIYAPNLVKLELRCVKP----KSLVLQTPLLHDFC  271 (452)
Q Consensus       203 P~Le~L~L~~~~g~-~~~~--l~~~sL-r~l~l~~---s~~~~~l~~~aP~Le~L~l~~~~~----~~l~i~~p~L~~~~  271 (452)
                      |.|+++.+.++.-. ..+.  ..+..+ +.+.+.-   +.... -......+..+++.....    .......+.++.+.
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~-~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             cccceeecccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            99999999764311 1222  223343 3332211   00000 011222333444321110    00011122333332


Q ss_pred             Eeeccc--ccccccccCcccEEEEeecccc-ccccccccCCceeEEEEE
Q 012979          272 LSLEVA--NEIRFQEFRNLMNLQLESSSLS-SLINTFPFGKTIKKLKVE  317 (452)
Q Consensus       272 l~i~~~--~~~~l~~~~~L~~L~l~~~~~~-~~~~l~~~~p~lkkL~L~  317 (452)
                      +.-...  .-..+..+.+|+.|+++...+. .+-.-+..+++|+.|.|.
T Consensus       228 ~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             CCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence            211110  1113456789999999865543 344456678999998863

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.65  E-value=0.003  Score=51.11  Aligned_cols=57  Identities=23%  Similarity=0.214  Sum_probs=41.9

Q ss_pred             ccCCCCcEEEeeceee-cC-CCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          154 SCCKSLVELEVKNAWL-SV-DNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       154 ~~c~~L~~L~L~~~~~-d~-~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      ..++.|++|+|.+..+ +. +++..+++|++|+|.+-.+++  +.. ++.+|+|++|++.++
T Consensus        17 ~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~--l~~-~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          17 EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VDG-VANLPRLQELLLCNN   75 (124)
T ss_dssp             GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCEEECCSS
T ss_pred             ccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccc--cCc-cccccccCeEECCCC
Confidence            4678899999987433 33 357788999999998877764  223 467999999999654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.68  E-value=0.011  Score=50.17  Aligned_cols=124  Identities=14%  Similarity=0.132  Sum_probs=77.1

Q ss_pred             cHHHHHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcc-hh-hcCCceEEEeeecccccccccc
Q 012979           69 PFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWL-PW-VCEELKFLSISDCWFQSCWRKS  146 (452)
Q Consensus        69 ~~~~~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL-~~-~~~~L~eL~l~~~~~~~~~~~~  146 (452)
                      ++.+.+.++....+.+++|.|.-...+                  ....+..-. .. ....|++|.|++..-..  ...
T Consensus         2 dv~~~l~~l~~n~~~L~~L~L~~~~~i------------------~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~--~~~   61 (167)
T d1pgva_           2 DVESCINRLREDDTDLKEVNINNMKRV------------------SKERIRSLIEAACNSKHIEKFSLANTAISD--SEA   61 (167)
T ss_dssp             CHHHHHHHHHTTCSSCCEEECTTCCSS------------------CHHHHHHHHHHHTTCSCCCEEECTTSCCBH--HHH
T ss_pred             CHHHHHHHHHhCCCCCcEEEeCCCCCC------------------CHHHHHHHHHHHhhCCccceeeccccccch--hHH
Confidence            345677888888899999999721111                  122222211 11 35789999997532211  001


Q ss_pred             cccceecccCCCCcEEEeeceeecCCC-------CCCCCCCceeeeeeEee---cc---hhHHHHhccCCcCCeEEEec
Q 012979          147 EVLAFISSCCKSLVELEVKNAWLSVDN-------LNQMPMLTKLTLEFIRL---ED---EDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       147 ~~L~~~~~~c~~L~~L~L~~~~~d~~~-------l~~fp~Lr~L~L~~v~i---~~---~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ..+.-....+++|++|+|+++.+...+       +..-+.|++|+|.+-.+   .+   .++..++..+|.|++|.+..
T Consensus        62 ~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~  140 (167)
T d1pgva_          62 RGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISF  140 (167)
T ss_dssp             TTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcC
Confidence            122223346789999999986554322       45668899999976543   22   45778888999999999854

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.67  E-value=0.011  Score=51.07  Aligned_cols=16  Identities=38%  Similarity=0.559  Sum_probs=7.8

