Citrus Sinensis ID: 013010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-
Protein Sequence
MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEIDI
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHcHHHHHHHHHcccccccccccHHccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccEEcHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cEEEccHccccccHHHHHHHHHHHHcccccccccccEEEccHHHccccHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHcHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccEEcc
Coil and Loop (DISEMBL)
mivskplnskhtcLVQQVLplmlknvpfdaklaasttktqnpftiESVADVLKSIprfffqsprsigrqtgfrhrtPLRQRILKKEAYNIANNVLvlgpaayrdpqkvtlglnkaTEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMsrrgngelvtTSSVTCLIKVLGEEGLVNEALATFYRMkqfrcrpdvyaYNVVINALCRVGNFNKARFLLEQmelpgfrcppdvytYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFkgfvpdvvAYNCLIDGCCKTYRIERALELFddmnkkgcipnrvtYNSFIRYYSVVNEIDKAIEMMRKMQnlnhgvptsssytPIIHALCEAGRVLEARDFLAELvdggsvpreyTYKLVCDALnaaeepslldDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEIDI
Flexible Loop (DISEMBL)
mivskplnskhtCLVQQVLPLMLKNVPFDAKLAasttktqnpftIESVADVLKSIPRFffqsprsigrqtgfrhrtPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALElfddmnkkgcipnrvtynsfIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELvdggsvpreYTYKLVCDALNaaeepsllddglrKRIRDGIEYrfrqvmkvkpimkhkellkcgeidi
Low Complexity Region (SEG)
MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEIDI
Disordered region (IsUnstruct)
**********HTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKC*****
Disordered Region (DISOPRED)
**************VQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEIDI
Disordered Region (DISEMBL)
MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEIDI
Disordered Region (DISPRO)
MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEI**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEIDI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	451	2.2.26 [Sep-21-2011]
Q1PFC5	458	Pentatricopeptide repeat-	yes	no	0.975	0.960	0.656	1e-177
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.547	0.327	0.312	1e-29
Q9FNL2	472	Pentatricopeptide repeat-	no	no	0.536	0.512	0.328	2e-29
Q9LPX2	644	Pentatricopeptide repeat-	no	no	0.501	0.350	0.284	9e-29
Q3EDF8	598	Pentatricopeptide repeat-	no	no	0.529	0.399	0.319	9e-29
Q9ASZ8	621	Pentatricopeptide repeat-	no	no	0.514	0.373	0.305	1e-28
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.439	0.265	0.331	2e-28
Q9ZUE9	536	Pentatricopeptide repeat-	no	no	0.498	0.419	0.323	6e-28
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.572	0.416	0.316	6e-28
Q0WKV3	637	Pentatricopeptide repeat-	no	no	0.518	0.367	0.296	8e-28

>sp|Q1PFC5|PP130_ARATH Pentatricopeptide repeat-containing protein At1g77405 OS=Arabidopsis thaliana GN=At1g77405 PE=2 SV=1

 Score =  622 bits (1603), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 293/446 (65%), Positives = 359/446 (80%), Gaps = 6/446 (1%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           M  S+PL ++   +V Q++  M++N PFDA LA+ST     P+T + V+DVL SIPRFFF
Sbjct: 1   MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
            SPRSIGRQ GFRHR+PL+QR L  E+    + VLVLGP AY DP+KV++GL KA EF+ 
Sbjct: 56  ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVL 179
           W+E  F F HNE+TC++M  + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D YTYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+GFVPDVV YNCLIDGCCK
Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCK 295

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           T RI RALELF+DM  KGC+PN+VTYNSFIRYYSV NEI+ AIEMMR M+ L HGVP SS
Sbjct: 296 TNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSS 355

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +YTP+IHAL E  R  EARD + E+V+ G VPREYTYKLVCDAL++    S LD+ L KR
Sbjct: 356 TYTPLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEGLASTLDEELHKR 415

Query: 420 IRDGIEYRFRQVMKVKPIMKHKELLK 445
           +R+GI+ R+ +VMK+KP M  KE+++
Sbjct: 416 MREGIQQRYSRVMKIKPTMARKEVVR 441

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 15/262 (5%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
           F +   V+   +F+++MS + +G      +   L+  L + G V  A+     M Q    
Sbjct: 269 FCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
           PDVY YN VI+ LC++G   +A  +L+QM      C P+  TY  LIS+ CK        
Sbjct: 328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD--CSPNTVTYNTLISTLCK-------- 377

Query: 262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                ++ EA  L R++  KG +PDV  +N LI G C T     A+ELF++M  KGC P+
Sbjct: 378 ---ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query: 322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
             TYN  I       ++D+A+ M+++M+ L+    +  +Y  +I   C+A +  EA +  
Sbjct: 435 EFTYNMLIDSLCSKGKLDEALNMLKQME-LSGCARSVITYNTLIDGFCKANKTREAEEIF 493

Query: 382 AELVDGGSVPREYTYKLVCDAL 403
            E+   G      TY  + D L
Sbjct: 494 DEMEVHGVSRNSVTYNTLIDGL 515

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100 OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/259 (32%), Positives = 125/259 (48%), Gaps = 17/259 (6%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG-EEGLVNEALATFYRMKQFR 199
           +    N +   + F K+M  R  G   T +S+  LIK L   +G V+  L  F  M +  
Sbjct: 130 ILVEENQLNLAFKFYKNM--REIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRG 187

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
           C PD Y Y  +I+ LCR G  ++A+ L  +M      C P V TYT LI+  C       
Sbjct: 188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--CAPTVVTYTSLINGLCG------ 239

Query: 260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
                 + + EA      M  KG  P+V  Y+ L+DG CK  R  +A+ELF+ M  +GC 
Sbjct: 240 -----SKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
           PN VTY + I       +I +A+E++ +M NL    P +  Y  +I   C   +  EA +
Sbjct: 295 PNMVTYTTLITGLCKEQKIQEAVELLDRM-NLQGLKPDAGLYGKVISGFCAISKFREAAN 353

Query: 380 FLAELVDGGSVPREYTYKL 398
           FL E++ GG  P   T+ +
Sbjct: 354 FLDEMILGGITPNRLTWNI 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1

 Score =  128 bits (322), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 27/253 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++ V+ + G    A+    +M++   + D   Y+++I+ LC+ G+ + A  L  +ME+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRIW--------------------E 270
           F+   D+ TY  LI  +C  G         R  I+R+I                     E
Sbjct: 294 FK--ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLRE 351

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A+ L + M+ +G  P+ + YN LIDG CK  R+E A+++ D M  KGC P+ +T+N  I 
Sbjct: 352 ADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILIN 411

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y   N ID  +E+ R+M +L   +  + +Y  ++   C++G++  A+    E+V     
Sbjct: 412 GYCKANRIDDGLELFREM-SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVR 470

Query: 391 PREYTYKLVCDAL 403
           P   +YK++ D L
Sbjct: 471 PDIVSYKILLDGL 483

Arabidopsis thaliana (taxid: 3702)

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  128 bits (322), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 130/260 (50%), Gaps = 21/260 (8%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           T LI+    +  V  A+     M+   C PDV  YNV++N +C+ G  ++A   L  M  
Sbjct: 243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM-- 300

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
           P   C P+V T+ I++ S C  G           R  +A  L   ML KGF P VV +N 
Sbjct: 301 PSSGCQPNVITHNIILRSMCSTG-----------RWMDAEKLLADMLRKGFSPSVVTFNI 349

Query: 293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
           LI+  C+   + RA+++ + M + GC PN ++YN  +  +    ++D+AIE + +M  ++
Sbjct: 350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM--VS 407

Query: 353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS- 410
            G  P   +Y  ++ ALC+ G+V +A + L +L   G  P   TY  V D L  A +   
Sbjct: 408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467

Query: 411 ---LLDDGLRKRIR-DGIEY 426
              LLD+   K ++ D I Y
Sbjct: 468 AIKLLDEMRAKDLKPDTITY 487

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1

 Score =  127 bits (320), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 126/259 (48%), Gaps = 27/259 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++KV+ + G    A+    +M++ + + D   Y+++I+ LC+ G+ + A  L  +ME+ G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRIW--------------------E 270
           F+   D+  YT LI  +C  G         R  I+R+I                     E
Sbjct: 278 FK--ADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L + M+ +G  PD V Y  LIDG CK  ++++A  + D M  KGC PN  T+N  I 
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFNILIN 395

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y   N ID  +E+ RKM +L   V  + +Y  +I   CE G++  A++   E+V     
Sbjct: 396 GYCKANLIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVR 454

Query: 391 PREYTYKLVCDALNAAEEP 409
           P   +YK++ D L    EP
Sbjct: 455 PDIVSYKILLDGLCDNGEP 473

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/214 (33%), Positives = 115/214 (53%), Gaps = 16/214 (7%)

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           F  M + +  P+V+ YN++I   C  GN + A  L ++ME  G  C P+V TY  LI  Y
Sbjct: 193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKG--CLPNVVTYNTLIDGY 250

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CK            R+I +   L R M  KG  P++++YN +I+G C+  R++    +  
Sbjct: 251 CKL-----------RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCE 370
           +MN++G   + VTYN+ I+ Y       +A+ M  +M  L HG+ P+  +YT +IH++C+
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM--LRHGLTPSVITYTSLIHSMCK 357

Query: 371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
           AG +  A +FL ++   G  P E TY  + D  +
Sbjct: 358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUE9|PP149_ARATH Pentatricopeptide repeat-containing protein At2g06000 OS=Arabidopsis thaliana GN=At2g06000 PE=2 SV=1

 Score =  125 bits (315), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 13/238 (5%)

Query: 169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
           T +   LI+ L   G   +AL     M  F C PD+  YN +I   C+    NKA  + +
Sbjct: 206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265

Query: 229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
            ++  G  C PDV TYT +IS YCK G           ++ EA+ L   ML  G  P  V
Sbjct: 266 DVK-SGSVCSPDVVTYTSMISGYCKAG-----------KMREASSLLDDMLRLGIYPTNV 313

Query: 289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
            +N L+DG  K   +  A E+   M   GC P+ VT+ S I  Y  V ++ +   +  +M
Sbjct: 314 TFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEM 373

Query: 349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA 406
            N     P + +Y+ +I+ALC   R+L+AR+ L +L     +P+ + Y  V D    A
Sbjct: 374 -NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKA 430

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  125 bits (314), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 88/278 (31%), Positives = 129/278 (46%), Gaps = 20/278 (7%)

Query: 150 GLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
           G WD    M R   G  +    VT   LI V  +EG + EA   +  M      PD   Y
Sbjct: 294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353

Query: 208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
           N +I+  C+    ++A  + + M   G  C PD+ TY+ILI+SYCK            +R
Sbjct: 354 NSLIDGFCKENCLHEANQMFDLMVSKG--CEPDIVTYSILINSYCK-----------AKR 400

Query: 268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
           + +   LFR +  KG +P+ + YN L+ G C++ ++  A ELF +M  +G  P+ VTY  
Sbjct: 401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query: 328 FIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
            +       E++KA+E+  KMQ   +  G+     Y  IIH +C A +V +A      L 
Sbjct: 461 LLDGLCDNGELNKALEIFEKMQKSRMTLGIGI---YNIIIHGMCNASKVDDAWSLFCSLS 517

Query: 386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
           D G  P   TY ++   L      S  D   RK   DG
Sbjct: 518 DKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1

 Score =  125 bits (313), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/263 (29%), Positives = 125/263 (47%), Gaps = 29/263 (11%)

Query: 175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG 234
           ++ V+ + G    A+    +M++   + D   Y+++I+ LC+ G+ + A  L  +ME+ G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKG 293

Query: 235 FRCPPDVYTYTILISSYCKYGMQTG----CRKAIRRRI--------------------WE 270
                ++ TY ILI  +C  G         R  I+R+I                     E
Sbjct: 294 I--TTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLRE 351

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           A  L + M+ +G  PD + Y  LIDG CK   +++A ++ D M  KGC PN  T+N  I 
Sbjct: 352 AEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV 390
            Y   N ID  +E+ RKM +L   V  + +Y  +I   CE G++  A++   E+V     
Sbjct: 412 GYCKANRIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVP 470

Query: 391 PREYTYKLVCDAL--NAAEEPSL 411
           P   TYK++ D L  N   E +L
Sbjct: 471 PNIVTYKILLDGLCDNGESEKAL 493

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
449464228	445	PREDICTED: pentatricopeptide repeat-cont	0.949	0.961	0.727	0.0
225456224	432	PREDICTED: pentatricopeptide repeat-cont	0.951	0.993	0.696	0.0
255558614	441	pentatricopeptide repeat-containing prot	0.966	0.988	0.682	0.0
145337672	458	pentatricopeptide repeat-containing prot	0.975	0.960	0.656	1e-175
297839599	459	binding protein [Arabidopsis lyrata subs	0.988	0.971	0.646	1e-175
356570227	732	PREDICTED: pentatricopeptide repeat-cont	0.962	0.592	0.619	1e-155
356560456	477	PREDICTED: LOW QUALITY PROTEIN: pentatri	0.866	0.819	0.615	1e-142
11079488	410	hypothetical protein [Arabidopsis thalia	0.866	0.953	0.543	1e-132
357466379	528	Pentatricopeptide repeat-containing prot	0.866	0.740	0.542	1e-125
297734359	381	unnamed protein product [Vitis vinifera]	0.838	0.992	0.494	1e-111

>gi|449464228|ref|XP_004149831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Cucumis sativus] gi|449518241|ref|XP_004166151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Cucumis sativus]

 Score =  674 bits (1740), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/430 (72%), Positives = 365/430 (84%), Gaps = 2/430 (0%)

Query: 14  LVQQVLPLMLKNVPFDAKL--AASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTG 71
           LV Q+L  MLKN PFD  +  AAST+ T   ++ +SV+DVL+S+PRFFFQS RSIG Q G
Sbjct: 14  LVDQILVAMLKNRPFDTHVHSAASTSTTHQLWSSDSVSDVLRSVPRFFFQSARSIGTQKG 73

Query: 72  FRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHN 131
           FRHRTPL+QR LK+EAY   NNVLVLGP A+RDP K  LGLNKA EF++WVE  F F H+
Sbjct: 74  FRHRTPLKQRKLKEEAYKFRNNVLVLGPGAHRDPFKAKLGLNKALEFFYWVETHFGFQHD 133

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT 191
           E+TC+EM  V ARGN + GLWDFLK+MSRR NG LVTT+++TCLIKVLGEEGLVNEAL  
Sbjct: 134 EITCREMACVLARGNTLMGLWDFLKEMSRRENGGLVTTATITCLIKVLGEEGLVNEALTA 193

Query: 192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
           FYRMKQF C+PDVYAYN VIN LCR+GNF KARFLLEQMELPGFRCPPD++TYTILISSY
Sbjct: 194 FYRMKQFHCKPDVYAYNTVINVLCRIGNFKKARFLLEQMELPGFRCPPDIFTYTILISSY 253

Query: 252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
           CKY +QTGCRKAIRRR+WEANHLFR+MLFKGF PDVV YN LIDGCCKTYRI+RALELF+
Sbjct: 254 CKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFSPDVVTYNSLIDGCCKTYRIQRALELFE 313

Query: 312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA 371
           DM+K+GC PNR+TYNSFIRYYS VNEID+AI+M+R MQ +NHG+ TSSSYTPIIHALCE 
Sbjct: 314 DMSKRGCTPNRLTYNSFIRYYSAVNEIDQAIKMLRMMQKMNHGIATSSSYTPIIHALCEG 373

Query: 372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQV 431
           G+V+EARDFL EL++ GSVPREYTY+LVC+ LN+A + SLLD+ + +RIR GIE R+R+V
Sbjct: 374 GKVIEARDFLLELLEEGSVPREYTYQLVCNLLNSAGKASLLDENVHERIRHGIENRYREV 433

Query: 432 MKVKPIMKHK 441
            KVK IM  K
Sbjct: 434 KKVKLIMSRK 443

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456224|ref|XP_002279168.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Vitis vinifera]

 Score =  654 bits (1688), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/441 (69%), Positives = 359/441 (81%), Gaps = 12/441 (2%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           MI SKP     + LV+QVL  M++N P DA    S  +   P+T +SV++VL+SIPR FF
Sbjct: 1   MIASKPRYHHRSSLVKQVLAAMVQNCPLDASPNKSCNQ---PWTTDSVSEVLRSIPRLFF 57

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
           QSPRSIGRQ GFRHR+PL+QR L +E               YRDP KV LG+ KA EFY 
Sbjct: 58  QSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYS 108

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG 180
           WVE  F F HNEMTC+EMG V ARGN +K LW+FL +M+R+G   +VTT+++TCL+KVLG
Sbjct: 109 WVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLG 168

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           EEGL N+ALA FYRMKQF C+PDVYAYN +I ALCRVGNF KARFLLEQMELPGFRCPPD
Sbjct: 169 EEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPD 228

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            +TYTILI SYCKY +QTGCRKA+RRR+WEANHLFR+MLFKGFVPDVV YNCLIDGCCKT
Sbjct: 229 SFTYTILIGSYCKYSLQTGCRKAVRRRLWEANHLFRIMLFKGFVPDVVTYNCLIDGCCKT 288

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
           YRIERALELFDDMNK+GC+PNRVTYNSFIRYYS VNEIDKA++M+ KM+ +NHG+PT+SS
Sbjct: 289 YRIERALELFDDMNKRGCVPNRVTYNSFIRYYSAVNEIDKAVDMLCKMKEMNHGIPTTSS 348

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           YTPIIHALCE GR+LEARDFL ELVDGGSVPREYTYK+VCD+L +A E ++L D LR RI
Sbjct: 349 YTPIIHALCETGRILEARDFLIELVDGGSVPREYTYKVVCDSLRSAGEANMLGDELRGRI 408

Query: 421 RDGIEYRFRQVMKVKPIMKHK 441
            +GIE R++QVMKVK IM H+
Sbjct: 409 ENGIENRYKQVMKVKLIMTHR 429

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558614|ref|XP_002520332.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223540551|gb|EEF42118.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  640 bits (1652), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 301/441 (68%), Positives = 367/441 (83%), Gaps = 5/441 (1%)

Query: 6   PLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRS 65
           PL   +T L+ QV+ LM+++ PFD +LA+STT +     +  ++DVL+SIPRFFFQS RS
Sbjct: 2   PLKPINTNLINQVISLMIQHRPFDIQLASSTTTSLLSSNL--ISDVLRSIPRFFFQSTRS 59

Query: 66  IGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERF 125
           +GRQ+  RHR+PL+QR LK+E +   N +L+LGPAAY+DP++V LG+ KA EF++WVE  
Sbjct: 60  VGRQSTTRHRSPLKQRSLKQETHKHNNKLLILGPAAYKDPKRVKLGVFKAMEFFYWVETN 119

Query: 126 FDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR---GNGELVTTSSVTCLIKVLGEE 182
            DF H E TC+EMG V AR N +  LW+FL++M++R      +LVTT++VTCLIKVLGEE
Sbjct: 120 CDFIHTESTCREMGFVLARANRLDKLWNFLQEMAKREVFDGRKLVTTNAVTCLIKVLGEE 179

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           GLV EAL+ FYRMK++ C+PDVYAYN +I ALCR+GNF KAR+LLEQMELPGF CPPD +
Sbjct: 180 GLVKEALSLFYRMKKYHCKPDVYAYNTIIYALCRIGNFKKARYLLEQMELPGFYCPPDTF 239

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
           TYTI+ISSYCKY +QTGCRKAIRRR+WEANHLFR+MLFKGF PDVV YNCLIDGCCKTYR
Sbjct: 240 TYTIMISSYCKYSLQTGCRKAIRRRLWEANHLFRIMLFKGFAPDVVTYNCLIDGCCKTYR 299

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
           IERALELF+DMN++GC+PNRVTYNSFIRYYS VNEIDKA+EM+R+MQN+NHG+ TSSSYT
Sbjct: 300 IERALELFEDMNRRGCVPNRVTYNSFIRYYSAVNEIDKAVEMLRRMQNMNHGLATSSSYT 359

Query: 363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
           PIIHALCEA RVLEARDFL ELVDGGS+PREYTYKLVC+ + +A E +L+DD    RI+D
Sbjct: 360 PIIHALCEADRVLEARDFLLELVDGGSIPREYTYKLVCETMKSAREVNLIDDEFHNRIKD 419

Query: 423 GIEYRFRQVMKVKPIMKHKEL 443
           GI+ RFRQV KVKPIM  K L
Sbjct: 420 GIDERFRQVKKVKPIMVRKML 440

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145337672|ref|NP_177865.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122244095|sp|Q1PFC5.1|PP130_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g77405 gi|91806103|gb|ABE65780.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332197853|gb|AEE35974.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  622 bits (1603), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 293/446 (65%), Positives = 359/446 (80%), Gaps = 6/446 (1%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           M  S+PL ++   +V Q++  M++N PFDA LA+ST     P+T + V+DVL SIPRFFF
Sbjct: 1   MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
            SPRSIGRQ GFRHR+PL+QR L  E+    + VLVLGP AY DP+KV++GL KA EF+ 
Sbjct: 56  ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVL 179
           W+E  F F HNE+TC++M  + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D YTYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+GFVPDVV YNCLIDGCCK
Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCK 295

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           T RI RALELF+DM  KGC+PN+VTYNSFIRYYSV NEI+ AIEMMR M+ L HGVP SS
Sbjct: 296 TNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSS 355

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +YTP+IHAL E  R  EARD + E+V+ G VPREYTYKLVCDAL++    S LD+ L KR
Sbjct: 356 TYTPLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEGLASTLDEELHKR 415

Query: 420 IRDGIEYRFRQVMKVKPIMKHKELLK 445
           +R+GI+ R+ +VMK+KP M  KE+++
Sbjct: 416 MREGIQQRYSRVMKIKPTMARKEVVR 441

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839599|ref|XP_002887681.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297333522|gb|EFH63940.1| binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 294/455 (64%), Positives = 365/455 (80%), Gaps = 9/455 (1%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           M  S+PL ++   ++ Q++  M++N PFDA LA+ST    NP+T + V+DVL+SIPRFFF
Sbjct: 1   MKPSQPLCNR---IIDQLIAAMIQNRPFDAVLASSTVA--NPWTQQLVSDVLRSIPRFFF 55

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
            SPRSIGRQ GFRHR+PL+QR L  E+    + VLVLGP AY DP+K++LGL KA EF+ 
Sbjct: 56  ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYIDPKKISLGLQKALEFFF 115

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVL 179
           W+E  F F HNE+TC++M  + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K L
Sbjct: 116 WIEIHFGFGHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D YTYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+GFVPDVV YNCLIDGCCK
Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCK 295

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           T RI RALELF+DM  KGC+PN+VTYNSFIRYYSV NEI+ AIEMMR M+ + HGVP SS
Sbjct: 296 TNRIGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKMGHGVPGSS 355

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR 419
           +YTP+IHAL E  R  EARD L E+V+ G VPREYTYKLV DAL++      LD+ L KR
Sbjct: 356 TYTPLIHALVETRRAAEARDLLVEMVEAGLVPREYTYKLVWDALSSEGMAGTLDEELHKR 415

Query: 420 IRDGIEYRFRQVMKVKPIMKHKELLKCG---EIDI 451
           +R+GI+ R+R+VMK+KP+M  K++++     EID+
Sbjct: 416 MREGIQQRYRRVMKIKPVMARKDVVQKSDFHEIDM 450

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570227|ref|XP_003553291.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77405-like [Glycine max]

 Score =  556 bits (1432), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 275/444 (61%), Positives = 334/444 (75%), Gaps = 10/444 (2%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           MI +  L   H  L  Q L L++K++PFDA     +      +T ++V +VL+ I R+  
Sbjct: 287 MIRTNSLRHFHKHLASQTLVLVIKDLPFDAHPPPPSPSPPP-WTNDAVTEVLRLISRYTL 345

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVT-LGLNKATEFY 119
           QSPRSIGRQ  FRHRTPLRQR L  E + + +N L+LGPAA+ DP+K   LG  KA EF+
Sbjct: 346 QSPRSIGRQHTFRHRTPLRQRNLNLEHHKLRSNTLLLGPAAHLDPRKAHHLGPLKALEFF 405

Query: 120 HWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL 179
            WVE  F+F H+E TC+E+  +  R N +K LW FLK      +   VTT++VTCLIK+L
Sbjct: 406 RWVEARFNFPHSEPTCRELACLLGRANALKPLWHFLK------HSPHVTTATVTCLIKLL 459

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GE+ L +EAL TF+RMKQFRC+PD ++YN +I+ALCRVG F KAR LL+QMELPGFRCPP
Sbjct: 460 GEQALADEALLTFHRMKQFRCKPDTHSYNTLIHALCRVGKFTKARSLLQQMELPGFRCPP 519

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D +TYTILISSYC++G+ TGCRKA RRRI+EA  LFRLMLF+  VPDVV YN LIDGCCK
Sbjct: 520 DTFTYTILISSYCRHGILTGCRKARRRRIYEAGRLFRLMLFRKLVPDVVTYNALIDGCCK 579

Query: 300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS 359
           T R+ERALELFDDM ++G +PNRVTY  FIRYY VVNEIDK +EM+R+MQ L HGVP SS
Sbjct: 580 TLRVERALELFDDMKRRGLVPNRVTYGCFIRYYCVVNEIDKGVEMLREMQRLGHGVPGSS 639

Query: 360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLD--DGLR 417
           SYTPIIHALCEAGRV+EA  FL ELV+GGSVPREYTY LVCD L AA E  LL+  DG+ 
Sbjct: 640 SYTPIIHALCEAGRVVEAWWFLVELVEGGSVPREYTYGLVCDRLRAAGEGGLLEDHDGVH 699

Query: 418 KRIRDGIEYRFRQVMKVKPIMKHK 441
           KRI+DGI  R+RQ+MKVKP+M  K
Sbjct: 700 KRIKDGIWNRYRQMMKVKPVMARK 723

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560456|ref|XP_003548508.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At1g77405-like [Glycine max]

 Score =  511 bits (1317), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/406 (61%), Positives = 306/406 (75%), Gaps = 15/406 (3%)

Query: 43  FTIESVADVLKSIPRFFFQSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAY 102
           ++ ++V +VL+SI  +  Q PRSIGRQ  FRHRTPLRQR L  E   + NN L+LGP A+
Sbjct: 71  WSNDAVTEVLRSISHYTLQFPRSIGRQHTFRHRTPLRQRNLNLEHRKLRNNTLLLGPTAH 130

Query: 103 RDPQKVT-LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR 161
            DP K   LG  KA EF+HW+E  F+F H+E TC+E+  + AR   +K LW FLK     
Sbjct: 131 LDPYKAHHLGPLKALEFFHWLESRFNFPHSEPTCRELACLLARATALKPLWHFLK----- 185

Query: 162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN 221
            +   VTT++VTCLIK+L E+GL +EAL TF+RMKQFRCRPD ++YN +I+ALCRVGNF 
Sbjct: 186 -HSPHVTTATVTCLIKLLSEQGLADEALLTFHRMKQFRCRPDTHSYNTLIHALCRVGNFA 244

Query: 222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK 281
           KAR +L+QMELPGFRCPPD +TY+ILISSYC++G+ TGC KA RRRI+EA  LFRLMLF+
Sbjct: 245 KARSILQQMELPGFRCPPDTFTYSILISSYCRHGILTGCWKATRRRIYEAGRLFRLMLFR 304

Query: 282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA 341
             VPDVV YN LIDGCCKT R+ERALELFDDM + G +PNRVTY  F+ YY  VNEIDK 
Sbjct: 305 KLVPDVVTYNALIDGCCKTLRMERALELFDDMKRSGVVPNRVTYGCFVSYYCAVNEIDKG 364

Query: 342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD 401
           +EM+R+MQ L  GV +SS YTPIIHALCEAGRV+EA  FL ELV+GGS+PREYTY LVCD
Sbjct: 365 VEMLREMQRLGDGVASSSLYTPIIHALCEAGRVVEACGFLVELVEGGSMPREYTYGLVCD 424

Query: 402 ALNAAEEPSLLD------DGLRKRIRDGIEYRFRQVMKVKPIMKHK 441
              AA E  L +      DG+ KRI+DGI  R+RQ+MKVKP+M+ K
Sbjct: 425 X--AAGEGGLFEDGDGYGDGMHKRIKDGIWNRYRQIMKVKPVMRRK 468

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|11079488|gb|AAG29200.1|AC078898_10 hypothetical protein [Arabidopsis thaliana]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 243/447 (54%), Positives = 308/447 (68%), Gaps = 56/447 (12%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           M  S+PL ++   +V Q++  M++N PFDA LA+ST     P+T + V+DVL SIPRFFF
Sbjct: 1   MKPSQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFF 55

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
            SPRSIGRQ GFRHR+PL+QR L  E+    + VLVLGP AY DP+KV++GL KA EF+ 
Sbjct: 56  ISPRSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFF 115

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVL 179
           W+E  F F HNE+TC++M  + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K L
Sbjct: 116 WIETHFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCL 175

Query: 180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP 239
           GEEG V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PP
Sbjct: 176 GEEGFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPP 235

Query: 240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK 299
           D YTYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+G+      Y+        
Sbjct: 236 DTYTYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGY------YSV------- 282

Query: 300 TYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS 358
           T  IE A+E+   M K G  +P   TY                                 
Sbjct: 283 TNEIEGAIEMMRTMKKLGHGVPGSSTY--------------------------------- 309

Query: 359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRK 418
              TP+IHAL E  R  EARD + E+V+ G VPREYTYKLVCDAL++    S LD+ L K
Sbjct: 310 ---TPLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEGLASTLDEELHK 366

Query: 419 RIRDGIEYRFRQVMKVKPIMKHKELLK 445
           R+R+GI+ R+ +VMK+KP M  KE+++
Sbjct: 367 RMREGIQQRYSRVMKIKPTMARKEVVR 393

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466379|ref|XP_003603474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355492522|gb|AES73725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 232/428 (54%), Positives = 295/428 (68%), Gaps = 37/428 (8%)

Query: 14  LVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSPRSIGRQTG-F 72
           L +Q L  ++K++PF+     ++  +   +T ++V ++L+ I R+ FQS   IG Q   F
Sbjct: 15  LAKQALVAVIKDIPFET----TSPPSNLIWTPDAVIELLRFISRYSFQS---IGCQNNPF 67

Query: 73  RHRT-PLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHN 131
           RHR+ PL                       + +P    L L K+ EF HW+   F+F H 
Sbjct: 68  RHRSVPLSN-----------------FKHPHTNPYLTNLSLRKSHEFLHWIHSHFNFLHT 110

Query: 132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRR----GNGELVTTSSVTCLIKVLGEEGLVNE 187
           + T +EM I+ A+ +N   LW FLK  S R     +  +VTT +VTCLIK+LGE+GL  E
Sbjct: 111 QSTTREMAILIAKSHNTNALWTFLKHFSIRLHTNDHNTIVTTPTVTCLIKLLGEQGLAKE 170

Query: 188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL 247
           AL TFYRM+QF C+PDV AYN +INA+C VGNF KAR LL+QMELPGF  PPDV+TYT+L
Sbjct: 171 ALLTFYRMRQFGCKPDVQAYNALINAMCSVGNFTKARHLLQQMELPGFHSPPDVFTYTVL 230

Query: 248 ISSYCKYGMQ-TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA 306
           ISSYC+YG++ +GCRKA+RRR++EAN LFR+M+FKG VPDVVAYN LIDGCCKTYR+ RA
Sbjct: 231 ISSYCRYGVKISGCRKAVRRRLYEANRLFRIMVFKGIVPDVVAYNALIDGCCKTYRVGRA 290

Query: 307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG------VPTSSS 360
           LELFDDM K+GC+PNRVTY+SFIRYYSVVNEIDKA+E +R+MQ  N+       V + SS
Sbjct: 291 LELFDDMKKRGCVPNRVTYDSFIRYYSVVNEIDKAVEFLREMQRSNYDGENGIVVGSCSS 350

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           YTPIIHALCE GRV +A  FL EL+D GSVPREYTYKLVCD L    E  LL   + +RI
Sbjct: 351 YTPIIHALCEVGRVADAWSFLVELIDNGSVPREYTYKLVCDGLRLKGEDELLSGEVHRRI 410

Query: 421 RDGIEYRF 428
           + GI  R+
Sbjct: 411 KCGILERY 418

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734359|emb|CBI15606.3| unnamed protein product [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 218/441 (49%), Positives = 273/441 (61%), Gaps = 63/441 (14%)

Query: 1   MIVSKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFF 60
           MI SKP     + LV+QVL  M++N P DA    S  +   P+T +SV++VL+SIPR FF
Sbjct: 1   MIASKPRYHHRSSLVKQVLAAMVQNCPLDASPNKSCNQ---PWTTDSVSEVLRSIPRLFF 57

Query: 61  QSPRSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYH 120
           QSPRSIGRQ GFRHR+PL+QR L +E               YRDP KV LG+ KA EFY 
Sbjct: 58  QSPRSIGRQKGFRHRSPLKQRNLYQEPNKFHR---------YRDPHKVKLGVEKAMEFYS 108

Query: 121 WVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG 180
           WVE  F F HNEMTC+EMG V ARGN +K LW+FL +M+R+G   +VTT+++TCL+KVLG
Sbjct: 109 WVETQFGFSHNEMTCREMGCVLARGNRLKVLWEFLHEMARKGGNGVVTTATITCLMKVLG 168

Query: 181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD 240
           EEGL N+ALA FYRMKQF C+PDVYAYN +I ALCRVGNF KARFLLEQMELPGFRCPPD
Sbjct: 169 EEGLANQALAAFYRMKQFHCKPDVYAYNTIIYALCRVGNFRKARFLLEQMELPGFRCPPD 228

Query: 241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT 300
            +TYTILI SYCKY +QTGCRKA+RRR+WEANHLFR+ML+   V ++   +  +D  CK 
Sbjct: 229 SFTYTILIGSYCKYSLQTGCRKAVRRRLWEANHLFRIMLYYSAVNEI---DKAVDMLCK- 284

Query: 301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS 360
                      +MN    IP   +Y   I        I +A + + ++ +    VP   +
Sbjct: 285 ---------MKEMNHG--IPTTSSYTPIIHALCETGRILEARDFLIELVD-GGSVPREYT 332

Query: 361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI 420
           Y  +  +L  AG                                   E ++L D LR RI
Sbjct: 333 YKVVCDSLRSAG-----------------------------------EANMLGDELRGRI 357

Query: 421 RDGIEYRFRQVMKVKPIMKHK 441
            +GIE R++QVMKVK IM H+
Sbjct: 358 ENGIENRYKQVMKVKLIMTHR 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	451
TAIR|locus:2825891	458	AT1G77405 [Arabidopsis thalian	0.968	0.954	0.659	8.4e-161
TAIR|locus:2161408	472	AT5G46100 "AT5G46100" [Arabido	0.536	0.512	0.332	5.8e-28
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.547	0.327	0.312	1e-26
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.529	0.399	0.319	1.2e-25
TAIR|locus:2064707	536	AT2G06000 "AT2G06000" [Arabido	0.527	0.444	0.311	1.4e-25
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.439	0.265	0.331	1.7e-25
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.572	0.416	0.316	4.5e-25
TAIR|locus:1009023134	644	AT1G12775 [Arabidopsis thalian	0.616	0.431	0.279	1.2e-24
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.538	0.381	0.302	3.6e-24
TAIR|locus:2174165	504	AT5G16640 [Arabidopsis thalian	0.547	0.490	0.303	6.4e-24

TAIR|locus:2825891 AT1G77405 [Arabidopsis thaliana (taxid:3702)]

 Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
 Identities = 292/443 (65%), Positives = 358/443 (80%)

Query:     4 SKPLNSKHTCLVQQVLPLMLKNVPFDAKLAASTTKTQNPFTIESVADVLKSIPRFFFQSP 63
             S+PL ++   +V Q++  M++N PFDA LA+ST     P+T + V+DVL SIPRFFF SP
Sbjct:     4 SQPLCNR---IVDQLITAMIQNRPFDAVLASSTVA--KPWTQQLVSDVLHSIPRFFFISP 58

Query:    64 RSIGRQTGFRHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVE 123
             RSIGRQ GFRHR+PL+QR L  E+    + VLVLGP AY DP+KV++GL KA EF+ W+E
Sbjct:    59 RSIGRQKGFRHRSPLKQRNLSDESQRRRSEVLVLGPGAYMDPKKVSIGLQKALEFFFWIE 118

Query:   124 RFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEE 182
               F F HNE+TC++M  + A+GN+ KGLWDFL+ +SRR NG+ +VTT+S+TCL+K LGEE
Sbjct:   119 THFGFDHNEITCRDMACLLAKGNDFKGLWDFLRQVSRRENGKNVVTTASITCLMKCLGEE 178

Query:   183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
             G V EALATFYRMK++ C+PDVYAYN +INALCRVGNF KARFLL+QM+LPGFR PPD Y
Sbjct:   179 GFVKEALATFYRMKEYHCKPDVYAYNTIINALCRVGNFKKARFLLDQMQLPGFRYPPDTY 238

Query:   243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
             TYTILISSYC+YGMQTGCRKAIRRR+WEAN +FR MLF+GFVPDVV YNCLIDGCCKT R
Sbjct:   239 TYTILISSYCRYGMQTGCRKAIRRRMWEANRMFREMLFRGFVPDVVTYNCLIDGCCKTNR 298

Query:   303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT 362
             I RALELF+DM  KGC+PN+VTYNSFIRYYSV NEI+ AIEMMR M+ L HGVP SS+YT
Sbjct:   299 IGRALELFEDMKTKGCVPNQVTYNSFIRYYSVTNEIEGAIEMMRTMKKLGHGVPGSSTYT 358

Query:   363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD 422
             P+IHAL E  R  EARD + E+V+ G VPREYTYKLVCDAL++    S LD+ L KR+R+
Sbjct:   359 PLIHALVETRRAAEARDLVVEMVEAGLVPREYTYKLVCDALSSEGLASTLDEELHKRMRE 418

Query:   423 GIEYRFRQVMKVKPIMKHKELLK 445
             GI+ R+ +VMK+KP M  KE+++
Sbjct:   419 GIQQRYSRVMKIKPTMARKEVVR 441

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161408 AT5G46100 "AT5G46100" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 5.8e-28, P = 5.8e-28
 Identities = 86/259 (33%), Positives = 126/259 (48%)

Query:   141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL-GEEGLVNEALATFYRMKQFR 199
             +    N +   + F K+M  R  G   T +S+  LIK L   +G V+  L  F  M +  
Sbjct:   130 ILVEENQLNLAFKFYKNM--REIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRG 187

Query:   200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG 259
             C PD Y Y  +I+ LCR G  ++A+ L  +M      C P V TYT LI+  C      G
Sbjct:   188 CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKD--CAPTVVTYTSLINGLC------G 239

Query:   260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI 319
              +      + EA      M  KG  P+V  Y+ L+DG CK  R  +A+ELF+ M  +GC 
Sbjct:   240 SKN-----VDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCR 294

Query:   320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD 379
             PN VTY + I       +I +A+E++ +M NL    P +  Y  +I   C   +  EA +
Sbjct:   295 PNMVTYTTLITGLCKEQKIQEAVELLDRM-NLQGLKPDAGLYGKVISGFCAISKFREAAN 353

Query:   380 FLAELVDGGSVPREYTYKL 398
             FL E++ GG  P   T+ +
Sbjct:   354 FLDEMILGGITPNRLTWNI 372

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 82/262 (31%), Positives = 129/262 (49%)

Query:   142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR 201
             F +   V+   +F+++MS + +G      +   L+  L + G V  A+     M Q    
Sbjct:   269 FCKEGRVEDALNFIQEMSNQ-DGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYD 327

Query:   202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR 261
             PDVY YN VI+ LC++G   +A  +L+QM      C P+  TY  LIS+ CK        
Sbjct:   328 PDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD--CSPNTVTYNTLISTLCK-------- 377

Query:   262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
                  ++ EA  L R++  KG +PDV  +N LI G C T     A+ELF++M  KGC P+
Sbjct:   378 ---ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query:   322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL 381
               TYN  I       ++D+A+ M+++M+ L+    +  +Y  +I   C+A +  EA +  
Sbjct:   435 EFTYNMLIDSLCSKGKLDEALNMLKQME-LSGCARSVITYNTLIDGFCKANKTREAEEIF 493