Q ss_pred             CCCCCCceeeeeeEee
Q 012979          175 NQMPMLTKLTLEFIRL  190 (452)
Q Consensus       175 ~~fp~Lr~L~L~~v~i  190 (452)
                      ..+++|++|+|.+-.+
T Consensus        51 ~~l~~L~~L~L~~N~i   66 (192)
T d1w8aa_          51 GRLPHLVKLELKRNQL   66 (192)
T ss_dssp             GGCTTCCEEECCSSCC
T ss_pred             CCCceEeeeecccccc
Confidence            4455555555544333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=94.62  E-value=0.0032  Score=55.25  Aligned_cols=55  Identities=22%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             CCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecc-hhHHHHhccCCcCCeEEEec
Q 012979          157 KSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLED-EDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       157 ~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~-~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ++|++|+|.+..+ +.+++..+++|++|+|.+-.+++ ..+.. ++.+|+|++|.|.+
T Consensus        93 ~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~-l~~l~~L~~L~L~~  149 (198)
T d1m9la_          93 DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDK-LAALDKLEDLLLAG  149 (198)
T ss_dssp             HHCCEEECSEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHH-HTTTTTCSEEEECS
T ss_pred             ccccccccccccccccccccccccccccccccchhcccccccc-ccCCCccceeecCC
Confidence            3455566554333 12234455566666665555543 23333 35566666666644

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=94.32  E-value=0.056  Score=49.56  Aligned_cols=33  Identities=21%  Similarity=0.199  Sum_probs=19.4

Q ss_pred             CCCcEEEeeceee-cCCCCCCCCCCceeeeeeEe
Q 012979          157 KSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIR  189 (452)
Q Consensus       157 ~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~  189 (452)
                      +.|++|+|.+..+ ..+..+.+++|++|++.+..
T Consensus        98 ~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_          98 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccchhhhccceeecccccc
Confidence            3577777775322 33445566777777765543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.86  E-value=0.011  Score=49.74  Aligned_cols=125  Identities=18%  Similarity=0.142  Sum_probs=78.7

Q ss_pred             CcHHHHHHHHHhcCCCceEEEEeeecCcccccccccccccccccCCChhhhhhcch-h-hcCCceEEEeeeccccccccc
Q 012979           68 TPFKSILENLVRNSRHLESVSIGVDKSLVGISYDDAEDESDDLYLTDVEFVKNWLP-W-VCEELKFLSISDCWFQSCWRK  145 (452)
Q Consensus        68 ~~~~~~v~~~l~~~~~l~~L~L~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~WL~-~-~~~~L~eL~l~~~~~~~~~~~  145 (452)
                      +++.+++.++....|.+++|.|.-...                 + ....+..... . ....|++|+|++..-..  +.
T Consensus         3 ~~i~~~l~~~~~~~~~L~~L~L~~~~~-----------------i-~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~--~~   62 (166)
T d1io0a_           3 TDVEETLKRIQNNDPDLEEVNLNNIMN-----------------I-PVPTLKACAEALKTNTYVKKFSIVGTRSND--PV   62 (166)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECTTCTT-----------------C-CHHHHHHHHHHHTTCCSCCEEECTTSCCCH--HH
T ss_pred             ccHHHHHHHHHhcCCCCcEEEcCCCCC-----------------C-CHHHHHHHHHHHhcCCccCeeeccCCcccH--HH
Confidence            456678888888889999998872111                 1 1233333332 1 35789999997542111  01


Q ss_pred             ccccceecccCCCCcEEEeeceeecCC-------CCCCCCCCceeee--eeEeecc---hhHHHHhccCCcCCeEEEec
Q 012979          146 SEVLAFISSCCKSLVELEVKNAWLSVD-------NLNQMPMLTKLTL--EFIRLED---EDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       146 ~~~L~~~~~~c~~L~~L~L~~~~~d~~-------~l~~fp~Lr~L~L--~~v~i~~---~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ...+.-....+++|+.|+++++.+...       .+...++|+.+.|  ++..+.+   ..|...++.++.|++|+|..
T Consensus        63 ~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          63 AFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             HHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            112222334678999999998655322       2456788987665  4556665   45677788999999999954

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.66  E-value=0.028  Score=48.25  Aligned_cols=54  Identities=19%  Similarity=0.199  Sum_probs=26.0