Query:   382 AELVDGGSVPREYTYKLVCDAL 403
              E+   G      TY  + D L
Sbjct:   494 DEMEVHGVSRNSVTYNTLIDGL 515

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 311 (114.5 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 83/260 (31%), Positives = 130/260 (50%)

Query:   173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
             T LI+    +  V  A+     M+   C PDV  YNV++N +C+ G  ++A   L  M  
Sbjct:   243 TILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDM-- 300

Query:   233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNC 292
             P   C P+V T+ I++ S C  G           R  +A  L   ML KGF P VV +N 
Sbjct:   301 PSSGCQPNVITHNIILRSMCSTG-----------RWMDAEKLLADMLRKGFSPSVVTFNI 349

Query:   293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN 352
             LI+  C+   + RA+++ + M + GC PN ++YN  +  +    ++D+AIE + +M  ++
Sbjct:   350 LINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERM--VS 407

Query:   353 HGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS- 410
              G  P   +Y  ++ ALC+ G+V +A + L +L   G  P   TY  V D L  A +   
Sbjct:   408 RGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGK 467

Query:   411 ---LLDDGLRKRIR-DGIEY 426
                LLD+   K ++ D I Y
Sbjct:   468 AIKLLDEMRAKDLKPDTITY 487

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2064707 AT2G06000 "AT2G06000" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 1.4e-25, Sum P(2) = 1.4e-25
 Identities = 79/254 (31%), Positives = 122/254 (48%)

Query:   169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE 228
             T +   LI+ L   G   +AL     M  F C PD+  YN +I   C+    NKA  + +
Sbjct:   206 TKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFK 265

Query:   229 QMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV 288
              ++  G  C PDV TYT +IS YCK G           ++ EA+ L   ML  G  P  V
Sbjct:   266 DVK-SGSVCSPDVVTYTSMISGYCKAG-----------KMREASSLLDDMLRLGIYPTNV 313

Query:   289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM 348
              +N L+DG  K   +  A E+   M   GC P+ VT+ S I  Y  V ++ +   +  +M
Sbjct:   314 TFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEM 373

Query:   349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA-- 406
              N     P + +Y+ +I+ALC   R+L+AR+ L +L     +P+ + Y  V D    A  
Sbjct:   374 -NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGK 432

Query:   407 -EEPSLLDDGLRKR 419
               E +++ + + K+
Sbjct:   433 VNEANVIVEEMEKK 446

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 1.7e-25, P = 1.7e-25
 Identities = 71/214 (33%), Positives = 115/214 (53%)

Query:   192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY 251
             F  M + +  P+V+ YN++I   C  GN + A  L ++ME  G  C P+V TY  LI  Y
Sbjct:   193 FKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKG--CLPNVVTYNTLIDGY 250

Query:   252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD 311
             CK            R+I +   L R M  KG  P++++YN +I+G C+  R++    +  
Sbjct:   251 CKL-----------RKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299

Query:   312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCE 370
             +MN++G   + VTYN+ I+ Y       +A+ M  +M  L HG+ P+  +YT +IH++C+
Sbjct:   300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEM--LRHGLTPSVITYTSLIHSMCK 357

Query:   371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALN 404
             AG +  A +FL ++   G  P E TY  + D  +
Sbjct:   358 AGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFS 391

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 4.5e-25, P = 4.5e-25
 Identities = 88/278 (31%), Positives = 129/278 (46%)

Query:   150 GLWDFLKDMSRRGNGELVTTSSVT--CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY 207
             G WD    M R   G  +    VT   LI V  +EG + EA   +  M      PD   Y
Sbjct:   294 GKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITY 353

Query:   208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR 267
             N +I+  C+    ++A  + + M   G  C PD+ TY+ILI+SYCK            +R
Sbjct:   354 NSLIDGFCKENCLHEANQMFDLMVSKG--CEPDIVTYSILINSYCK-----------AKR 400

Query:   268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS 327
             + +   LFR +  KG +P+ + YN L+ G C++ ++  A ELF +M  +G  P+ VTY  
Sbjct:   401 VDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGI 460

Query:   328 FIRYYSVVNEIDKAIEMMRKMQN--LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV 385
              +       E++KA+E+  KMQ   +  G+     Y  IIH +C A +V +A      L 
Sbjct:   461 LLDGLCDNGELNKALEIFEKMQKSRMTLGI---GIYNIIIHGMCNASKVDDAWSLFCSLS 517

Query:   386 DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG 423
             D G  P   TY ++   L      S  D   RK   DG
Sbjct:   518 DKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDG 555

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 83/297 (27%), Positives = 145/297 (48%)

Query:   110 LGLN-KATEFYHWVERFFD--FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL 166
             L LN K ++    ++R  +  F  NE+T   +  V  +        + L+ M  R N +L
Sbjct:   203 LCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEER-NIKL 261

Query:   167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL 226
                   + +I  L ++G ++ A   F  M+    + D+  YN +I   C  G ++    L
Sbjct:   262 DAVK-YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKL 320

Query:   227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD 286
             L  M     +  P+V T+++LI S+ K G           ++ EA+ L + M+ +G  P+
Sbjct:   321 LRDMIKR--KISPNVVTFSVLIDSFVKEG-----------KLREADQLLKEMMQRGIAPN 367

Query:   287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR 346
              + YN LIDG CK  R+E A+++ D M  KGC P+ +T+N  I  Y   N ID  +E+ R
Sbjct:   368 TITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFR 427

Query:   347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL 403
             +M +L   +  + +Y  ++   C++G++  A+    E+V     P   +YK++ D L
Sbjct:   428 EM-SLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGL 483

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 3.6e-24, P = 3.6e-24
 Identities = 79/261 (30%), Positives = 126/261 (48%)

Query:   153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN 212
             + L+ M  R N +L      + +I  L + G ++ A   F  M+      ++  YN++I 
Sbjct:   249 ELLRKMEER-NIKLDAVK-YSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIG 306

Query:   213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN 272
               C  G ++    LL  M     +  P+V T+++LI S+ K G           ++ EA 
Sbjct:   307 GFCNAGRWDDGAKLLRDMIKR--KINPNVVTFSVLIDSFVKEG-----------KLREAE 353

Query:   273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
              L + M+ +G  PD + Y  LIDG CK   +++A ++ D M  KGC PN  T+N  I  Y
Sbjct:   354 ELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGY 413

Query:   333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR 392
                N ID  +E+ RKM +L   V  + +Y  +I   CE G++  A++   E+V     P 
Sbjct:   414 CKANRIDDGLELFRKM-SLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPN 472

Query:   393 EYTYKLVCDAL--NAAEEPSL 411
               TYK++ D L  N   E +L
Sbjct:   473 IVTYKILLDGLCDNGESEKAL 493

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174165 AT5G16640 [Arabidopsis thaliana (taxid:3702)]

 Score = 295 (108.9 bits), Expect = 6.4e-24, P = 6.4e-24
 Identities = 81/267 (30%), Positives = 134/267 (50%)

Query:   144 RGNNVKGLWDFLKDMSRRGNG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
             +   V    D L  M + G G ++VT +S   LI  L   G  ++A      M +    P
Sbjct:   198 KSKQVDNALDLLNRMEKDGIGPDVVTYNS---LISGLCSSGRWSDATRMVSCMTKREIYP 254

Query:   203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
             DV+ +N +I+A  + G  ++A    E+M        PD+ TY++LI   C Y        
Sbjct:   255 DVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL--DPDIVTYSLLIYGLCMYS------- 305

Query:   263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR 322
                 R+ EA  +F  M+ KG  PDVV Y+ LI+G CK+ ++E  ++LF +M+++G + N 
Sbjct:   306 ----RLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNT 361

Query:   323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFL 381
             VTY   I+ Y    +++ A E+ R+M  +  GV P   +Y  ++H LC+ G++ +A   L
Sbjct:   362 VTYTILIQGYCRAGKLNVAEEIFRRM--VFCGVHPNIITYNVLLHGLCDNGKIEKALVIL 419

Query:   382 AELVDGGSVPREYTYKLVCDALNAAEE 408
             A++   G      TY ++   +  A E
Sbjct:   420 ADMQKNGMDADIVTYNIIIRGMCKAGE 446

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q1PFC5	PP130_ARATH	No assigned EC number	0.6569	0.9756	0.9606	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	451
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-16
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-12
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	7e-10
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	6e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-08
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-07
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-07
pfam01535	31	pfam01535, PPR, PPR repeat	1e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	7e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 73.6 bits (182), Expect = 1e-16
 Identities = 25/46 (54%), Positives = 32/46 (69%)

Query: 285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
           PDVV YN LIDG CK  ++E AL+LF++M K+G  PN  TY+  I 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 79.9 bits (197), Expect = 7e-16
 Identities = 64/247 (25%), Positives = 109/247 (44%), Gaps = 25/247 (10%)

Query: 175 LIKVLGEEGLVNEALATFYRMK--QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL 232
           LI   G+ G V+ A      MK       PD      ++ A    G  ++A+ + + +  
Sbjct: 548 LISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE-ANHLFRLMLFKGFVPDVVAYN 291
              +  P+VYT  I ++S  + G             W+ A  ++  M  KG  PD V ++
Sbjct: 608 YNIKGTPEVYT--IAVNSCSQKGD------------WDFALSIYDDMKKKGVKPDEVFFS 653

Query: 292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN- 350
            L+D       +++A E+  D  K+G     V+Y+S +   S      KA+E+   +++ 
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI 713

Query: 351 -LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
            L    PT S+   +I ALCE  ++ +A + L+E+   G  P   TY ++   L A+E  
Sbjct: 714 KLR---PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL---LVASERK 767

Query: 410 SLLDDGL 416
              D GL
Sbjct: 768 DDADVGL 774

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 68.2 bits (168), Expect = 7e-15
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK 253
           PDV  YN +I+  C+ G   +A  L  +M+       P+VYTY+ILI   CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMK--KRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 61.3 bits (150), Expect = 2e-12
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 11/61 (18%)

Query: 239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC 298
           PDV TY  LI  YCK           + ++ EA  LF  M  +G  P+V  Y+ LIDG C
Sbjct: 1   PDVVTYNTLIDGYCK-----------KGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

Query: 299 K 299
           K
Sbjct: 50  K 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 64.5 bits (157), Expect = 5e-11
 Identities = 60/248 (24%), Positives = 103/248 (41%), Gaps = 33/248 (13%)

Query: 142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE----ALATFYRMKQ 197
           F  G  ++GL  F        + +L+T +SV    ++LG+E L  E     + T + +  
Sbjct: 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-- 321

Query: 198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ 257
                DV   N +I     +G++ +A  +  +ME        D  ++T +IS Y K G+ 
Sbjct: 322 -----DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK------DAVSWTAMISGYEKNGLP 370

Query: 258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG 317
               KA+          + LM      PD +    ++  C     ++  ++L +   +KG
Sbjct: 371 D---KAL--------ETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKG 419

Query: 318 CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA 377
            I   V  N+ I  YS    IDKA+E+   +   +       S+T II  L    R  EA
Sbjct: 420 LISYVVVANALIEMYSKCKCIDKALEVFHNIPEKD-----VISWTSIIAGLRLNNRCFEA 474

Query: 378 RDFLAELV 385
             F  +++
Sbjct: 475 LIFFRQML 482

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 52/230 (22%), Positives = 101/230 (43%), Gaps = 23/230 (10%)

Query: 153 DFLKDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV 210
           D L+DM +RG   L+    +      K   ++  V EA    +R  +    P +  +N++
Sbjct: 391 DLLEDMEKRG---LLDMDKIYHAKFFKACKKQRAVKEA----FRFAKLIRNPTLSTFNML 443

Query: 211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE 270
           ++      + + A  +L  ++  G +   D   YT LIS+  K G           ++  
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLK--ADCKLYTTLISTCAKSG-----------KVDA 490

Query: 271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR 330
              +F  M+  G   +V  +  LIDGC +  ++ +A   +  M  K   P+RV +N+ I 
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550

Query: 331 YYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARD 379
                  +D+A +++ +M+   H + P   +   ++ A   AG+V  A++
Sbjct: 551 ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 58.7 bits (142), Expect = 3e-09
 Identities = 49/200 (24%), Positives = 88/200 (44%), Gaps = 19/200 (9%)

Query: 183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY 242
           G   EAL  +Y M+      D + ++++I    R+     A+     +   GF  P D+ 
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF--PLDIV 361

Query: 243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR 302
             T L+  Y K+G           R+ +A ++F  M  K    +++++N LI G     R
Sbjct: 362 ANTALVDLYSKWG-----------RMEDARNVFDRMPRK----NLISWNALIAGYGNHGR 406

Query: 303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSY 361
             +A+E+F+ M  +G  PN VT+ + +         ++  E+ + M   NH + P +  Y
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE-NHRIKPRAMHY 465

Query: 362 TPIIHALCEAGRVLEARDFL 381
             +I  L   G + EA   +
Sbjct: 466 ACMIELLGREGLLDEAYAMI 485

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 50.8 bits (123), Expect = 6e-09
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDM 313
           KG  PDVV YN LIDG C+  R++ A+EL D+M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.9 bits (123), Expect = 8e-09
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR 216
             LI    ++G V EAL  F  MK+   +P+VY Y+++I+ LC+
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 55.3 bits (133), Expect = 5e-08
 Identities = 42/193 (21%), Positives = 71/193 (36%), Gaps = 35/193 (18%)

Query: 149 KGLWDF----LKDMSRRGNGELVTTSSV--TCLIKVLGEEGLVNEALATFYRMKQFRCRP 202
           KG WDF      DM ++G    V    V  + L+ V G  G +++A       ++   + 
Sbjct: 627 KGDWDFALSIYDDMKKKG----VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682

Query: 203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK 262
              +Y+ ++ A     N+ KA  L E ++    R  P V T   LI++ C          
Sbjct: 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR--PTVSTMNALITALC---------- 730

Query: 263 AIRRRIWEANHLFRLMLF------KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK 316
                  E N L + +         G  P+ + Y+ L+    +    +  L+L     + 
Sbjct: 731 -------EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783

Query: 317 GCIPNRVTYNSFI 329
           G  PN V      
Sbjct: 784 GIKPNLVMCRCIT 796

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 48.6 bits (117), Expect = 7e-08
 Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC 369
           P+ VTYN+ I  Y    ++++A+++  +M+      P   +Y+ +I  LC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGI-KPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.1 bits (116), Expect = 7e-08
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 200 CRPDVYAYNVVINALCRVGNFNKARFLLEQME 231
            +PDV  YN +I+ LCR G  ++A  LL++ME
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN 321
           V YN LIDG CK  R+E ALELF +M ++G  P+
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 51/226 (22%), Positives = 89/226 (39%), Gaps = 40/226 (17%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           +++AL  F+ +       DV ++  +I  L       +A     QM L      P+  T 
Sbjct: 440 IDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL---TLKPNSVTL 492

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRL-MLFKGFVP------------------ 285
              +S+  + G    C K I        H+ R  + F GF+P                  
Sbjct: 493 IAALSACARIGALM-CGKEIHA------HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWN 545

Query: 286 -------DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI 338
                  DVV++N L+ G     +   A+ELF+ M + G  P+ VT+ S +   S    +
Sbjct: 546 QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605

Query: 339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL 384
            + +E    M+      P    Y  ++  L  AG++ EA +F+ ++
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651

Length = 857

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 17/31 (54%), Positives = 21/31 (67%)

Query: 288 VAYNCLIDGCCKTYRIERALELFDDMNKKGC 318
           V YN LI G CK  ++E ALELF +M +KG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.7 bits (102), Expect = 5e-06
 Identities = 14/42 (33%), Positives = 16/42 (38%), Gaps = 11/42 (26%)

Query: 237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM 278
             PDV TY  LI   C+ G           R+ EA  L   M
Sbjct: 3   LKPDVVTYNTLIDGLCRAG-----------RVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY 396
           P   +Y  +I   C+ G+V EA     E+   G  P  YTY
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTY 41

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 42.1 bits (99), Expect = 5e-04
 Identities = 47/204 (23%), Positives = 74/204 (36%), Gaps = 23/204 (11%)

Query: 141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC 200
           +F R   +   W     M  R         S   L+    + G  +EAL  ++RM     
Sbjct: 130 MFVRFGELVHAWYVFGKMPER------DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGV 183

Query: 201 RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC 260
           RPDVY +  V+     + +  + R +   +   GF    DV     LI+ Y K G     
Sbjct: 184 RPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV--VNALITMYVKCGDVVSA 241

Query: 261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP 320
           R            +F  M       D +++N +I G  +       LELF  M +    P
Sbjct: 242 RL-----------VFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286

Query: 321 NRVTYNSFIRYYSVVNEIDKAIEM 344
           + +T  S I    ++ +     EM
Sbjct: 287 DLMTITSVISACELLGDERLGREM 310

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV 241
             YN +I+ LC+ G   +A  L ++M+       PDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMK--ERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.2 bits (85), Expect = 9e-04
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 316 KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ 349
           KG  P+ VTYN+ I        +D+A+E++ +M+
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.001
 Identities = 9/28 (32%), Positives = 18/28 (64%)

Query: 204 VYAYNVVINALCRVGNFNKARFLLEQME 231
           +  YN ++ AL + G+ + A  +LE+M+
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMK 28

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 9/31 (29%), Positives = 16/31 (51%)

Query: 205 YAYNVVINALCRVGNFNKARFLLEQMELPGF 235
             YN +I+  C+ G   +A  L ++M+  G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 8/92 (8%)

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-GNFNKARFLLEQMEL 232
           C+I++LG EGL++EA A   R   F  +P V  +  ++ A CR+  N    R   E++  
Sbjct: 467 CMIELLGREGLLDEAYA-MIRRAPF--KPTVNMWAALLTA-CRIHKNLELGRLAAEKLYG 522

Query: 233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAI 264
            G   P  +  Y +L++ Y   G Q    K +
Sbjct: 523 MG---PEKLNNYVVLLNLYNSSGRQAEAAKVV 551

Length = 697

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 11/46 (23%)

Query: 242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV 287
            TY  LI   CK G      +A+         LF+ M  +G  PDV
Sbjct: 1   VTYNTLIDGLCKAGR---VEEALE--------LFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	451
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.82
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.73
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.69
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.69
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.61
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.59
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.58
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.55
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.52
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.5
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.5
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.49
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.49
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.47
PRK14574	822	hmsH outer membrane protein; Provisional	99.44
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.43
PF13041	50	PPR_2: PPR repeat family	99.41
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.41
KOG1126	638	consensus DNA-binding cell division cycle control	99.41
PF13041	50	PPR_2: PPR repeat family	99.4
PRK14574	822	hmsH outer membrane protein; Provisional	99.38
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.38
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.36
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.29
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.29
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.27
PRK12370	553	invasion protein regulator; Provisional	99.26
KOG2076	895	consensus RNA polymerase III transcription factor	99.25
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.24
PRK12370	553	invasion protein regulator; Provisional	99.23
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.22
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.21
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.19
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.17
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.14
KOG2003	840	consensus TPR repeat-containing protein [General f	99.13
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.11
KOG1126	638	consensus DNA-binding cell division cycle control	99.11
KOG2076	895	consensus RNA polymerase III transcription factor	99.09
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.99
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.99
PRK11189	296	lipoprotein NlpI; Provisional	98.93
PRK11189	296	lipoprotein NlpI; Provisional	98.91
KOG1129	478	consensus TPR repeat-containing protein [General f	98.9
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.89
KOG2003	840	consensus TPR repeat-containing protein [General f	98.88
PF12854	34	PPR_1: PPR repeat	98.87
PF12854	34	PPR_1: PPR repeat	98.83
KOG1129	478	consensus TPR repeat-containing protein [General f	98.79
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.79
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.77
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.77
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.77
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.76
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.74
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.74
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.73
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.68
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.68
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.64
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.59
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.52
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.51
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.43
PRK04841	903	transcriptional regulator MalT; Provisional	98.38
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.38
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.38
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.38
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.35
PLN02789	320	farnesyltranstransferase	98.34
KOG1125	579	consensus TPR repeat-containing protein [General f	98.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.27
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.26
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.23
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.21
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.21
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.19
PRK04841	903	transcriptional regulator MalT; Provisional	98.18
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.18
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.17
PLN02789	320	farnesyltranstransferase	98.17
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.15
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.13
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.12
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.12
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.1
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.08
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.08
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.08
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.06
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.04
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.03
PRK15359	144	type III secretion system chaperone protein SscB;	98.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.02
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.01
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.01
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.99
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.98
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.98
PRK15359	144	type III secretion system chaperone protein SscB;	97.98
KOG1125	579	consensus TPR repeat-containing protein [General f	97.98
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.97
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.96
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.93
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.92
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.9
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.89
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.87
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.87
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.86
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.86
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.83
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.8
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.79
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.79
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.78
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.77
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.77
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.76
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.73
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.71
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.66
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.66
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.65
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.63
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.58
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.55
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.55
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.55
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.51
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.48
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.46
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.46
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.45
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.42
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.36
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.32
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.3
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.3
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.23
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.17
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.16
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.14
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.13
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.11
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.11
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.09
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.09
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.03
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.02
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.98
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.94
PF12688	120	TPR_5: Tetratrico peptide repeat	96.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.79
PF12688	120	TPR_5: Tetratrico peptide repeat	96.73
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.71
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.68
PRK10803	263	tol-pal system protein YbgF; Provisional	96.62
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.61
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.59
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	96.58
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.56
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.42
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.4
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.38
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.38
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.36
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.21
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.16
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.12
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.11
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.09
PRK10803	263	tol-pal system protein YbgF; Provisional	96.0
KOG0553	304	consensus TPR repeat-containing protein [General f	95.95
KOG1585	308	consensus Protein required for fusion of vesicles	95.92
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.87
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.8
KOG3941	406	consensus Intermediate in Toll signal transduction	95.8
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.78
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.76
PF13371	73	TPR_9: Tetratricopeptide repeat	95.73
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.73
KOG3941	406	consensus Intermediate in Toll signal transduction	95.72
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.7
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	95.57
PF13371	73	TPR_9: Tetratricopeptide repeat	95.47
KOG0553	304	consensus TPR repeat-containing protein [General f	95.47
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.42
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.37
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.34
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.32
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.17
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.14
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.96
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.84
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.78
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.63
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	94.58
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.57
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.55
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.52
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	94.44
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.33
PF13512	142	TPR_18: Tetratricopeptide repeat	94.25
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.18
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.78
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.74
KOG4555	175	consensus TPR repeat-containing protein [Function	93.65
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.62
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.61
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.37
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.26
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.25
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.15
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.98
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.93
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.29
smart00299	140	CLH Clathrin heavy chain repeat homology.	92.19
PRK11906	458	transcriptional regulator; Provisional	92.03
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	91.88
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	91.78
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.77
PRK11906	458	transcriptional regulator; Provisional	91.63
PRK15331	165	chaperone protein SicA; Provisional	91.53
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	91.51
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.39
KOG4570	418	consensus Uncharacterized conserved protein [Funct	91.39
PF13762	145	MNE1: Mitochondrial splicing apparatus component	91.12
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	90.94
PRK15331	165	chaperone protein SicA; Provisional	90.78
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.01
COG4105	254	ComL DNA uptake lipoprotein [General function pred	89.96
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.86
PF13512	142	TPR_18: Tetratricopeptide repeat	89.85
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	89.61
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	89.6
KOG4555	175	consensus TPR repeat-containing protein [Function	89.47
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.4
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.2
PF13428	44	TPR_14: Tetratricopeptide repeat	88.9
PF13428	44	TPR_14: Tetratricopeptide repeat	88.76
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.64
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	88.35
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	88.29
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.18
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	87.13
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	87.12
COG1747	711	Uncharacterized N-terminal domain of the transcrip	86.52
COG3118	304	Thioredoxin domain-containing protein [Posttransla	86.37
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	85.86
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.79
COG3118	304	Thioredoxin domain-containing protein [Posttransla	85.51
KOG2610	491	consensus Uncharacterized conserved protein [Funct	85.19
COG4105	254	ComL DNA uptake lipoprotein [General function pred	84.85
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	84.74
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	84.64
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.7
KOG2041	1189	consensus WD40 repeat protein [General function pr	83.19
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.01
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.85
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	81.63
PF13929	292	mRNA_stabil: mRNA stabilisation	81.52
KOG1550	552	consensus Extracellular protein SEL-1 and related	81.28
KOG1941	518	consensus Acetylcholine receptor-associated protei	80.63
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	80.28
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.12
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	80.12

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4.7e-51  Score=424.37  Aligned_cols=339  Identities=20%  Similarity=0.293  Sum_probs=264.9

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV  185 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~  185 (451)
                      +...+++++|.++|+.|.+. |+.||..+|+.||.+|++.|++++|.++|++|.+.|+.|  |..+|+.||.+|++.|++
T Consensus       447 ~~k~g~~e~A~~lf~~M~~~-Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~P--dvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        447 CASSQDIDGALRVLRLVQEA-GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEA--NVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCcCH
Confidence            55667788888888888865 888888888888888888888888888888888887665  778888888888888888


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010          186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR  265 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~  265 (451)
                      ++|.++|++|.+.|+.||..+||.+|.+|++.|++++|.++|++|...+..+.||..+|+++|.+|++.|+.+.|.+.+.
T Consensus       524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~  603 (1060)
T PLN03218        524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ  603 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888876322234888888888888888886665555432


Q ss_pred             ------------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013010          266 ------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN  321 (451)
Q Consensus       266 ------------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  321 (451)
                                              +++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.+++++|.+.|+.||
T Consensus       604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd  683 (1060)
T PLN03218        604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG  683 (1060)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence                                    36677777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013010          322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD  401 (451)
Q Consensus       322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~  401 (451)
                      ..+|+.||.+|++.|++++|.++|++|.+.+. .||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~  762 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKL-RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV  762 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            77788888888888888888888887777776 77888888888888888888888888888877788888888888888


Q ss_pred             HHHhcCCCchHHHHHHHHHHhchHHHHHHhhchhcccchhhhhcccCC
Q 013010          402 ALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIMKHKELLKCGEI  449 (451)
Q Consensus       402 ~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~k~g~~  449 (451)
                      +|++.|+.+.|.+++.+|++.|+.|+......+.. +-.+.|.||+++
T Consensus       763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIg-lc~~~y~ka~~l  809 (1060)
T PLN03218        763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITG-LCLRRFEKACAL  809 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHHHHHHHhhh
Confidence            88888888888888888887777776444333321 212346677654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.1e-51  Score=423.03  Aligned_cols=293  Identities=18%  Similarity=0.224  Sum_probs=214.7

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV  185 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~  185 (451)
                      +...|++++|.++|+.|.+. |+.||..+|+.||.+|++.|++++|.++|+.|.+.|+.|  |..+|+.||.+|++.|++
T Consensus       482 y~k~G~vd~A~~vf~eM~~~-Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~P--D~vTYnsLI~a~~k~G~~  558 (1060)
T PLN03218        482 CAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKP--DRVVFNALISACGQSGAV  558 (1060)
T ss_pred             HHhCcCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCH
Confidence            44444555555555555543 555555555555555555555555555555555555443  444555555555555555


Q ss_pred             HHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010          186 NEALATFYRMKQ--FRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA  263 (451)
Q Consensus       186 ~~A~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~  263 (451)
                      ++|.++|++|..  .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.  |+..+|+++|.+|++.|+.+.|.+.
T Consensus       559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~--p~~~tynsLI~ay~k~G~~deAl~l  636 (1060)
T PLN03218        559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK--GTPEVYTIAVNSCSQKGDWDFALSI  636 (1060)
T ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC--CChHHHHHHHHHHHhcCCHHHHHHH
Confidence            555555555543  344555555555555555555555555555555555532  5555555555555555554444443


Q ss_pred             HH------------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 013010          264 IR------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI  319 (451)
Q Consensus       264 ~~------------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  319 (451)
                      +.                        +++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.
T Consensus       637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~  716 (1060)
T PLN03218        637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLR  716 (1060)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            32                        289999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010          320 PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV  399 (451)
Q Consensus       320 p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  399 (451)
                      ||..+||.||.+|++.|++++|.++|++|...|. .||..+|+.+|.+|++.|++++|.+++.+|.+.|+.||..+|++|
T Consensus       717 PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi-~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL  795 (1060)
T PLN03218        717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGL-CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI  795 (1060)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            9999999999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 013010          400 CDALN  404 (451)
Q Consensus       400 i~~~~  404 (451)
                      +..|.
T Consensus       796 Iglc~  800 (1060)
T PLN03218        796 TGLCL  800 (1060)
T ss_pred             HHHHH
Confidence            97654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9.8e-47  Score=388.56  Aligned_cols=314  Identities=14%  Similarity=0.164  Sum_probs=245.3

Q ss_pred             CCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010          103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE  182 (451)
Q Consensus       103 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~  182 (451)
                      .+.|...|++++|.++|+.|.     .||..+||.++.+|++.|++++|.++|++|.+.|..|  +..+|+.++.+|++.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p--~~~t~~~ll~a~~~~  237 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA--EPRTFVVMLRASAGL  237 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC--ChhhHHHHHHHHhcC
Confidence            344555555555555555553     2455555555555555555555555555555555433  445555555555555


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH
Q 013010          183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK  262 (451)
Q Consensus       183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~  262 (451)
                      |..+.+.+++..+.+.|+.||..+||+||++|++.|++++|.++|++|..      +|..+||+||.+|++.|       
T Consensus       238 ~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g-------  304 (697)
T PLN03081        238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHG-------  304 (697)
T ss_pred             CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCC-------
Confidence            55555555555555666666666777777777777777778777777742      57777888888888877       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010          263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~  342 (451)
                          ++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++..|.+.|+.||..+|++||.+|++.|++++|.
T Consensus       305 ----~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~  380 (697)
T PLN03081        305 ----YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR  380 (697)
T ss_pred             ----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHH
Confidence                9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH-
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR-  421 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~-  421 (451)
                      ++|++|.     .||..+||.||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|..+++.++++.|.+ 
T Consensus       381 ~vf~~m~-----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~  455 (697)
T PLN03081        381 NVFDRMP-----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN  455 (697)
T ss_pred             HHHHhCC-----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            9999985     4788999999999999999999999999999999999999999999999999999999999999985 


Q ss_pred             hchHHHHHHhhchhcccchhhhhcccCCC
Q 013010          422 DGIEYRFRQVMKVKPIMKHKELLKCGEID  450 (451)
Q Consensus       422 ~g~~~~~~~~~~~~~~~~~~~~~k~g~~~  450 (451)
                      .|+.|+......   .+  +.|.++|++|
T Consensus       456 ~g~~p~~~~y~~---li--~~l~r~G~~~  479 (697)
T PLN03081        456 HRIKPRAMHYAC---MI--ELLGREGLLD  479 (697)
T ss_pred             cCCCCCccchHh---HH--HHHHhcCCHH
Confidence            588775322111   11  4566666554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.3e-44  Score=372.84  Aligned_cols=293  Identities=18%  Similarity=0.179  Sum_probs=158.0

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      +.+...|++++|+++|++|.+. |+.|+..+|+.++.++++.|+.+.+.+++..+.+.|..+  +..+||+||.+|++.|
T Consensus       197 ~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~--d~~~~n~Li~~y~k~g  273 (697)
T PLN03081        197 GGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG--DTFVSCALIDMYSKCG  273 (697)
T ss_pred             HHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc--cceeHHHHHHHHHHCC
Confidence            4467778899999999999865 777776666655555555555555555555555554433  4444555555555555


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA  263 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~  263 (451)
                      ++++|.++|++|.+    +|..+||++|.+|++.|++++|.++|++|.+.|+.  ||..||++++.+|++.|        
T Consensus       274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~--pd~~t~~~ll~a~~~~g--------  339 (697)
T PLN03081        274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS--IDQFTFSIMIRIFSRLA--------  339 (697)
T ss_pred             CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcc--------
Confidence            55555555555542    34555555555555555555555555555555532  55555555555555555        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCC-------------------------------CHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 013010          264 IRRRIWEANHLFRLMLFKGFVP-------------------------------DVVAYNCLIDGCCKTYRIERALELFDD  312 (451)
Q Consensus       264 ~~~~~~~a~~~~~~m~~~~~~~-------------------------------~~~~~~~li~~~~~~g~~~~a~~~~~~  312 (451)
                         ++++|.+++..|.+.|+.|                               |..+||+||.+|++.|+.++|.++|++
T Consensus       340 ---~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~  416 (697)
T PLN03081        340 ---LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER  416 (697)
T ss_pred             ---chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence               4444444444444444444                               445555555555555555555555555


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 013010          313 MNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL-NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP  391 (451)
Q Consensus       313 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  391 (451)
                      |.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.+. +. .|+..+|+.++++|++.|++++|.+++++|   ++.|
T Consensus       417 M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~-~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p  492 (697)
T PLN03081        417 MIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI-KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKP  492 (697)
T ss_pred             HHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC-CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCC
Confidence            555555555555555555555555555555555555432 22 455555555555555555555555544433   3445


Q ss_pred             CHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          392 REYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       392 ~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +..+|++|+.+|+..|+.+.+.++++++.
T Consensus       493 ~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~  521 (697)
T PLN03081        493 TVNMWAALLTACRIHKNLELGRLAAEKLY  521 (697)
T ss_pred             CHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            55555555555555555555544444443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.4e-44  Score=381.14  Aligned_cols=340  Identities=20%  Similarity=0.230  Sum_probs=287.6

Q ss_pred             hhhhhhhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhH----------------------------------
Q 013010           90 IANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTC----------------------------------  135 (451)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~----------------------------------  135 (451)
                      ..|++++.+       +...+.+++|+++|+.|... |+.||..||                                  
T Consensus       153 ~~~n~li~~-------~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  224 (857)
T PLN03077        153 FSWNVLVGG-------YAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV  224 (857)
T ss_pred             eEHHHHHHH-------HHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccch
Confidence            455555544       66778899999999999865 777766555                                  


Q ss_pred             -HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 013010          136 -KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL  214 (451)
Q Consensus       136 -~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  214 (451)
                       |+|+.+|++.|+++.|.++|++|..      ++..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|
T Consensus       225 ~n~Li~~y~k~g~~~~A~~lf~~m~~------~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~  298 (857)
T PLN03077        225 VNALITMYVKCGDVVSARLVFDRMPR------RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC  298 (857)
T ss_pred             HhHHHHHHhcCCCHHHHHHHHhcCCC------CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH
Confidence             5666667777788888888877753      366789999999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH--------------------HHHHHHHHH
Q 013010          215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--------------------RRIWEANHL  274 (451)
Q Consensus       215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~--------------------~~~~~a~~~  274 (451)
                      ++.|+.+.|.+++..|.+.|+.  ||..+|++||.+|++.|+.+.+.+.+.                    +++++|.++
T Consensus       299 ~~~g~~~~a~~l~~~~~~~g~~--~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~l  376 (857)
T PLN03077        299 ELLGDERLGREMHGYVVKTGFA--VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET  376 (857)
T ss_pred             HhcCChHHHHHHHHHHHHhCCc--cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999999999999965  999999999999999999888887664                    578999999


Q ss_pred             HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-
Q 013010          275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH-  353 (451)
Q Consensus       275 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~-  353 (451)
                      |++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.+. 
T Consensus       377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v  456 (857)
T PLN03077        377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI  456 (857)
T ss_pred             HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence            9999999999999999999999999999999999999999999999999999999999988888888888887755321 


Q ss_pred             --------------------------------------------------------------------------------
Q 013010          354 --------------------------------------------------------------------------------  353 (451)
Q Consensus       354 --------------------------------------------------------------------------------  353 (451)
                                                                                                      
T Consensus       457 s~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k  536 (857)
T PLN03077        457 SWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVR  536 (857)
T ss_pred             eHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHH
Confidence                                                                                            


Q ss_pred             -------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          354 -------------GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       354 -------------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                                   ..||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|+.+++.++++.|.
T Consensus       537 ~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~  616 (857)
T PLN03077        537 CGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME  616 (857)
T ss_pred             cCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence                         0356677888999999999999999999999999999999999999999999999999999999999


Q ss_pred             -HhchHHHHHHhhchhcccchhhhhcccCCC
Q 013010          421 -RDGIEYRFRQVMKVKPIMKHKELLKCGEID  450 (451)
Q Consensus       421 -~~g~~~~~~~~~~~~~~~~~~~~~k~g~~~  450 (451)
                       +.|+.|+......    | -+.|.++|+++
T Consensus       617 ~~~gi~P~~~~y~~----l-v~~l~r~G~~~  642 (857)
T PLN03077        617 EKYSITPNLKHYAC----V-VDLLGRAGKLT  642 (857)
T ss_pred             HHhCCCCchHHHHH----H-HHHHHhCCCHH
Confidence             7898886433222    1 25677777765

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=5.9e-43  Score=368.74  Aligned_cols=303  Identities=20%  Similarity=0.210  Sum_probs=244.1

Q ss_pred             hhhhhhhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccH
Q 013010           90 IANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT  169 (451)
Q Consensus        90 ~~~~~l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  169 (451)
                      +.|++++.+       |...+.+++|+++|+.|.+. |+.||..+|+.++.+|++.|+++.|.+++..|.+.|..|  +.
T Consensus       254 ~s~n~li~~-------~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~--d~  323 (857)
T PLN03077        254 ISWNAMISG-------YFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV--DV  323 (857)
T ss_pred             chhHHHHHH-------HHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc--ch
Confidence            455565555       66677788999999999876 888998899988888888888888888888888888765  77


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010          170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS  249 (451)
Q Consensus       170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~  249 (451)
                      .+||+||.+|++.|++++|.++|++|..    ||..+||++|.+|++.|++++|.++|++|.+.|+.  ||..||++++.
T Consensus       324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~--Pd~~t~~~ll~  397 (857)
T PLN03077        324 SVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS--PDEITIASVLS  397 (857)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CCceeHHHHHH
Confidence            7888888888888888888888888864    67788888888888888888888888888888854  88888888888


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------------
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK-------------  316 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------  316 (451)
                      +|++.|           ++++|.++++.|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+.             
T Consensus       398 a~~~~g-----------~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~  466 (857)
T PLN03077        398 ACACLG-----------DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR  466 (857)
T ss_pred             HHhccc-----------hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH
Confidence            888888           55555555555555555555555555555555555555555544444321             


Q ss_pred             -----------------CC-------------------------------------------------------------
Q 013010          317 -----------------GC-------------------------------------------------------------  318 (451)
Q Consensus       317 -----------------g~-------------------------------------------------------------  318 (451)
                                       ++                                                             
T Consensus       467 ~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~  546 (857)
T PLN03077        467 LNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ  546 (857)
T ss_pred             HCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH
Confidence                             12                                                             


Q ss_pred             ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-hCCCCCCH
Q 013010          319 ----IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-DGGSVPRE  393 (451)
Q Consensus       319 ----~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~  393 (451)
                          .||..+||++|.+|++.|+.++|.++|++|.+.|. .||..||+.+|.+|++.|++++|.++|++|. +.|+.|+.
T Consensus       547 f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~-~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~  625 (857)
T PLN03077        547 FNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL  625 (857)
T ss_pred             HHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence                45667788889999999999999999999999998 9999999999999999999999999999999 78999999


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          394 YTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       394 ~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      .+|+.++.+|+++|++++|.+.+++|-
T Consensus       626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~  652 (857)
T PLN03077        626 KHYACVVDLLGRAGKLTEAYNFINKMP  652 (857)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence            999999999999999999999999883

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=7.5e-20  Score=176.89  Aligned_cols=300  Identities=15%  Similarity=0.079  Sum_probs=248.1

Q ss_pred             hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCH
Q 013010          107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLV  185 (451)
Q Consensus       107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~  185 (451)
                      ...+++++|+..|+.+.+.  .+.+..++..+...+...|++++|..+++.+...+..+ ......+..+...|...|++
T Consensus        46 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            3456789999999999864  33456789999999999999999999999998864221 11235688899999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHhcCCchhhhH
Q 013010          186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCKYGMQTGCRK  262 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~---~~~~~~li~~~~~~g~~~~~~~  262 (451)
                      ++|..+|+++.+.. +.+..+++.++..+.+.|++++|.+.++.+...+.. ++.   ...+..+...+.+.|       
T Consensus       124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~-------  194 (389)
T PRK11788        124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQALARG-------  194 (389)
T ss_pred             HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHHHhCC-------
Confidence            99999999998753 456889999999999999999999999999876522 111   224566777888888       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010          263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~  342 (451)
                          ++++|...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|...|++++|.
T Consensus       195 ----~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~  269 (389)
T PRK11788        195 ----DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGL  269 (389)
T ss_pred             ----CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHH
Confidence                8999999999998753 33456788888999999999999999999987642223567889999999999999999


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCCchHHHHHHHH
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA---AEEPSLLDDGLRKR  419 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~a~~~~~~~  419 (451)
                      ..++++.+..   |+...+..+...+.+.|++++|..+++++.+.  .|+..+++.++..+..   .|+.+.+...++++
T Consensus       270 ~~l~~~~~~~---p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~  344 (389)
T PRK11788        270 EFLRRALEEY---PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDL  344 (389)
T ss_pred             HHHHHHHHhC---CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHH
Confidence            9999998863   66677788999999999999999999998875  6899999999988875   55888899999999


Q ss_pred             HHhchHHH
Q 013010          420 IRDGIEYR  427 (451)
Q Consensus       420 ~~~g~~~~  427 (451)
                      .+.++.+.
T Consensus       345 ~~~~~~~~  352 (389)
T PRK11788        345 VGEQLKRK  352 (389)
T ss_pred             HHHHHhCC
Confidence            99888765

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.82  E-value=4.1e-17  Score=174.51  Aligned_cols=296  Identities=11%  Similarity=0.018  Sum_probs=226.8

Q ss_pred             CCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010          102 YRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE  181 (451)
Q Consensus       102 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~  181 (451)
                      .+..+...+++++|+.+++.+.+.  .+.+...|..+...+.+.|++++|...++.+.+...   .+...+..+..++..
T Consensus       573 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~  647 (899)
T TIGR02917       573 LAQYYLGKGQLKKALAILNEAADA--APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP---DSALALLLLADAYAV  647 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHH
Confidence            345567788899999999998753  456778899999999999999999999999988752   255678889999999


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR  261 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~  261 (451)
                      .|++++|..+|+++.+.. +.+..++..+...+...|++++|.++++.+....   +.+...+..+...+.+.|      
T Consensus       648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g------  717 (899)
T TIGR02917       648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH---PKAALGFELEGDLYLRQK------  717 (899)
T ss_pred             cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---cCChHHHHHHHHHHHHCC------
Confidence            999999999999998753 3457888999999999999999999999998875   357778888888999998      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010          262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A  341 (451)
                           ++++|...|+.+...+  |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|+.++|
T Consensus       718 -----~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A  789 (899)
T TIGR02917       718 -----DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKA  789 (899)
T ss_pred             -----CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHH
Confidence                 7778888887777653  444666667777777888888887777777653 33567777777777777888888


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      .++|+++.+..  +.+...++.+...+...|+ .+|..++++..+.. +-+..++..+...+...|++++|.+.++++++
T Consensus       790 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~  865 (899)
T TIGR02917       790 IKHYRTVVKKA--PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVN  865 (899)
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88887777765  5566777777777777777 66777777776542 12345566667777777777777777777776


Q ss_pred             hch
Q 013010          422 DGI  424 (451)
Q Consensus       422 ~g~  424 (451)
                      .+.
T Consensus       866 ~~~  868 (899)
T TIGR02917       866 IAP  868 (899)
T ss_pred             hCC
Confidence            544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.82  E-value=5.7e-17  Score=156.81  Aligned_cols=263  Identities=14%  Similarity=0.090  Sum_probs=220.0

Q ss_pred             HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHH
Q 013010          139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD---VYAYNVVINALC  215 (451)
Q Consensus       139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li~~~~  215 (451)
                      ...+...|++++|...|.++.+.+.   .+..++..+...+...|++++|..+++.+...+..++   ..++..+...|.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~  118 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP---ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL  118 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc---ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            4445678999999999999999753   3567899999999999999999999999988542222   356888899999


Q ss_pred             hcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC----HhhHH
Q 013010          216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD----VVAYN  291 (451)
Q Consensus       216 ~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~  291 (451)
                      +.|++++|..+|+++.+..   +++..+++.++..+.+.|           ++++|.+.++.+.+.+..++    ...+.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~---~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  184 (389)
T PRK11788        119 KAGLLDRAEELFLQLVDEG---DFAEGALQQLLEIYQQEK-----------DWQKAIDVAERLEKLGGDSLRVEIAHFYC  184 (389)
T ss_pred             HCCCHHHHHHHHHHHHcCC---cchHHHHHHHHHHHHHhc-----------hHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            9999999999999998764   367889999999999999           99999999999987643322    12456


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 013010          292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA  371 (451)
Q Consensus       292 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  371 (451)
                      .+...+.+.|++++|...++++.+.. +.+...+..+...|.+.|++++|.++++++.+.+. .....+++.+..+|++.
T Consensus       185 ~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        185 ELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP-EYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh-hhHHHHHHHHHHHHHHc
Confidence            67778889999999999999998763 22466788888999999999999999999987642 22246788999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          372 GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       372 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      |++++|...++++.+.  .|+...+..+...+.+.|+++.|...+.++++.
T Consensus       263 g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~  311 (389)
T PRK11788        263 GDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR  311 (389)
T ss_pred             CCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            9999999999999875  466677789999999999999999999998865

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.81  E-value=1.9e-16  Score=169.46  Aligned_cols=292  Identities=10%  Similarity=0.032  Sum_probs=248.2

Q ss_pred             CCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010          103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE  182 (451)
Q Consensus       103 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~  182 (451)
                      +..+...++.++|..+|+.+...  .+.+...+..++..+.+.|++++|..+++.+.+...   .+..+|..+..+|...
T Consensus       540 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~  614 (899)
T TIGR02917       540 AGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAP---DSPEAWLMLGRAQLAA  614 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHc
Confidence            34566678899999999998754  345667788899999999999999999999987652   3567899999999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH
Q 013010          183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK  262 (451)
Q Consensus       183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~  262 (451)
                      |++++|...|+.+.+.. +.+...+..+..++...|++++|..+|+++....   +.+..++..+...+...|       
T Consensus       615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~-------  683 (899)
T TIGR02917       615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK---PDNTEAQIGLAQLLLAAK-------  683 (899)
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHcC-------
Confidence            99999999999998754 3467788889999999999999999999988764   357889999999999999       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010          263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~  342 (451)
                          ++++|..+++.+.+.+ +.+...+..+...+...|++++|.+.|+.+...+  |+..++..+...+.+.|++++|.
T Consensus       684 ----~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~  756 (899)
T TIGR02917       684 ----RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV  756 (899)
T ss_pred             ----CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence                8999999999998764 4567788888899999999999999999988864  55678888899999999999999


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      +.++++.+..  +.+...+..+...|...|+.++|.++|+++.+.. +.+...+..+...+...|+ ..|...+++.++
T Consensus       757 ~~~~~~l~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~  831 (899)
T TIGR02917       757 KTLEAWLKTH--PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALK  831 (899)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence            9999998876  5678889999999999999999999999998764 4567889999999999999 778888888875

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=8.2e-15  Score=132.32  Aligned_cols=316  Identities=16%  Similarity=0.194  Sum_probs=240.3

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHc--cCC-hhHHHHHHHHHHHcCC-----------------CCCcc
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR--GNN-VKGLWDFLKDMSRRGN-----------------GELVT  168 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~--~g~-~~~a~~~~~~m~~~~~-----------------~~~~~  168 (451)
                      .+.++.+.-+|+.|... |++.+...-..|+...+-  +.+ .-.-++-|-.|...|.                 ..+.+
T Consensus       128 ~~EvKDs~ilY~~m~~e-~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT  206 (625)
T KOG4422|consen  128 SREVKDSCILYERMRSE-NVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT  206 (625)
T ss_pred             hcccchhHHHHHHHHhc-CCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence            45688999999999876 887777766666554332  222 2122333444433321                 11235


Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      ..+|.+||.++|+-...+.|.++|++-.....+.+..+||.+|.+-.-..    -.+++.+|......  ||..|+|+++
T Consensus       207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~--Pnl~TfNalL  280 (625)
T KOG4422|consen  207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT--PNLFTFNALL  280 (625)
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC--CchHhHHHHH
Confidence            67899999999999999999999999999888999999999998765333    38899999999865  9999999999


Q ss_pred             HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHH----hCCCCC---
Q 013010          249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER-ALELFDDMN----KKGCIP---  320 (451)
Q Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~----~~g~~p---  320 (451)
                      .+..+.|+...       ....|++++.+|++-|+.|...+|..+|..+++.++..+ |.-++.+..    ....+|   
T Consensus       281 ~c~akfg~F~~-------ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p  353 (625)
T KOG4422|consen  281 SCAAKFGKFED-------ARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP  353 (625)
T ss_pred             HHHHHhcchHH-------HHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence            99999996654       344788999999999999999999999999999888754 444444443    233333   


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCC---hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010          321 -NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VPT---SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE  393 (451)
Q Consensus       321 -~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  393 (451)
                       |..-|..-|..|.+..+.+.|..+-.-+......   .|+   ..-|..+..+.|.....+.-+..|+.|+-.-+-|+.
T Consensus       354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~  433 (625)
T KOG4422|consen  354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS  433 (625)
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence             5566778888888999999998887766543211   233   235678888899999999999999999988888999


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHHHhhchhccc
Q 013010          394 YTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMKVKPIM  438 (451)
Q Consensus       394 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~~~~~~  438 (451)
                      .+...+++|..-.|.++...+++..++.-|..-+-.-...++..|
T Consensus       434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L  478 (625)
T KOG4422|consen  434 QTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLL  478 (625)
T ss_pred             hhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999888554433333433333

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.69  E-value=1.7e-13  Score=139.93  Aligned_cols=298  Identities=11%  Similarity=-0.000  Sum_probs=209.5

Q ss_pred             hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010          107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN  186 (451)
Q Consensus       107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~  186 (451)
                      ...++.++|++.|+.+...  -+.+...+..+...+.+.|++++|...+++..+...   .+...+..+...+...|+.+
T Consensus        87 l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P---~~~~a~~~la~~l~~~g~~~  161 (656)
T PRK15174         87 LASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFS---GNSQIFALHLRTLVLMDKEL  161 (656)
T ss_pred             hhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHCCChH
Confidence            3467777888888777643  233455667777777788888888888887777642   24556777777788888888


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHH
Q 013010          187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR  266 (451)
Q Consensus       187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~  266 (451)
                      +|...++.+....- .+...+..+ ..+...|++++|...++.+.....  .++...+..+...+.+.|           
T Consensus       162 eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~--~~~~~~~~~l~~~l~~~g-----------  226 (656)
T PRK15174        162 QAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA--LERQESAGLAVDTLCAVG-----------  226 (656)
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC--CcchhHHHHHHHHHHHCC-----------
Confidence            88888877765432 222333232 346777888888888877765531  133444455566777777           


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER----ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~  342 (451)
                      ++++|...++...+.. +.+...+..+...+...|++++    |...|+...+.. +.+...+..+...+...|++++|.
T Consensus       227 ~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~  304 (656)
T PRK15174        227 KYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAI  304 (656)
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            8888888888887653 3356677778888888888885    788888887652 225678888888889999999999


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE-YTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      ..+++..+..  +.+...+..+...+.+.|++++|.+.++.+.+.+  |+. ..+..+..++...|+.++|...+++.++
T Consensus       305 ~~l~~al~l~--P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        305 PLLQQSLATH--PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999888765  4455667778888889999999999998888653  443 3344456778889999999999888875


Q ss_pred             hc---hHHHHHH
Q 013010          422 DG---IEYRFRQ  430 (451)
Q Consensus       422 ~g---~~~~~~~  430 (451)
                      ..   ....|.+
T Consensus       381 ~~P~~~~~~~~e  392 (656)
T PRK15174        381 ARASHLPQSFEE  392 (656)
T ss_pred             hChhhchhhHHH
Confidence            43   3444543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.69  E-value=3e-13  Score=138.11  Aligned_cols=288  Identities=12%  Similarity=0.009  Sum_probs=154.7

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      .|+.++|+.+++.....  .+-+...+..++.+....|++++|...++++......   +...+..+...+...|++++|
T Consensus        55 ~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~---~~~a~~~la~~l~~~g~~~~A  129 (656)
T PRK15174         55 KDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC---QPEDVLLVASVLLKSKQYATV  129 (656)
T ss_pred             cCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHH
Confidence            45556666666655543  2223334444445555566666666666666655421   334455556666666666666


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI  268 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~  268 (451)
                      ...|++..+.. +.+...+..+..++...|++++|...++.+....-   .+...+..+ ..+.+.|           ++
T Consensus       130 i~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P---~~~~a~~~~-~~l~~~g-----------~~  193 (656)
T PRK15174        130 ADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP---PRGDMIATC-LSFLNKS-----------RL  193 (656)
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC---CCHHHHHHH-HHHHHcC-----------CH
Confidence            66666665531 22345555556666666666666666665544331   122222222 2355555           56


Q ss_pred             HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHH
Q 013010          269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK----AIEM  344 (451)
Q Consensus       269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~----A~~~  344 (451)
                      ++|...++.+.+..-.++...+..+..++...|++++|.+.++...+.. +-+...+..+-..|...|++++    |...
T Consensus       194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~  272 (656)
T PRK15174        194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEH  272 (656)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence            6666666665544222233333444455566666666666666655542 1234555556666666666654    5666


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       345 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      |++..+..  +.+...+..+...+...|++++|...+++..+.. +-+...+..+..++.+.|+++.|.+.+.+..+
T Consensus       273 ~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~  346 (656)
T PRK15174        273 WRHALQFN--SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAR  346 (656)
T ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66665543  3344555666666666666666666666655532 11234455555666666666666666665553

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.64  E-value=1e-12  Score=119.04  Aligned_cols=288  Identities=17%  Similarity=0.215  Sum_probs=206.9

Q ss_pred             CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010          129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN  208 (451)
Q Consensus       129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  208 (451)
                      +.+..+|..||.++|+--..+.|.+++.+......+  ++..+||.+|.+-.-...    .+++.+|.+..+.||..|+|
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~k--v~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfN  277 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGK--VYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFN  277 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhhe--eeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHH
Confidence            447889999999999999999999999998877544  488899999977543322    68899999999999999999


Q ss_pred             HHHHHHHhcCChHH----HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH-------------------
Q 013010          209 VVINALCRVGNFNK----ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR-------------------  265 (451)
Q Consensus       209 ~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~-------------------  265 (451)
                      +++.+..+.|+++.    |.+++.+|++.|+.  |...+|..+|..+++.+++.+....+-                   
T Consensus       278 alL~c~akfg~F~~ar~aalqil~EmKeiGVe--PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d  355 (625)
T KOG4422|consen  278 ALLSCAAKFGKFEDARKAALQILGEMKEIGVE--PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTD  355 (625)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhCCC--cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCch
Confidence            99999999998765    67788999999976  999999999999999997744332211                   


Q ss_pred             --------------HHHHHHHHHHHHHHhc----CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010          266 --------------RRIWEANHLFRLMLFK----GFVPD---VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT  324 (451)
Q Consensus       266 --------------~~~~~a~~~~~~m~~~----~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  324 (451)
                                    .+.+.|.++..-....    -+.|+   .+-|..+....|.....+.-...|+.|.-.-+-|+..+
T Consensus       356 ~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~  435 (625)
T KOG4422|consen  356 NKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQT  435 (625)
T ss_pred             hHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchh
Confidence                          1222333332222110    01222   12245566666777777777777777776667777888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------------------------------------------------
Q 013010          325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNH---------------------------------------------------  353 (451)
Q Consensus       325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~---------------------------------------------------  353 (451)
                      ...++++..-.|.++-.-++|.++...|+                                                   
T Consensus       436 m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~  515 (625)
T KOG4422|consen  436 MIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQ  515 (625)
T ss_pred             HHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            88888888888888888888877777663                                                   


Q ss_pred             --CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhch
Q 013010          354 --GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS----VPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI  424 (451)
Q Consensus       354 --~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~  424 (451)
                        ........+.+.-.+.+.|..++|.+++..+.+.+-    .|......-++++-.+..+...|...+.-+...++
T Consensus       516 r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~  592 (625)
T KOG4422|consen  516 RAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL  592 (625)
T ss_pred             HhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence              012233455556667788888888888888865432    23444445666777777788878888887765443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.61  E-value=6.3e-12  Score=128.49  Aligned_cols=299  Identities=11%  Similarity=-0.022  Sum_probs=232.7

Q ss_pred             cCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH
Q 013010          101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG  180 (451)
Q Consensus       101 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~  180 (451)
                      ..++.+...+++++|+..|+....   ..|+...|..+..+|.+.|++++|.+.++...+.+.   .+...|..+..+|.
T Consensus       132 ~~G~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p---~~~~a~~~~a~a~~  205 (615)
T TIGR00990       132 EKGNKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP---DYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHH
Confidence            334556677889999999999874   567888899999999999999999999999988752   25668889999999


Q ss_pred             hcCCHHHHHHHHHHHhhCCC----------------------------CC----CHHHHHHH------------------
Q 013010          181 EEGLVNEALATFYRMKQFRC----------------------------RP----DVYAYNVV------------------  210 (451)
Q Consensus       181 ~~g~~~~A~~~~~~m~~~g~----------------------------~p----~~~~~~~l------------------  210 (451)
                      ..|++++|+.-|......+-                            .|    ........                  
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            99999999876654432110                            00    00000000                  


Q ss_pred             ---------HHHH------HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010          211 ---------INAL------CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF  275 (451)
Q Consensus       211 ---------i~~~------~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~  275 (451)
                               +..+      ...+++++|.+.|++....+...+.....|+.+...+...|           ++++|...+
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g-----------~~~eA~~~~  354 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG-----------KHLEALADL  354 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC-----------CHHHHHHHH
Confidence                     0000      11257889999999988765211235567888888888999           899999999


Q ss_pred             HHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 013010          276 RLMLFKGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG  354 (451)
Q Consensus       276 ~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  354 (451)
                      ++..+.  .|+ ...|..+...+...|++++|...|+...+.. +-+..+|..+...|...|++++|...|++..+..  
T Consensus       355 ~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~--  429 (615)
T TIGR00990       355 SKSIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD--  429 (615)
T ss_pred             HHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence            998865  344 5578888888999999999999999987763 2357889999999999999999999999999875  


Q ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          355 VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       355 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      +.+...+..+...+.+.|++++|...|++.++.. +-+...|..+..++...|+++.|.+.+++.+..
T Consensus       430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            4567788888899999999999999999988642 334778899999999999999999999887753

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.59  E-value=9.7e-13  Score=124.21  Aligned_cols=286  Identities=16%  Similarity=0.136  Sum_probs=232.1

Q ss_pred             hhhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhH
Q 013010           94 VLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV  172 (451)
Q Consensus        94 ~l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  172 (451)
                      .+..+.+..+-.+...|+...|+..|++..+   +.|+ ...|-.|...|...+.++.|...+.+.....   +....++
T Consensus       216 ~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk---ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr---pn~A~a~  289 (966)
T KOG4626|consen  216 CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK---LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR---PNHAVAH  289 (966)
T ss_pred             ceeeeehhcchHHhhcchHHHHHHHHHHhhc---CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC---Ccchhhc
Confidence            4566666777777788889999999998873   4555 3568889999999999999999998877654   2356778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      ..+...|-..|.++-|+..|++..+.  .|+ ...||.|.+++-..|++.+|.+.|.+.....   +--..+.+.|...|
T Consensus       290 gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~---p~hadam~NLgni~  364 (966)
T KOG4626|consen  290 GNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC---PNHADAMNNLGNIY  364 (966)
T ss_pred             cceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC---CccHHHHHHHHHHH
Confidence            88888899999999999999998874  565 6889999999999999999999999888764   44667889999999


Q ss_pred             HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 013010          252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFI  329 (451)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li  329 (451)
                      ...|           .+++|..+|....+-  -|. ...+|.|...|-+.|++++|..-|++...-  .|+ ...|+.+-
T Consensus       365 ~E~~-----------~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmG  429 (966)
T KOG4626|consen  365 REQG-----------KIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMG  429 (966)
T ss_pred             HHhc-----------cchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcc
Confidence            9999           888999888877754  343 467899999999999999999999998764  676 67899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010          330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEE  408 (451)
Q Consensus       330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~  408 (451)
                      ..|-..|+++.|.+.+.+....+  +.-...++.|...|..+|++.+|+.-|++..+  ++|| ...|-.++.++.--.+
T Consensus       430 nt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcd  505 (966)
T KOG4626|consen  430 NTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCD  505 (966)
T ss_pred             hHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhc
Confidence            99999999999999999988865  44567889999999999999999999998876  5566 3455555555443333


Q ss_pred             C
Q 013010          409 P  409 (451)
Q Consensus       409 ~  409 (451)
                      +
T Consensus       506 w  506 (966)
T KOG4626|consen  506 W  506 (966)
T ss_pred             c
Confidence            3

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.58  E-value=3.1e-13  Score=127.50  Aligned_cols=297  Identities=13%  Similarity=0.060  Sum_probs=223.3

Q ss_pred             hhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH
Q 013010           95 LVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC  174 (451)
Q Consensus        95 l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~  174 (451)
                      ..-.++.+++.++..|.+++|+..++.+.+.  -+.....|..+..++...|+.+.|...|....+.+...   .-..+.
T Consensus       115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l---~ca~s~  189 (966)
T KOG4626|consen  115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL---YCARSD  189 (966)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch---hhhhcc
Confidence            3444666778888999999999999999853  23356789999999999999999999999888875321   112233


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 013010          175 LIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK  253 (451)
Q Consensus       175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~  253 (451)
                      +-......|++++|...|.+..+.  .|. ...|..|...+-.+|++..|+..|++.....   |-=...|-.|-..|..
T Consensus       190 lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld---P~f~dAYiNLGnV~ke  264 (966)
T KOG4626|consen  190 LGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD---PNFLDAYINLGNVYKE  264 (966)
T ss_pred             hhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC---CcchHHHhhHHHHHHH
Confidence            344445578899999988887763  343 5678888888889999999999999988765   2234567777777777


Q ss_pred             cCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 013010          254 YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRY  331 (451)
Q Consensus       254 ~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~  331 (451)
                      .+           .++.|...+.+....  .|+ ...+..+...|...|.+|.|+..|++..+.  .|+ ...|+.|..+
T Consensus       265 ~~-----------~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanA  329 (966)
T KOG4626|consen  265 AR-----------IFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANA  329 (966)
T ss_pred             Hh-----------cchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHH
Confidence            77           777887777766543  454 456777777788888888888888888775  565 6788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCc
Q 013010          332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEPS  410 (451)
Q Consensus       332 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~  410 (451)
                      +-..|++.+|...+++.....  .--..+.+.|-..|...|.+++|..+|....+  +.|. ....+.|...|.+.|+++
T Consensus       330 Lkd~G~V~ea~~cYnkaL~l~--p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~  405 (966)
T KOG4626|consen  330 LKDKGSVTEAVDCYNKALRLC--PNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLD  405 (966)
T ss_pred             HHhccchHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHH
Confidence            888888888888888888765  34556778888888888888888888877765  4454 456778888888888888


Q ss_pred             hHHHHHHHHH
Q 013010          411 LLDDGLRKRI  420 (451)
Q Consensus       411 ~a~~~~~~~~  420 (451)
                      +|..-+++.+
T Consensus       406 ~Ai~~Ykeal  415 (966)
T KOG4626|consen  406 DAIMCYKEAL  415 (966)
T ss_pred             HHHHHHHHHH
Confidence            7755544443

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.55  E-value=2.2e-11  Score=124.57  Aligned_cols=257  Identities=14%  Similarity=0.042  Sum_probs=189.3

Q ss_pred             cCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          110 LGLNKATEFYHWVERFFDFFH-NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       110 ~~~~~A~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      +++++|++.|+...+.....| ....++.+...+...|++++|...++.......   .....|..+...+...|++++|
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P---~~~~~~~~la~~~~~~g~~~eA  384 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP---RVTQSYIKRASMNLELGDPDKA  384 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHCCCHHHH
Confidence            457788888888875422223 345677778888888999999999988887642   2455677888888888999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI  268 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~  268 (451)
                      ...|++..+.. +-+..+|..+...+...|++++|...|++.....   |.+...+..+...+.+.|           ++
T Consensus       385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~---P~~~~~~~~la~~~~~~g-----------~~  449 (615)
T TIGR00990       385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD---PDFIFSHIQLGVTQYKEG-----------SI  449 (615)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---ccCHHHHHHHHHHHHHCC-----------CH
Confidence            99998887753 3357788888888888899999999998888765   346777778888888888           88


Q ss_pred             HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHH
Q 013010          269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR------VTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~A~  342 (451)
                      ++|+..|++..+. .+-+...++.+...+...|++++|.+.|+...+..-..+.      ..++.....|...|++++|.
T Consensus       450 ~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~  528 (615)
T TIGR00990       450 ASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAE  528 (615)
T ss_pred             HHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHH
Confidence            8888888887754 2334677888888888889999999988887765211111      11222223344468889999


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      +++++.....  +.+...+..+...+...|++++|.++|++..+.
T Consensus       529 ~~~~kAl~l~--p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       529 NLCEKALIID--PECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHhcC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9988877754  344557788888888899999999988887654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.54  E-value=5.2e-11  Score=129.94  Aligned_cols=299  Identities=12%  Similarity=0.079  Sum_probs=215.1

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH----------
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC----------  174 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~----------  174 (451)
                      .+...+++++|+..|+.+...  .+.+...+..+...+...|++++|.+.|++..+....   +...+..          
T Consensus       360 ~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        360 AALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---NTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcCH
Confidence            344578899999999999864  3345667778899999999999999999998876422   2222222          


Q ss_pred             --------------------------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 013010          175 --------------------------------LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK  222 (451)
Q Consensus       175 --------------------------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  222 (451)
                                                      +...+...|++++|++.|++..+.. +-+...+..+...|.+.|++++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence                                            2234456788888888888888743 2246677778888889999999


Q ss_pred             HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH---------------------------------HHHH
Q 013010          223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR---------------------------------RRIW  269 (451)
Q Consensus       223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~---------------------------------~~~~  269 (451)
                      |...++++.+..   |.+...+..+...+...++.+.+...+.                                 ++.+
T Consensus       514 A~~~l~~al~~~---P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~  590 (1157)
T PRK11447        514 ADALMRRLAQQK---PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEA  590 (1157)
T ss_pred             HHHHHHHHHHcC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHH
Confidence            999999887653   2344444444444455554333322211                                 1344


Q ss_pred             HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010          270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ  349 (451)
Q Consensus       270 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~  349 (451)
                      +|..+++     ..+.+...+..+...+.+.|++++|.+.|+...+.. +-+...+..+...|...|+.++|++.++...
T Consensus       591 eA~~~l~-----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll  664 (1157)
T PRK11447        591 EAEALLR-----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLP  664 (1157)
T ss_pred             HHHHHHH-----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            4444444     123455667778888899999999999999988763 2367888999999999999999999999887


Q ss_pred             hcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CC---CHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          350 NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGS--VP---REYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       350 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p---~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +..  +.+...+..+..++...|++++|.++++.+....-  .|   +...+..+...+...|+.+.|.+.+++.+
T Consensus       665 ~~~--p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al  738 (1157)
T PRK11447        665 ATA--NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM  738 (1157)
T ss_pred             ccC--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            654  34556667777888899999999999999886432  22   23566677888999999999999988886

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.52  E-value=1.4e-13  Score=126.54  Aligned_cols=255  Identities=18%  Similarity=0.096  Sum_probs=76.1

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL  184 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~  184 (451)
                      +-..+++++|+++++..... ..+|+ ...|..+.......++++.|.+.++++...+..   +...+..++.. ...++
T Consensus        18 ~~~~~~~~~Al~~L~~~~~~-~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~---~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   18 LYQRGDYEKALEVLKKAAQK-IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA---NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccc---ccccccccccc-ccccc
Confidence            44455566666666433222 11222 233333334444456666666666666555422   33345555554 45666


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI  264 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~  264 (451)
                      +++|.++++...+..  ++...+..++..+.+.++++++..+++.+....- .+++...|..+...+.+.|         
T Consensus        93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~a~~~~~~G---------  160 (280)
T PF13429_consen   93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPA-APDSARFWLALAEIYEQLG---------  160 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T----T-HHHHHHHHHHHHHCC---------
T ss_pred             ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcC---------
Confidence            666666665554432  3445555556666666666666666666543221 1345555666666666666         


Q ss_pred             HHHHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013010          265 RRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE  343 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~  343 (451)
                        +.++|++.+++..+.  .| |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.
T Consensus       161 --~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~  235 (280)
T PF13429_consen  161 --DPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALE  235 (280)
T ss_dssp             --HHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHH
T ss_pred             --CHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccc
Confidence              666666666666554  23 34555556666666666666666665555442 2344455566666666666666666


Q ss_pred             HHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       344 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      +|++..+..  +.|+.....+.+++...|+.++|.++..+.
T Consensus       236 ~~~~~~~~~--p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  236 YLEKALKLN--PDDPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHS--TT-HHHHHHHHHHHT---------------
T ss_pred             ccccccccc--cccccccccccccccccccccccccccccc
Confidence            666665544  345555566666666666666666665544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.50  E-value=1.7e-10  Score=111.11  Aligned_cols=285  Identities=10%  Similarity=0.038  Sum_probs=212.0

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHH-HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEM-GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      .|++++|........+.   .++...+..+ ..+..+.|+++.|.+.+.++.+.....  .....-.....+...|+++.
T Consensus        97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~--~~~~~l~~a~l~l~~g~~~~  171 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADND--QLPVEITRVRIQLARNENHA  171 (398)
T ss_pred             CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHCCCHHH
Confidence            57889999888776543   2223333333 444478999999999999998764221  11111233567888999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH------HHHHHHHHHHHhcCCchhhh
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV------YTYTILISSYCKYGMQTGCR  261 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~------~~~~~li~~~~~~g~~~~~~  261 (451)
                      |.+.++++.+.. +-+......+...|.+.|++++|.+++..+.+.+.. +|..      .+|..++.......      
T Consensus       172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~l~~~~~~~~------  243 (398)
T PRK10747        172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVG-DEEHRAMLEQQAWIGLMDQAMADQ------  243 (398)
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc------
Confidence            999999998865 346788889999999999999999999999998753 2221      12233333332322      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010          262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A  341 (451)
                           +.+...++++.+... .+.+......+...+...|+.++|.+++++..+.  .||...  .++.+....++.+++
T Consensus       244 -----~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~a  313 (398)
T PRK10747        244 -----GSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQL  313 (398)
T ss_pred             -----CHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHH
Confidence                 344555566555432 3457788888999999999999999999998875  455522  234444566999999


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      .+..+...+..  +-|...+..+-..|.+.|++++|.+.|+...+  ..|+..+|..+..++.+.|+.++|.+.+++-.
T Consensus       314 l~~~e~~lk~~--P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        314 EKVLRQQIKQH--GDTPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHHHhhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999875  45666788889999999999999999999987  46999999999999999999999988777543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.50  E-value=1.4e-10  Score=126.50  Aligned_cols=118  Identities=14%  Similarity=0.063  Sum_probs=83.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHH
Q 013010          297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE  376 (451)
Q Consensus       297 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~  376 (451)
                      +...|+.++|.++++.     .+.+...+..+...|.+.|+.++|++.|++..+..  +.+...+..+...|...|++++
T Consensus       583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~--P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE--PGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHH
Confidence            3344444444444441     12344556667777888888888888888888765  4567788888888889999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          377 ARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       377 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      |.+.++...+.. +-+..++..+..++...|++++|.+.+++.+..
T Consensus       656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            999988776532 123456667778888899999898888887753

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.49  E-value=3.1e-13  Score=124.25  Aligned_cols=261  Identities=14%  Similarity=0.091  Sum_probs=113.5

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 013010          137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR  216 (451)
Q Consensus       137 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  216 (451)
                      .+...+.+.|++++|++++........ ++.+...|..+...+-..++.+.|.+.|+++.+.+-. +...+..++.. ..
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~   89 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ   89 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence            567888899999999999965544431 1224555666777777899999999999999986533 56677777777 78


Q ss_pred             cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHH
Q 013010          217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLID  295 (451)
Q Consensus       217 ~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~  295 (451)
                      .+++++|.+++...-+..    ++...+..++..+.+.+           +++++..+++...... .+.+...|..+..
T Consensus        90 ~~~~~~A~~~~~~~~~~~----~~~~~l~~~l~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~  154 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERD----GDPRYLLSALQLYYRLG-----------DYDEAEELLEKLEELPAAPDSARFWLALAE  154 (280)
T ss_dssp             --------------------------------H-HHHTT------------HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred             cccccccccccccccccc----cccchhhHHHHHHHHHh-----------HHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence            999999999998765543    56677888899999999           8899999998876532 3567788888899


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010          296 GCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV  374 (451)
Q Consensus       296 ~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~  374 (451)
                      .+.+.|+.++|.+.+++..+.  .| |....+.++..+...|+.+++.+++....+..  ..|...+..+..+|...|+.
T Consensus       155 ~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~  230 (280)
T PF13429_consen  155 IYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRY  230 (280)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-H
T ss_pred             HHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccc
Confidence            999999999999999999887  46 57788899999999999999999999988875  46667888999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          375 LEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       375 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      ++|..++++..+.. +-|..+...+.+++...|+.+.|.++.++..
T Consensus       231 ~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  231 EEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             HHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred             cccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            99999999988742 3378888999999999999999988877554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.49  E-value=5.8e-10  Score=116.51  Aligned_cols=304  Identities=12%  Similarity=0.068  Sum_probs=179.2

Q ss_pred             hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010          107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN  186 (451)
Q Consensus       107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~  186 (451)
                      ...|+.++|++++......  -+.+...+..+..++.+.|++++|.+++++..+...   .+...+..+...+...|+.+
T Consensus        26 ~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         26 LWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP---QNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCCHH
Confidence            3456677777777776531  233455577777777777888888888877776642   13445667777777778888


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH-
Q 013010          187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR-  265 (451)
Q Consensus       187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~-  265 (451)
                      +|...+++..+.. +.+.. +..+..++...|+.++|+..++++.+..   |.+...+..+...+...+..+.+.+.+. 
T Consensus       101 eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~---P~~~~~~~~la~~l~~~~~~e~Al~~l~~  175 (765)
T PRK10049        101 EALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA---PQTQQYPTEYVQALRNNRLSAPALGAIDD  175 (765)
T ss_pred             HHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence            8888887777642 23444 6677777777788888888887777664   2344555556666665555443332221 


Q ss_pred             -------------------------------HHH---HHHHHHHHHHHhc-CCCCCHh-hHH----HHHHHHHhcCCHHH
Q 013010          266 -------------------------------RRI---WEANHLFRLMLFK-GFVPDVV-AYN----CLIDGCCKTYRIER  305 (451)
Q Consensus       266 -------------------------------~~~---~~a~~~~~~m~~~-~~~~~~~-~~~----~li~~~~~~g~~~~  305 (451)
                                                     +++   ++|++.++.+.+. ...|+.. .+.    ..+.++...|++++
T Consensus       176 ~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~e  255 (765)
T PRK10049        176 ANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKD  255 (765)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence                                           112   4566666666543 1122211 111    11334456677777


Q ss_pred             HHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010          306 ALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP--TSSSYTPIIHALCEAGRVLEARDFLA  382 (451)
Q Consensus       306 a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~  382 (451)
                      |...|+.+.+.+-. |+. .-..+...|...|++++|+.+|+++.+.....+  ....+..+..++...|++++|.++++
T Consensus       256 A~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~  334 (765)
T PRK10049        256 VISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTA  334 (765)
T ss_pred             HHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence            77777777766421 321 111135567777777777777777665331110  12345555556677777777777777


Q ss_pred             HHHhCC-----------CCCC---HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          383 ELVDGG-----------SVPR---EYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       383 ~m~~~g-----------~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      .+.+..           -.|+   ...+..+...+...|+.++|.+.+++...
T Consensus       335 ~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~  387 (765)
T PRK10049        335 HTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY  387 (765)
T ss_pred             HHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            776542           1122   12344556667777777777777776653

>TIGR00540 hemY_coli hemY protein

Probab=99.47  E-value=5.4e-10  Score=108.28  Aligned_cols=292  Identities=10%  Similarity=0.008  Sum_probs=209.9

Q ss_pred             hhhcCHHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010          107 KVTLGLNKATEFYHWVERFFDFFHNEM-TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV  185 (451)
Q Consensus       107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~  185 (451)
                      ...|+++.|.+.+....+   ..|+.. .+-....+..+.|+.+.|.+.+.+..+....  ......-.....+...|++
T Consensus        95 ~~~g~~~~A~~~l~~~~~---~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~--~~l~~~~~~a~l~l~~~~~  169 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNAD---HAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN--DNILVEIARTRILLAQNEL  169 (409)
T ss_pred             HhCCCHHHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc--CchHHHHHHHHHHHHCCCH
Confidence            346789999999988764   345433 3344456778889999999999998776422  2222333457778889999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH-HHHHH---HhcCCchhhh
Q 013010          186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-LISSY---CKYGMQTGCR  261 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~-li~~~---~~~g~~~~~~  261 (451)
                      +.|.+.++.+.+.. +-+......+...+...|++++|.+++..+.+.+..   +...+.. -..++   ...+      
T Consensus       170 ~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~---~~~~~~~l~~~a~~~~l~~~------  239 (409)
T TIGR00540       170 HAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF---DDEEFADLEQKAEIGLLDEA------  239 (409)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHHHHHHH------
Confidence            99999999999865 336778889999999999999999999999998753   3333321 11121   2222      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhc
Q 013010          262 KAIRRRIWEANHLFRLMLFKG---FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT---YNSFIRYYSVV  335 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t---~~~li~~~~~~  335 (451)
                           ..+++.+.+..+.+..   .+.+...+-.+...+...|+.++|.+++++..+.  .||...   ...........
T Consensus       240 -----~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~  312 (409)
T TIGR00540       240 -----MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKP  312 (409)
T ss_pred             -----HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCC
Confidence                 2223333444444331   1237788888999999999999999999999886  344432   12222233446


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHH
Q 013010          336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG  415 (451)
Q Consensus       336 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~  415 (451)
                      ++.+.+.+.++...+.....|+.....++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++
T Consensus       313 ~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~  392 (409)
T TIGR00540       313 EDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAM  392 (409)
T ss_pred             CChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88899999999888764222222556678888999999999999999655555679999999999999999999999888


Q ss_pred             HHHHH
Q 013010          416 LRKRI  420 (451)
Q Consensus       416 ~~~~~  420 (451)
                      +++..
T Consensus       393 ~~~~l  397 (409)
T TIGR00540       393 RQDSL  397 (409)
T ss_pred             HHHHH
Confidence            88643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.44  E-value=1.6e-09  Score=111.79  Aligned_cols=304  Identities=10%  Similarity=0.036  Sum_probs=167.9

Q ss_pred             hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010          107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN  186 (451)
Q Consensus       107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~  186 (451)
                      ...|..++|+..++....  ..+........+...+...|++++|.++++++.+....   +...+..++..+...++.+
T Consensus        79 ~~~G~~~~A~~~~eka~~--p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~q~~  153 (822)
T PRK14574         79 GWAGRDQEVIDVYERYQS--SMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT---NPDLISGMIMTQADAGRGG  153 (822)
T ss_pred             HHcCCcHHHHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcCCHH
Confidence            344677888888888761  11222333333456778889999999999999887633   4556777788888899999


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH-
Q 013010          187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR-  265 (451)
Q Consensus       187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~-  265 (451)
                      +|++.++++...  .|+...+-.++..+...++..+|++.++++.+..   |-+...+..++.++.+.|-..-+.+... 
T Consensus       154 eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~---P~n~e~~~~~~~~l~~~~~~~~a~~l~~~  228 (822)
T PRK14574        154 VVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA---PTSEEVLKNHLEILQRNRIVEPALRLAKE  228 (822)
T ss_pred             HHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence            999999988874  4666666555445545666666999999988875   2366677777777777775444433221 