Q ss_pred             cCCCCcEEEeece---eecCCCCCCCCCCceeeeeeEeec---chhHHHHhccCCcCCeEEEec
Q 012979          155 CCKSLVELEVKNA---WLSVDNLNQMPMLTKLTLEFIRLE---DEDLDKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       155 ~c~~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~v~i~---~~~L~~ll~~cP~Le~L~L~~  212 (452)
                      ..++|+.|+|++.   .+++..+..+++|++|+|.+-.+.   +..+    +.+|.|++|.|.+
T Consensus        76 ~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f----~~l~~L~~l~L~~  135 (192)
T d1w8aa_          76 GASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF----EHLNSLTSLNLAS  135 (192)
T ss_dssp             TCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS----TTCTTCCEEECTT
T ss_pred             cccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHh----cCCcccccccccc
Confidence            3455566666541   222333455566666665554443   2222    2355556655543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=0.013  Score=56.06  Aligned_cols=88  Identities=18%  Similarity=0.216  Sum_probs=58.8

Q ss_pred             hhcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecCCC-------CC-CCCCCceeeeeeEeecchhH
Q 012979          124 WVCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVDN-------LN-QMPMLTKLTLEFIRLEDEDL  195 (452)
Q Consensus       124 ~~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~~-------l~-~fp~Lr~L~L~~v~i~~~~L  195 (452)
                      .+.+.+|.|.|.+++-..  ..-..+......|++|++|+|++..+...+       +. .-++|++|+|.+..+++..+
T Consensus        24 ~~l~~l~~L~L~~~~i~~--~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTE--ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHTTCSEEEEESSCCCH--HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HhCCCCCEEEeCCCCCCH--HHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            456899999998663210  001123333457899999999975442111       11 23579999999988987654


Q ss_pred             ---HHHhccCCcCCeEEEecc
Q 012979          196 ---DKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       196 ---~~ll~~cP~Le~L~L~~~  213 (452)
                         ...+..++.|++|+|.++
T Consensus       102 ~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHHHTTSCTTCCEEECCSS
T ss_pred             ccccchhhccccccccccccc
Confidence               455678999999999654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=91.91  E-value=0.21  Score=45.36  Aligned_cols=88  Identities=17%  Similarity=0.063  Sum_probs=49.7

Q ss_pred             CCceEEEeeecccccccccccccceecccCCCCcEEEeeceee-cCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcC
Q 012979          127 EELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWL-SVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCL  205 (452)
Q Consensus       127 ~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~-d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~L  205 (452)
                      .++++|+|++.+-       ..+|.   ..++|++|+|++..+ ..|+  .+.+|++|.+.+..++  .+..   --+.|
T Consensus        38 ~~l~~LdLs~~~L-------~~lp~---~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~l~~n~l~--~l~~---lp~~L  100 (353)
T d1jl5a_          38 RQAHELELNNLGL-------SSLPE---LPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLK--ALSD---LPPLL  100 (353)
T ss_dssp             HTCSEEECTTSCC-------SCCCS---CCTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCS--CCCS---CCTTC
T ss_pred             cCCCEEEeCCCCC-------CCCCC---CCCCCCEEECCCCCCccccc--chhhhhhhhhhhcccc--hhhh---hcccc
Confidence            5788999874421       12332   245799999986333 2332  3578999988765444  2222   13569


Q ss_pred             CeEEEecccccccCc-cccccccEEEe
Q 012979          206 QVLNLVGVGGFRQPK-IHLLHLKSCLW  231 (452)
Q Consensus       206 e~L~L~~~~g~~~~~-l~~~sLr~l~l  231 (452)
                      ++|+|.++.-...+. -.+++|+++.+
T Consensus       101 ~~L~L~~n~l~~lp~~~~l~~L~~L~l  127 (353)
T d1jl5a_         101 EYLGVSNNQLEKLPELQNSSFLKIIDV  127 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEEC
T ss_pred             ccccccccccccccchhhhccceeecc
Confidence            999997653111121 23456666543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.37  E-value=0.051  Score=50.67  Aligned_cols=88  Identities=18%  Similarity=0.078  Sum_probs=49.5