Q ss_pred             ---------------------------------HH---HHHHHHHHHHHHhc-CCCCC-HhhH----HHHHHHHHhcCCH
Q 013010          266 ---------------------------------RR---IWEANHLFRLMLFK-GFVPD-VVAY----NCLIDGCCKTYRI  303 (451)
Q Consensus       266 ---------------------------------~~---~~~a~~~~~~m~~~-~~~~~-~~~~----~~li~~~~~~g~~  303 (451)
                                                       ++   .+.|+.-++.+... +-.|. ...|    --.+.++...|++
T Consensus       229 ~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~  308 (822)
T PRK14574        229 NPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQT  308 (822)
T ss_pred             CccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhH
Confidence                                             01   11222222222221 11111 1111    1123344455555


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCChhhHHHHHHHHHHcCCHHHHHH
Q 013010          304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH----GVPTSSSYTPIIHALCEAGRVLEARD  379 (451)
Q Consensus       304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~~~~A~~  379 (451)
                      .++.+.|+.|...|.+.-..+-..+..+|...+++++|..++..+.....    ..++......|..+|...+++++|..
T Consensus       309 ~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~  388 (822)
T PRK14574        309 ADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQ  388 (822)
T ss_pred             HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHH
Confidence            55555555555555432233444555555555555555555555543221    01222233455555555555555555


Q ss_pred             HHHHHHhCCC-----------CCC---HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          380 FLAELVDGGS-----------VPR---EYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       380 l~~~m~~~g~-----------~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +++.+.+.--           .|+   ...+..++..+...|++..|.+.++++.
T Consensus       389 ~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~  443 (822)
T PRK14574        389 FAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLS  443 (822)
T ss_pred             HHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555554110           111   1223334455555555555555555554

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.43  E-value=1.8e-09  Score=112.90  Aligned_cols=297  Identities=11%  Similarity=0.016  Sum_probs=200.1

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      ..+...+++++|..+|+.....  .+.+...+..+...+...|++++|...+++..+...   .+.. +..+...+...|
T Consensus        57 ~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P---~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         57 VAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP---DKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHH-HHHHHHHHHHCC
Confidence            3466678899999999998753  344566777888889999999999999999988742   2455 888888899999


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-------------------------------
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-------------------------------  232 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------------------------------  232 (451)
                      +.++|+..++++.+.. +-+...+..+..++...+..+.|+..++....                               
T Consensus       131 ~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~  209 (765)
T PRK10049        131 RHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY  209 (765)
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence            9999999999998853 22455556667777777777766666654332                               


Q ss_pred             ---------------CCCCCCCCHH-HHH----HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CCHhhHH
Q 013010          233 ---------------PGFRCPPDVY-TYT----ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYN  291 (451)
Q Consensus       233 ---------------~g~~~~p~~~-~~~----~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~  291 (451)
                                     .--. .|+.. .+.    ..+..+...|           ++++|...|+.+.+.+-. |+. .--
T Consensus       210 ~~ad~Al~~~~~ll~~~~~-~p~~~~~~~~a~~d~l~~Ll~~g-----------~~~eA~~~~~~ll~~~~~~P~~-a~~  276 (765)
T PRK10049        210 AIADRALAQYDALEALWHD-NPDATADYQRARIDRLGALLARD-----------RYKDVISEYQRLKAEGQIIPPW-AQR  276 (765)
T ss_pred             HHHHHHHHHHHHHHhhccc-CCccchHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHhhccCCCCCHH-HHH
Confidence                           1000 01110 000    0011223333           788899999888876522 322 112


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----------CCCCh
Q 013010          292 CLIDGCCKTYRIERALELFDDMNKKGCIP---NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH----------GVPTS  358 (451)
Q Consensus       292 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~----------~~p~~  358 (451)
                      .+..+|...|++++|...|+.+.+..-..   .......+..++...|++++|.++++.+.....          ..|+.
T Consensus       277 ~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~  356 (765)
T PRK10049        277 WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND  356 (765)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence            24667888899999999988876542111   134456666778888888888888888876531          02231


Q ss_pred             ---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          359 ---SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       359 ---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                         ..+..+...+...|+.++|.++++++.... +-+...+..+...+...|+++.|.+.+++.+.
T Consensus       357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~  421 (765)
T PRK10049        357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV  421 (765)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence               234556667778888888888888877542 33466777777788888888888888777764

>PF13041 PPR_2: PPR repeat family

Probab=99.41  E-value=6e-13  Score=87.04  Aligned_cols=50  Identities=48%  Similarity=0.814  Sum_probs=41.4

Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV  334 (451)
Q Consensus       285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  334 (451)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67888888888888888888888888888888888888888888888764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.41  E-value=2.6e-09  Score=112.46  Aligned_cols=289  Identities=13%  Similarity=0.058  Sum_probs=212.0

Q ss_pred             hcCHHHHHHHHHHHhh-cCCCCCCHHhHHHHHHHHHccCC---hhHHHHH----------------------HHHHHHcC
Q 013010          109 TLGLNKATEFYHWVER-FFDFFHNEMTCKEMGIVFARGNN---VKGLWDF----------------------LKDMSRRG  162 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~-~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~----------------------~~~m~~~~  162 (451)
                      .|..++|..+|+.... ...-..+....+.++..|.+.+.   ..++..+                      .......-
T Consensus       389 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  468 (987)
T PRK09782        389 NGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL  468 (987)
T ss_pred             cccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc
Confidence            4557888888887764 21122344556678888887766   3333222                      11111111


Q ss_pred             CCCCc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC
Q 013010          163 NGELV--TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD  240 (451)
Q Consensus       163 ~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~  240 (451)
                      ...+.  +...|..+..++.. ++.++|...|.+....  .|+......+..++...|++++|...|+++....    |+
T Consensus       469 ~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~----p~  541 (987)
T PRK09782        469 GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD----MS  541 (987)
T ss_pred             ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC----CC
Confidence            11122  56677888877776 8888999988887764  4665554444555568999999999999876542    55


Q ss_pred             HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010          241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP  320 (451)
Q Consensus       241 ~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  320 (451)
                      ...+..+...+.+.|           +.++|...++...+.. +.+...+..+...+...|++++|...+++..+.  .|
T Consensus       542 ~~a~~~la~all~~G-----------d~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P  607 (987)
T PRK09782        542 NEDLLAAANTAQAAG-----------NGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--AP  607 (987)
T ss_pred             cHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CC
Confidence            556677788888999           8899999999888753 223333333334445569999999999998876  57


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC  400 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li  400 (451)
                      +...|..+...+.+.|+.++|...+++.....  +-+...++.+-..+...|++++|.+.+++..+.. +-+...+..+.
T Consensus       608 ~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~--Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA  684 (987)
T PRK09782        608 SANAYVARATIYRQRHNVPAAVSDLRAALELE--PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLA  684 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            78889999999999999999999999999876  5667788888889999999999999999988753 23567888999


Q ss_pred             HHHHhcCCCchHHHHHHHHHH
Q 013010          401 DALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       401 ~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      .++...|+++.|...+++.++
T Consensus       685 ~al~~lGd~~eA~~~l~~Al~  705 (987)
T PRK09782        685 YVNQRLDDMAATQHYARLVID  705 (987)
T ss_pred             HHHHHCCCHHHHHHHHHHHHh
Confidence            999999999999999999875

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=1.7e-10  Score=110.53  Aligned_cols=277  Identities=16%  Similarity=0.088  Sum_probs=212.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH-HHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV-NEALA  190 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~  190 (451)
                      .++|+..|..++.+  ..-+......+..+|...+++++|.++|+.+.+...-...+..+|.+.+.-+-+.=.. -.|.+
T Consensus       335 ~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  335 CREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            68888888886653  3334466777888999999999999999999887654455778888887654321111 11222


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010          191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE  270 (451)
Q Consensus       191 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~  270 (451)
                      +.+.+     +-.+.+|.++.++|.-+++++.|++.|++..+..   +-..++|+.+-.-+....           .+|.
T Consensus       413 Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld---p~faYayTLlGhE~~~~e-----------e~d~  473 (638)
T KOG1126|consen  413 LIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD---PRFAYAYTLLGHESIATE-----------EFDK  473 (638)
T ss_pred             HHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC---CccchhhhhcCChhhhhH-----------HHHh
Confidence            32222     3467999999999999999999999999998765   227888888888777777           8999


Q ss_pred             HHHHHHHHHhcCCCCCHhhHHHH---HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          271 ANHLFRLMLFKGFVPDVVAYNCL---IDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       271 a~~~~~~m~~~~~~~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      |...|+....    .|...||+.   .-.|.+.++++.|+-.|+...+.  .| +.+....+...+-+.|+.|+|+.+++
T Consensus       474 a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--NP~nsvi~~~~g~~~~~~k~~d~AL~~~~  547 (638)
T KOG1126|consen  474 AMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--NPSNSVILCHIGRIQHQLKRKDKALQLYE  547 (638)
T ss_pred             HHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcC--CccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence            9999987764    477788775   45688999999999999998876  45 56667777888889999999999999


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010          347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKR  419 (451)
Q Consensus       347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~  419 (451)
                      +......  -|+..--.-...+...+++++|+..++++++  +.|+ ...|..+...|.+-|+.+.|..-+--+
T Consensus       548 ~A~~ld~--kn~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A  617 (638)
T KOG1126|consen  548 KAIHLDP--KNPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWA  617 (638)
T ss_pred             HHHhcCC--CCchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHH
Confidence            9988763  4444444455667888999999999999987  4565 567888899999999999775544433

>PF13041 PPR_2: PPR repeat family

Probab=99.40  E-value=8.1e-13  Score=86.43  Aligned_cols=50  Identities=30%  Similarity=0.626  Sum_probs=41.1

Q ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA  405 (451)
Q Consensus       356 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~  405 (451)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67788888888888888888888888888888888888888888888764

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.38  E-value=4.8e-09  Score=108.23  Aligned_cols=291  Identities=11%  Similarity=-0.005  Sum_probs=207.9

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCH--HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNE--MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      ..+.|+.+.|++.|+...+.   .|+.  ..+ .++..+...|+.++|...+++.....   +........+...|...|
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~---n~~~~~llalA~ly~~~g  116 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM---NISSRGLASAARAYRNEK  116 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC---CCCHHHHHHHHHHHHHcC
Confidence            34578889999999999853   4443  233 88888889999999999999988322   223333444466888899


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA  263 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~  263 (451)
                      ++++|+++|+++.+.. +-+...+..++..+...++.++|++.++.+....    |+...+..++..+...+        
T Consensus       117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d----p~~~~~l~layL~~~~~--------  183 (822)
T PRK14574        117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD----PTVQNYMTLSYLNRATD--------  183 (822)
T ss_pred             CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC----cchHHHHHHHHHHHhcc--------
Confidence            9999999999999864 2346777788889999999999999999998775    77666644433333333        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHH---------------------------------
Q 013010          264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELF---------------------------------  310 (451)
Q Consensus       264 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~---------------------------------  310 (451)
                         +..+|++.++++.+.. +-+...+..++.++.+.|-...|.++.                                 
T Consensus       184 ---~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~  259 (822)
T PRK14574        184 ---RNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS  259 (822)
T ss_pred             ---hHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence               4545888888887652 223444455555555555444333333                                 


Q ss_pred             ---------------HHHHh-CCCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010          311 ---------------DDMNK-KGCIPNR-VTY----NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC  369 (451)
Q Consensus       311 ---------------~~m~~-~g~~p~~-~t~----~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~  369 (451)
                                     +.+.. .+-.|.. .-|    --.+-++...|+.+++++.++.+...+...| ..+-..+.++|.
T Consensus       260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P-~y~~~a~adayl  338 (822)
T PRK14574        260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP-DYARRWAASAYI  338 (822)
T ss_pred             chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC-HHHHHHHHHHHH
Confidence                           22222 1112321 112    2345577889999999999999998885234 457788999999


Q ss_pred             HcCCHHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          370 EAGRVLEARDFLAELVDGG-----SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       370 ~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      ..+.+++|..+|.++....     ..++......|.-++...|++++|..++.++.+
T Consensus       339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~  395 (822)
T PRK14574        339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE  395 (822)
T ss_pred             hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence            9999999999999997543     233455568899999999999999999999986

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.38  E-value=1.3e-09  Score=105.00  Aligned_cols=252  Identities=10%  Similarity=-0.022  Sum_probs=199.2

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHH--HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCK--EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      ....|+.++|.+.|..+.+   ..|+...+.  .....+...|+++.|...++.+.+....   +...+..+...|.+.|
T Consensus       128 A~~~g~~~~A~~~l~~A~~---~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~---~~~al~ll~~~~~~~g  201 (398)
T PRK10747        128 AQQRGDEARANQHLERAAE---LADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR---HPEVLRLAEQAYIRTG  201 (398)
T ss_pred             HHHCCCHHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHHH
Confidence            3557889999999999974   455554333  3356788999999999999999988733   6678999999999999


Q ss_pred             CHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010          184 LVNEALATFYRMKQFRCRPDV-------YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM  256 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~  256 (451)
                      ++++|.+++..+.+.+..++.       .+|..++.......+.+...++++.+...-   +.+......+...+...| 
T Consensus       202 dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~---~~~~~~~~~~A~~l~~~g-  277 (398)
T PRK10747        202 AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKT---RHQVALQVAMAEHLIECD-  277 (398)
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHH---hCCHHHHHHHHHHHHHCC-
Confidence            999999999999997754322       233444444445556677777777765432   357888899999999999 


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 013010          257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVV  335 (451)
Q Consensus       257 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~  335 (451)
                                +.++|.+++++..+.  .||...  .++.+.+..++.+++.+..+...+.  .| |...+..+-..|.+.
T Consensus       278 ----------~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~  341 (398)
T PRK10747        278 ----------DHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKH  341 (398)
T ss_pred             ----------CHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHC
Confidence                      889999999888874  455422  2345556679999999999998876  45 566788889999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       336 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      +++++|.+.|+...+.   .|+...|..+...+.+.|+.++|.+++++-..
T Consensus       342 ~~~~~A~~~le~al~~---~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        342 GEWQEASLAFRAALKQ---RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CCHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            9999999999999985   59999999999999999999999999987653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.37  E-value=3.1e-09  Score=93.48  Aligned_cols=295  Identities=13%  Similarity=0.088  Sum_probs=213.4

Q ss_pred             cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCHHHH
Q 013010          110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      ...++|++.|-+|.+.  -+-+..+--+|.+.|.+.|.++.|+++.+.+.++..-+ .--....-.|..-|...|-++.|
T Consensus        49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             cCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            3479999999999863  33455566678899999999999999999988863211 11223455677888999999999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH-HHHHHHhcCCchhhhHHHHHH
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-LISSYCKYGMQTGCRKAIRRR  267 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~-li~~~~~~g~~~~~~~~~~~~  267 (451)
                      +.+|..+.+.|. .-......|+..|-...+|++|.++-+++.+.+-.  +    |+. +...||.......+.    .+
T Consensus       127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q--~----~~~eIAqfyCELAq~~~~~----~~  195 (389)
T COG2956         127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ--T----YRVEIAQFYCELAQQALAS----SD  195 (389)
T ss_pred             HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc--c----chhHHHHHHHHHHHHHhhh----hh
Confidence            999999998652 34667788999999999999999999999887632  2    222 233444433222222    28


Q ss_pred             HHHHHHHHHHHHhcCCCCCHhhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          268 IWEANHLFRLMLFKGFVPDVVAYN-CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       268 ~~~a~~~~~~m~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      ++.|..++.+..+.+  |+.+--+ .+-+.....|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+.
T Consensus       196 ~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~  273 (389)
T COG2956         196 VDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR  273 (389)
T ss_pred             HHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            888999998887653  3332223 3446778999999999999999998655567788999999999999999999999


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHhc
Q 013010          347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP---SLLDDGLRKRIRDG  423 (451)
Q Consensus       347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~---~~a~~~~~~~~~~g  423 (451)
                      .+.+..   +....-..+-+......-.+.|..++.+-+..  .|+...+..|++.-...++.   ..-...+++|+..-
T Consensus       274 ~~~~~~---~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~  348 (389)
T COG2956         274 RAMETN---TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ  348 (389)
T ss_pred             HHHHcc---CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence            988865   34444455555555555577777777666553  59999999999887655443   44445666666433


Q ss_pred             h
Q 013010          424 I  424 (451)
Q Consensus       424 ~  424 (451)
                      +
T Consensus       349 l  349 (389)
T COG2956         349 L  349 (389)
T ss_pred             H
Confidence            3

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.36  E-value=3.9e-09  Score=111.13  Aligned_cols=260  Identities=12%  Similarity=-0.011  Sum_probs=199.5

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...|..+..++.. ++.++|...+.+.....  |  +......+...+...|++++|...|+++...  +|+...+..+
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--P--d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l  548 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--P--DAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA  548 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--C--chHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence            56778888888876 89999999888877764  2  3222333344456899999999999998664  4555667777


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY  290 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  290 (451)
                      ..++.+.|+.++|...+++..+..   +++...+..+.....+.|           ++++|...+++..+.  .|+...|
T Consensus       549 a~all~~Gd~~eA~~~l~qAL~l~---P~~~~l~~~La~~l~~~G-----------r~~eAl~~~~~AL~l--~P~~~a~  612 (987)
T PRK09782        549 ANTAQAAGNGAARDRWLQQAEQRG---LGDNALYWWLHAQRYIPG-----------QPELALNDLTRSLNI--APSANAY  612 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHh--CCCHHHH
Confidence            888999999999999999998765   234444444444555668           999999999999865  5678889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC  369 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~  369 (451)
                      ..+..++.+.|+.++|...++...+.  .| +...++.+-..+...|+.++|+..+++..+..  +-+...+..+-.++.
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~--P~~~~a~~nLA~al~  688 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL--PDDPALIRQLAYVNQ  688 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence            99999999999999999999998887  35 56777888889999999999999999999875  556778899999999


Q ss_pred             HcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010          370 EAGRVLEARDFLAELVDGGSVPRE-YTYKLVCDALNAAEEPSLLDDGLRKR  419 (451)
Q Consensus       370 ~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~  419 (451)
                      ..|++++|...+++..+..  |+. .+.-...+...+..+++.+.+.+...
T Consensus       689 ~lGd~~eA~~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~  737 (987)
T PRK09782        689 RLDDMAATQHYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRR  737 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998743  543 33333444455555555444444433

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.34  E-value=6.3e-11  Score=116.41  Aligned_cols=264  Identities=11%  Similarity=0.118  Sum_probs=175.4

Q ss_pred             HHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010          118 FYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       118 ~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  197 (451)
                      |+-.+... |+.|+..||.++|.-||..|+.+.|- +|.-|..+..+.  +...++.++.+....++.+.+.        
T Consensus        12 fla~~e~~-gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv--~e~vf~~lv~sh~~And~Enpk--------   79 (1088)
T KOG4318|consen   12 FLALHEIS-GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPV--REGVFRGLVASHKEANDAENPK--------   79 (1088)
T ss_pred             HHHHHHHh-cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccc--cchhHHHHHhcccccccccCCC--------
Confidence            44445544 99999999999999999999999998 998888876543  6678999999999999887765        


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHHh----hhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH-----HH
Q 013010          198 FRCRPDVYAYNVVINALCRVGNFNK---ARFLLEQM----ELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA-----IR  265 (451)
Q Consensus       198 ~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m----~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~-----~~  265 (451)
                         .|...||..|+.+|...||+..   +.+.+...    ...|+. .|.. -+-..+++ +..-. ..+...     .+
T Consensus        80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~-~fl~k~~c-~p~~l-pda~n~illlv~e  152 (1088)
T KOG4318|consen   80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPER-WFLMKIHC-CPHSL-PDAENAILLLVLE  152 (1088)
T ss_pred             ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHH-HHHhhccc-Ccccc-hhHHHHHHHHHHH
Confidence               6899999999999999999755   32222221    223432 1111 11111121 11111 111111     12


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010          266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM  345 (451)
Q Consensus       266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~  345 (451)
                      +-++.+.+++..+....-  +. ++-.+++-+..  ......++......-.-.|+..+|.+++..-..+|+++.|..++
T Consensus       153 glwaqllkll~~~Pvsa~--~~-p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll  227 (1088)
T KOG4318|consen  153 GLWAQLLKLLAKVPVSAW--NA-PFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLL  227 (1088)
T ss_pred             HHHHHHHHHHhhCCcccc--cc-hHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHH
Confidence            244455555544332110  00 11112333222  23344455544443322589999999999999999999999999


Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010          346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP  409 (451)
Q Consensus       346 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~  409 (451)
                      .+|++.|. +.+.+-|..|+-+   .++..-+..++..|.+.|+.|+..|+...+..+.+.|..
T Consensus       228 ~emke~gf-pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t  287 (1088)
T KOG4318|consen  228 YEMKEKGF-PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQT  287 (1088)
T ss_pred             HHHHHcCC-Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhh
Confidence            99999998 6677777777655   888888899999999999999999998887777775543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.29  E-value=4.6e-09  Score=93.32  Aligned_cols=197  Identities=14%  Similarity=0.062  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      .+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....   +.+...+..+...
T Consensus        33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~~~~  108 (234)
T TIGR02521        33 IRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN---PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHHHHH
Confidence            34444445555555555555555544422 1223444444455555555555555555544432   1233444445555


Q ss_pred             HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010          251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI  329 (451)
Q Consensus       251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  329 (451)
                      +...|           ++++|.+.+.+...... ......+..+...+...|++++|.+.+.+..+.. +.+...+..+.
T Consensus       109 ~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la  176 (234)
T TIGR02521       109 LCQQG-----------KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA  176 (234)
T ss_pred             HHHcc-----------cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence            55555           45555555555443211 1122334444445555555555555555554432 11334455555


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      ..+...|++++|...+++.....  ..+...+..+...+...|+.++|..+.+.+.
T Consensus       177 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       177 ELYYLRGQYKDARAYLERYQQTY--NQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            55555555666555555555442  3344444455555555555555555555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00540 hemY_coli hemY protein

Probab=99.29  E-value=6e-09  Score=100.99  Aligned_cols=258  Identities=10%  Similarity=-0.021  Sum_probs=186.0

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEM--TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE  182 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~  182 (451)
                      .+...|+.++|.+.+....+.   .|+..  .--.....+...|+++.|...++.+.+....   +..++..+...+...
T Consensus       127 aa~~~g~~~~A~~~l~~a~~~---~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~---~~~~l~ll~~~~~~~  200 (409)
T TIGR00540       127 AAQQRGDEARANQHLEEAAEL---AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR---HKEVLKLAEEAYIRS  200 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh---CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHH
Confidence            345568899999999998754   24432  3333577788899999999999999998633   556788999999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHH-HHHHHHH---HhcCChHHHHHHHHHhhhCCC-CCCCCHHHHHHHHHHHHhcCCc
Q 013010          183 GLVNEALATFYRMKQFRCRPDVYAY-NVVINAL---CRVGNFNKARFLLEQMELPGF-RCPPDVYTYTILISSYCKYGMQ  257 (451)
Q Consensus       183 g~~~~A~~~~~~m~~~g~~p~~~~~-~~li~~~---~~~g~~~~a~~~~~~m~~~g~-~~~p~~~~~~~li~~~~~~g~~  257 (451)
                      |++++|.+.+..+.+.++. +...+ ..-..++   ...+..+...+.+..+.+... ..+.+...+..+...+...|  
T Consensus       201 ~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g--  277 (409)
T TIGR00540       201 GAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCD--  277 (409)
T ss_pred             hhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC--
Confidence            9999999999999998754 33333 2222222   222233333334444443320 01137888999999999999  


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHH
Q 013010          258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA---YNCLIDGCCKTYRIERALELFDDMNKKGCIPNR---VTYNSFIRY  331 (451)
Q Consensus       258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~  331 (451)
                               +.++|.+++++..+.  .||...   ...........++.+.+.+.++...+.  .|+.   ....++-..
T Consensus       278 ---------~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l  344 (409)
T TIGR00540       278 ---------DHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQL  344 (409)
T ss_pred             ---------ChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHH
Confidence                     899999999999875  344432   122223334567888899988887765  4543   455678888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       332 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      |.+.|++++|.+.|+....... .|+...+..+...+.+.|+.++|.+++++-.
T Consensus       345 ~~~~~~~~~A~~~le~a~a~~~-~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       345 LMKHGEFIEAADAFKNVAACKE-QLDANDLAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHcccHHHHHHHHHHhHHhhc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999999999995433333 6889889999999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.27  E-value=5.9e-09  Score=92.58  Aligned_cols=201  Identities=14%  Similarity=0.094  Sum_probs=165.8

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       202 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      .....+..+...+...|++++|...+++..+..   +.+...+..+...|...|           ++++|.+.+++..+.
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~al~~   94 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHD---PDDYLAYLALALYYQQLG-----------ELEKAEDSFRRALTL   94 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhh
Confidence            346778888899999999999999999988764   346778888999999999           889999999988865


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhh
Q 013010          282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS  360 (451)
Q Consensus       282 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~  360 (451)
                      . +.+...+..+...+...|++++|.+.++........| ....+..+...|...|++++|...+++..+..  +.+...
T Consensus        95 ~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~  171 (234)
T TIGR02521        95 N-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID--PQRPES  171 (234)
T ss_pred             C-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCChHH
Confidence            3 3355677888889999999999999999988753223 45567778888999999999999999998865  445678


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       361 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +..+...+...|++++|.+++++..+. ...+...+..+...+...|+.+.+......+.
T Consensus       172 ~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       172 LLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            888999999999999999999999876 34466777788899999999998877766543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.26  E-value=8.1e-09  Score=103.98  Aligned_cols=248  Identities=11%  Similarity=0.059  Sum_probs=156.8

Q ss_pred             hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH---------hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 013010          149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG---------EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN  219 (451)
Q Consensus       149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  219 (451)
                      ++|..+|++..+....   +...|..+..++.         ..+++++|...+++..+.+ +-+..++..+...+...|+
T Consensus       278 ~~A~~~~~~Al~ldP~---~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        278 QQALKLLTQCVNMSPN---SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence            6777777777776422   3445555544332         2355788888888887753 2356777777777788888


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHH
Q 013010          220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-VAYNCLIDGCC  298 (451)
Q Consensus       220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~  298 (451)
                      +++|...|++..+..   |.+...+..+...+...|           ++++|...+++..+.  .|+. ..+..++..+.
T Consensus       354 ~~~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~G-----------~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~  417 (553)
T PRK12370        354 YIVGSLLFKQANLLS---PISADIKYYYGWNLFMAG-----------QLEEALQTINECLKL--DPTRAAAGITKLWITY  417 (553)
T ss_pred             HHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhc--CCCChhhHHHHHHHHH
Confidence            888888888887765   345667777888888888           888888888887765  3332 23333444566


Q ss_pred             hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 013010          299 KTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA  377 (451)
Q Consensus       299 ~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A  377 (451)
                      ..|++++|...+++..+.. .| +...+..+-.+|...|+.++|...+.++....  ..+....+.+...|+..|  ++|
T Consensus       418 ~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g--~~a  492 (553)
T PRK12370        418 YHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE--ITGLIAVNLLYAEYCQNS--ERA  492 (553)
T ss_pred             hccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc--chhHHHHHHHHHHHhccH--HHH
Confidence            6788888888888876553 24 34456667777778888888888888775542  222333444555566666  477


Q ss_pred             HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhch
Q 013010          378 RDFLAELVDG-GSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI  424 (451)
Q Consensus       378 ~~l~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~  424 (451)
                      ...++.+.+. ...+...-+..++  +.-.|+.+.+ ..++++.+.|-
T Consensus       493 ~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~~~~~-~~~~~~~~~~~  537 (553)
T PRK12370        493 LPTIREFLESEQRIDNNPGLLPLV--LVAHGEAIAE-KMWNKFKNEDN  537 (553)
T ss_pred             HHHHHHHHHHhhHhhcCchHHHHH--HHHHhhhHHH-HHHHHhhccch
Confidence            7767666543 2233322333333  4444555533 44466665543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.25  E-value=2.2e-08  Score=99.30  Aligned_cols=291  Identities=13%  Similarity=0.072  Sum_probs=210.3

Q ss_pred             hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      ..|+.++|.+++.++.++  .+.+...|..|...|-..|+.+++...+-.....+  | .|..-|..+-....+.|+++.
T Consensus       151 arg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p-~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN--P-KDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC--C-CChHHHHHHHHHHHhcccHHH
Confidence            348899999999999875  55677889999999999999999998885544443  3 255789999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH----HHHHHHHhcCCchhhhHH
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT----ILISSYCKYGMQTGCRKA  263 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~----~li~~~~~~g~~~~~~~~  263 (451)
                      |.-.|.+..+.. +++...+---...|-+.|+...|..-|.++.....  +.|..-+-    .++..+...+        
T Consensus       226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p--~~d~er~~d~i~~~~~~~~~~~--------  294 (895)
T KOG2076|consen  226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP--PVDIERIEDLIRRVAHYFITHN--------  294 (895)
T ss_pred             HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC--chhHHHHHHHHHHHHHHHHHhh--------
Confidence            999999999864 34555555556778899999999999999987741  12322233    3344555555        


Q ss_pred             HHHHHHHHHHHHHHHHh-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--------------------------
Q 013010          264 IRRRIWEANHLFRLMLF-KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK--------------------------  316 (451)
Q Consensus       264 ~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------------  316 (451)
                         +-+.|.+.++.... .+-..+...++.++..|.+...++.|......+...                          
T Consensus       295 ---~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~  371 (895)
T KOG2076|consen  295 ---ERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVG  371 (895)
T ss_pred             ---HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCC
Confidence               33566666655443 223445566777777777777777777666655541                          


Q ss_pred             -----------------------------------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh
Q 013010          317 -----------------------------------GCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS  359 (451)
Q Consensus       317 -----------------------------------g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~  359 (451)
                                                         .+.|  +...|.-+..+|.+.|++++|+.+|..+..... .-+..
T Consensus       372 ~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~-~~~~~  450 (895)
T KOG2076|consen  372 KELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREG-YQNAF  450 (895)
T ss_pred             CCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcc-ccchh
Confidence                                               1111  233345577788888999999999998887654 45567


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          360 SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       360 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      .|-.+..+|...|..++|.+.|...+..  .|+ ...--+|-..+.+.|+.++|.+.++.+.
T Consensus       451 vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~  510 (895)
T KOG2076|consen  451 VWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII  510 (895)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence            8888888888899999999999888764  233 3344556667888899999988888865

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.24  E-value=1.1e-07  Score=86.42  Aligned_cols=288  Identities=10%  Similarity=0.033  Sum_probs=221.3

Q ss_pred             hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      ..|++.+|+.....-.+. +-.| ...|..-..+--+.|+.+.+-.++.+..+...  +.+...+-+........|+++.
T Consensus        96 ~eG~~~qAEkl~~rnae~-~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~--~~~l~v~ltrarlll~~~d~~a  171 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEH-GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAG--DDTLAVELTRARLLLNRRDYPA  171 (400)
T ss_pred             hcCcHHHHHHHHHHhhhc-Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCC--CchHHHHHHHHHHHHhCCCchh
Confidence            367899999988876543 3222 33455555667788999999999999888632  3467777788888999999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC-----HHHHHHHHHHHHhcCCchhhhH
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD-----VYTYTILISSYCKYGMQTGCRK  262 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~-----~~~~~~li~~~~~~g~~~~~~~  262 (451)
                      |..-++++.+.+ +.+.........+|.+.|++.....++..|.+.|.-.++.     ..+|..+++-....+       
T Consensus       172 A~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~-------  243 (400)
T COG3071         172 ARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN-------  243 (400)
T ss_pred             HHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc-------
Confidence            999999998865 4567888999999999999999999999999998741111     135666666665554       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010          263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~  342 (451)
                          ..+.-...+++.. ...+-+...-.+++.-+..+|+.++|.++..+..+.+..|+    -...-.+.+.++...-+
T Consensus       244 ----~~~gL~~~W~~~p-r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~  314 (400)
T COG3071         244 ----GSEGLKTWWKNQP-RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLI  314 (400)
T ss_pred             ----cchHHHHHHHhcc-HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHH
Confidence                3333333444443 23455677778888899999999999999999998877666    22334556778888888


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +..+...+..  +-++..+.+|-..|.+.+.+.+|.+.|+...+  ..|+..+|+.+.+++.+.|+...+.++.++..
T Consensus       315 k~~e~~l~~h--~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         315 KAAEKWLKQH--PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHHHHHhC--CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            8888777655  34557888999999999999999999996665  56999999999999999999999988877655

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=7.9e-09  Score=104.04  Aligned_cols=214  Identities=12%  Similarity=0.032  Sum_probs=152.8

Q ss_pred             CCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHh---------cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010          183 GLVNEALATFYRMKQFRCRPD-VYAYNVVINALCR---------VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC  252 (451)
Q Consensus       183 g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~  252 (451)
                      +..++|.+.|++..+.  .|+ ...|..+..+|..         .+++++|...+++..+..   |-+..++..+...+.
T Consensus       275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld---P~~~~a~~~lg~~~~  349 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD---HNNPQALGLLGLINT  349 (553)
T ss_pred             HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHH
Confidence            4578999999998874  454 4555555444432         244788999999988775   347778888888888


Q ss_pred             hcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 013010          253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRY  331 (451)
Q Consensus       253 ~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~  331 (451)
                      ..|           ++++|...|++..+.+ +.+...+..+...+...|++++|...++...+..  |+ ...+..+...
T Consensus       350 ~~g-----------~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~~~~~~~  415 (553)
T PRK12370        350 IHS-----------EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAGITKLWI  415 (553)
T ss_pred             Hcc-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhHHHHHHH
Confidence            888           8889999999888763 3345667778888889999999999999988763  43 2333344445


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCC
Q 013010          332 YSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEP  409 (451)
Q Consensus       332 ~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~  409 (451)
                      +...|++++|...+++.....  .| +...+..+..++...|+.++|...+.++...  .|+ ....+.+...|+..|+ 
T Consensus       416 ~~~~g~~eeA~~~~~~~l~~~--~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~-  490 (553)
T PRK12370        416 TYYHTGIDDAIRLGDELRSQH--LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNSE-  490 (553)
T ss_pred             HHhccCHHHHHHHHHHHHHhc--cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccHH-
Confidence            666889999999999887654  34 3445667777788899999999999887543  233 3445556666777774 


Q ss_pred             chHHHHHHHHHH
Q 013010          410 SLLDDGLRKRIR  421 (451)
Q Consensus       410 ~~a~~~~~~~~~  421 (451)
                       .+...++++.+
T Consensus       491 -~a~~~l~~ll~  501 (553)
T PRK12370        491 -RALPTIREFLE  501 (553)
T ss_pred             -HHHHHHHHHHH
Confidence             56666666553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=4.6e-08  Score=90.22  Aligned_cols=284  Identities=11%  Similarity=0.055  Sum_probs=203.9

Q ss_pred             CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH---
Q 013010          111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE---  187 (451)
Q Consensus       111 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~---  187 (451)
                      ..+++..-.+..... |++.+...-+....+.-...++++|+.+|+++.+..+-...+..+|+.++  |.++.+-.-   
T Consensus       242 q~~e~~~k~e~l~~~-gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~skLs~L  318 (559)
T KOG1155|consen  242 QHEEALQKKERLSSV-GFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSKLSYL  318 (559)
T ss_pred             HHHHHHHHHHHHHhc-cCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHHHHHH
Confidence            345555555555443 56555555555555566678888888888888887544444677777776  444332221   


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR  267 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~  267 (451)
                      |..++.-   .  +--..|+.++.+-|.-.++.++|...|++..+.+   |-....|+.+-+-|....           +
T Consensus       319 A~~v~~i---d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN---p~~~~aWTLmGHEyvEmK-----------N  379 (559)
T KOG1155|consen  319 AQNVSNI---D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN---PKYLSAWTLMGHEYVEMK-----------N  379 (559)
T ss_pred             HHHHHHh---c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC---cchhHHHHHhhHHHHHhc-----------c
Confidence            2222221   1  2345778888888888889999999999988776   246678888888888888           7


Q ss_pred             HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       268 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      ...|.+-++...+-+ +.|-..|-.|-.+|.-.+...=|+-.|++...-  +| |...|.+|-++|.+.++.++|++.|.
T Consensus       380 t~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  380 THAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             cHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            788888888887653 557788888888888888888888888887765  55 78899999999999999999999999


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD----GGSVPR--EYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      .....+  ..+...+..|.+.|-+.++.++|...|..-++    .|..-+  .....-|..-+.+.+++++|........
T Consensus       457 rai~~~--dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  457 RAILLG--DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHhcc--ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            988876  45678888999999999999999888876654    233322  2333346677888899988866555444


Q ss_pred             H
Q 013010          421 R  421 (451)
Q Consensus       421 ~  421 (451)
                      +
T Consensus       535 ~  535 (559)
T KOG1155|consen  535 K  535 (559)
T ss_pred             c
Confidence            3

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=1.9e-08  Score=88.60  Aligned_cols=265  Identities=12%  Similarity=0.085  Sum_probs=199.2

Q ss_pred             cCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHH--hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH
Q 013010          101 AYRDPQKVTLGLNKATEFYHWVERFFDFFHNEM--TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV  178 (451)
Q Consensus       101 ~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~  178 (451)
                      +.++.+++.|.+++|+.+-..+.+.++.+.+..  ..-.|..-|...|-+|.|+.+|..+.+.+   ..-......|+..
T Consensus        74 tLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~---efa~~AlqqLl~I  150 (389)
T COG2956          74 TLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG---EFAEGALQQLLNI  150 (389)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHH
Confidence            345789999999999999999987766655433  34456777889999999999999998865   2245568899999


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010          179 LGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY  254 (451)
Q Consensus       179 ~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~  254 (451)
                      |-...+|++|+++-+++.+.+-++.    ...|.-+...+....+++.|..++.+..+..-   -.+.+--.+-+.+...
T Consensus       151 YQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~---~cvRAsi~lG~v~~~~  227 (389)
T COG2956         151 YQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADK---KCVRASIILGRVELAK  227 (389)
T ss_pred             HHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCc---cceehhhhhhHHHHhc
Confidence            9999999999999999988654332    23344555555667889999999999887762   2333444556677788


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV  334 (451)
Q Consensus       255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  334 (451)
                      |           +++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+....  ...-..+-..-..
T Consensus       228 g-----------~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g--~~~~l~l~~lie~  294 (389)
T COG2956         228 G-----------DYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG--ADAELMLADLIEL  294 (389)
T ss_pred             c-----------chHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC--ccHHHHHHHHHHH
Confidence            8           99999999999998865556678899999999999999999999998887433  3333444444444


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc---CCHHHHHHHHHHHHhC
Q 013010          335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA---GRVLEARDFLAELVDG  387 (451)
Q Consensus       335 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~  387 (451)
                      ....+.|...+.+-...   +|+...+..+|+.-...   |...+-..++..|+..
T Consensus       295 ~~G~~~Aq~~l~~Ql~r---~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge  347 (389)
T COG2956         295 QEGIDAAQAYLTRQLRR---KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE  347 (389)
T ss_pred             hhChHHHHHHHHHHHhh---CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence            55677777777665554   69999999999875433   4466667777788744

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.19  E-value=1.3e-08  Score=98.34  Aligned_cols=242  Identities=17%  Similarity=0.130  Sum_probs=173.1

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C--
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----R--  199 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--  199 (451)
                      ..++..+...|...|+++.|..++....+.     |.....=....+.+...|...+++++|..+|+++..-     |  
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            446666899999999999999999877654     2222122233455667888999999999999998762     2  


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHH
Q 013010          200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVY-TYTILISSYCKYGMQTGCRKAIRRRIWEANH  273 (451)
Q Consensus       200 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~-~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~  273 (451)
                      .+.-..+++.|-.+|++.|++++|...+++..+     .|.. .|.+. .++.+...++..+           ++++|..
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~-~~~v~~~l~~~~~~~~~~~-----------~~Eea~~  346 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGAS-HPEVAAQLSELAAILQSMN-----------EYEEAKK  346 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccC-hHHHHHHHHHHHHHHHHhc-----------chhHHHH
Confidence            222356678888899999999988887766532     1221 24443 3556677777777           6666666


Q ss_pred             HHHHHHhc---CCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-----C-CCC-CHHHHHHHHHHHHhcCCHH
Q 013010          274 LFRLMLFK---GFVP----DVVAYNCLIDGCCKTYRIERALELFDDMNKK-----G-CIP-NRVTYNSFIRYYSVVNEID  339 (451)
Q Consensus       274 ~~~~m~~~---~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~  339 (451)
                      +++...+.   -..+    -..+++.|-..|.+.|++++|.+++++....     | ..+ ....++.|-..|.+.+...
T Consensus       347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence            66544321   1112    2467999999999999999999999987643     1 122 3566788888999999999