Q ss_pred             hcCCceEEEeeecccccccccccccceecccCCCCcEEEeeceeecC-------CCCCCCCCCceeeeeeEeecchhHHH
Q 012979          125 VCEELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSV-------DNLNQMPMLTKLTLEFIRLEDEDLDK  197 (452)
Q Consensus       125 ~~~~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~-------~~l~~fp~Lr~L~L~~v~i~~~~L~~  197 (452)
                      ....+++|++....-.... ....+.-....+++|++|+|++..+..       ..+..+++|++|+|.+..+.+.....
T Consensus       184 ~~~~L~~L~L~~n~i~~~g-~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~  262 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEG-IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA  262 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHH-HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred             hhhhhcccccccccccccc-cccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHH
Confidence            3567888888532110000 001122223457788888887643321       12456788888888887777655544


Q ss_pred             Hh---cc--CCcCCeEEEecc
Q 012979          198 VN---DC--FPCLQVLNLVGV  213 (452)
Q Consensus       198 ll---~~--cP~Le~L~L~~~  213 (452)
                      +.   ..  .+.|++|+|.++
T Consensus       263 l~~~l~~~~~~~L~~L~ls~N  283 (344)
T d2ca6a1         263 VVDAFSKLENIGLQTLRLQYN  283 (344)
T ss_dssp             HHHHHHTCSSCCCCEEECCSS
T ss_pred             HHHHhhhccCCCCCEEECCCC
Confidence            43   22  456888888654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.09  E-value=0.14  Score=42.26  Aligned_cols=58  Identities=26%  Similarity=0.198  Sum_probs=37.7

Q ss_pred             cCCCCcEEEeec-e---eecCCCCCCCCCCceeeeeeEeecchhHHHHhccCCcCCeEEEecc
Q 012979          155 CCKSLVELEVKN-A---WLSVDNLNQMPMLTKLTLEFIRLEDEDLDKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       155 ~c~~L~~L~L~~-~---~~d~~~l~~fp~Lr~L~L~~v~i~~~~L~~ll~~cP~Le~L~L~~~  213 (452)
                      +.++|++|+|.+ .   .++..++..+++|++|+|.+-.+..-.- .....+|+|++|.|.++
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~-~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP-DAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT-TGGGSCSCCCEEECCSS
T ss_pred             CccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc-ccccccccccceeccCC
Confidence            456788888863 2   3344557788888888888766642111 12345888888888653

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.96  E-value=0.12  Score=48.08  Aligned_cols=58  Identities=14%  Similarity=0.103  Sum_probs=30.5

Q ss_pred             cCCCCcEEEeeceeecCCC-------CCCCCCCceeeeeeEeecchhH----HHHhccCCcCCeEEEec
Q 012979          155 CCKSLVELEVKNAWLSVDN-------LNQMPMLTKLTLEFIRLEDEDL----DKVNDCFPCLQVLNLVG  212 (452)
Q Consensus       155 ~c~~L~~L~L~~~~~d~~~-------l~~fp~Lr~L~L~~v~i~~~~L----~~ll~~cP~Le~L~L~~  212 (452)
                      .++.|+.|.+.+..+...+       +..+++|++|+|.+..+.++.+    ...++.+|+|++|+|.+
T Consensus       156 ~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~  224 (344)
T d2ca6a1         156 NAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQD  224 (344)
T ss_dssp             TCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCS
T ss_pred             cCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccc
Confidence            3455666666643222111       2345666666666655654332    23345666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.84  E-value=0.038  Score=52.58  Aligned_cols=98  Identities=17%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             CceEEEeeecccccccccccccceecccCCCCcEEEeeceeecCC-------CCCCCCCCceeeeeeEeecchhHHHHhc
Q 012979          128 ELKFLSISDCWFQSCWRKSEVLAFISSCCKSLVELEVKNAWLSVD-------NLNQMPMLTKLTLEFIRLEDEDLDKVND  200 (452)
Q Consensus       128 ~L~eL~l~~~~~~~~~~~~~~L~~~~~~c~~L~~L~L~~~~~d~~-------~l~~fp~Lr~L~L~~v~i~~~~L~~ll~  200 (452)
                      .||+|++++..-     .+..+..+...+++|++|+|.++.+...       .+..+|+|++|+|++-.+++.++..+..
T Consensus         3 ~l~~ld~~~~~i-----~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~   77 (460)
T d1z7xw1           3 DIQSLDIQCEEL-----SDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ   77 (460)
T ss_dssp             EEEEEEEESCCC-----CHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCCEEEeeCCcC-----ChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH
Confidence            478899963211     1112223344678999999998755322       2457899999999998888887777654