Q ss_pred             HHHHHHHHHH----hcCCCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          340 KAIEMMRKMQ----NLNHGVPT-SSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       340 ~A~~~~~~m~----~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      +|.++|.+..    ..|...|+ ..+|..|...|...|++++|.++.+...
T Consensus       427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999988643    33322333 4589999999999999999999988776

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.17  E-value=1.4e-08  Score=98.08  Aligned_cols=254  Identities=17%  Similarity=0.149  Sum_probs=183.4

Q ss_pred             CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----CC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhh--
Q 013010          162 GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----RC-RPDVYA-YNVVINALCRVGNFNKARFLLEQMEL--  232 (451)
Q Consensus       162 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~--  232 (451)
                      +...+.-..+...|...|...|++++|..+++...+.     |. .|...+ .+.+...|...+++++|..+|+++..  
T Consensus       192 ~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~  271 (508)
T KOG1840|consen  192 GDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR  271 (508)
T ss_pred             ccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            3333334456777999999999999999999887663     21 233333 34467788899999999999998854  


Q ss_pred             ---CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHHHHHH
Q 013010          233 ---PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-VAYNCLIDGCCKTYRIERALE  308 (451)
Q Consensus       233 ---~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~  308 (451)
                         .|-.++.-..+++.|-..|++.|+++.+..    -.+.|.++++.... ...|.+ ..++.+...|+..+++++|..
T Consensus       272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~----~~e~Al~I~~~~~~-~~~~~v~~~l~~~~~~~~~~~~~Eea~~  346 (508)
T KOG1840|consen  272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEE----YCERALEIYEKLLG-ASHPEVAAQLSELAAILQSMNEYEEAKK  346 (508)
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHH----HHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence               243333445678888889999996666655    55666666666221 123333 346677778889999999999


Q ss_pred             HHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---C---CCChhhHHHHHHHHHHcCCHH
Q 013010          309 LFDDMNKK---GCIP----NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH---G---VPTSSSYTPIIHALCEAGRVL  375 (451)
Q Consensus       309 ~~~~m~~~---g~~p----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~---~p~~~~~~~li~~~~~~g~~~  375 (451)
                      +++...+.   -..+    -..+++.|-..|...|++++|.+++++..+...   .   .-....++.|-..|.+.+++.
T Consensus       347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~  426 (508)
T KOG1840|consen  347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE  426 (508)
T ss_pred             HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence            98875432   1122    357889999999999999999999998765431   1   122456788888999999999


Q ss_pred             HHHHHHHHHH----hCCCC-CC-HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          376 EARDFLAELV----DGGSV-PR-EYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       376 ~A~~l~~~m~----~~g~~-p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +|.++|.+-.    ..|.. |+ ..+|..|...|.+.|+++.|.++.+..+
T Consensus       427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999987654    33322 23 5789999999999999999988888776

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=3e-07  Score=84.97  Aligned_cols=318  Identities=13%  Similarity=0.061  Sum_probs=221.5

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC-------------CC-----------CCccHHhHH--HHHHHHH
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-------------NG-----------ELVTTSSVT--CLIKVLG  180 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-------------~~-----------~~~~~~~~~--~li~~~~  180 (451)
                      +...|...+-.....+-+.|....|.+.|......-             ..           .+.+..-..  -+..+|-
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~  238 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQ  238 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHH
Confidence            344455555555556677788888888876665531             00           000000000  1223444


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC----
Q 013010          181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM----  256 (451)
Q Consensus       181 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~----  256 (451)
                      ...+.+++.+=.+.+.+.|+.-+...-+....+.....++|+|+.+|+++.+...----|..+|+.++-.-.....    
T Consensus       239 el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~L  318 (559)
T KOG1155|consen  239 ELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYL  318 (559)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence            4557777888888888888765555555555566678899999999999988741101266777766543222110    


Q ss_pred             -----------chhhh-----HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010          257 -----------QTGCR-----KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP  320 (451)
Q Consensus       257 -----------~~~~~-----~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  320 (451)
                                 ++.|.     -+++++.++|...|++..+.+ +-....|+.+-.-|....+...|.+-++...+.. +.
T Consensus       319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~  396 (559)
T KOG1155|consen  319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PR  396 (559)
T ss_pred             HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-ch
Confidence                       11110     123468899999999988753 2345677878888999999999999999998873 44


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVC  400 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li  400 (451)
                      |-..|-.|-++|.-.+...=|+-.|++..+..  +-|...|.+|-..|.+.++.++|.+.|......|-. +...|..|.
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La  473 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK--PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA  473 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence            88999999999999999999999999998865  678999999999999999999999999999987644 667899999


Q ss_pred             HHHHhcCCCchHHHHHHHHHHhchHH-HH-HHhhchhcccchhhhhcccCCC
Q 013010          401 DALNAAEEPSLLDDGLRKRIRDGIEY-RF-RQVMKVKPIMKHKELLKCGEID  450 (451)
Q Consensus       401 ~~~~~~g~~~~a~~~~~~~~~~g~~~-~~-~~~~~~~~~~~~~~~~k~g~~~  450 (451)
                      +.+-+-++.++|...+.+.++.-... .. +...+.+..+ ...+.|+++.+
T Consensus       474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL-A~~f~k~~~~~  524 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL-AEYFKKMKDFD  524 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH-HHHHHhhcchH
Confidence            99999999999999999888533110 01 1122222333 35566777654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.13  E-value=6e-08  Score=89.14  Aligned_cols=290  Identities=12%  Similarity=0.005  Sum_probs=203.0

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHH-HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKE-MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL  184 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~  184 (451)
                      +.+.++++.|++++..+.++-+-..+...-|. .+..+.-..++..|.+.-+......   ..+......--+....+|+
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d---ryn~~a~~nkgn~~f~ngd  505 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID---RYNAAALTNKGNIAFANGD  505 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc---ccCHHHhhcCCceeeecCc
Confidence            45577888888888887765222222222221 1222222347777777776655443   1122222222233345799


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI  264 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~  264 (451)
                      +++|.+.|++....+-.-....||+=+ .+-..|++++|++.|-.+...-   .-+..+...+.+.|-...         
T Consensus       506 ~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il---~nn~evl~qianiye~le---------  572 (840)
T KOG2003|consen  506 LDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL---LNNAEVLVQIANIYELLE---------  572 (840)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHhh---------
Confidence            999999999998754333344455433 3567899999999998876432   246777777888887766         


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                        +..+|.+++-+... -++-|....+.|...|-+.|+-..|++.+-+--.- ++.+..|...|-..|....-+++|+.+
T Consensus       573 --d~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y  648 (840)
T KOG2003|consen  573 --DPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY  648 (840)
T ss_pred             --CHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence              67788888765543 24557788999999999999999998876553322 344788889999999999999999999


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHH-HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          345 MRKMQNLNHGVPTSSSYTPIIHAL-CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       345 ~~~m~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      |++..-.   .|+..-|..+|..| .+.|++.+|+++|+.... .++-|.....-|++.+...|..+ +.+.-++..
T Consensus       649 ~ekaali---qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl~d-~key~~kle  720 (840)
T KOG2003|consen  649 FEKAALI---QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGLKD-AKEYADKLE  720 (840)
T ss_pred             HHHHHhc---CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccchh-HHHHHHHHH
Confidence            9987542   79999999998765 567999999999998754 47778889999999999998776 666655554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.11  E-value=2.4e-07  Score=90.77  Aligned_cols=288  Identities=15%  Similarity=0.107  Sum_probs=207.6

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc---
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE---  182 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~---  182 (451)
                      ....|+.++|++.++.-..  .+......+......+.+.|+.++|..++..+.+++..   +..-|..+..+.+-.   
T Consensus        14 l~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd---n~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   14 LEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD---NYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHhhhccc
Confidence            3456889999999988653  34444566777888999999999999999999999733   554566666666332   


Q ss_pred             --CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchh
Q 013010          183 --GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF-NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG  259 (451)
Q Consensus       183 --g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~  259 (451)
                        .+.+...++|+++...-  |.......+.-.+.....+ ..+..++..+...|+   |+  +|+.|-..|....    
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~Kgv---Ps--lF~~lk~Ly~d~~----  157 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGV---PS--LFSNLKPLYKDPE----  157 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCC---ch--HHHHHHHHHcChh----
Confidence              35788899999987743  5444443333223322233 345666677788885   43  5677777676544    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhc----C----------CCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H
Q 013010          260 CRKAIRRRIWEANHLFRLMLFK----G----------FVPDV--VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-R  322 (451)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~m~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~  322 (451)
                             +..-..+++......    +          -.|+.  .++..+...|-..|++++|.+.+++..+.  .|+ +
T Consensus       158 -------K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~  228 (517)
T PF12569_consen  158 -------KAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLV  228 (517)
T ss_pred             -------HHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcH
Confidence                   444444555444321    1          12333  34566677788999999999999998887  465 7


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH------
Q 013010          323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY------  396 (451)
Q Consensus       323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~------  396 (451)
                      ..|..-...|-+.|++++|.+.++..+...  .-|...=+-.+..+.++|++++|.+++...-..+..|-...+      
T Consensus       229 ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W  306 (517)
T PF12569_consen  229 ELYMTKARILKHAGDLKEAAEAMDEARELD--LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW  306 (517)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhCC--hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence            788888899999999999999999999988  578888889999999999999999999988876654433221      


Q ss_pred             --HHHHHHHHhcCCCchHHHHHHHHH
Q 013010          397 --KLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       397 --~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                        .-...+|.+.|++..|...++...
T Consensus       307 f~~e~a~a~~r~~~~~~ALk~~~~v~  332 (517)
T PF12569_consen  307 FETECAEAYLRQGDYGLALKRFHAVL  332 (517)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence              445788999999998887777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.11  E-value=2.1e-08  Score=96.47  Aligned_cols=264  Identities=14%  Similarity=0.066  Sum_probs=196.9

Q ss_pred             CCchhhhcCHHHHHHHHHHHhhcCCC-CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010          103 RDPQKVTLGLNKATEFYHWVERFFDF-FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE  181 (451)
Q Consensus       103 ~~~~~~~~~~~~A~~~f~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~  181 (451)
                      +.+|-..++.++|..+|+.+.+.... ..+..+|.+.+--+-+   .-+.--+-+++.+..   +.+..+|.++-++|.-
T Consensus       360 GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~Laq~Li~~~---~~sPesWca~GNcfSL  433 (638)
T KOG1126|consen  360 GRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYLAQDLIDTD---PNSPESWCALGNCFSL  433 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHHHHHHHhhC---CCCcHHHHHhcchhhh
Confidence            34465677789999999999875332 2356677766644332   222222223344433   2256789999999999


Q ss_pred             cCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010          182 EGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC  260 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~  260 (451)
                      .++.+.|++.|++..+.  .| ...+|+.+..-+.....+|.|...|.......   +-+-.+|.-|.-.|.+.+     
T Consensus       434 Qkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~---~rhYnAwYGlG~vy~Kqe-----  503 (638)
T KOG1126|consen  434 QKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD---PRHYNAWYGLGTVYLKQE-----  503 (638)
T ss_pred             hhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC---chhhHHHHhhhhheeccc-----
Confidence            99999999999999984  45 68999999888999999999999999877443   124455666777899999     


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 013010          261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK  340 (451)
Q Consensus       261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  340 (451)
                            +++.|+-.|+...+-+ +-+.+....+...+-+.|+.|+|++++++.....-+ |+.+--.-...+...++.++
T Consensus       504 ------k~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  504 ------KLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             ------hhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHH
Confidence                  9999999999888653 335667777778888999999999999998876422 44444444566677899999


Q ss_pred             HHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010          341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR  392 (451)
Q Consensus       341 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  392 (451)
                      |+..++++++.-  +-+...|..+...|.+.|+.+.|+.-|.-+.+..-++.
T Consensus       576 al~~LEeLk~~v--P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  576 ALQELEELKELV--PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHHHHHHHHhC--cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            999999999853  34556777888899999999999998888876554443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.09  E-value=2.9e-07  Score=91.57  Aligned_cols=321  Identities=14%  Similarity=0.101  Sum_probs=227.1

Q ss_pred             cccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH
Q 013010           99 PAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV  178 (451)
Q Consensus        99 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~  178 (451)
                      +...+..|...|+..+++.++-...  +-.+.|...|..+.....+.|+++.|.-.|.+..+....   +...+--=+..
T Consensus       176 y~tL~~IyEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~---n~~~~~ers~L  250 (895)
T KOG2076|consen  176 YYTLGEIYEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS---NWELIYERSSL  250 (895)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc---chHHHHHHHHH
Confidence            4444566888899999999855544  245557788999999999999999999999999988632   44444455677


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHHHH----HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010          179 LGEEGLVNEALATFYRMKQFRCRPDVYAY----NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY  254 (451)
Q Consensus       179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~  254 (451)
                      |-+.|+...|..-|.++.+..-+.|..-+    -.++..+...++-+.|.+.++.....+.. ..+...+++++..|.+.
T Consensus       251 ~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~-~~~~ed~ni~ael~l~~  329 (895)
T KOG2076|consen  251 YQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD-EASLEDLNILAELFLKN  329 (895)
T ss_pred             HHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc-cccccHHHHHHHHHHHh
Confidence            88899999999999999885422222222    23455566667778888888777663221 23444555666666555


Q ss_pred             CCchhhhHHHH--------------------------------------------------HHHHHHHHHHHHHHhcCC-
Q 013010          255 GMQTGCRKAIR--------------------------------------------------RRIWEANHLFRLMLFKGF-  283 (451)
Q Consensus       255 g~~~~~~~~~~--------------------------------------------------~~~~~a~~~~~~m~~~~~-  283 (451)
                      ...+.+...+.                                                  +..+....+.....+..+ 
T Consensus       330 ~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~  409 (895)
T KOG2076|consen  330 KQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVW  409 (895)
T ss_pred             HHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCC
Confidence            53333322221                                                  011222223333333332 


Q ss_pred             -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHH
Q 013010          284 -VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT  362 (451)
Q Consensus       284 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~  362 (451)
                       .-+...|--+..+|...|++.+|..+|..+......-+...|-.+-.+|...|..+.|.+.|+......  +-+...-.
T Consensus       410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~--p~~~D~Ri  487 (895)
T KOG2076|consen  410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA--PDNLDARI  487 (895)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCchhhhh
Confidence             224556778889999999999999999999987555567889999999999999999999999999865  34445555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHH
Q 013010          363 PIIHALCEAGRVLEARDFLAELV--------DGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR  427 (451)
Q Consensus       363 ~li~~~~~~g~~~~A~~l~~~m~--------~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~  427 (451)
                      .|-..+-+.|+.++|.+.+..+.        ..+..|+....-...+.+...|+.+........++...+.-+
T Consensus       488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~  560 (895)
T KOG2076|consen  488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKR  560 (895)
T ss_pred             hHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            66677899999999999999854        345677777777888899999999988888888886555444

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.02  E-value=1.4e-08  Score=100.40  Aligned_cols=242  Identities=16%  Similarity=0.118  Sum_probs=169.5

Q ss_pred             HHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010          153 DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL  232 (451)
Q Consensus       153 ~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  232 (451)
                      .++..+...|+.|  +..||..+|.-||..|+++.|- +|.-|.-...+.+...++.++.+...+++.+.+.        
T Consensus        11 nfla~~e~~gi~P--nRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILP--NRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------   79 (1088)
T ss_pred             hHHHHHHHhcCCC--chhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence            4566777888876  7789999999999999999998 9999988888888999999999999999877765        


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH----hcCCCCCHhhH--------------HHHH
Q 013010          233 PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML----FKGFVPDVVAY--------------NCLI  294 (451)
Q Consensus       233 ~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~----~~~~~~~~~~~--------------~~li  294 (451)
                         .  |...||++|..+|...|+..        .++..++.+....    ..|+-.....+              ...+
T Consensus        80 ---e--p~aDtyt~Ll~ayr~hGDli--------~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i  146 (1088)
T KOG4318|consen   80 ---E--PLADTYTNLLKAYRIHGDLI--------LFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI  146 (1088)
T ss_pred             ---C--CchhHHHHHHHHHHhccchH--------HHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH
Confidence               2  78889999999999999765        3444444332222    22321111111              2233


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010          295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV  374 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~  374 (451)
                      .-....|-++.+.+++..+-....   ..++..+++-+....  .-..++.+..+. ....|+..+|.++++.-.-+|+.
T Consensus       147 lllv~eglwaqllkll~~~Pvsa~---~~p~~vfLrqnv~~n--tpvekLl~~cks-l~e~~~s~~l~a~l~~alaag~~  220 (1088)
T KOG4318|consen  147 LLLVLEGLWAQLLKLLAKVPVSAW---NAPFQVFLRQNVVDN--TPVEKLLNMCKS-LVEAPTSETLHAVLKRALAAGDV  220 (1088)
T ss_pred             HHHHHHHHHHHHHHHHhhCCcccc---cchHHHHHHHhccCC--chHHHHHHHHHH-hhcCCChHHHHHHHHHHHhcCch
Confidence            333444555555555544422110   011112344333322  223344443333 22269999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHH
Q 013010          375 LEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYR  427 (451)
Q Consensus       375 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~  427 (451)
                      +.|..++.+|.+.|+..+.+-|-.|+-+   .++...+..+++.|-..|+.|.
T Consensus       221 d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~  270 (1088)
T KOG4318|consen  221 DGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG  270 (1088)
T ss_pred             hhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCC
Confidence            9999999999999999999988888766   8888888888888889988765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.99  E-value=5.6e-07  Score=88.21  Aligned_cols=259  Identities=16%  Similarity=0.138  Sum_probs=186.4

Q ss_pred             HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH-HHHHHHhc
Q 013010          139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV-VINALCRV  217 (451)
Q Consensus       139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~  217 (451)
                      ...+...|++++|++.++.-...-+.   ...........+.+.|+.++|..+|..+.+.+  |+-..|-. +..+..-.
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~D---k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILD---KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence            34567889999999999876555322   34566778889999999999999999999976  66665554 44444222


Q ss_pred             -----CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH-HHHHHHHHHHhcCCCCCHhhHH
Q 013010          218 -----GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW-EANHLFRLMLFKGFVPDVVAYN  291 (451)
Q Consensus       218 -----g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~  291 (451)
                           .+.+....+|+++...-    |...+...+.-.+.. |+          .+. .+..++..+...|++   .+|+
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~y----p~s~~~~rl~L~~~~-g~----------~F~~~~~~yl~~~l~KgvP---slF~  147 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKY----PRSDAPRRLPLDFLE-GD----------EFKERLDEYLRPQLRKGVP---SLFS  147 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhC----ccccchhHhhcccCC-HH----------HHHHHHHHHHHHHHhcCCc---hHHH
Confidence                 25677888899887664    443333333222222 21          333 455666777778854   4566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 013010          292 CLIDGCCKTYRIERALELFDDMNKK----G----------CIPNRV--TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV  355 (451)
Q Consensus       292 ~li~~~~~~g~~~~a~~~~~~m~~~----g----------~~p~~~--t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  355 (451)
                      .|-..|......+-..+++......    |          -.|+..  ++..+...|-..|++++|++++++..++.  +
T Consensus       148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--P  225 (517)
T PF12569_consen  148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--P  225 (517)
T ss_pred             HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--C
Confidence            6777777666666666666665432    1          134443  44566778889999999999999999875  3


Q ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010          356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       356 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g  423 (451)
                      ..+..|..-.+.|-+.|++.+|.+.++...+... -|...-+-....+.++|+.++|.+.+....+.+
T Consensus       226 t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  226 TLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTRED  292 (517)
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCC
Confidence            4467888888999999999999999999887654 377888888999999999999999999888766

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.99  E-value=2.8e-06  Score=77.39  Aligned_cols=256  Identities=11%  Similarity=0.031  Sum_probs=202.2

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL  184 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~  184 (451)
                      +....|+.++|-.+..+..+. --.++...+-+........|+++.|..-+.++.+.+..   +..+......+|.+.|+
T Consensus       127 AA~qrgd~~~an~yL~eaae~-~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr---~~~vlrLa~r~y~~~g~  202 (400)
T COG3071         127 AAQQRGDEDRANRYLAEAAEL-AGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR---HPEVLRLALRAYIRLGA  202 (400)
T ss_pred             HHHhcccHHHHHHHHHHHhcc-CCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC---ChHHHHHHHHHHHHhcc
Confidence            355578888999988888754 22445666777788889999999999999999988633   56689999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCc
Q 013010          185 VNEALATFYRMKQFRCRPDV-------YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ  257 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~  257 (451)
                      +.....++..|.+.|.--|.       .+|+.++.-....+..+.-...+++....-   .-+...-.+++.-+.+.|  
T Consensus       203 ~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~l---r~~p~l~~~~a~~li~l~--  277 (400)
T COG3071         203 WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKL---RNDPELVVAYAERLIRLG--  277 (400)
T ss_pred             HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHh---hcChhHHHHHHHHHHHcC--
Confidence            99999999999999865543       567888887777777777677777765442   245667778889999999  


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcC
Q 013010          258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK-KGCIPNRVTYNSFIRYYSVVN  336 (451)
Q Consensus       258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g  336 (451)
                               +.++|.++..+..+++..|+.    ...-.+.+-++.+.-.+..+.-.+ .+..  +..+..|-..|.+.+
T Consensus       278 ---------~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~  342 (400)
T COG3071         278 ---------DHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNK  342 (400)
T ss_pred             ---------ChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhh
Confidence                     889999999998888766652    223345667777777777766443 4444  477888888999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       337 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      .+.+|.+.|+...+.   .|+..+|+.+-++|.+.|+..+|.+..++-...
T Consensus       343 ~w~kA~~~leaAl~~---~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         343 LWGKASEALEAALKL---RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHHHhc---CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            999999999977664   699999999999999999999999999887643

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.93  E-value=2e-06  Score=79.51  Aligned_cols=226  Identities=13%  Similarity=0.025  Sum_probs=138.4

Q ss_pred             CHHHHHHHHHHHhhcCCCCCC--HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          111 GLNKATEFYHWVERFFDFFHN--EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       111 ~~~~A~~~f~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      ..+.++.-+..+.......|+  ...|..+...+.+.|+.++|...|++..+....   +...|+.+...+...|++++|
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~---~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD---MADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHCCCHHHH
Confidence            356667766666643223332  345777777888888888888888888776532   566788888888888888888


Q ss_pred             HHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010          189 LATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR  267 (451)
Q Consensus       189 ~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~  267 (451)
                      .+.|+...+.  .| +..+|..+..++...|++++|.+.|+...+..    |+..........+...+           +
T Consensus       118 ~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~----P~~~~~~~~~~l~~~~~-----------~  180 (296)
T PRK11189        118 YEAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD----PNDPYRALWLYLAESKL-----------D  180 (296)
T ss_pred             HHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHccC-----------C
Confidence            8888888764  34 36677777777888888888888888877664    43221111111223334           6


Q ss_pred             HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCCHHHH
Q 013010          268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK---GC--IP-NRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       268 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p-~~~t~~~li~~~~~~g~~~~A  341 (451)
                      .++|...|.+.... ..++...+ .  ......|+...+ +.+..+.+.   ..  .| ...+|..+-..|.+.|++++|
T Consensus       181 ~~~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A  255 (296)
T PRK11189        181 PKQAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA  255 (296)
T ss_pred             HHHHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            77888888654432 12332211 2  222334555443 344444322   11  11 234677777777778888888


Q ss_pred             HHHHHHHHhcCCCCCChhhHHH
Q 013010          342 IEMMRKMQNLNHGVPTSSSYTP  363 (451)
Q Consensus       342 ~~~~~~m~~~~~~~p~~~~~~~  363 (451)
                      ...|++..+.+  +||-.-+..
T Consensus       256 ~~~~~~Al~~~--~~~~~e~~~  275 (296)
T PRK11189        256 AALFKLALANN--VYNFVEHRY  275 (296)
T ss_pred             HHHHHHHHHhC--CchHHHHHH
Confidence            88887777655  445444443

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.91  E-value=2.7e-06  Score=78.65  Aligned_cols=224  Identities=13%  Similarity=0.033  Sum_probs=156.8

Q ss_pred             HccCChhHHHHHHHHHHHcCC-CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010          143 ARGNNVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN  221 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  221 (451)
                      ...+..+.+..-+.++..... .+......|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|+++
T Consensus        37 ~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~  115 (296)
T PRK11189         37 QPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFD  115 (296)
T ss_pred             CCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHH
Confidence            334566778888888776542 222235568888888999999999999999998854 335789999999999999999


Q ss_pred             HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010          222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY  301 (451)
Q Consensus       222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  301 (451)
                      +|...|+...+..   |-+..+|..+...+...|           ++++|.+.|+...+.  .|+..........+...+
T Consensus       116 ~A~~~~~~Al~l~---P~~~~a~~~lg~~l~~~g-----------~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~  179 (296)
T PRK11189        116 AAYEAFDSVLELD---PTYNYAYLNRGIALYYGG-----------RYELAQDDLLAFYQD--DPNDPYRALWLYLAESKL  179 (296)
T ss_pred             HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccC
Confidence            9999999998765   235678888888899999           899999999988865  454332222223344567


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCChhhHHHHHHHHHHcCCHHH
Q 013010          302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-----VPTSSSYTPIIHALCEAGRVLE  376 (451)
Q Consensus       302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-----~p~~~~~~~li~~~~~~g~~~~  376 (451)
                      +.++|.+.+....... .|+...+ .+  .+...|+.+.+ +.+..+.+....     ......|..+-..+.+.|++++
T Consensus       180 ~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~  254 (296)
T PRK11189        180 DPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDE  254 (296)
T ss_pred             CHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence            8999999997755332 3332222 22  22335555444 345555432110     1234578888899999999999


Q ss_pred             HHHHHHHHHhCC
Q 013010          377 ARDFLAELVDGG  388 (451)
Q Consensus       377 A~~l~~~m~~~g  388 (451)
                      |...|++..+.+
T Consensus       255 A~~~~~~Al~~~  266 (296)
T PRK11189        255 AAALFKLALANN  266 (296)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=1.8e-07  Score=82.76  Aligned_cols=227  Identities=12%  Similarity=0.040  Sum_probs=145.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH-HHHHHH
Q 013010          173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT-ILISSY  251 (451)
Q Consensus       173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~-~li~~~  251 (451)
                      +.+-++|.+.|-+.+|.+.|+...+.  .|-+.||-.|-++|.+..+.+.|+.++.+-.+.-    |-.+||. -+.+.+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f----P~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF----PFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC----CchhhhhhhhHHHH
Confidence            45667777777777777777766653  4566677777777777777777777777666543    4444443 345555


Q ss_pred             HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010          252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY  331 (451)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  331 (451)
                      -..+           +.++|.++++...+.. +.++....++..+|.-.++++-|...|+.+.+.|+. ++..|+.+--+
T Consensus       301 eam~-----------~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLC  367 (478)
T KOG1129|consen  301 EAME-----------QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLC  367 (478)
T ss_pred             HHHH-----------hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHH
Confidence            5555           6677777777766542 335555566666677777777777777777777764 66777777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010          332 YSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP  409 (451)
Q Consensus       332 ~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~  409 (451)
                      |.-.+++|-++.-|.+....-. .|+  ...|-.+-......|++.-|.+.|+-....+- -....++.|.-.-.+.|+.
T Consensus       368 C~yaqQ~D~~L~sf~RAlstat-~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i  445 (478)
T KOG1129|consen  368 CLYAQQIDLVLPSFQRALSTAT-QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDI  445 (478)
T ss_pred             HHhhcchhhhHHHHHHHHhhcc-CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCch
Confidence            7777777777777776655432 233  23555555556667777777777766554432 2345666666666777777


Q ss_pred             chHHHHHHHHH
Q 013010          410 SLLDDGLRKRI  420 (451)
Q Consensus       410 ~~a~~~~~~~~  420 (451)
                      +.|...+....
T Consensus       446 ~~Arsll~~A~  456 (478)
T KOG1129|consen  446 LGARSLLNAAK  456 (478)
T ss_pred             HHHHHHHHHhh
Confidence            77766665444

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=1.3e-05  Score=74.62  Aligned_cols=117  Identities=12%  Similarity=0.124  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHH
Q 013010          301 YRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF  380 (451)
Q Consensus       301 g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l  380 (451)
                      .++..|.+++...  -|.-|-..+|...|..=.+.+++|.+..+++...+-+  +-+..+|......=...|+.+.|..+
T Consensus       418 ~~l~~ARkiLG~A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe~c~~W~kyaElE~~LgdtdRaRai  493 (677)
T KOG1915|consen  418 LNLTGARKILGNA--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PENCYAWSKYAELETSLGDTDRARAI  493 (677)
T ss_pred             cccHHHHHHHHHH--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHhhhHHHHHHH
Confidence            3444444444432  2446677777777777777778888888888877755  45666776666666667888888888


Q ss_pred             HHHHHhCC-CCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          381 LAELVDGG-SVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       381 ~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      |.-.++.. .......|.+-|+-=..+|.++.+..+++..++
T Consensus       494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~  535 (677)
T KOG1915|consen  494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLD  535 (677)
T ss_pred             HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHH
Confidence            87777542 333455666777777778888888777777763

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=4e-06  Score=77.39  Aligned_cols=309  Identities=11%  Similarity=0.070  Sum_probs=180.6

Q ss_pred             CCCchhhhcCHHHHHHHHHHHhhc-CCCCCC--HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH
Q 013010          102 YRDPQKVTLGLNKATEFYHWVERF-FDFFHN--EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV  178 (451)
Q Consensus       102 ~~~~~~~~~~~~~A~~~f~~~~~~-~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~  178 (451)
                      .++.+-+...+.+|+.+|+....+ +.+..+  ....+.+...+.+.|+++.|..-|+...+..    |+..+--.|+-+
T Consensus       243 igni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~----pn~~a~~nl~i~  318 (840)
T KOG2003|consen  243 IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA----PNFIAALNLIIC  318 (840)
T ss_pred             ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC----ccHHhhhhhhhh
Confidence            345555566788999999887754 111111  3356666667889999999999999988774    243333445555


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCC------------CHHHHH--------------------------------------
Q 013010          179 LGEEGLVNEALATFYRMKQFRCRP------------DVYAYN--------------------------------------  208 (451)
Q Consensus       179 ~~~~g~~~~A~~~~~~m~~~g~~p------------~~~~~~--------------------------------------  208 (451)
                      +..-|+.++..+.|..|..--..|            +....|                                      
T Consensus       319 ~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~f  398 (840)
T KOG2003|consen  319 AFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDF  398 (840)
T ss_pred             heecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccch
Confidence            666788899888998887632222            111110                                      


Q ss_pred             -------------------------HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc-CC-chhhh
Q 013010          209 -------------------------VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY-GM-QTGCR  261 (451)
Q Consensus       209 -------------------------~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~-g~-~~~~~  261 (451)
                                               .-...|.+.|+++.|.+++.-..+...+  .-...-+.|-..+.-. |. ...+.
T Consensus       399 a~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk--~~saaa~nl~~l~flqggk~~~~aq  476 (840)
T KOG2003|consen  399 AAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNK--TASAAANNLCALRFLQGGKDFADAQ  476 (840)
T ss_pred             hcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccch--hhHHHhhhhHHHHHHhcccchhHHH
Confidence                                     0122356678888888888777665433  1112222222222221 21 01110


Q ss_pred             H-------H----------------HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 013010          262 K-------A----------------IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK---  315 (451)
Q Consensus       262 ~-------~----------------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---  315 (451)
                      .       .                ..+++++|.+.|++.....-.-....||+=+ .+-..|++++|++.|-.+..   
T Consensus       477 qyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~  555 (840)
T KOG2003|consen  477 QYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILL  555 (840)
T ss_pred             HHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHH
Confidence            0       0                0157777887777776543222223333222 23455666666665544322   


Q ss_pred             -----------------------------CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010          316 -----------------------------KGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII  365 (451)
Q Consensus       316 -----------------------------~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  365 (451)
                                                   ..+.| |+....-|-..|-+.|+-..|.+..-+--+..  +-+..+..-|.
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryf--p~nie~iewl~  633 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--PCNIETIEWLA  633 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccccc--CcchHHHHHHH
Confidence                                         11233 55566666666666666666666554433321  45566666666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCCchHHHHHHHHHH
Q 013010          366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCD-ALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       366 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~a~~~~~~~~~  421 (451)
                      ..|....-+++|+.+|++..  -+.|+..-|..++. ++.+.|++..|.+.+++.-+
T Consensus       634 ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr  688 (840)
T KOG2003|consen  634 AYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR  688 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            66666667777888777643  37899999988765 55788999999888876543

>PF12854 PPR_1: PPR repeat

Probab=98.87  E-value=3.6e-09  Score=62.25  Aligned_cols=34  Identities=35%  Similarity=0.773  Sum_probs=30.0

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 013010          198 FRCRPDVYAYNVVINALCRVGNFNKARFLLEQME  231 (451)
Q Consensus       198 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  231 (451)
                      +|+.||..|||+||++||+.|++++|.++|++|+
T Consensus         1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            4788999999999999999999999999999884

>PF12854 PPR_1: PPR repeat

Probab=98.83  E-value=4.9e-09  Score=61.68  Aligned_cols=32  Identities=63%  Similarity=1.107  Sum_probs=16.3

Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010          282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDM  313 (451)
Q Consensus       282 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  313 (451)
                      |+.||..|||+||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44455555555555555555555555555544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.79  E-value=1.2e-06  Score=77.72  Aligned_cols=229  Identities=14%  Similarity=0.054  Sum_probs=189.0

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHH
Q 013010          136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN-VVINAL  214 (451)
Q Consensus       136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~  214 (451)
                      +.+...|.+.|.+.+|.+.++.-....    +-..||-.|-+.|.+..+++.|+.+|.+-.+.  .|-.+||- -+...+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~----~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF----PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC----CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence            457788999999999999998877763    24557999999999999999999999998873  46556654 455677


Q ss_pred             HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 013010          215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI  294 (451)
Q Consensus       215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  294 (451)
                      -..++.++|.++|+...+..   +.++.....+..+|.-.+           +.+-|+.+++++.+.|+. +...|+.+-
T Consensus       301 eam~~~~~a~~lYk~vlk~~---~~nvEaiAcia~~yfY~~-----------~PE~AlryYRRiLqmG~~-speLf~Nig  365 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLH---PINVEAIACIAVGYFYDN-----------NPEMALRYYRRILQMGAQ-SPELFCNIG  365 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcC---CccceeeeeeeeccccCC-----------ChHHHHHHHHHHHHhcCC-ChHHHhhHH
Confidence            77899999999999998875   357777777778888777           889999999999999865 678888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 013010          295 DGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG  372 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g  372 (451)
                      -+|.-.+++|-++--|......--.|+  ...|-.|-......|++..|.+.|+-....+  .-+...++.|.-.-.+.|
T Consensus       366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d--~~h~ealnNLavL~~r~G  443 (478)
T KOG1129|consen  366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD--AQHGEALNNLAVLAARSG  443 (478)
T ss_pred             HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC--cchHHHHHhHHHHHhhcC
Confidence            888899999999999998877655554  3455556666677899999999999988876  567789999988889999


Q ss_pred             CHHHHHHHHHHHHhC
Q 013010          373 RVLEARDFLAELVDG  387 (451)
Q Consensus       373 ~~~~A~~l~~~m~~~  387 (451)
                      ++++|..++....+.
T Consensus       444 ~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  444 DILGARSLLNAAKSV  458 (478)
T ss_pred             chHHHHHHHHHhhhh
Confidence            999999999887653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.79  E-value=3.1e-06  Score=85.09  Aligned_cols=286  Identities=13%  Similarity=0.075  Sum_probs=205.5

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCC--CCCCHH-------hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHH
Q 013010          106 QKVTLGLNKATEFYHWVERFFD--FFHNEM-------TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLI  176 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~--~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li  176 (451)
                      +-..|.+.+|.+.|........  ..++..       -|| +...+-..++++.|.+++..+.+..+.   =...|--+.
T Consensus       462 hf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~---YId~ylRl~  537 (1018)
T KOG2002|consen  462 HFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPG---YIDAYLRLG  537 (1018)
T ss_pred             HHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCch---hHHHHHHhh
Confidence            3346778899999888765411  223331       344 555566678999999999999988532   122343444


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010          177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM  256 (451)
Q Consensus       177 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~  256 (451)
                      ......++..+|...+....+.+ ..+...+..+.+.+.+..++..|.+-|....+.-.. .+|.++.-.|.+.|.+.-.
T Consensus       538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~-~~D~YsliaLGN~~~~~l~  615 (1018)
T KOG2002|consen  538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTST-KTDAYSLIALGNVYIQALH  615 (1018)
T ss_pred             HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhcc-CCchhHHHHhhHHHHHHhc
Confidence            33334578889999999888743 456677777777888888888888877766655443 3677777777776654432


Q ss_pred             chhh-hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010          257 QTGC-RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV  335 (451)
Q Consensus       257 ~~~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  335 (451)
                      .... .+.-++..+.|+++|.+..... +-|...-|-+--.++..|++.+|..+|.+..+... -+..+|-.+..+|...
T Consensus       616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~  693 (1018)
T KOG2002|consen  616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQ  693 (1018)
T ss_pred             ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHH
Confidence            2111 1222347889999999888753 45777778888889999999999999999998754 2456788899999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010          336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV  399 (451)
Q Consensus       336 g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  399 (451)
                      |++..|+++|+...+.....-+....+.|.+++.+.|.+.+|.+.+.........-....||..
T Consensus       694 ~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a  757 (1018)
T KOG2002|consen  694 GQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLA  757 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHH
Confidence            9999999999987776654678889999999999999999999988776654443334445543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.5e-05  Score=75.82  Aligned_cols=271  Identities=14%  Similarity=0.008  Sum_probs=188.9

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      .+++++..++++.+.+.  .++....+..=|..+...|+..+-..+=.++++..+.   ...+|-++.--|.-.|+..+|
T Consensus       257 ~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~---~a~sW~aVg~YYl~i~k~seA  331 (611)
T KOG1173|consen  257 GCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS---KALSWFAVGCYYLMIGKYSEA  331 (611)
T ss_pred             cChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC---CCcchhhHHHHHHHhcCcHHH
Confidence            44567777777777654  3445555555566777777777777777777776532   455677777777777888888


Q ss_pred             HHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC-CCCCHHHHHHHHHHHHhcCCchhhhHHHHH
Q 013010          189 LATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFR-CPPDVYTYTILISSYCKYGMQTGCRKAIRR  266 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~p~~~~~~~li~~~~~~g~~~~~~~~~~~  266 (451)
                      .+.|.+....  .|. ...|-....+|+-.|..|.|...+....+.-.. +.|..  |  +---|.+.+           
T Consensus       332 Rry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~L--Y--lgmey~~t~-----------  394 (611)
T KOG1173|consen  332 RRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSL--Y--LGMEYMRTN-----------  394 (611)
T ss_pred             HHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHH--H--HHHHHHHhc-----------
Confidence            8888776542  232 456777777788888888887777655443111 12322  2  233455566           


Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHH
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------GCIPNRVTYNSFIRYYSVVNEIDK  340 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~  340 (451)
                      .++.|.++|.+.... .+-|+..++-+--.....+.+.+|..+|+.....      .......+++.|-.+|.+.+.+++
T Consensus       395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            788899998877643 2345667777766667788899999988876521      111245678888889999999999


Q ss_pred             HHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010          341 AIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA  406 (451)
Q Consensus       341 A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  406 (451)
                      |+..+++.....  +-+..+|..+--.|...|+++.|.+.|.+..  .+.|+..+-..++..+...
T Consensus       474 AI~~~q~aL~l~--~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  474 AIDYYQKALLLS--PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHHHcC--CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHHHh
Confidence            999999988866  6788888888888999999999999998765  4778877777776655544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.77  E-value=1.2e-05  Score=68.10  Aligned_cols=209  Identities=13%  Similarity=0.009  Sum_probs=153.1

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA  213 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  213 (451)
                      +...|.-.|.+.|+...|..-+++..+....   +..+|..+...|-+.|+.+.|.+.|+...+.. +-+..+.|..-..
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs---~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~F  112 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS---YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHH
Confidence            4555777788888888888888888887632   56678888888888888888888888888743 2356777777888


Q ss_pred             HHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 013010          214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL  293 (451)
Q Consensus       214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  293 (451)
                      +|..|++++|...|++...... .+--..+|..+.-+..+.|           +.+.|...|++-.+.. +-...+.-.+
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~-Y~~~s~t~eN~G~Cal~~g-----------q~~~A~~~l~raL~~d-p~~~~~~l~~  179 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPA-YGEPSDTLENLGLCALKAG-----------QFDQAEEYLKRALELD-PQFPPALLEL  179 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCC-CCCcchhhhhhHHHHhhcC-----------CchhHHHHHHHHHHhC-cCCChHHHHH
Confidence            8888888888888888776543 1234467777877788888           7778888887777642 2234556667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHH
Q 013010          294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP  363 (451)
Q Consensus       294 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~  363 (451)
                      .....+.|++-.|...++.....+. ++..+.-..|..-...|+.+.+.+.=..+.+.   .|...-|..
T Consensus       180 a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~---fP~s~e~q~  245 (250)
T COG3063         180 ARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL---FPYSEEYQT  245 (250)
T ss_pred             HHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHh
Confidence            7777888888888888888777765 77777777777777888888877776666654   355444433

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.77  E-value=2.2e-05  Score=74.86  Aligned_cols=266  Identities=12%  Similarity=-0.014  Sum_probs=164.8

Q ss_pred             HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH---HHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHH
Q 013010          139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC---LIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINAL  214 (451)
Q Consensus       139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~  214 (451)
                      ...+...|++++|.+++++..+....   +...+..   ........+....+.+.+.. .. ...|+ ......+...+
T Consensus        50 a~~~~~~g~~~~A~~~~~~~l~~~P~---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~-~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          50 ALSAWIAGDLPKALALLEQLLDDYPR---DLLALKLHLGAFGLGDFSGMRDHVARVLPL-WA-PENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC---cHHHHHHhHHHHHhcccccCchhHHHHHhc-cC-cCCCCcHHHHHHHHHHH
Confidence            34556789999999999998887522   3334442   11112224555666666654 11 22333 44555666788


Q ss_pred             HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCCH--hhHH
Q 013010          215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPDV--VAYN  291 (451)
Q Consensus       215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~  291 (451)
                      ...|++++|...+++..+..   |.+...+..+...|...|           ++++|...+++.....- .++.  ..|-
T Consensus       125 ~~~G~~~~A~~~~~~al~~~---p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~~~~~~~~~~~  190 (355)
T cd05804         125 EEAGQYDRAEEAARRALELN---PDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDCSSMLRGHNWW  190 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhC---CCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCCCcchhHHHHH
Confidence            89999999999999999875   356778889999999999           99999999988776421 2232  2355


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHH-HhcCCCCCChhhHHHH
Q 013010          292 CLIDGCCKTYRIERALELFDDMNKKGC-IPNRVTY-N--SFIRYYSVVNEIDKAIEM--MRKM-QNLNHGVPTSSSYTPI  364 (451)
Q Consensus       292 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~t~-~--~li~~~~~~g~~~~A~~~--~~~m-~~~~~~~p~~~~~~~l  364 (451)
                      .+...+...|++++|..++++...... .+..... +  .++.-+...|..+.+.+.  .... ................
T Consensus       191 ~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~  270 (355)
T cd05804         191 HLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHA  270 (355)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHH
Confidence            677889999999999999999864422 1222221 2  233333344433333222  1111 1110101111222356


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhCCCC-------C-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010          365 IHALCEAGRVLEARDFLAELVDGGSV-------P-REYTYKLVCDALNAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       365 i~~~~~~g~~~~A~~l~~~m~~~g~~-------p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g  423 (451)
                      ..++...|+.+.|..+++.+......       . .....-...-++...|+.+.|.+.+...+..+
T Consensus       271 a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         271 ALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            66778889999999999998753221       1 11222223334568899999999988887543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.76  E-value=0.00018  Score=69.93  Aligned_cols=289  Identities=12%  Similarity=0.018  Sum_probs=170.6

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA  206 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  206 (451)
                      |+..+..-|-.=...|-..|.+-.+..+.......|+....-..||..-...|.+.+.++-|..+|....+. ++-+...
T Consensus       474 gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~sl  552 (913)
T KOG0495|consen  474 GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSL  552 (913)
T ss_pred             ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHH
Confidence            444444444444445555555555555555555555544344566777777778888888888888877763 2335566


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH---------------------
Q 013010          207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR---------------------  265 (451)
Q Consensus       207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~---------------------  265 (451)
                      |......--..|..+....+|++....   ||-....|-.....+-..|+...++..+.                     
T Consensus       553 Wlra~~~ek~hgt~Esl~Allqkav~~---~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~  629 (913)
T KOG0495|consen  553 WLRAAMFEKSHGTRESLEALLQKAVEQ---CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEF  629 (913)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhh
Confidence            666655555567777777777777665   33344455555555666663333332221                     


Q ss_pred             --HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 013010          266 --RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       266 --~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~  342 (451)
                        ..++.|..+|.+...  ..|+...|..-+..---.++.++|.+++++..+.  -|+ ...|-.+-+.+-+.++++.|.
T Consensus       630 en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  630 ENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             ccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHH
Confidence              145555555554443  3455555555444444555666666666655544  233 234444444555555566665


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH--
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI--  420 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~--  420 (451)
                      +.|..=.+..  +-.+..|-.|.+.=-+.|.+-.|..++++-.-.+- -+...|-..|+.=.+.|..+.|...+.+.+  
T Consensus       706 ~aY~~G~k~c--P~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe  782 (913)
T KOG0495|consen  706 EAYLQGTKKC--PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQE  782 (913)
T ss_pred             HHHHhccccC--CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5555443322  23344555565666667788888888887765542 356788888999999999988888877776  


Q ss_pred             --HhchHH
Q 013010          421 --RDGIEY  426 (451)
Q Consensus       421 --~~g~~~  426 (451)
                        ..|+-+
T Consensus       783 cp~sg~LW  790 (913)
T KOG0495|consen  783 CPSSGLLW  790 (913)
T ss_pred             CCccchhH
Confidence              356553

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.74  E-value=9.3e-06  Score=81.84  Aligned_cols=188  Identities=15%  Similarity=0.089  Sum_probs=130.5

Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHHH
Q 013010          218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDG  296 (451)
Q Consensus       218 g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~  296 (451)
                      +...+|..++.+.....-   .+...++.+-..+.+..           .+..|.+-|....+.- ..+|..+.-+|-+.
T Consensus       544 ~~~~ea~~~lk~~l~~d~---~np~arsl~G~~~l~k~-----------~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~  609 (1018)
T KOG2002|consen  544 NNLYEASLLLKDALNIDS---SNPNARSLLGNLHLKKS-----------EWKPAKKKFETILKKTSTKTDAYSLIALGNV  609 (1018)
T ss_pred             cCcHHHHHHHHHHHhccc---CCcHHHHHHHHHHHhhh-----------hhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence            344455555555444332   23333333444444444           4555555555444321 22466665555554


Q ss_pred             HHh------------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          297 CCK------------TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       297 ~~~------------~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      |..            .+..++|+++|....... +-|...-|-+-..++..|++.+|..+|.+..+..  .-+..+|-.+
T Consensus       610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNl  686 (1018)
T KOG2002|consen  610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNL  686 (1018)
T ss_pred             HHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeH
Confidence            432            245788999999888763 2367777888888999999999999999999876  3466789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          365 IHALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       365 i~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      .+.|...|++-.|+++|+.-.+ ..-.-+....+.|.+++-+.|.+.++.+.+......
T Consensus       687 ah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~  745 (1018)
T KOG2002|consen  687 AHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL  745 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            9999999999999999987664 455557888999999999999999888887776643

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=1.9e-05  Score=73.89  Aligned_cols=149  Identities=16%  Similarity=0.143  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM  345 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~  345 (451)
                      ++++|..=|++....  .| +...|-.+--+..+.+++++++..|++.++. ++-.+..|+.....+...+++++|.+.|
T Consensus       409 q~e~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~Y  485 (606)
T KOG0547|consen  409 QYEEAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQY  485 (606)
T ss_pred             HHHHHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHH
Confidence            777888888777654  33 3445555555666888999999999998876 3445788999999999999999999999


Q ss_pred             HHHHhcCCC------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010          346 RKMQNLNHG------VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKR  419 (451)
Q Consensus       346 ~~m~~~~~~------~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~  419 (451)
                      +........      .+.+..--.++-.-. .+++..|.+++...++..-+ ....|..|.+.-.+.|+.++|.+.+++.
T Consensus       486 D~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEks  563 (606)
T KOG0547|consen  486 DKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKS  563 (606)
T ss_pred             HHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            987765421      111112222222222 27889999999988875432 3568999999999999999999998877


Q ss_pred             H
Q 013010          420 I  420 (451)
Q Consensus       420 ~  420 (451)
                      .
T Consensus       564 a  564 (606)
T KOG0547|consen  564 A  564 (606)
T ss_pred             H
Confidence            6

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.73  E-value=0.00013  Score=70.72  Aligned_cols=284  Identities=13%  Similarity=0.003  Sum_probs=170.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT  191 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  191 (451)
                      .++-..+|+....+  ++.....|-.....+-..|++..|..++....+.+.   .+...|-.-++.-+.+.++++|..+
T Consensus       566 ~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p---nseeiwlaavKle~en~e~eraR~l  640 (913)
T KOG0495|consen  566 RESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP---NSEEIWLAAVKLEFENDELERARDL  640 (913)
T ss_pred             HHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC---CcHHHHHHHHHHhhccccHHHHHHH
Confidence            44444455554432  333444444444555555666666666665555431   1455566666666666666666666


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHH-HHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010          192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY-TYTILISSYCKYGMQTGCRKAIRRRIWE  270 (451)
Q Consensus       192 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~-~~~~li~~~~~~g~~~~~~~~~~~~~~~  270 (451)
                      |.+....  .|+...|.--++.---.++.++|.+++++..+.-    |+-. .|-.+-..+-+.+           +++.
T Consensus       641 lakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----p~f~Kl~lmlGQi~e~~~-----------~ie~  703 (913)
T KOG0495|consen  641 LAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----PDFHKLWLMLGQIEEQME-----------NIEM  703 (913)
T ss_pred             HHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----CchHHHHHHHhHHHHHHH-----------HHHH
Confidence            6665542  3555555554444445566666666666555442    3332 3333334444444           5555


Q ss_pred             HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       271 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      |.+.|..=.+. ++-....|-.|...=-+.|.+-+|..+++...-.+ +-+...|-..|+.=.+.|+.+.|..++.+..+
T Consensus       704 aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ  781 (913)
T KOG0495|consen  704 AREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ  781 (913)
T ss_pred             HHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55555433221 22233455555555567778888888888776653 22677888888888888888888887776665


Q ss_pred             cCC----------------------------CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010          351 LNH----------------------------GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDA  402 (451)
Q Consensus       351 ~~~----------------------------~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~  402 (451)
                      ...                            ..-|++..-.+...|....+++.|.+.|.+.++.+-. +..+|.-+...
T Consensus       782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d-~GD~wa~fykf  860 (913)
T KOG0495|consen  782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD-NGDAWAWFYKF  860 (913)
T ss_pred             hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc-cchHHHHHHHH
Confidence            432                            0234555556666677777888888888888765422 35678888888


Q ss_pred             HHhcCCCchHHHHHHHHH
Q 013010          403 LNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       403 ~~~~g~~~~a~~~~~~~~  420 (451)
                      +.++|..+.-.+++.+..
T Consensus       861 el~hG~eed~kev~~~c~  878 (913)
T KOG0495|consen  861 ELRHGTEEDQKEVLKKCE  878 (913)
T ss_pred             HHHhCCHHHHHHHHHHHh
Confidence            888888777777777766

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.73  E-value=1.5e-05  Score=67.56  Aligned_cols=183  Identities=16%  Similarity=0.116  Sum_probs=93.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh
Q 013010          210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA  289 (451)
Q Consensus       210 li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  289 (451)
                      |.-+|...|+...|.+-+++..+..   |-+..++..+...|.+.|           ..+.|.+-|+...... +-+..+
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~D---Ps~~~a~~~~A~~Yq~~G-----------e~~~A~e~YrkAlsl~-p~~GdV  105 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHD---PSYYLAHLVRAHYYQKLG-----------ENDLADESYRKALSLA-PNNGDV  105 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcC-----------ChhhHHHHHHHHHhcC-CCccch
Confidence            3344555555555555555555543   224445555555555555           4445555555444321 113344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010          290 YNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL  368 (451)
Q Consensus       290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  368 (451)
                      .|..-.-+|..|++++|...|+.....-.-| -..||..+.-+..+.|+.+.|.+.|++..+..  +-...+.-.+....
T Consensus       106 LNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~~~~~~l~~a~~~  183 (250)
T COG3063         106 LNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQFPPALLELARLH  183 (250)
T ss_pred             hhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cCCChHHHHHHHHH
Confidence            4445555555555555555555554432222 23455555555555555555555555555544  23334444555555


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010          369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS  410 (451)
Q Consensus       369 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~  410 (451)
                      .+.|++..|..+++.....+. ++....-..|+.-.+.|+-+
T Consensus       184 ~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~  224 (250)
T COG3063         184 YKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRA  224 (250)
T ss_pred             HhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHH
Confidence            555555555555555544433 55555555555555555555

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.68  E-value=3e-06  Score=77.47  Aligned_cols=247  Identities=11%  Similarity=0.021  Sum_probs=140.5

Q ss_pred             ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 013010          144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA  223 (451)
Q Consensus       144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  223 (451)
                      -.|++..+..-.+ ...  ..+.........+.+++...|+.+.++   .++.... .|.......+...+...++-+.+
T Consensus        13 y~G~Y~~~i~e~~-~~~--~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~   85 (290)
T PF04733_consen   13 YLGNYQQCINEAS-LKS--FSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA   85 (290)
T ss_dssp             CTT-HHHHCHHHH-CHT--STCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred             HhhhHHHHHHHhh-ccC--CCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence            3577777765444 222  122234445556677777788766543   3443332 56666665555444433445555


Q ss_pred             HHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 013010          224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI  303 (451)
Q Consensus       224 ~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  303 (451)
                      ..-+++....... ..+..........+...|           ++++|++++..-      .+.......+..|.+.+++
T Consensus        86 l~~l~~~~~~~~~-~~~~~~~~~~A~i~~~~~-----------~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~  147 (290)
T PF04733_consen   86 LEELKELLADQAG-ESNEIVQLLAATILFHEG-----------DYEEALKLLHKG------GSLELLALAVQILLKMNRP  147 (290)
T ss_dssp             HHHHHHCCCTS----CHHHHHHHHHHHHCCCC-----------HHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHhccc-cccHHHHHHHHHHHHHcC-----------CHHHHHHHHHcc------CcccHHHHHHHHHHHcCCH
Confidence            5555554433321 122222223333445556           777777777532      2456666677788888888


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 013010          304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSV----VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD  379 (451)
Q Consensus       304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  379 (451)
                      +.|.+.++.|.+.+   +..+...|..++..    .+.+.+|..+|+++.+..  .+++.+.+.+..++...|++++|.+
T Consensus       148 dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~--~~t~~~lng~A~~~l~~~~~~eAe~  222 (290)
T PF04733_consen  148 DLAEKELKNMQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF--GSTPKLLNGLAVCHLQLGHYEEAEE  222 (290)
T ss_dssp             HHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS----SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            88888888887653   23344444444433    235788888888877653  5677777888888888888888888


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHH
Q 013010          380 FLAELVDGGSVPREYTYKLVCDALNAAEEP-SLLDDGLRKRIR  421 (451)
Q Consensus       380 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~a~~~~~~~~~  421 (451)
                      ++.+..+.+- -+..|...++-+....|+. +.+.+.+.++..
T Consensus       223 ~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  223 LLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            8877665432 2455666677777777777 445555555553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.68  E-value=1.4e-05  Score=74.81  Aligned_cols=223  Identities=13%  Similarity=0.143  Sum_probs=174.6

Q ss_pred             HHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010          142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN  221 (451)
Q Consensus       142 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  221 (451)
                      +.-.|+...|..-|+...+....+ ++  .|--+...|....+.++..+.|++..+.+ +-|..+|..-...+.-.++++
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~-~~--lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e  411 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAF-NS--LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE  411 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCccc-ch--HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence            445688899999999988876432 22  36677778999999999999999998855 235667766666677778999


Q ss_pred             HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010          222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY  301 (451)
Q Consensus       222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  301 (451)
                      +|..=|++.++..   |-+...|--+.-+..+.+           ++++++..|++.+++ ++--+..||.....+...+
T Consensus       412 ~A~aDF~Kai~L~---pe~~~~~iQl~~a~Yr~~-----------k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqq  476 (606)
T KOG0547|consen  412 EAIADFQKAISLD---PENAYAYIQLCCALYRQH-----------KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQ  476 (606)
T ss_pred             HHHHHHHHHhhcC---hhhhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHH
Confidence            9999999998775   357778888888888888           999999999999865 5666789999999999999


Q ss_pred             CHHHHHHHHHHHHhCC-----CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010          302 RIERALELFDDMNKKG-----CIPNRVTY--NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV  374 (451)
Q Consensus       302 ~~~~a~~~~~~m~~~g-----~~p~~~t~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~  374 (451)
                      +++.|.+.|+...+..     +..+..++  ..++..-. .+++..|..++++..+..  +-....|..|...-.+.|++
T Consensus       477 qFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i  553 (606)
T KOG0547|consen  477 QFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKI  553 (606)
T ss_pred             hHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhH
Confidence            9999999999876541     11122222  22222222 389999999999999876  45667899999999999999


Q ss_pred             HHHHHHHHHHHh
Q 013010          375 LEARDFLAELVD  386 (451)
Q Consensus       375 ~~A~~l~~~m~~  386 (451)
                      ++|+++|++-..
T Consensus       554 ~eAielFEksa~  565 (606)
T KOG0547|consen  554 DEAIELFEKSAQ  565 (606)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.64  E-value=0.00014  Score=69.45  Aligned_cols=271  Identities=13%  Similarity=0.020  Sum_probs=167.3

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccH-HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT-SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ..|..+...+...|+.+.+.+.+....+.... ..+. .........+...|++++|.+.+++..+.. +.|...+.. .
T Consensus         7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~   83 (355)
T cd05804           7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAA-RATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H   83 (355)
T ss_pred             HHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence            34555666666778888877777666555422 1222 222223345567899999999999988752 334444443 2


Q ss_pred             HHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 013010          212 NALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV  287 (451)
Q Consensus       212 ~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~  287 (451)
                      ..+..    .+..+.+.+.+....  +. .+........+...+...|           ++++|...+++..+.. +.+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~l~~~~--~~-~~~~~~~~~~~a~~~~~~G-----------~~~~A~~~~~~al~~~-p~~~  148 (355)
T cd05804          84 LGAFGLGDFSGMRDHVARVLPLWA--PE-NPDYWYLLGMLAFGLEEAG-----------QYDRAEEAARRALELN-PDDA  148 (355)
T ss_pred             HHHHHhcccccCchhHHHHHhccC--cC-CCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhC-CCCc
Confidence            22322    455555666655411  11 1234455566777888999           8999999999998764 3346


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH-H-
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGC-IPNR--VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-T-  362 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-~-  362 (451)
                      ..+..+...+...|++++|...++......- .|+.  ..|..+...+...|++++|..++++........+..... + 
T Consensus       149 ~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~  228 (355)
T cd05804         149 WAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDA  228 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhH
Confidence            6778888899999999999999998776532 2332  345578888999999999999999986433211112111 1 


Q ss_pred             -HHHHHHHHcCCHHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          363 -PIIHALCEAGRVLEARDF--LAELVDGGS--VPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       363 -~li~~~~~~g~~~~A~~l--~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                       .++.-+...|..+.+.++  +........  ......-.....++...|+.+.+...+.....
T Consensus       229 ~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~  292 (355)
T cd05804         229 ASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG  292 (355)
T ss_pred             HHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence             223333444543333332  111111111  11222233577888999999999999988774

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.59  E-value=4.3e-05  Score=79.85  Aligned_cols=227  Identities=14%  Similarity=0.083  Sum_probs=180.4

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-----CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY  242 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~  242 (451)
                      +...|-.-|.-....++.++|.++.++.... +.+     -...|.++++.-...|.-+...++|++..+..    -...
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc----d~~~ 1531 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC----DAYT 1531 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc----chHH
Confidence            5556777788888889999999999988762 211     24567777777777788888999999998764    2346


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-
Q 013010          243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-  321 (451)
Q Consensus       243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-  321 (451)
                      .|..|...|.+.+           .+++|-++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+.  -|. 
T Consensus      1532 V~~~L~~iy~k~e-----------k~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~ 1597 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSE-----------KNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQ 1597 (1710)
T ss_pred             HHHHHHHHHHHhh-----------cchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchh
Confidence            7888999999998           889999999999874 3356788889999999999999999999987765  343 


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHH
Q 013010          322 --RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR--EYTYK  397 (451)
Q Consensus       322 --~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~  397 (451)
                        .....-.+..-.+.|+.+.+..+|+......  +--...|+..|+.=.++|+.+.+..+|++.+..++.|-  ...|.
T Consensus      1598 eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay--PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1598 EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY--PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC--ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence              3344455556678899999999999988876  34567899999999999999999999999999998886  45788


Q ss_pred             HHHHHHHhcCCCchHHHH
Q 013010          398 LVCDALNAAEEPSLLDDG  415 (451)
Q Consensus       398 ~li~~~~~~g~~~~a~~~  415 (451)
                      ..++.=...|+-+.++.+
T Consensus      1676 kwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHHHHHhcCchhhHHHH
Confidence            888888888887755433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.52  E-value=8e-06  Score=74.65  Aligned_cols=224  Identities=12%  Similarity=0.098  Sum_probs=139.9

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH-
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI-  211 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li-  211 (451)
                      ....-+..++...|+++.+.   .++....   .+.......+...+...++-+.++.-+++.......++..++..+. 
T Consensus        36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~~---~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A  109 (290)
T PF04733_consen   36 ERDFYQYRSYIALGQYDSVL---SEIKKSS---SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAA  109 (290)
T ss_dssp             HHHHHHHHHHHHTT-HHHHH---HHS-TTS---SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChhHHH---HHhccCC---ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            34445667777778766543   3332322   2344444444444433355566666665555444332333333322 


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN  291 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  291 (451)
                      ..+...|++++|++++..-        .+.......+..|.+.+           +++.|.+.++.|.+..  .| .+..
T Consensus       110 ~i~~~~~~~~~AL~~l~~~--------~~lE~~al~Vqi~L~~~-----------R~dlA~k~l~~~~~~~--eD-~~l~  167 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKG--------GSLELLALAVQILLKMN-----------RPDLAEKELKNMQQID--ED-SILT  167 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTT--------TCHHHHHHHHHHHHHTT------------HHHHHHHHHHHHCCS--CC-HHHH
T ss_pred             HHHHHcCCHHHHHHHHHcc--------CcccHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcC--Cc-HHHH
Confidence            3455678899888887642        25667778888899988           8889999999988652  34 3333


Q ss_pred             HHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010          292 CLIDGCC----KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA  367 (451)
Q Consensus       292 ~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  367 (451)
                      .+..++.    ....+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+  +-+..+...++-.
T Consensus       168 qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--~~~~d~LaNliv~  244 (290)
T PF04733_consen  168 QLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--PNDPDTLANLIVC  244 (290)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--cCCHHHHHHHHHH
Confidence            3444443    234688999999997665 56788888888889999999999999999887655  4566677777777


Q ss_pred             HHHcCCH-HHHHHHHHHHHhC
Q 013010          368 LCEAGRV-LEARDFLAELVDG  387 (451)
Q Consensus       368 ~~~~g~~-~~A~~l~~~m~~~  387 (451)
                      ....|+. +.+.+++.++...
T Consensus       245 ~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  245 SLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHhCCChhHHHHHHHHHHHh
Confidence            7777877 6677888887753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=0.0002  Score=68.40  Aligned_cols=266  Identities=14%  Similarity=0.065  Sum_probs=199.7

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +......-..-+-..+++.+..++++.+.+.. +  +....+..=|.++...|+..+-..+=..|.+. .+-...+|-++
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-p--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV  318 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-P--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV  318 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-C--CCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence            34444445555667889999999999988875 2  24445777777888888887777777777764 34568899999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh--cCC-CCCH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF--KGF-VPDV  287 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~--~~~-~~~~  287 (451)
                      .--|.-.|+.++|.+.|.+.......   =...|-.+...|+-.|           .-++|...+...-+  .|. .|. 
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~~---fgpaWl~fghsfa~e~-----------EhdQAmaaY~tAarl~~G~hlP~-  383 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDPT---FGPAWLAFGHSFAGEG-----------EHDQAMAAYFTAARLMPGCHLPS-  383 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCcc---ccHHHHHHhHHhhhcc-----------hHHHHHHHHHHHHHhccCCcchH-
Confidence            88888889999999999987655422   2346777788888888           66777777765543  222 222 


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCC-ChhhH
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN----HGVP-TSSSY  361 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~p-~~~~~  361 (451)
                       .|  +---|.+.++.+.|.+.|.+....  .| |+...+-+--.....+.+.+|..+|......-    ...+ ...++
T Consensus       384 -LY--lgmey~~t~n~kLAe~Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~  458 (611)
T KOG1173|consen  384 -LY--LGMEYMRTNNLKLAEKFFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTL  458 (611)
T ss_pred             -HH--HHHHHHHhccHHHHHHHHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHH
Confidence             22  334577889999999999987754  45 67778877777778899999999998876221    1112 45578


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       362 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      +.|-++|.+.+.+++|+..++..+.. .+-+..++.++.-.|...|+++.|.+.+++...
T Consensus       459 ~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  459 NNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            89999999999999999999998865 344788999999999999999999999999874

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=0.00047  Score=63.50  Aligned_cols=269  Identities=14%  Similarity=0.050  Sum_probs=113.5

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA  206 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  206 (451)
                      .++-|+.....+...+...|+.++|...|+.....+.........|..|   +...|+.+....+...+.... +-+...
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~  302 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASH  302 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence            3444555666666666666666666666666555432211112223222   233444444444444433210 112222


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010          207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD  286 (451)
Q Consensus       207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~  286 (451)
                      |-.-.......++++.|+.+-++-.+..-   -+...|-.--..+...+           +.++|.-.|+..+... +-+
T Consensus       303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~~---r~~~alilKG~lL~~~~-----------R~~~A~IaFR~Aq~La-p~r  367 (564)
T KOG1174|consen  303 WFVHAQLLYDEKKFERALNFVEKCIDSEP---RNHEALILKGRLLIALE-----------RHTQAVIAFRTAQMLA-PYR  367 (564)
T ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhccCc---ccchHHHhccHHHHhcc-----------chHHHHHHHHHHHhcc-hhh
Confidence            22222223334444444444444443321   12223322223333333           4555555555443221 124


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCCC-hhhHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI-RYYS-VVNEIDKAIEMMRKMQNLNHGVPT-SSSYTP  363 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~-~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~  363 (451)
                      ...|.-|+..|...|++.+|.-+-+..... +.-+..+.+.+- ..+. ....-++|..+++.-.+..   |+ ....+.
T Consensus       368 L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~---P~Y~~AV~~  443 (564)
T KOG1174|consen  368 LEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN---PIYTPAVNL  443 (564)
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC---CccHHHHHH
Confidence            455555555555555555554443332221 011222222110 0010 1111233444444333321   22 223334


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       364 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +...|...|+.+++..+++.-..  ..||...-+.|.+.+.....+.++.+.+....
T Consensus       444 ~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL  498 (564)
T KOG1174|consen  444 IAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL  498 (564)
T ss_pred             HHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            44445555666666666555443  34555555566666666665555555555444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.38  E-value=0.0007  Score=73.17  Aligned_cols=302  Identities=12%  Similarity=0.055  Sum_probs=188.5

Q ss_pred             hcCHHHHHHHHHHHhhcCCC-----CCC--HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc--cHHhHHHHHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDF-----FHN--EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV--TTSSVTCLIKVL  179 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~-----~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~li~~~  179 (451)
                      .+++++|...++.......-     .+.  ......+...+...|++++|...++...........  .....+.+...+
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            45678888877766542111     111  112222334556789999999999987764211111  123445666677


Q ss_pred             HhcCCHHHHHHHHHHHhhC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCC-CCCCHHHHHHHHH
Q 013010          180 GEEGLVNEALATFYRMKQF----RC-RPDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFR-CPPDVYTYTILIS  249 (451)
Q Consensus       180 ~~~g~~~~A~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~p~~~~~~~li~  249 (451)
                      ...|++++|...+++....    |- .....++..+...+...|++++|...+++....    +.. .+.....+..+..
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  581 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ  581 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            7899999999999888652    11 112344556667788899999999998876542    211 0112344555666


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc--CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK--GFVP--DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPN  321 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~  321 (451)
                      .+...|           ++++|...+.+....  ...+  ....+..+...+...|+++.|.+.+......    +..+.
T Consensus       582 ~~~~~G-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~  650 (903)
T PRK04841        582 LLWEWA-----------RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSD  650 (903)
T ss_pred             HHHHhc-----------CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHh
Confidence            777778           777777777665432  1112  2334455666778899999999999887542    11111


Q ss_pred             HHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-
Q 013010          322 RVTY--NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDG----GSVPR-  392 (451)
Q Consensus       322 ~~t~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-  392 (451)
                      ....  ...+..+...|+.+.|.+++..........+.  ...+..+..++...|+.++|..++.+....    |..++ 
T Consensus       651 ~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~  730 (903)
T PRK04841        651 WIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDL  730 (903)
T ss_pred             HhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHH
Confidence            1011  11234455689999999998776543211110  111345667788899999999999887643    43332 


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          393 EYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       393 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      ..++..+..++.+.|+.+.|.+.+.+.++
T Consensus       731 a~~~~~la~a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        731 NRNLILLNQLYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34677778889999999999999998874

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=0.00073  Score=62.30  Aligned_cols=259  Identities=12%  Similarity=0.031  Sum_probs=187.9

Q ss_pred             CCCchhhhcCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH
Q 013010          102 YRDPQKVTLGLNKATEFYHWVERFFDFFH-NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG  180 (451)
Q Consensus       102 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~  180 (451)
                      .++.+-..|+-++|+..|+...-   ..| +..........+.+.|+.+....+...+....   +.+...|-.-.....
T Consensus       238 lak~~~~~Gdn~~a~~~Fe~~~~---~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~---~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  238 LGKCLYYNGDYFQAEDIFSSTLC---ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV---KYTASHWFVHAQLLY  311 (564)
T ss_pred             HhhhhhhhcCchHHHHHHHHHhh---CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh---hcchhhhhhhhhhhh
Confidence            44667778999999999999863   333 33344445566788999999998888877654   124444555555666


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010          181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC  260 (451)
Q Consensus       181 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~  260 (451)
                      ...+++.|+.+-++..+.+ +.+...|-.=..++...|+.++|.-.|...+...   |.+...|.-|+.+|...|     
T Consensus       312 ~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La---p~rL~~Y~GL~hsYLA~~-----  382 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA---PYRLEIYRGLFHSYLAQK-----  382 (564)
T ss_pred             hhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHhhc-----
Confidence            7889999999999888743 2345555555567788999999999999888764   468899999999999999     


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH-HHHHh-cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010          261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI-DGCCK-TYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNE  337 (451)
Q Consensus       261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li-~~~~~-~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~  337 (451)
                            ++.+|.-.-++.... +..+..+.+.+- ..+.- ..--++|.++++.-...  .|+ ....+.+...+...|.
T Consensus       383 ------~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~  453 (564)
T KOG1174|consen  383 ------RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGP  453 (564)
T ss_pred             ------hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCc
Confidence                  777776655543321 122444444331 22222 22346788888775554  565 4556777788889999


Q ss_pred             HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       338 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      .++++.+++.....   .||....+.|-+.+.-.+.+.+|++.|......
T Consensus       454 ~~D~i~LLe~~L~~---~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  454 TKDIIKLLEKHLII---FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             cchHHHHHHHHHhh---ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            99999999998874   589999999999999999999999999887753

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.38  E-value=6.3e-05  Score=67.14  Aligned_cols=188  Identities=12%  Similarity=0.005  Sum_probs=130.2

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-HHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PD-VYAYN  208 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-~~~~~  208 (451)
                      ....+..+...+.+.|+++.|...++++............++..+..++...|++++|...|+++.+..-. |. ..++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            45567778888899999999999999998875332223356778889999999999999999999874311 11 12444


Q ss_pred             HHHHHHHhc--------CChHHHHHHHHHhhhCCCCCCCCH-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010          209 VVINALCRV--------GNFNKARFLLEQMELPGFRCPPDV-YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       209 ~li~~~~~~--------g~~~~a~~~~~~m~~~g~~~~p~~-~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~  279 (451)
                      .+..++...        |+.++|.+.|+.+....    |+. ..+..+...    +           .....      ..
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~a~~~~----~-----------~~~~~------~~  166 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY----PNSEYAPDAKKRM----D-----------YLRNR------LA  166 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC----CCChhHHHHHHHH----H-----------HHHHH------HH
Confidence            455555544        77889999999998765    443 233222111    1           10010      00


Q ss_pred             hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010          280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       280 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                              ...-.+...+.+.|++++|...++...+..  .+.....+..+..+|...|+.++|..+++.+...
T Consensus       167 --------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       167 --------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             --------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence                    001245567889999999999999987662  1224578889999999999999999999888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.38  E-value=0.0024  Score=62.30  Aligned_cols=302  Identities=16%  Similarity=0.127  Sum_probs=198.8

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      .|+-++|.+..+...+  +-..+..+|+.+.-.+....++++|.+.+......+.   .|...|.-+--.=+..|+++..
T Consensus        54 lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~---dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   54 LGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK---DNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             ccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHHhhhhH
Confidence            4556788888777653  4555778899888888888999999999999888763   2677777777667778888888


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH------HHhcCCchhhhH
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS------YCKYGMQTGCRK  262 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~------~~~~g~~~~~~~  262 (451)
                      ......+.+.. +-....|..+..++.-.|+...|..++++..+.... .|+...|.-....      ..+.|..+.+.+
T Consensus       129 ~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~-~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale  206 (700)
T KOG1156|consen  129 LETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT-SPSKEDYEHSELLLYQNQILIEAGSLQKALE  206 (700)
T ss_pred             HHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            88888887742 234567788888888899999999999999877642 4677666543332      344454444433


Q ss_pred             HHH-----------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH-hcCCHHHH------------
Q 013010          263 AIR-----------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC-KTYRIERA------------  306 (451)
Q Consensus       263 ~~~-----------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~-~~g~~~~a------------  306 (451)
                      -+.                       +++++|..++..+..+  .||..-|.-.+..+. +..+.-++            
T Consensus       207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y  284 (700)
T KOG1156|consen  207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY  284 (700)
T ss_pred             HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence            221                       5888999999988876  466665544433322 11111111            


Q ss_pred             -----------------------HHHHHHHHhCCC---------------------------------------------
Q 013010          307 -----------------------LELFDDMNKKGC---------------------------------------------  318 (451)
Q Consensus       307 -----------------------~~~~~~m~~~g~---------------------------------------------  318 (451)
                                             .+++..+.+.|+                                             
T Consensus       285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~  364 (700)
T KOG1156|consen  285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQ  364 (700)
T ss_pred             cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCccccccc
Confidence                                   112222222332                                             


Q ss_pred             -CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010          319 -IPNRVTY--NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY  394 (451)
Q Consensus       319 -~p~~~t~--~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  394 (451)
                       +|+...|  -.++..|-..|+++.|...++....+.   |+. ..|..=.+.+...|++++|..++++..+.. .+|..
T Consensus       365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT---PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~  440 (700)
T KOG1156|consen  365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT---PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA  440 (700)
T ss_pred             CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC---chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence             2333222  345666677788888888888777643   433 345455566778888888888887776553 24555


Q ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010          395 TYKLVCDALNAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       395 t~~~li~~~~~~g~~~~a~~~~~~~~~~g  423 (451)
                      .-.--..-..++.+.++|.+++.+.-+.|
T Consensus       441 INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  441 INSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            44455666777788888888887777665

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.35  E-value=0.00016  Score=64.57  Aligned_cols=195  Identities=16%  Similarity=0.062  Sum_probs=131.3

Q ss_pred             ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH-
Q 013010          167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-  241 (451)
Q Consensus       167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~-  241 (451)
                      .....+-.+...+...|++++|...|+++....  |+    ..++..+..++...|++++|...++++.+..-. .|.. 
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~  107 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDAD  107 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchH
Confidence            356678888888999999999999999998743  43    246777888999999999999999999876521 1221 


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010          242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV-AYNCLIDGCCKTYRIERALELFDDMNKKGCIP  320 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  320 (451)
                      .++..+..++.+.....   ....++.++|.+.|+.+...  .|+.. .+.++... ..   ....      .       
T Consensus       108 ~a~~~~g~~~~~~~~~~---~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~~~------~-------  165 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRV---DRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LRNR------L-------  165 (235)
T ss_pred             HHHHHHHHHHHHhcccc---cCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HHHH------H-------
Confidence            24555555555431000   00002788999999988865  34432 22222111 11   1110      0       


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                       ......+...|.+.|++++|...+.+..+.... +.....+..+..++.+.|++++|..+++.+...
T Consensus       166 -~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       166 -AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             -HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence             011124556789999999999999999886532 224578899999999999999999999988754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.34  E-value=0.00099  Score=61.86  Aligned_cols=206  Identities=11%  Similarity=0.012  Sum_probs=141.7

Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh-
Q 013010          143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF-  220 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-  220 (451)
                      ...++.++|..+..++...+..   +..+|+.--..+...| ++++++..++++.+.. +-+..+|+..-..+.+.|+. 
T Consensus        48 ~~~e~serAL~lt~~aI~lnP~---~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~  123 (320)
T PLN02789         48 ASDERSPRALDLTADVIRLNPG---NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA  123 (320)
T ss_pred             HcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence            4467888999999988887633   4456766666666667 5789999999988754 33556677655555566653 


Q ss_pred             -HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 013010          221 -NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK  299 (451)
Q Consensus       221 -~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  299 (451)
                       ++++.+++.+.+...   -|..+|+-..-.+.+.|           +++++++.++++.+.+. -|...|+.....+.+
T Consensus       124 ~~~el~~~~kal~~dp---kNy~AW~~R~w~l~~l~-----------~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~  188 (320)
T PLN02789        124 ANKELEFTRKILSLDA---KNYHAWSHRQWVLRTLG-----------GWEDELEYCHQLLEEDV-RNNSAWNQRYFVITR  188 (320)
T ss_pred             hHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHh
Confidence             677888888887763   48888888888888888           88899999999987653 355666665555544


Q ss_pred             c---CCH----HHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010          300 T---YRI----ERALELFDDMNKKGCIP-NRVTYNSFIRYYSVV----NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA  367 (451)
Q Consensus       300 ~---g~~----~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  367 (451)
                      .   |..    ++..+...++...  .| |...|+.+-..+...    +...+|.+.+.+....+  +.+......|++.
T Consensus       189 ~~~l~~~~~~~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~--~~s~~al~~l~d~  264 (320)
T PLN02789        189 SPLLGGLEAMRDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD--SNHVFALSDLLDL  264 (320)
T ss_pred             ccccccccccHHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc--CCcHHHHHHHHHH
Confidence            4   222    3555666555554  34 667787777777663    34456778877766644  4566777788888


Q ss_pred             HHHc
Q 013010          368 LCEA  371 (451)
Q Consensus       368 ~~~~  371 (451)
                      |+..
T Consensus       265 ~~~~  268 (320)
T PLN02789        265 LCEG  268 (320)
T ss_pred             HHhh
Confidence            8753

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.32  E-value=0.00025  Score=68.01  Aligned_cols=258  Identities=14%  Similarity=0.075  Sum_probs=183.4

Q ss_pred             HHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCC
Q 013010          141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGN  219 (451)
Q Consensus       141 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~  219 (451)
                      -+.+.|++.+|.-.|+..++.+.   -+...|--|-..-..+++-..|+..+.+..+.  .| +......|.-.|...|.
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP---~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDP---QHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhCh---HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhh
Confidence            34567888888888888887753   36778888888888888888888888888774  34 56777777778888888