Q ss_pred             c----CCcCCeEEEecccccccCc--------cccccccEEEe
Q 012979          201 C----FPCLQVLNLVGVGGFRQPK--------IHLLHLKSCLW  231 (452)
Q Consensus       201 ~----cP~Le~L~L~~~~g~~~~~--------l~~~sLr~l~l  231 (452)
                      .    .+.|++|+|.+|. .....        -..++|+++.+
T Consensus        78 ~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L  119 (460)
T d1z7xw1          78 GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHL  119 (460)
T ss_dssp             TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEEC
T ss_pred             HHhcCCCCCCEEECCCCC-ccccccccccchhhcccccccccc
Confidence            3    4579999997763 22211        12567887754

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.58  E-value=0.048  Score=45.86  Aligned_cols=84  Identities=18%  Similarity=0.090  Sum_probs=54.2

Q ss_pred             cCCceEEEeeecccccccccccc---cceecccCCCCcEEEeeceeecCC---C----CCCCCCCceeeeeeEeecchhH
Q 012979          126 CEELKFLSISDCWFQSCWRKSEV---LAFISSCCKSLVELEVKNAWLSVD---N----LNQMPMLTKLTLEFIRLEDEDL  195 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~---L~~~~~~c~~L~~L~L~~~~~d~~---~----l~~fp~Lr~L~L~~v~i~~~~L  195 (452)
                      .+.|++|.|++...   . .+..   +-.....+++|++|+|+++.++..   .    +...+.|++|+|.+..|.++.+
T Consensus        14 ~~~L~~L~L~~~~~---i-~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~   89 (167)
T d1pgva_          14 DTDLKEVNINNMKR---V-SKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL   89 (167)
T ss_dssp             CSSCCEEECTTCCS---S-CHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred             CCCCcEEEeCCCCC---C-CHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHH
Confidence            47799999964211   1 1111   222233567899999998545321   2    2356889999998888887554


Q ss_pred             ---HHHhccCCcCCeEEEecc
Q 012979          196 ---DKVNDCFPCLQVLNLVGV  213 (452)
Q Consensus       196 ---~~ll~~cP~Le~L~L~~~  213 (452)
                         ...+..++.|++|.|.++
T Consensus        90 ~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          90 ARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHhCCcCCEEECCCC
Confidence               445777888999999643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.97  E-value=0.21  Score=41.25  Aligned_cols=78  Identities=26%  Similarity=0.237  Sum_probs=51.1

Q ss_pred             cCCceEEEeeeccccccccccccccee-cccCCCCcEEEeece---eecCCCCCCCCCCceeeeeeEeecc--hhHHHHh
Q 012979          126 CEELKFLSISDCWFQSCWRKSEVLAFI-SSCCKSLVELEVKNA---WLSVDNLNQMPMLTKLTLEFIRLED--EDLDKVN  199 (452)
Q Consensus       126 ~~~L~eL~l~~~~~~~~~~~~~~L~~~-~~~c~~L~~L~L~~~---~~d~~~l~~fp~Lr~L~L~~v~i~~--~~L~~ll  199 (452)
                      .+.+++|.+.+...   .   ..++.. ..+.++|+.|+|.+.   .+++.++..+++|++|+|.+-.+..  .+.   .
T Consensus        30 l~~l~~L~l~~n~~---l---~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~---~  100 (156)
T d2ifga3          30 AENLTELYIENQQH---L---QHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKT---V  100 (156)
T ss_dssp             CSCCSEEECCSCSS---C---CEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTT---T
T ss_pred             ccccCeeecCCCcc---c---cccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhh---h
Confidence            46788998853211   0   112222 235789999999963   4555568899999999999877752  221   1


Q ss_pred             ccCCcCCeEEEecc
Q 012979          200 DCFPCLQVLNLVGV  213 (452)
Q Consensus       200 ~~cP~Le~L~L~~~  213 (452)
                       ..+.|++|.|.+.
T Consensus       101 -~~~~l~~L~L~~N  113 (156)
T d2ifga3         101 -QGLSLQELVLSGN  113 (156)
T ss_dssp             -CSCCCCEEECCSS
T ss_pred             -ccccccccccCCC
Confidence             2446999999653