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH-HHHHHHHHHHHHHHHHH-hcCCCCCHhhHHHHHHHH
Q 013010          220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK-AIRRRIWEANHLFRLML-FKGFVPDVVAYNCLIDGC  297 (451)
Q Consensus       220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~-~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~li~~~  297 (451)
                      -..|++.++.......   |-    ..+..+ ...+....-.+ .....+.+..++|-++. +.+..+|..+...|--.|
T Consensus       369 q~~Al~~L~~Wi~~~p---~y----~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy  440 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNKP---KY----VHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY  440 (579)
T ss_pred             HHHHHHHHHHHHHhCc---cc----hhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence            8888888887755431   10    000000 00000000000 00014556666666665 455557888888888889


Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHcCCHH
Q 013010          298 CKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT-SSSYTPIIHALCEAGRVL  375 (451)
Q Consensus       298 ~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~  375 (451)
                      --.|++++|.+-|+.....  .| |..+||.|-..+++..+..+|+.-|++..+..   |+ +.....|--+|...|.++
T Consensus       441 ~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq---P~yVR~RyNlgIS~mNlG~yk  515 (579)
T KOG1125|consen  441 NLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ---PGYVRVRYNLGISCMNLGAYK  515 (579)
T ss_pred             hcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC---CCeeeeehhhhhhhhhhhhHH
Confidence            9999999999999998876  56 78999999999999999999999999999864   33 345555666899999999


Q ss_pred             HHHHHHHHHH---hC------CCCCCHHHHHHHHHHHHhcCCCchHHHHH
Q 013010          376 EARDFLAELV---DG------GSVPREYTYKLVCDALNAAEEPSLLDDGL  416 (451)
Q Consensus       376 ~A~~l~~~m~---~~------g~~p~~~t~~~li~~~~~~g~~~~a~~~~  416 (451)
                      +|.+.|-+.+   ..      +..++...|.+|-.+++-.++.|.+.+..
T Consensus       516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            9999886654   22      22334568888888888888888554443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.27  E-value=1.6e-06  Score=51.45  Aligned_cols=33  Identities=55%  Similarity=0.955  Sum_probs=25.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013010          289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPN  321 (451)
Q Consensus       289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  321 (451)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            677777777777777777777777777777776

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.26  E-value=2.1e-06  Score=51.02  Aligned_cols=34  Identities=38%  Similarity=0.763  Sum_probs=28.0

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR  392 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  392 (451)
                      .+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3688888888888888888888888888888886

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.00086  Score=59.22  Aligned_cols=263  Identities=13%  Similarity=0.060  Sum_probs=142.1

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH-HHH
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV-INA  213 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~  213 (451)
                      +++.+..+.+..+++.|.+++....++..+   +....+.|..+|-...++..|-..|+++...  .|...-|... ...
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~---~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPR---SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS   87 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            445555556666777777776666555422   4455666666666777777777777776652  3444444321 223


Q ss_pred             HHhcCChHHHHHHHHHhhhCCCC-------------CC----------------CCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010          214 LCRVGNFNKARFLLEQMELPGFR-------------CP----------------PDVYTYTILISSYCKYGMQTGCRKAI  264 (451)
Q Consensus       214 ~~~~g~~~~a~~~~~~m~~~g~~-------------~~----------------p~~~~~~~li~~~~~~g~~~~~~~~~  264 (451)
                      +.+++.+..|+++...|.+...-             ..                -+..+.+.......+.|         
T Consensus        88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykeg---------  158 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEG---------  158 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccc---------
Confidence            44455566666666555432100             00                01112222222223333         


Q ss_pred             HHHHHHHHHHHHHHHh-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-------------CCHHH------
Q 013010          265 RRRIWEANHLFRLMLF-KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-------------PNRVT------  324 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------p~~~t------  324 (451)
                        ++++|.+-|+...+ .|.. ....||.-+..| +.|+.+.|.+...++.++|++             ||...      
T Consensus       159 --qyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~  234 (459)
T KOG4340|consen  159 --QYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV  234 (459)
T ss_pred             --cHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence              88999999988776 4554 456788666544 568899999999999887742             22211      


Q ss_pred             --HHHHHHH-------HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010          325 --YNSFIRY-------YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYT  395 (451)
Q Consensus       325 --~~~li~~-------~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t  395 (451)
                        -+.++.+       +.+.|+.+.|.+-+-.|.-+.....|++|...+.-.= -.+++.+..+-+.-+.+.+. -...|
T Consensus       235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ET  312 (459)
T KOG4340|consen  235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPET  312 (459)
T ss_pred             HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHH
Confidence              1334443       4567889999888888765544344555544432111 11223333332333333221 23345


Q ss_pred             HHHHHHHHHhcCCCchHHHHHH
Q 013010          396 YKLVCDALNAAEEPSLLDDGLR  417 (451)
Q Consensus       396 ~~~li~~~~~~g~~~~a~~~~~  417 (451)
                      |..++-.||+..-++.|.+++.
T Consensus       313 FANlLllyCKNeyf~lAADvLA  334 (459)
T KOG4340|consen  313 FANLLLLYCKNEYFDLAADVLA  334 (459)
T ss_pred             HHHHHHHHhhhHHHhHHHHHHh
Confidence            5555555555555555554443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.21  E-value=2.4e-06  Score=50.39  Aligned_cols=33  Identities=39%  Similarity=0.758  Sum_probs=24.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP  320 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  320 (451)
                      .+||++|.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777766

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.21  E-value=0.0074  Score=59.02  Aligned_cols=122  Identities=17%  Similarity=0.134  Sum_probs=90.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010          290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL  368 (451)
Q Consensus       290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  368 (451)
                      +-.++..+-+.|+++.|...++....+  .|+ ..-|..=.+.+...|++++|..++++..+..  .||...=+--..-.
T Consensus       374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD--~aDR~INsKcAKYm  449 (700)
T KOG1156|consen  374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD--TADRAINSKCAKYM  449 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc--chhHHHHHHHHHHH
Confidence            344667778899999999999988776  555 3445555678899999999999999999887  68877766777888


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHH--------HHH--HHHHHhcCCCchHHHHHH
Q 013010          369 CEAGRVLEARDFLAELVDGGSVPREYTY--------KLV--CDALNAAEEPSLLDDGLR  417 (451)
Q Consensus       369 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~--------~~l--i~~~~~~g~~~~a~~~~~  417 (451)
                      .++++.++|.++....-..|.  +...+        -.+  ..+|.+.|++..|.+-++
T Consensus       450 LrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh  506 (700)
T KOG1156|consen  450 LRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH  506 (700)
T ss_pred             HHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence            899999999999988887765  32222        111  345666666655544443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.19  E-value=0.0021  Score=67.80  Aligned_cols=242  Identities=11%  Similarity=0.021  Sum_probs=179.3

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC-CCC-CccHHhHHHHHHHHHhcCCHHHHHH
Q 013010          113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGE-LVTTSSVTCLIKVLGEEGLVNEALA  190 (451)
Q Consensus       113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~-~~~~~~~~~li~~~~~~g~~~~A~~  190 (451)
                      +.|.++-+.+.   +-|-+...|-..+......++.++|.+++++....- +.. .--...|.++++.-..-|.-+...+
T Consensus      1442 esaeDferlvr---ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~k 1518 (1710)
T KOG1070|consen 1442 ESAEDFERLVR---SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKK 1518 (1710)
T ss_pred             cCHHHHHHHHh---cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHH
Confidence            45555555544   334456678889999999999999999999987763 111 1123468888887777888899999


Q ss_pred             HHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010          191 TFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE  270 (451)
Q Consensus       191 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~  270 (451)
                      +|++..+..  -.-..|..|...|.+.++.++|-++|+.|.+.--   -....|...+..+.+..           .-+.
T Consensus      1519 VFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~---q~~~vW~~y~~fLl~~n-----------e~~a 1582 (1710)
T KOG1070|consen 1519 VFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG---QTRKVWIMYADFLLRQN-----------EAEA 1582 (1710)
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc---chhhHHHHHHHHHhccc-----------HHHH
Confidence            999999842  2346688899999999999999999999987632   46788999999999988           6677


Q ss_pred             HHHHHHHHHhcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013010          271 ANHLFRLMLFKGFVPD---VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK  347 (451)
Q Consensus       271 a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~  347 (451)
                      |..++.+..+.  -|-   .......+..-.+.|+.+++..+|+.....- +--...|+.+|..=.++|+.+.+..+|++
T Consensus      1583 a~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeR 1659 (1710)
T KOG1070|consen 1583 ARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFER 1659 (1710)
T ss_pred             HHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHH
Confidence            88888777654  232   2334445555678999999999999988762 22578899999999999999999999999


Q ss_pred             HHhcCCCCCC-hhhHHHHHHHHHHcCCHHH
Q 013010          348 MQNLNHGVPT-SSSYTPIIHALCEAGRVLE  376 (451)
Q Consensus       348 m~~~~~~~p~-~~~~~~li~~~~~~g~~~~  376 (451)
                      ....+...-. ...|...+..=...|+-..
T Consensus      1660 vi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1660 VIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             HHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            9998862111 2345555544444565443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.18  E-value=0.0018  Score=70.00  Aligned_cols=274  Identities=10%  Similarity=-0.028  Sum_probs=167.2

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCC------CCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHH
Q 013010          138 MGIVFARGNNVKGLWDFLKDMSRRGNG------ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAY  207 (451)
Q Consensus       138 ll~~~~~~g~~~~a~~~~~~m~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~  207 (451)
                      ....+...|+++++...+......-..      +.........+-..+...|++++|...+++..+.--..+    ....
T Consensus       415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~  494 (903)
T PRK04841        415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT  494 (903)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence            344456778999999988876543111      111112222233445678999999999998766311112    1344


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CC--CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh----
Q 013010          208 NVVINALCRVGNFNKARFLLEQMELPGFRC-PP--DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF----  280 (451)
Q Consensus       208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~p--~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~----  280 (451)
                      +.+...+...|++++|...+++.....-.. .+  ...++..+...+...|           ++++|...+++...    
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G-----------~~~~A~~~~~~al~~~~~  563 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG-----------FLQAAYETQEKAFQLIEE  563 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHH
Confidence            566667778999999999998875431110 01  2245566677788889           66666666655433    


Q ss_pred             cCCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 013010          281 KGFV--P-DVVAYNCLIDGCCKTYRIERALELFDDMNKK--GCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH  353 (451)
Q Consensus       281 ~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~  353 (451)
                      .+..  + ....+..+...+...|++++|...+.+....  ...+  ...++..+...+...|+.++|.+.+.+......
T Consensus       564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~  643 (903)
T PRK04841        564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLG  643 (903)
T ss_pred             hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            2211  1 2234455556677789999999999886543  1112  234445566677889999999999988765321


Q ss_pred             CCCChhhH-----HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          354 GVPTSSSY-----TPIIHALCEAGRVLEARDFLAELVDGGSVPR---EYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       354 ~~p~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      .......+     ...+..+...|+.+.|.+++...........   ...+..+..++...|+.+.|...+.+....
T Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        644 NGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             cccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            01111111     1122445568999999999877654221111   112456778889999999998888887753

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.18  E-value=0.00042  Score=71.83  Aligned_cols=221  Identities=8%  Similarity=0.036  Sum_probs=152.0

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..|+..+-..+++++|.++.+...+....   ....|-.+...+.+.++...+..+                 .+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~   89 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRRPLNDSNLL-----------------NL   89 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhcchhhhhhh-----------------hh
Confidence            4667888999999999999999999977776432   233344444466667775555444                 23


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY  290 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  290 (451)
                      +.......++..+..+...|...+    -+..++..+..+|-+.|           +.++|..+|+++.+.. +-|..+.
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~----~~k~Al~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D-~~n~~aL  153 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYG----ENKLALRTLAEAYAKLN-----------ENKKLKGVWERLVKAD-RDNPEIV  153 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhh----hhhHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcC-cccHHHH
Confidence            333444445545555555666554    46668888899999988           8889999999988876 5577888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----------------
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG----------------  354 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----------------  354 (451)
                      |.+...|+.. ++++|.+++......               |...+++.++.++|.++......                
T Consensus       154 Nn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~  217 (906)
T PRK14720        154 KKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHR  217 (906)
T ss_pred             HHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhh
Confidence            8888888888 899998888877654               44444555555555555443311                


Q ss_pred             --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010          355 --VPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN  404 (451)
Q Consensus       355 --~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~  404 (451)
                        .--+.++-.+...|...++++++..+++...+..-. |.....-++.+|.
T Consensus       218 ~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        218 EFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             ccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence              222345556667777888899999999999876433 5566777777776

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.18  E-value=3.2e-06  Score=49.85  Aligned_cols=33  Identities=24%  Similarity=0.448  Sum_probs=23.4

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVP  391 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  391 (451)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.17  E-value=0.0037  Score=59.17  Aligned_cols=112  Identities=15%  Similarity=0.060  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAIEMM  345 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~  345 (451)
                      .+++|+..++.+... .+-|..-.......+.+.++..+|.+.++.+...  .|+ ....-.+-++|.+.|++++|+.++
T Consensus       321 ~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L  397 (484)
T COG4783         321 QYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRIL  397 (484)
T ss_pred             ccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHH
Confidence            455666666655543 1223333344445555666666666666665554  343 334444555566666666666666


Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010          346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE  383 (451)
Q Consensus       346 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  383 (451)
                      +......  +-|+..|..|..+|...|+..+|..-..+
T Consensus       398 ~~~~~~~--p~dp~~w~~LAqay~~~g~~~~a~~A~AE  433 (484)
T COG4783         398 NRYLFND--PEDPNGWDLLAQAYAELGNRAEALLARAE  433 (484)
T ss_pred             HHHhhcC--CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence            6655544  45555666666666666665555554433

>PLN02789 farnesyltranstransferase

Probab=98.17  E-value=0.0028  Score=58.84  Aligned_cols=216  Identities=11%  Similarity=-0.003  Sum_probs=152.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      +.+-..+...+..++|+.+++++.+.  .|+ ..+|+.--.++...| ++++++..++++....-   -+..+|+.--..
T Consensus        41 ~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np---knyqaW~~R~~~  115 (320)
T PLN02789         41 DYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP---KNYQIWHHRRWL  115 (320)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC---cchHHhHHHHHH
Confidence            33334444557788999999998874  343 456666555666667 57999999999988763   466667765555


Q ss_pred             HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013010          251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR  330 (451)
Q Consensus       251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  330 (451)
                      +.+.|..         ..++++.+++.+.+.. +-|..+|+-...++...|+++++++.++++.+.+.. |...|+....
T Consensus       116 l~~l~~~---------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~  184 (320)
T PLN02789        116 AEKLGPD---------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYF  184 (320)
T ss_pred             HHHcCch---------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHH
Confidence            5555511         2356788888887653 347788888888888999999999999999987644 6677776655


Q ss_pred             HHHhc---CC----HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc----CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010          331 YYSVV---NE----IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA----GRVLEARDFLAELVDGGSVPREYTYKLV  399 (451)
Q Consensus       331 ~~~~~---g~----~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~l  399 (451)
                      .+.+.   |.    .+++++...++....  +-|...|+.+...+...    ++..+|.+.+.+..+.+ ..+......|
T Consensus       185 vl~~~~~l~~~~~~~e~el~y~~~aI~~~--P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l  261 (320)
T PLN02789        185 VITRSPLLGGLEAMRDSELKYTIDAILAN--PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDL  261 (320)
T ss_pred             HHHhccccccccccHHHHHHHHHHHHHhC--CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHH
Confidence            55544   22    356777777777765  56778888888778773    34567888888877644 3467788889


Q ss_pred             HHHHHhcC
Q 013010          400 CDALNAAE  407 (451)
Q Consensus       400 i~~~~~~g  407 (451)
                      ++.|+...
T Consensus       262 ~d~~~~~~  269 (320)
T PLN02789        262 LDLLCEGL  269 (320)
T ss_pred             HHHHHhhh
Confidence            99998643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.15  E-value=0.00044  Score=68.17  Aligned_cols=233  Identities=12%  Similarity=0.043  Sum_probs=164.9

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA  213 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  213 (451)
                      .=..+...+...|-...|..++++..           .|.-+|.+|+..|+..+|..+..+..++  +||...|..+.+.
T Consensus       400 ~q~~laell~slGitksAl~I~Erle-----------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE-----------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV  466 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH-----------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence            33446677788889999999887753           3677888999999999999988877773  6888888888888


Q ss_pred             HHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 013010          214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL  293 (451)
Q Consensus       214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  293 (451)
                      .....-+++|.++++......         -..+.....+.+           +++++.+.|+.-.+.. +.-..+|-.+
T Consensus       467 ~~d~s~yEkawElsn~~sarA---------~r~~~~~~~~~~-----------~fs~~~~hle~sl~~n-plq~~~wf~~  525 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISARA---------QRSLALLILSNK-----------DFSEADKHLERSLEIN-PLQLGTWFGL  525 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHHH---------HHhhccccccch-----------hHHHHHHHHHHHhhcC-ccchhHHHhc
Confidence            777777888888887643321         011111112244           7888888887655432 2234556555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 013010          294 IDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG  372 (451)
Q Consensus       294 i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g  372 (451)
                      -.+..+.++++.|.+.|......  .| +...||.+-.+|.+.|+-.+|...+.+..+.+  .-+...|...+....+.|
T Consensus       526 G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn--~~~w~iWENymlvsvdvg  601 (777)
T KOG1128|consen  526 GCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN--YQHWQIWENYMLVSVDVG  601 (777)
T ss_pred             cHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC--CCCCeeeechhhhhhhcc
Confidence            56667888999999999887765  56 46889999999999999999999999998877  344566777777788999


Q ss_pred             CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHH
Q 013010          373 RVLEARDFLAELVDGG-SVPREYTYKLVCDALN  404 (451)
Q Consensus       373 ~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~  404 (451)
                      .+++|++.+.+|.+.. -.-|......++.+..
T Consensus       602 e~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  602 EFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             cHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            9999999998887431 1114444444444433

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.13  E-value=3.1e-05  Score=73.57  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=106.5

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA  206 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  206 (451)
                      +.+.+......+++.+....+++.+..++.+..........-..|..++|+.|.+.|..++++.++..=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            34556778888899999899999999999988876433222334567999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010          207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY  254 (451)
Q Consensus       207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~  254 (451)
                      +|.||+.+.+.|++..|.++..+|..++.-  .+..|+...+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~--~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEF--DNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHHh
Confidence            999999999999999999999999888754  6667777777777776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.12  E-value=0.00072  Score=58.33  Aligned_cols=120  Identities=14%  Similarity=0.060  Sum_probs=62.6

Q ss_pred             cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH
Q 013010          217 VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG  296 (451)
Q Consensus       217 ~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~  296 (451)
                      .++.+++...++...+..   |.|...|..+...|...|           ++++|...|++..... +-+...+..+..+
T Consensus        52 ~~~~~~~i~~l~~~L~~~---P~~~~~w~~Lg~~~~~~g-----------~~~~A~~a~~~Al~l~-P~~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN---PQNSEQWALLGEYYLWRN-----------DYDNALLAYRQALQLR-GENAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            344455555555544443   245555666666666655           5556666665555432 2234444444444


Q ss_pred             H-HhcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          297 C-CKTYR--IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       297 ~-~~~g~--~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      + ...|+  .++|.+++++..+.+-. +..++..+-..+.+.|++++|+..|+++.+..
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            2 34444  35666666665554211 44555555555566666666666666665544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.12  E-value=0.0013  Score=64.90  Aligned_cols=215  Identities=13%  Similarity=0.014  Sum_probs=168.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010          173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC  252 (451)
Q Consensus       173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~  252 (451)
                      ..+...+.+.|-...|..+|+++         ..|..+|.+|+..|+..+|..+..+-.+.    +||...|..+.+...
T Consensus       402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhcc
Confidence            45677788899999999999876         45777889999999999999998887774    389999998888877


Q ss_pred             hcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010          253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY  332 (451)
Q Consensus       253 ~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  332 (451)
                      ...           -+++|.++++....+    -...++   ......++++++.+.|+.-.+.. +.-..+|-.+-.+.
T Consensus       469 d~s-----------~yEkawElsn~~sar----A~r~~~---~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~A  529 (777)
T KOG1128|consen  469 DPS-----------LYEKAWELSNYISAR----AQRSLA---LLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAA  529 (777)
T ss_pred             ChH-----------HHHHHHHHhhhhhHH----HHHhhc---cccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHH
Confidence            666           788999998765433    001111   11233789999999998765542 22567787777788


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchH
Q 013010          333 SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLL  412 (451)
Q Consensus       333 ~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a  412 (451)
                      .+.++++.|.+.|.......  +-+...||.+-.+|.+.|+-.+|...+.+..+.+ .-+-..|..-+....+-|.++.|
T Consensus       530 Lqlek~q~av~aF~rcvtL~--Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  530 LQLEKEQAAVKAFHRCVTLE--PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             HHHhhhHHHHHHHHHHhhcC--CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHH
Confidence            89999999999999988754  4556799999999999999999999999999887 44455666667778899999999


Q ss_pred             HHHHHHHHHh
Q 013010          413 DDGLRKRIRD  422 (451)
Q Consensus       413 ~~~~~~~~~~  422 (451)
                      .+..+++.+.
T Consensus       607 ~~A~~rll~~  616 (777)
T KOG1128|consen  607 IKAYHRLLDL  616 (777)
T ss_pred             HHHHHHHHHh
Confidence            9999888743

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.10  E-value=0.0026  Score=55.43  Aligned_cols=100  Identities=14%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK----TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~  342 (451)
                      +++-|.+.++.|.+-.   +..|.+-|..++.+    .+.+.+|+-+|++|-+. ..|+..+.+-...++...|++++|.
T Consensus       152 r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe  227 (299)
T KOG3081|consen  152 RFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAE  227 (299)
T ss_pred             HHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHH
Confidence            5555555555555431   33444444444432    23355555555555442 3455555555555555555555555


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAG  372 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g  372 (451)
                      .++++...+.  .-++.+...+|-.-...|
T Consensus       228 ~lL~eaL~kd--~~dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  228 SLLEEALDKD--AKDPETLANLIVLALHLG  255 (299)
T ss_pred             HHHHHHHhcc--CCCHHHHHHHHHHHHHhC
Confidence            5555555544  233344444443333333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.08  E-value=0.00053  Score=59.58  Aligned_cols=158  Identities=15%  Similarity=0.044  Sum_probs=100.3

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013010          136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC  215 (451)
Q Consensus       136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  215 (451)
                      ..+-..+--.|+-+....+........   ..+....+..++...+.|++..|...|.+.... -++|..+|+.+--+|-
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaald  145 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALD  145 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHH
Confidence            445555555666666666655544332   224445555677777777777777777777653 2567777777777777


Q ss_pred             hcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH
Q 013010          216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID  295 (451)
Q Consensus       216 ~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~  295 (451)
                      +.|+.++|..-|.+..+...   -+...++.|.-.|.-.|           +.+.|..++......+ .-|..+-..+..
T Consensus       146 q~Gr~~~Ar~ay~qAl~L~~---~~p~~~nNlgms~~L~g-----------d~~~A~~lll~a~l~~-~ad~~v~~NLAl  210 (257)
T COG5010         146 QLGRFDEARRAYRQALELAP---NEPSIANNLGMSLLLRG-----------DLEDAETLLLPAYLSP-AADSRVRQNLAL  210 (257)
T ss_pred             HccChhHHHHHHHHHHHhcc---CCchhhhhHHHHHHHcC-----------CHHHHHHHHHHHHhCC-CCchHHHHHHHH
Confidence            77777777777777666542   34556666666666666           6777777777666543 235555666666


Q ss_pred             HHHhcCCHHHHHHHHHH
Q 013010          296 GCCKTYRIERALELFDD  312 (451)
Q Consensus       296 ~~~~~g~~~~a~~~~~~  312 (451)
                      .....|++++|..+...
T Consensus       211 ~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         211 VVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHhhcCChHHHHhhccc
Confidence            66777777777666554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.08  E-value=6.1e-05  Score=71.62  Aligned_cols=125  Identities=9%  Similarity=0.106  Sum_probs=103.4

Q ss_pred             cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh
Q 013010          281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK--GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS  358 (451)
Q Consensus       281 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~  358 (451)
                      .+.+.+......+++.+....+++.+..++...+..  ....-..|..++|+.|.+.|..+.++++++.=...|+ -||.
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGi-F~D~  138 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGI-FPDN  138 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhccc-CCCh
Confidence            345567777888888888888888999988888765  2223355667999999999999999999998888888 8999


Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA  406 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  406 (451)
                      .+++.|++.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus       139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999999998887777888888777777776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.08  E-value=0.0086  Score=58.57  Aligned_cols=298  Identities=12%  Similarity=0.087  Sum_probs=177.6

Q ss_pred             ccCCCchhhhcCHHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCC---------CCc
Q 013010          100 AAYRDPQKVTLGLNKATEFYHWVERFFDFFHN---EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNG---------ELV  167 (451)
Q Consensus       100 ~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---------~~~  167 (451)
                      ..+++.|...++++.|..+|+..... .++.-   ..+|-.-...=.+..+++.|.++.++.....-.         .++
T Consensus       391 ~~faklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pv  469 (835)
T KOG2047|consen  391 VEFAKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPV  469 (835)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcH
Confidence            34456788888899999999887643 22211   223433344444667888888887765432111         111


Q ss_pred             ------cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH
Q 013010          168 ------TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV  241 (451)
Q Consensus       168 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~  241 (451)
                            +...|...++.--..|-++....+|+.+.+..+- ++...-.....+-...-++++.++|++=...- + .|++
T Consensus       470 Q~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF-k-~p~v  546 (835)
T KOG2047|consen  470 QARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF-K-WPNV  546 (835)
T ss_pred             HHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC-C-CccH
Confidence                  2234445555555567888888888888876543 22222221222333445778888887654432 1 2443


Q ss_pred             -HHHHHHHHHHHh-cCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHhCC
Q 013010          242 -YTYTILISSYCK-YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC--KTYRIERALELFDDMNKKG  317 (451)
Q Consensus       242 -~~~~~li~~~~~-~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g  317 (451)
                       ..|++.+.-+.+ -|.         ..++.|..+|++..+ |++|...-+--|+.+-.  +.|-...|+.++++.-.. 
T Consensus       547 ~diW~tYLtkfi~rygg---------~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-  615 (835)
T KOG2047|consen  547 YDIWNTYLTKFIKRYGG---------TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-  615 (835)
T ss_pred             HHHHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-
Confidence             345555554433 221         178899999999888 77765433322332221  457788889999885443 


Q ss_pred             CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHH---HHHHHHHcCCHHHHHHHHHHHHhC-CCCC
Q 013010          318 CIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP---IIHALCEAGRVLEARDFLAELVDG-GSVP  391 (451)
Q Consensus       318 ~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~-g~~p  391 (451)
                      +.+.  ...||+.|.--+..=-+....++|++..+.   -|+...-..   ..+.=++.|.++.|..+|..-.+- .-+.
T Consensus       616 v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~  692 (835)
T KOG2047|consen  616 VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRV  692 (835)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcC
Confidence            4442  467888887766666666777788877764   355544333   333446779999999998765432 2333


Q ss_pred             CHHHHHHHHHHHHhcCCCchHHHH
Q 013010          392 REYTYKLVCDALNAAEEPSLLDDG  415 (451)
Q Consensus       392 ~~~t~~~li~~~~~~g~~~~a~~~  415 (451)
                      +..-|.+.-.-=.+.|+-+...+.
T Consensus       693 ~~~fW~twk~FEvrHGnedT~keM  716 (835)
T KOG2047|consen  693 TTEFWDTWKEFEVRHGNEDTYKEM  716 (835)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHH
Confidence            456688887778888885544333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.06  E-value=0.011  Score=55.73  Aligned_cols=207  Identities=14%  Similarity=0.174  Sum_probs=150.5

Q ss_pred             ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-------HHHHHHHHHH---HhcCChHHHHHHHHHhhhCCCC
Q 013010          167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV-------YAYNVVINAL---CRVGNFNKARFLLEQMELPGFR  236 (451)
Q Consensus       167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~  236 (451)
                      .|-.+|--.++.-...|+.+...++|+.... +++|-.       ..|--+=.+|   ....+.+.+.++|+...+.   
T Consensus       320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIa-nvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l---  395 (677)
T KOG1915|consen  320 YNYDSWFDYLRLEESVGDKDRIRETYERAIA-NVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL---  395 (677)
T ss_pred             CCchHHHHHHHHHHhcCCHHHHHHHHHHHHc-cCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh---
Confidence            3556788888888888999999999999887 456622       1221111122   3468888999999888874   


Q ss_pred             CCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010          237 CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK  316 (451)
Q Consensus       237 ~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  316 (451)
                      +|....||.-+--.|++-.-       -..++..|.+++....  |.-|-..+|...|..=.+.+++|.+..+|+...+.
T Consensus       396 IPHkkFtFaKiWlmyA~feI-------Rq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~  466 (677)
T KOG1915|consen  396 IPHKKFTFAKIWLMYAQFEI-------RQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF  466 (677)
T ss_pred             cCcccchHHHHHHHHHHHHH-------HHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            45677787776666554320       0017778888887765  55788889999999889999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       317 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      + +-|..+|.-....=...|+.+.|..+|.-.............|-..|+-=...|.++.|..+|+++++.
T Consensus       467 ~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  467 S-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             C-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            4 227788888877778889999999999988774432222344555555556678999999999999865

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00092  Score=58.17  Aligned_cols=154  Identities=18%  Similarity=0.152  Sum_probs=82.7

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010          177 KVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM  256 (451)
Q Consensus       177 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~  256 (451)
                      ..|+..|++++|++......    ..+....+  ...+.+..+++-|.+.+++|.+..     +..|.+-|..++.+.-.
T Consensus       116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~id-----ed~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQID-----EDATLTQLAQAWVKLAT  184 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHccc-----hHHHHHHHHHHHHHHhc
Confidence            44666677777766665511    12222222  233455566666777777766542     45566666666554321


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010          257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN  336 (451)
Q Consensus       257 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g  336 (451)
                      -.       +.+.+|.-+|++|.+. ..|+..+.|-...++...|++++|..++++....... ++.|...+|-.-...|
T Consensus       185 gg-------ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G  255 (299)
T KOG3081|consen  185 GG-------EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG  255 (299)
T ss_pred             cc-------hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence            11       1566677777776542 4566666666666666677777777777766655322 3444444444333333


Q ss_pred             CH-HHHHHHHHHHHh
Q 013010          337 EI-DKAIEMMRKMQN  350 (451)
Q Consensus       337 ~~-~~A~~~~~~m~~  350 (451)
                      .. +-..+.+.+++.
T Consensus       256 kd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  256 KDAEVTERNLSQLKL  270 (299)
T ss_pred             CChHHHHHHHHHHHh
Confidence            32 333444445444

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.03  E-value=0.00019  Score=53.95  Aligned_cols=88  Identities=18%  Similarity=0.276  Sum_probs=69.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 013010          208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV  287 (451)
Q Consensus       208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~  287 (451)
                      ...|..|...+++...-.+|+.+++.|+. -|+..+|+.++.+.++.....   ..+..++-+.+.+|+.|...+++|+.
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~-lPsv~~Yn~VL~Si~~R~lD~---~~ie~kl~~LLtvYqDiL~~~lKP~~  104 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGIT-LPSVELYNKVLKSIAKRELDS---EDIENKLTNLLTVYQDILSNKLKPND  104 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCC-CCcHHHHHHHHHHHHHccccc---hhHHHHHHHHHHHHHHHHHhccCCcH
Confidence            34556666668888888888888888863 488888888888887765322   23334788899999999999999999


Q ss_pred             hhHHHHHHHHHh
Q 013010          288 VAYNCLIDGCCK  299 (451)
Q Consensus       288 ~~~~~li~~~~~  299 (451)
                      .||+.++..+.+
T Consensus       105 etYnivl~~Llk  116 (120)
T PF08579_consen  105 ETYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.03  E-value=0.00036  Score=56.87  Aligned_cols=97  Identities=8%  Similarity=-0.154  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA  213 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  213 (451)
                      .+..+...+...|++++|...|+.......   .+...|..+..++...|++++|...|+.....+ +.+..++..+..+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~  101 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQP---WSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVC  101 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence            355678888999999999999999988763   367789999999999999999999999999854 4578889999999


Q ss_pred             HHhcCChHHHHHHHHHhhhCC
Q 013010          214 LCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       214 ~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      +...|++++|...|+......
T Consensus       102 l~~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        102 LKMMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999998765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.02  E-value=0.002  Score=56.07  Aligned_cols=160  Identities=14%  Similarity=0.061  Sum_probs=111.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH
Q 013010          208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV  287 (451)
Q Consensus       208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~  287 (451)
                      ..+-..+.-.|+-+....+........   +-|.......+....+.|           ++.+|...+++.... -++|.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~---~~d~~ll~~~gk~~~~~g-----------~~~~A~~~~rkA~~l-~p~d~  134 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY---PKDRELLAAQGKNQIRNG-----------NFGEAVSVLRKAARL-APTDW  134 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC---cccHHHHHHHHHHHHHhc-----------chHHHHHHHHHHhcc-CCCCh
Confidence            444556666777777766666644332   245556666777777777           778888888877653 36677


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA  367 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  367 (451)
                      .+|+.+--+|.+.|+++.|..-|.+..+... -+...+|.|.-.|.-.|+.+.|..++......+  .-|...-..+...
T Consensus       135 ~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~--~ad~~v~~NLAl~  211 (257)
T COG5010         135 EAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP--AADSRVRQNLALV  211 (257)
T ss_pred             hhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC--CCchHHHHHHHHH
Confidence            8888888888888888888888877776521 145666777777777888888888888777655  4466667777777


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 013010          368 LCEAGRVLEARDFLAELV  385 (451)
Q Consensus       368 ~~~~g~~~~A~~l~~~m~  385 (451)
                      ....|++++|.++...-.
T Consensus       212 ~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         212 VGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HhhcCChHHHHhhccccc
Confidence            788888888887765433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.01  E-value=0.00046  Score=59.50  Aligned_cols=129  Identities=10%  Similarity=0.017  Sum_probs=104.5

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH-HHhcCC--H
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV-LGEEGL--V  185 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~-~~~~g~--~  185 (451)
                      .++.++++..++.....  -+.|...|..+...|...|++++|...+++..+....   +...+..+..+ +...|+  .
T Consensus        52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~---~~~~~~~lA~aL~~~~g~~~~  126 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE---NAELYAALATVLYYQAGQHMT  126 (198)
T ss_pred             chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCCCCc
Confidence            45567888888777653  4667889999999999999999999999999988633   66678888776 467777  5


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010          186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI  246 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~  246 (451)
                      ++|.+++++..+.+ +-+..++..+...+...|++++|...|+++.+..   +|+..-+..
T Consensus       127 ~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~---~~~~~r~~~  183 (198)
T PRK10370        127 PQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLN---SPRVNRTQL  183 (198)
T ss_pred             HHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCccHHHH
Confidence            99999999999865 2367888888999999999999999999998875   466655443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.01  E-value=0.018  Score=56.38  Aligned_cols=384  Identities=11%  Similarity=0.041  Sum_probs=223.3

Q ss_pred             HHHHHHHhhcCCccccccCCcC----C--CCCCCChhhHHHHHhccChhhh---cCCc-c------cccCCCCCCCChhH
Q 013010           16 QQVLPLMLKNVPFDAKLAASTT----K--TQNPFTIESVADVLKSIPRFFF---QSPR-S------IGRQTGFRHRTPLR   79 (451)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~~v~~vl~~~~~~~~---~~~~-w------~~~~~~f~h~~~~~   79 (451)
                      .++-.+.++..|-+..+|-+=.    .  -...+|......|-+-|.+...   ..+| |      .-.|+...|+..+-
T Consensus        46 ~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~~iT~tR~tf  125 (835)
T KOG2047|consen   46 NLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQGLITRTRRTF  125 (835)
T ss_pred             HHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcchHHHHHHHH
Confidence            3445666777776666544210    0  1122244444444443433211   3333 3      34577777777776


Q ss_pred             HHHHHHhh---hhhhhhhhhcCcccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHH
Q 013010           80 QRILKKEA---YNIANNVLVLGPAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLK  156 (451)
Q Consensus        80 ~~~l~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~  156 (451)
                      .+.|...|   +.--|..++.-       -...+-++-++.+++...+   +  +...-+-.|..+++.+++++|.+.+.
T Consensus       126 drALraLpvtqH~rIW~lyl~F-------v~~~~lPets~rvyrRYLk---~--~P~~~eeyie~L~~~d~~~eaa~~la  193 (835)
T KOG2047|consen  126 DRALRALPVTQHDRIWDLYLKF-------VESHGLPETSIRVYRRYLK---V--APEAREEYIEYLAKSDRLDEAAQRLA  193 (835)
T ss_pred             HHHHHhCchHhhccchHHHHHH-------HHhCCChHHHHHHHHHHHh---c--CHHHHHHHHHHHHhccchHHHHHHHH
Confidence            65555333   22334443321       2224446788999888873   3  33447778899999999999999988


Q ss_pred             HHHHcC----CCCCccHHhHHHHHHHHHhcCCHHH---HHHHHHHHhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHH
Q 013010          157 DMSRRG----NGELVTTSSVTCLIKVLGEEGLVNE---ALATFYRMKQFRCRPD--VYAYNVVINALCRVGNFNKARFLL  227 (451)
Q Consensus       157 ~m~~~~----~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~  227 (451)
                      ..+...    ...+.+...|..+-+...++-+.-.   +.++++.+..+  -+|  ...|++|.+-|.+.|.++.|.++|
T Consensus       194 ~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvy  271 (835)
T KOG2047|consen  194 TVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVY  271 (835)
T ss_pred             HhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            776542    1112355667777777666554433   33444444432  344  467899999999999999999999


Q ss_pred             HHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh-----------HHHHHHHHHHHHHHHHHHhcC-----------CCC
Q 013010          228 EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR-----------KAIRRRIWEANHLFRLMLFKG-----------FVP  285 (451)
Q Consensus       228 ~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~-----------~~~~~~~~~a~~~~~~m~~~~-----------~~~  285 (451)
                      ++....-    .++.-|+.+.++|+.-.....+.           +....+++-.+.-|+.+...+           -+-
T Consensus       272 eeai~~v----~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~  347 (835)
T KOG2047|consen  272 EEAIQTV----MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH  347 (835)
T ss_pred             HHHHHhh----eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence            9987653    45566777777776543111000           001113344444454444321           011


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh-
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP------NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS-  358 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p------~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-  358 (451)
                      ++..|..-+.  +..|+..+-..+|.+.... +.|      -...|..+...|-..|+++.|..+|++..+...  +.+ 
T Consensus       348 nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y--~~v~  422 (835)
T KOG2047|consen  348 NVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY--KTVE  422 (835)
T ss_pred             cHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc--cchH
Confidence            2333333222  3456677777788877654 222      235678888899999999999999999887654  222 


Q ss_pred             ---hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC----------CCC-------CHHHHHHHHHHHHhcCCCchHHHHHHH
Q 013010          359 ---SSYTPIIHALCEAGRVLEARDFLAELVDGG----------SVP-------REYTYKLVCDALNAAEEPSLLDDGLRK  418 (451)
Q Consensus       359 ---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----------~~p-------~~~t~~~li~~~~~~g~~~~a~~~~~~  418 (451)
                         .+|..-...=.++.+++.|+++.+.....-          ..|       +...|...++..-..|-++.-..++++
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence               234444444456677888888877654211          111       123455556666667777766677776


Q ss_pred             HHHh
Q 013010          419 RIRD  422 (451)
Q Consensus       419 ~~~~  422 (451)
                      +++.
T Consensus       503 iidL  506 (835)
T KOG2047|consen  503 IIDL  506 (835)
T ss_pred             HHHH
Confidence            6643

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.99  E-value=0.0042  Score=56.29  Aligned_cols=299  Identities=12%  Similarity=0.098  Sum_probs=144.8

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC------------CCCCc------
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG------------NGELV------  167 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~------------~~~~~------  167 (451)
                      +-+.|+.++|+..+..+.+.  -.++...+-.|...+.-.|.+.+|..+-....+..            .....      
T Consensus        67 ~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh  144 (557)
T KOG3785|consen   67 YFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFH  144 (557)
T ss_pred             HHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHH
Confidence            44567789999999888764  34445555555555555677777766643322210            00000      


Q ss_pred             -----cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCCCCCH
Q 013010          168 -----TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN-ALCRVGNFNKARFLLEQMELPGFRCPPDV  241 (451)
Q Consensus       168 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~~p~~  241 (451)
                           +...--+|....-..-.+.+|+++|......  .|+-...|.-+. +|.+..-++-+.++++-..+.-   |.++
T Consensus       145 ~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~---pdSt  219 (557)
T KOG3785|consen  145 SSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDST  219 (557)
T ss_pred             HHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcH
Confidence                 0001112222222334677888888887764  355555665444 4456666777777777665542   2344


Q ss_pred             HHHHHHHHHHHhcCCchhhhHH---HH---------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 013010          242 YTYTILISSYCKYGMQTGCRKA---IR---------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC  297 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~---~~---------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  297 (451)
                      .+-|.......+.-.-..+...   +.                     +.-+.|++++-.+.+.  -|.  .--.|+--|
T Consensus       220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYy  295 (557)
T KOG3785|consen  220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYY  295 (557)
T ss_pred             HHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeee
Confidence            4444443333322111111100   00                     0112222222222110  110  111122234


Q ss_pred             HhcCCHHHHHHHHHHH--------------------------------------HhCCCCCCHH-HHHHHHHHHHhcCCH
Q 013010          298 CKTYRIERALELFDDM--------------------------------------NKKGCIPNRV-TYNSFIRYYSVVNEI  338 (451)
Q Consensus       298 ~~~g~~~~a~~~~~~m--------------------------------------~~~g~~p~~~-t~~~li~~~~~~g~~  338 (451)
                      .+.++..+|..+.+++                                      .+.+..-|.. --.++..++.-..++
T Consensus       296 L~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qF  375 (557)
T KOG3785|consen  296 LNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQF  375 (557)
T ss_pred             cccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHH
Confidence            4455555555444443                                      2222221111 112233333334455


Q ss_pred             HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCCchHHHHHH
Q 013010          339 DKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK-LVCDALNAAEEPSLLDDGLR  417 (451)
Q Consensus       339 ~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~li~~~~~~g~~~~a~~~~~  417 (451)
                      ++++-.++.++.-.. .-|...| .+..+++..|++.+|.++|-......++ |..+|. .|.++|.++|+++.|.+++-
T Consensus       376 ddVl~YlnSi~sYF~-NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~l  452 (557)
T KOG3785|consen  376 DDVLTYLNSIESYFT-NDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMML  452 (557)
T ss_pred             HHHHHHHHHHHHHhc-Ccchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            666666665554332 2333333 4567778888888888888666544444 445554 45678888888887765544


Q ss_pred             H
Q 013010          418 K  418 (451)
Q Consensus       418 ~  418 (451)
                      +
T Consensus       453 k  453 (557)
T KOG3785|consen  453 K  453 (557)
T ss_pred             h
Confidence            3

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.98  E-value=0.0061  Score=62.58  Aligned_cols=144  Identities=14%  Similarity=0.065  Sum_probs=94.0

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI  246 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~  246 (451)
                      +...+-.|.......|.+++|..+++...+.  .|| ......+...+.+.+++++|+..+++.....   |-+......
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~---p~~~~~~~~  159 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG---SSSAREILL  159 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC---CCCHHHHHH
Confidence            4556667777777777777777777777763  454 4445566667777777777777777777665   235556666


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010          247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN  326 (451)
Q Consensus       247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  326 (451)
                      +..++.+.|           ++++|..+|++....+ +-+..++..+-.++-+.|+.++|...|+...+.- .|....|+
T Consensus       160 ~a~~l~~~g-----------~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~  226 (694)
T PRK15179        160 EAKSWDEIG-----------QSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLT  226 (694)
T ss_pred             HHHHHHHhc-----------chHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHH
Confidence            666777777           7777777777777632 2235666666777777777777777777766542 23444554


Q ss_pred             HHH
Q 013010          327 SFI  329 (451)
Q Consensus       327 ~li  329 (451)
                      .++
T Consensus       227 ~~~  229 (694)
T PRK15179        227 RRL  229 (694)
T ss_pred             HHH
Confidence            443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.98  E-value=0.012  Score=59.66  Aligned_cols=101  Identities=17%  Similarity=0.169  Sum_probs=48.1

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHH--HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 013010          145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL--GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK  222 (451)
Q Consensus       145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  222 (451)
                      .+++..|......+.++..    +. .|..++.++  .+.|+.++|..+++.....+.. |..|..++-..|-+.++.++
T Consensus        22 ~~qfkkal~~~~kllkk~P----n~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHP----NA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCC----Cc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            3455555555555544431    11 133333333  2345555555555554443322 45555555555555555555


Q ss_pred             HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      |..+|++.....    |+..-...+..+|.+.+
T Consensus        96 ~~~~Ye~~~~~~----P~eell~~lFmayvR~~  124 (932)
T KOG2053|consen   96 AVHLYERANQKY----PSEELLYHLFMAYVREK  124 (932)
T ss_pred             HHHHHHHHHhhC----CcHHHHHHHHHHHHHHH
Confidence            555555554432    44444445555555554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.98  E-value=0.00076  Score=54.97  Aligned_cols=112  Identities=12%  Similarity=0.009  Sum_probs=90.0

Q ss_pred             HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       273 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      .++++..+.  .|+  .+..+...+...|++++|...|+...... +.+...|..+-..+...|++++|...|+......
T Consensus        14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            445554443  343  34456778889999999999999988763 3378888999999999999999999999999876


Q ss_pred             CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010          353 HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE  393 (451)
Q Consensus       353 ~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  393 (451)
                        +.+...+..+-.++...|++++|...|+..++.  .|+.
T Consensus        89 --p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~  125 (144)
T PRK15359         89 --ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYAD  125 (144)
T ss_pred             --CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence              678888999999999999999999999998874  3543

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.98  E-value=0.00051  Score=65.97  Aligned_cols=221  Identities=13%  Similarity=0.034  Sum_probs=167.7

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010          179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT  258 (451)
Q Consensus       179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~  258 (451)
                      +.+.|++.+|.-.|+...+.+ +-+...|--|.......++-..|+..+.+..+..   |-|....-+|.-.|...|   
T Consensus       295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld---P~NleaLmaLAVSytNeg---  367 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD---PTNLEALMALAVSYTNEG---  367 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC---CccHHHHHHHHHHHhhhh---
Confidence            467899999999999988864 3468889999888888898889999999888775   357888899999999999   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 013010          259 GCRKAIRRRIWEANHLFRLMLFKGFV--------PDVVAYNCLIDGCCKTYRIERALELFDDMN-KKGCIPNRVTYNSFI  329 (451)
Q Consensus       259 ~~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~t~~~li  329 (451)
                              .-.+|+..++.......+        ++...-+.  ..+.....+....++|-++. ..+..+|......|-
T Consensus       368 --------~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG  437 (579)
T KOG1125|consen  368 --------LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG  437 (579)
T ss_pred             --------hHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence                    677888888887654210        01100000  12222333455666666654 455557888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010          330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEE  408 (451)
Q Consensus       330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~  408 (451)
                      -.|.-.|++++|...|+......  +-|..+||.|-..++...+.++|...|.+.++  +.|+ +....-|.-+|...|.
T Consensus       438 VLy~ls~efdraiDcf~~AL~v~--Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~  513 (579)
T KOG1125|consen  438 VLYNLSGEFDRAVDCFEAALQVK--PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGA  513 (579)
T ss_pred             HHHhcchHHHHHHHHHHHHHhcC--CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhh
Confidence            88889999999999999999876  67888999999999999999999999999987  4565 2333445567889999


Q ss_pred             CchHHHHHHHHH
Q 013010          409 PSLLDDGLRKRI  420 (451)
Q Consensus       409 ~~~a~~~~~~~~  420 (451)
                      +++|.+.+-..+
T Consensus       514 ykEA~~hlL~AL  525 (579)
T KOG1125|consen  514 YKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHHHH
Confidence            998888777665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0067  Score=55.06  Aligned_cols=286  Identities=12%  Similarity=0.101  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHH-HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh--cCCHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMG-IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE--EGLVNEA  188 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll-~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A  188 (451)
                      ..+|++++......   .|+-...|.-+ -.|.+..-++-+.+++.-..+....   ++...|.......+  +|+..++
T Consensus       167 YQeAIdvYkrvL~d---n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd---StiA~NLkacn~fRl~ngr~ae~  240 (557)
T KOG3785|consen  167 YQEAIDVYKRVLQD---NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD---STIAKNLKACNLFRLINGRTAED  240 (557)
T ss_pred             HHHHHHHHHHHHhc---ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC---cHHHHHHHHHHHhhhhccchhHH
Confidence            68999999988743   44555555533 4466778888888888777665322   44444444433333  2322211


Q ss_pred             HH------------HHHHHhhCC------------CCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC
Q 013010          189 LA------------TFYRMKQFR------------CRPD-----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP  239 (451)
Q Consensus       189 ~~------------~~~~m~~~g------------~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p  239 (451)
                      ..            .-+.+...+            +-|.     +..--.|+--|.+.+++.+|..+.+++.-      .
T Consensus       241 E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P------t  314 (557)
T KOG3785|consen  241 EKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP------T  314 (557)
T ss_pred             HHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC------C
Confidence            10            111111111            1111     12223344557889999999998887652      2


Q ss_pred             CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010          240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV-AYNCLIDGCCKTYRIERALELFDDMNKKGC  318 (451)
Q Consensus       240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  318 (451)
                      +..-|-.-.-.+...|...+.++    .+.-|.+.|+-.-+++..-|+. .-.++.+.+.-..+++++.-.++..+.--.
T Consensus       315 tP~EyilKgvv~aalGQe~gSre----HlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~  390 (557)
T KOG3785|consen  315 TPYEYILKGVVFAALGQETGSRE----HLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT  390 (557)
T ss_pred             ChHHHHHHHHHHHHhhhhcCcHH----HHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33333332333445555544444    5666666666555554443332 233344444455556666666655554422


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHH-HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HH
Q 013010          319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT-PIIHALCEAGRVLEARDFLAELVDGGSVPREY-TY  396 (451)
Q Consensus       319 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-t~  396 (451)
                      .-|...|| +.++++..|++.+|+++|-.+....+  -|..+|. .|.+.|.+.+.++-|.+++-.+.   ...+.. ..
T Consensus       391 NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i--kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLL  464 (557)
T KOG3785|consen  391 NDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI--KNKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLL  464 (557)
T ss_pred             CcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh--hhhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHH
Confidence            22333332 45566666666666666655443321  2334443 33345556666666655543322   222222 22


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHH
Q 013010          397 KLVCDALNAAEEPSLLDDGLRKR  419 (451)
Q Consensus       397 ~~li~~~~~~g~~~~a~~~~~~~  419 (451)
                      ..+.+-|-+++++=-+.+.++..
T Consensus       465 qlIAn~CYk~~eFyyaaKAFd~l  487 (557)
T KOG3785|consen  465 QLIANDCYKANEFYYAAKAFDEL  487 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHH
Confidence            33344455555544444444443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.96  E-value=0.00012  Score=54.91  Aligned_cols=79  Identities=19%  Similarity=0.206  Sum_probs=56.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHhhhCCCCCCCCHHH
Q 013010          173 TCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVG--------NFNKARFLLEQMELPGFRCPPDVYT  243 (451)
Q Consensus       173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~g~~~~p~~~~  243 (451)
                      ..-|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..        ++-.++.+|++|...+++  |+..|
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lK--P~~et  106 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLK--PNDET  106 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccC--CcHHH
Confidence            3455556666777788888888887777 778888888877776542        234567777888777754  88888


Q ss_pred             HHHHHHHHHh
Q 013010          244 YTILISSYCK  253 (451)
Q Consensus       244 ~~~li~~~~~  253 (451)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            8888877665

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.93  E-value=1.3e-05  Score=45.96  Aligned_cols=29  Identities=52%  Similarity=0.974  Sum_probs=17.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 013010          289 AYNCLIDGCCKTYRIERALELFDDMNKKG  317 (451)
Q Consensus       289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g  317 (451)
                      +||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            55666666666666666666666665554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.92  E-value=1.5e-05  Score=45.75  Aligned_cols=29  Identities=28%  Similarity=0.641  Sum_probs=16.4

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 013010          360 SYTPIIHALCEAGRVLEARDFLAELVDGG  388 (451)
Q Consensus       360 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g  388 (451)
                      +|+.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.90  E-value=0.00091  Score=54.62  Aligned_cols=128  Identities=15%  Similarity=0.085  Sum_probs=91.3

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHH
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV--YAYNVVI  211 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li  211 (451)
                      .|..++..+. .++...+...++.+.+............-.+...+...|++++|...|+........|+.  ...-.+.
T Consensus        14 ~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            4555555553 888898999999998876443222333344557788899999999999999986522321  2344566


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL  277 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~  277 (451)
                      ..+...|++++|+..++......    .....+....+.|.+.|           +.++|...|+.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~----~~~~~~~~~Gdi~~~~g-----------~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEA----FKALAAELLGDIYLAQG-----------DYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcc----hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHH
Confidence            77888999999999997754433    45567778888999999           77888887764

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.89  E-value=0.0027  Score=65.09  Aligned_cols=184  Identities=8%  Similarity=0.065  Sum_probs=142.2

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA  206 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  206 (451)
                      .++.+...+-.|.....+.|.+++|..+++...+....   +......+...+.+.+++++|+..+++..... +-+...
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd---~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~  156 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD---SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSARE  156 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHH
Confidence            45667888888999999999999999999999998532   56678888999999999999999999999864 234666


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010          207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD  286 (451)
Q Consensus       207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~  286 (451)
                      .+.+-.++.+.|++++|..+|++....+   +-+..++..+-..+-..|           +.++|...|+...+. ..+.
T Consensus       157 ~~~~a~~l~~~g~~~~A~~~y~~~~~~~---p~~~~~~~~~a~~l~~~G-----------~~~~A~~~~~~a~~~-~~~~  221 (694)
T PRK15179        157 ILLEAKSWDEIGQSEQADACFERLSRQH---PEFENGYVGWAQSLTRRG-----------ALWRARDVLQAGLDA-IGDG  221 (694)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHh-hCcc
Confidence            6777788899999999999999999854   235889999999999999           999999999998764 2344


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhc
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPNRVTYNSFIRYYSVV  335 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~  335 (451)
                      ...|+..+.      ++..-...++.+.-.    |...........|..|.+.
T Consensus       222 ~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        222 ARKLTRRLV------DLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             hHHHHHHHH------HHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            555655443      333445556665543    3333455566677777665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.87  E-value=0.013  Score=58.60  Aligned_cols=220  Identities=10%  Similarity=0.038  Sum_probs=152.6

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHH
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVY  205 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~  205 (451)
                      .+.-|...|..|.-++...|+++.+-+.|++...--+.   ..+.|+.+-..|...|.-..|..++++-....-.| |..
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~---~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s  394 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG---EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS  394 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh---hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch
Confidence            34567889999999999999999999999987765433   56679999999999999999999998876643234 444


Q ss_pred             HHHHHHHHHHh-cCChHHHHHHHHHhhhC--CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010          206 AYNVVINALCR-VGNFNKARFLLEQMELP--GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG  282 (451)
Q Consensus       206 ~~~~li~~~~~-~g~~~~a~~~~~~m~~~--g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~  282 (451)
                      .+-..-..|.+ .+.+++++.+-.+....  +..-.-....|..+--+|........-...-.....++++.+++..+.+
T Consensus       395 ~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d  474 (799)
T KOG4162|consen  395 VLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD  474 (799)
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            44444444543 46677777666665551  1110124456666666665543211111111124567888888887653


Q ss_pred             -CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010          283 -FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       283 -~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                       -.|++.-|-++  -|+-.++++.|.+..++..+.+-.-+...|..|...+...+++.+|+.+.+.....
T Consensus       475 ~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  475 PTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             CCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence             34444444333  36677899999999999998866678999999999999999999999999876654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.87  E-value=0.0011  Score=53.36  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=85.6

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH  366 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  366 (451)
                      ......+...+...|++++|.+.++.+...+ +.+...+..+...|...|++++|..+++...+.+  +.+...+..+-.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~la~   93 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--PDDPRPYFHAAE   93 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCChHHHHHHHH
Confidence            3455667777888999999999999988764 3367888888889999999999999999988765  566777778888


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010          367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLV  399 (451)
Q Consensus       367 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  399 (451)
                      .|...|++++|...++...+.  .|+...+..+
T Consensus        94 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~  124 (135)
T TIGR02552        94 CLLALGEPESALKALDLAIEI--CGENPEYSEL  124 (135)
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--ccccchHHHH
Confidence            899999999999999888874  3554444333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.86  E-value=0.00085  Score=53.95  Aligned_cols=109  Identities=10%  Similarity=-0.010  Sum_probs=88.9

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +......+...+...|++++|.+.++.....+.   .+...+..+...+...|++++|..+|+...+.+ +.+...+..+
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l   91 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP---YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHA   91 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence            345566778888899999999999999988752   266778899999999999999999999988764 4467788888


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      ...|...|++++|...|+...+..    |+...+..+
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~  124 (135)
T TIGR02552        92 AECLLALGEPESALKALDLAIEIC----GENPEYSEL  124 (135)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhc----cccchHHHH
Confidence            889999999999999999988765    555444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.86  E-value=0.00049  Score=58.34  Aligned_cols=105  Identities=20%  Similarity=0.267  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc----------------CC
Q 013010          239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT----------------YR  302 (451)
Q Consensus       239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----------------g~  302 (451)
                      .+..+|..+++.|.+.....      +|.++=....+..|.+-|+.-|..+|+.||+.+=+.                .+
T Consensus        45 k~K~~F~~~V~~f~~~~~~R------RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Q  118 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRR------RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQ  118 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCC------cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHH
Confidence            58889999999988763111      126777778888999999999999999999988542                13


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 013010          303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE-IDKAIEMMRKMQ  349 (451)
Q Consensus       303 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~~~~~m~  349 (451)
                      -+-|.+++++|...|+-||..|+..|++.+.+.+. +.+..++.-.|.
T Consensus       119 q~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  119 QECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             HHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            45566777777777777777777777777665554 233444443333

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.83  E-value=0.0018  Score=61.49  Aligned_cols=125  Identities=18%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 013010          206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP  285 (451)
Q Consensus       206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~  285 (451)
                      ....++..+...++++.|..+|+++.+..    |+.  ...++..+...+           +-.+|.+++++..+. .+-
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev--~~~LA~v~l~~~-----------~E~~AI~ll~~aL~~-~p~  232 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD----PEV--AVLLARVYLLMN-----------EEVEAIRLLNEALKE-NPQ  232 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC----CcH--HHHHHHHHHhcC-----------cHHHHHHHHHHHHHh-CCC
Confidence            34556667777889999999999999875    664  345777777766           666888888887754 234


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      +....+.-...|.+.++++.|.++.+++.+.  .| +..+|..|..+|...|+++.|+..++.+.-
T Consensus       233 d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  233 DSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            6667777777888999999999999998886  56 467999999999999999999999987763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.041  Score=53.50  Aligned_cols=115  Identities=10%  Similarity=0.022  Sum_probs=80.7

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH--HHHHHH--h
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC--LIKVLG--E  181 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~--li~~~~--~  181 (451)
                      +...+++++|+.....+..  +.+.+...+..=+.++.+.+++++|..+.+.-...        .+++.  +=.+||  +
T Consensus        22 ~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------~~~~~~~fEKAYc~Yr   91 (652)
T KOG2376|consen   22 HGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------LVINSFFFEKAYCEYR   91 (652)
T ss_pred             hccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------hhcchhhHHHHHHHHH
Confidence            3456778999999999885  34556667777788889999999999665442211        12222  345565  5


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCC
Q 013010          182 EGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGF  235 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  235 (451)
                      .+..++|+..++     |+.++ ..+-..-...+.+.|++++|.++|+.+.+.+.
T Consensus        92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~  141 (652)
T KOG2376|consen   92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNS  141 (652)
T ss_pred             cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            789999999988     33333 33555556678889999999999999966553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.79  E-value=0.017  Score=52.33  Aligned_cols=254  Identities=12%  Similarity=0.049  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHH-HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhH------------HHHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCK-EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSV------------TCLIKV  178 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------------~~li~~  178 (451)
                      -+.|+.=|....   ..+||...-. .-...+.+.|.++.|..=|+.+.+...........+            ...+..
T Consensus        88 sk~al~Dl~rVl---elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s  164 (504)
T KOG0624|consen   88 SKAALQDLSRVL---ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKS  164 (504)
T ss_pred             CccchhhHHHHH---hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHH
Confidence            334444444443   2455543221 233567889999999999999988754322222222            233555


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010          179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT  258 (451)
Q Consensus       179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~  258 (451)
                      +.-.|+...|+.....+.+-. +-|...|..-..+|...|++..|..=+....+...   .++.++.-+-..+...|   
T Consensus       165 ~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~---DnTe~~ykis~L~Y~vg---  237 (504)
T KOG0624|consen  165 ASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ---DNTEGHYKISQLLYTVG---  237 (504)
T ss_pred             HhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc---cchHHHHHHHHHHHhhh---
Confidence            677899999999999988742 34888888888999999999999887777666543   47777777788888888   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh----HHHH---------HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 013010          259 GCRKAIRRRIWEANHLFRLMLFKGFVPDVVA----YNCL---------IDGCCKTYRIERALELFDDMNKKGCIPNRVTY  325 (451)
Q Consensus       259 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~  325 (451)
                              +.+.++...++-.+.  .||...    |..|         +......++|.++.+..+...+..-.....+|
T Consensus       238 --------d~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~  307 (504)
T KOG0624|consen  238 --------DAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRY  307 (504)
T ss_pred             --------hHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceee
Confidence                    666666666665543  444322    1111         11234456777777777766665322123333


Q ss_pred             ---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          326 ---NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       326 ---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                         ..+-.+|...+++.+|++...+.....  +.|+.++.--..+|.-...+++|+.=|+...+.
T Consensus       308 ~~~r~~c~C~~~d~~~~eAiqqC~evL~~d--~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  308 NGFRVLCTCYREDEQFGEAIQQCKEVLDID--PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             eeeheeeecccccCCHHHHHHHHHHHHhcC--chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence               344556667788999999998888754  455777777777887777888888877776654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.02  Score=49.76  Aligned_cols=186  Identities=13%  Similarity=0.096  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHHhh---CC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH-HHHhcCC
Q 013010          183 GLVNEALATFYRMKQ---FR-CRPDVYA-YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS-SYCKYGM  256 (451)
Q Consensus       183 g~~~~A~~~~~~m~~---~g-~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~-~~~~~g~  256 (451)
                      .+.++..+++.++..   .| ..++..+ |..++-+....|+.+.|...++++...-    |...-...|=. -+-..| 
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f----p~S~RV~~lkam~lEa~~-  100 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF----PGSKRVGKLKAMLLEATG-  100 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC----CCChhHHHHHHHHHHHhh-
Confidence            345555555555533   12 3444433 3344455556666667777766665543    22211111111 112223 


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010          257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN  336 (451)
Q Consensus       257 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g  336 (451)
                                .+++|.++++...+.. +.|..++.-=+...-..|+--+|++-+.+..+. +.-|...|.-+-..|...|
T Consensus       101 ----------~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen  101 ----------NYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             ----------chhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHh
Confidence                      5667777777766554 445555555555555556655666666665554 2346777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC---CHHHHHHHHHHHHhC
Q 013010          337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG---RVLEARDFLAELVDG  387 (451)
Q Consensus       337 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~  387 (451)
                      ++++|.-.++++.-..  +.++..|..+.+.+.-.|   +..-|.++|.+.++.
T Consensus       169 ~f~kA~fClEE~ll~~--P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQ--PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            7777777777776543  344444445555443333   345566666666553

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.78  E-value=0.0012  Score=51.66  Aligned_cols=102  Identities=11%  Similarity=0.038  Sum_probs=80.2

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVV  210 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~l  210 (451)
                      .++-.+...+.+.|++++|.+.+..+.............+..+...+.+.|+++.|...|+.+....  .......+..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            3456677888889999999999999987753322234567778899999999999999999988742  11225667778


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCC
Q 013010          211 INALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      ..++...|+.++|.+.++++....
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHC
Confidence            888899999999999999998875

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.77  E-value=0.019  Score=54.53  Aligned_cols=136  Identities=15%  Similarity=0.151  Sum_probs=73.0

Q ss_pred             HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHHH
Q 013010          215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNCL  293 (451)
Q Consensus       215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l  293 (451)
                      ...|++++|++.+..+...-   |-|..-.......+.+.+           +..+|.+.++.+...  .|+ ....-.+
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~---P~N~~~~~~~~~i~~~~n-----------k~~~A~e~~~kal~l--~P~~~~l~~~~  380 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQ---PDNPYYLELAGDILLEAN-----------KAKEAIERLKKALAL--DPNSPLLQLNL  380 (484)
T ss_pred             HHhcccchHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHhc--CCCccHHHHHH
Confidence            34555666666666655542   234444445555556665           556666666666543  343 2333344


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010          294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR  373 (451)
Q Consensus       294 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~  373 (451)
                      -.+|.+.|++.+|..+++...... +-|+..|..|-++|...|+..++..-..+                   +|...|+
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE-------------------~~~~~G~  440 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE-------------------GYALAGR  440 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH-------------------HHHhCCC
Confidence            455666666666666666555442 22556666666666666665555544333                   2344555


Q ss_pred             HHHHHHHHHHHHh
Q 013010          374 VLEARDFLAELVD  386 (451)
Q Consensus       374 ~~~A~~l~~~m~~  386 (451)
                      ++.|...+....+
T Consensus       441 ~~~A~~~l~~A~~  453 (484)
T COG4783         441 LEQAIIFLMRASQ  453 (484)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666655555543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.77  E-value=0.0014  Score=62.13  Aligned_cols=123  Identities=17%  Similarity=0.139  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010          289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL  368 (451)
Q Consensus       289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  368 (451)
                      ...+|+..+...++++.|.++++++.+..  |+  ....++..+...++-.+|.+++++..+..  +-+......-...|
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~--p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN--PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            34556666777899999999999999884  55  44457888888899999999999998765  45666666677778


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010          369 CEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKR  419 (451)
Q Consensus       369 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~  419 (451)
                      .+.++++.|.++.+++.+.  .|+ ..+|..|.++|.+.|+++.|...+..+
T Consensus       245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            8999999999999999874  465 459999999999999999998777755

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.76  E-value=0.00031  Score=59.49  Aligned_cols=87  Identities=22%  Similarity=0.308  Sum_probs=62.3

Q ss_pred             cHHhHHHHHHHHHh-----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHHH
Q 013010          168 TTSSVTCLIKVLGE-----EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV----------------GNFNKARFL  226 (451)
Q Consensus       168 ~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------------g~~~~a~~~  226 (451)
                      +-.+|..++..|.+     .|.++-....+..|.+.|+.-|..+|+.||+.+=+.                .+-+-|+++
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l  125 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL  125 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence            33445555555543     356666666667777777777777777777765442                234679999


Q ss_pred             HHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010          227 LEQMELPGFRCPPDVYTYTILISSYCKYGM  256 (451)
Q Consensus       227 ~~~m~~~g~~~~p~~~~~~~li~~~~~~g~  256 (451)
                      +++|...|+-  ||..|+..+++.+++.+.
T Consensus       126 L~qME~~gV~--Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  126 LEQMENNGVM--PDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHcCCC--CcHHHHHHHHHHhccccH
Confidence            9999999975  999999999999998883

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.73  E-value=0.073  Score=54.31  Aligned_cols=229  Identities=14%  Similarity=0.032  Sum_probs=154.2

Q ss_pred             cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH--HHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIV--FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      +..++|+.-...+.++++-.+    |...+.+  +.+.|+.++|..+++.....+..   |..|...+-.+|-..++.++
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~---D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKGT---DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC---chHHHHHHHHHHHHHhhhhH
Confidence            447899999888887643332    4444544  46889999999988887665533   77899999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCc-hhhhHHHHH
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ-TGCRKAIRR  266 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~-~~~~~~~~~  266 (451)
                      |..+|+...+.  .|+......+..+|.|.+++.+-.+.--+|-+.   .|-+.+.+-++++.+...-.. +....  .-
T Consensus        96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~---~pk~~yyfWsV~Slilqs~~~~~~~~~--~i  168 (932)
T KOG2053|consen   96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN---FPKRAYYFWSVISLILQSIFSENELLD--PI  168 (932)
T ss_pred             HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcccchHHHHHHHHHHhccCCccccc--ch
Confidence            99999999874  577777778888999999887655544444433   134556666666666554321 11111  01


Q ss_pred             HHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELF-DDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~-~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                      -+.-|.+.++.+.+.+-+. +..-.-.-...+-..|.+++|.+++ ....+.-..-+...-+--+..+...+++.+..++
T Consensus       169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l  248 (932)
T KOG2053|consen  169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFEL  248 (932)
T ss_pred             hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHH
Confidence            3445667777776543111 1222222233445678899999998 4454443333555556778888889999999999


Q ss_pred             HHHHHhcC
Q 013010          345 MRKMQNLN  352 (451)
Q Consensus       345 ~~~m~~~~  352 (451)
                      -.++...+
T Consensus       249 ~~~Ll~k~  256 (932)
T KOG2053|consen  249 SSRLLEKG  256 (932)
T ss_pred             HHHHHHhC
Confidence            99988876

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.71  E-value=0.01  Score=59.67  Aligned_cols=242  Identities=14%  Similarity=0.103  Sum_probs=146.0

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC--------CCCCccHHhHHHH
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG--------NGELVTTSSVTCL  175 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------~~~~~~~~~~~~l  175 (451)
                      +.|...|+.+.|..-.+.+.       +...|..|...|.+..+++-|.-.+-.|....        .. .++ .+-.-+
T Consensus       736 SfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~-e~eakv  806 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGE-EDEAKV  806 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCc-chhhHH
Confidence            44667788888888766665       55789999999999998888877776665421        00 011 111223


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       176 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      .-.....|.+++|..+|.+-+.         |..|-..|-..|.+++|.++-+.--+-     --..||......+-..+
T Consensus       807 AvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRi-----HLr~Tyy~yA~~Lear~  872 (1416)
T KOG3617|consen  807 AVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRI-----HLRNTYYNYAKYLEARR  872 (1416)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccce-----ehhhhHHHHHHHHHhhc
Confidence            3334567899999999988765         334445677789999999887643222     23356766666666677


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHhc--------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010          256 MQTGCRKAIRRRIWEANHLFRLMLFK--------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS  327 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  327 (451)
                      +..+|.+...+--..|.++++-+.+.        .-..|...|.-.-.-+-..|+++.|+.+|...++         |-+
T Consensus       873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs  943 (1416)
T KOG3617|consen  873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFS  943 (1416)
T ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhh
Confidence            44444443322222333343333221        0012333344333444456777777777766543         444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      +++..|-.|+.++|-++-++-       -|....-.|.+.|-..|++.+|..+|.+.
T Consensus       944 ~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  944 MVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             heeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            556666677777777766542       23445556667777777777777777654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.66  E-value=0.005  Score=54.54  Aligned_cols=232  Identities=16%  Similarity=0.097  Sum_probs=139.8

Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 013010          143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK  222 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  222 (451)
                      -..+++..+..++++....|     +..+.+.......+.|+++.|.+-|+...+.+---....||..+.. .+.|+++.
T Consensus       123 Yse~Dl~g~rsLveQlp~en-----~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyas  196 (459)
T KOG4340|consen  123 YSEGDLPGSRSLVEQLPSEN-----EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYAS  196 (459)
T ss_pred             cccccCcchHHHHHhccCCC-----ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHH
Confidence            35678888888888776544     4444555555567899999999999999886544567889887754 46788999


Q ss_pred             HHHHHHHhhhCCCCCCC-----------CHH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc-CCCCC
Q 013010          223 ARFLLEQMELPGFRCPP-----------DVY----TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPD  286 (451)
Q Consensus       223 a~~~~~~m~~~g~~~~p-----------~~~----~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~  286 (451)
                      |+++..+..++|++-.|           |+.    +...-+++....-+...+.+.-.++++.|.+.+..|.-+ .-..|
T Consensus       197 ALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elD  276 (459)
T KOG4340|consen  197 ALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELD  276 (459)
T ss_pred             HHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCC
Confidence            99999999988764222           211    111122222222222222222223777888887777532 23456


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH  366 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  366 (451)
                      .+|...+.-.-. .+++.+..+-+.-+...+- .-..||..++-.||+..-++.|-.++-+-......-.+...|+.| +
T Consensus       277 PvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL-d  353 (459)
T KOG4340|consen  277 PVTLHNQALMNM-DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL-D  353 (459)
T ss_pred             chhhhHHHHhcc-cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH-H
Confidence            777665543222 2445555555555555432 246788888889999988888888886643322212344444433 3


Q ss_pred             HHHH-cCCHHHHHHHHHH
Q 013010          367 ALCE-AGRVLEARDFLAE  383 (451)
Q Consensus       367 ~~~~-~g~~~~A~~l~~~  383 (451)
                      ++.- .-..++|.+-++.
T Consensus       354 aLIt~qT~pEea~KKL~~  371 (459)
T KOG4340|consen  354 ALITCQTAPEEAFKKLDG  371 (459)
T ss_pred             HHHhCCCCHHHHHHHHHH
Confidence            3333 3345555544443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.66  E-value=0.083  Score=53.04  Aligned_cols=299  Identities=15%  Similarity=0.057  Sum_probs=176.7

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh-cCC
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-EGL  184 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~-~g~  184 (451)
                      ..+.|.+..+-+.|+....  +.......|+.+...|...|.-..|..+++.-......| .+...+-..-..|.+ .+.
T Consensus       333 l~~~g~f~~lae~fE~~~~--~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~p-s~~s~~Lmasklc~e~l~~  409 (799)
T KOG4162|consen  333 LSRCGQFEVLAEQFEQALP--FSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQP-SDISVLLMASKLCIERLKL  409 (799)
T ss_pred             HHHHHHHHHHHHHHHHHhH--hhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCC-CcchHHHHHHHHHHhchhh
Confidence            4456778888888888763  455567789999999999999888998887765543222 223233333333433 466


Q ss_pred             HHHHHHHHHHHhh--CC--CCCCHHHHHHHHHHHHhcC-----------ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010          185 VNEALATFYRMKQ--FR--CRPDVYAYNVVINALCRVG-----------NFNKARFLLEQMELPGFRCPPDVYTYTILIS  249 (451)
Q Consensus       185 ~~~A~~~~~~m~~--~g--~~p~~~~~~~li~~~~~~g-----------~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~  249 (451)
                      +++++++-.+...  .+  -......|..+.-+|...-           ...++++.+++..+.+.. .|++.-|-++-.
T Consensus       410 ~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~  488 (799)
T KOG4162|consen  410 VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQY  488 (799)
T ss_pred             hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHH
Confidence            6666666555544  11  1223445555544444321           134566777776665532 355544444433


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh-CCC----------
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK-KGC----------  318 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~----------  318 (451)
                      +  ..+           +++.|.+...+..+.+-.-+...|..+.-.+...+++.+|+.+.+...+ .|.          
T Consensus       489 A--~~R-----------~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~  555 (799)
T KOG4162|consen  489 A--EQR-----------QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIH  555 (799)
T ss_pred             H--HHH-----------hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhh
Confidence            3  333           6677777777766654455666666666666666666666665554321 111          


Q ss_pred             --------------------------------------------------------------------------------
Q 013010          319 --------------------------------------------------------------------------------  318 (451)
Q Consensus       319 --------------------------------------------------------------------------------  318 (451)
                                                                                                      
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~  635 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPS  635 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCc
Confidence                                                                                            


Q ss_pred             ---CC--CH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          319 ---IP--NR------VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       319 ---~p--~~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                         .|  +.      ..|......+.+.++.++|.-.+.+..+..  ...+..|...-..+...|..++|.+.|..... 
T Consensus       636 s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~-  712 (799)
T KOG4162|consen  636 STVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA-  712 (799)
T ss_pred             ccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh-
Confidence               00  00      011223334455566666666666665544  34444555555566677888888888877665 


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCCCchHHH--HHHHHHHhchH
Q 013010          388 GSVPR-EYTYKLVCDALNAAEEPSLLDD--GLRKRIRDGIE  425 (451)
Q Consensus       388 g~~p~-~~t~~~li~~~~~~g~~~~a~~--~~~~~~~~g~~  425 (451)
                       +.|+ .....++...+.+.|+...+..  .+..+++.+..
T Consensus       713 -ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~  752 (799)
T KOG4162|consen  713 -LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL  752 (799)
T ss_pred             -cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence             4454 5577888999999999888877  78877765543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.65  E-value=0.013  Score=61.06  Aligned_cols=211  Identities=8%  Similarity=0.016  Sum_probs=103.5

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC----------------Cc
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNE-MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE----------------LV  167 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----------------~~  167 (451)
                      .+...+++++|.++.+...+.   .|+. ..|-.+...+.+.++.+.+..+  .+...-...                ..
T Consensus        40 ~~~~~~~~deai~i~~~~l~~---~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~  114 (906)
T PRK14720         40 AYKSENLTDEAKDICEEHLKE---HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGE  114 (906)
T ss_pred             HHHhcCCHHHHHHHHHHHHHh---CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhh
Confidence            366677789999998866643   4443 2333344466666665555444  222211000                00


Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      +...+..+..+|-+.|+.++|.++|+++.+.. +-|+.+.|.+...|... ++++|++++.+....              
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------  178 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------  178 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------
Confidence            11234444444555555555555555555544 23445555555555555 555555554443322              


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH
Q 013010          248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNRVTYN  326 (451)
Q Consensus       248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~t~~  326 (451)
                         |....           ++.++.++|.++....                 ..+.+.-..+.+.+... |..--..++-
T Consensus       179 ---~i~~k-----------q~~~~~e~W~k~~~~~-----------------~~d~d~f~~i~~ki~~~~~~~~~~~~~~  227 (906)
T PRK14720        179 ---FIKKK-----------QYVGIEEIWSKLVHYN-----------------SDDFDFFLRIERKVLGHREFTRLVGLLE  227 (906)
T ss_pred             ---HHhhh-----------cchHHHHHHHHHHhcC-----------------cccchHHHHHHHHHHhhhccchhHHHHH
Confidence               22222           3334444444443321                 11222222222222221 2222344555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010          327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC  369 (451)
Q Consensus       327 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~  369 (451)
                      .+-..|...++++++..+++.+.+..  .-|.....-++..|.
T Consensus       228 ~l~~~y~~~~~~~~~i~iLK~iL~~~--~~n~~a~~~l~~~y~  268 (906)
T PRK14720        228 DLYEPYKALEDWDEVIYILKKILEHD--NKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHhhhhhhhHHHHHHHHHHhcC--CcchhhHHHHHHHHH
Confidence            56666777777777777777777765  345556666666665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.63  E-value=0.0011  Score=54.14  Aligned_cols=120  Identities=13%  Similarity=0.083  Sum_probs=87.5

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFH-NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      .++..++...++.+...++-.+ .....-.+...+...|++++|...|+.+......+.......-.|...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            4567788888888886522211 122333355778889999999999999999763332233345567788889999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM  230 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  230 (451)
                      |+..++......  .....+......|.+.|+.++|...|+..
T Consensus       104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            999998755433  34566778889999999999999999763

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.58  E-value=0.088  Score=51.29  Aligned_cols=286  Identities=14%  Similarity=0.082  Sum_probs=155.4

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCC-------------------------
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN-------------------------  163 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------------------------  163 (451)
                      .+.+++|+..++.....     |..+...-...+-+.|++++|.++|+.+.+.+.                         
T Consensus        92 lnk~Dealk~~~~~~~~-----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~  166 (652)
T KOG2376|consen   92 LNKLDEALKTLKGLDRL-----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS  166 (652)
T ss_pred             cccHHHHHHHHhccccc-----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence            34467777766633211     233444455667778888888888888755421                         


Q ss_pred             CCCccHHhHHHHH---HHHHhcCCHHHHHHHHHHHhhCC-------------CCCCHHHHH-HHHHHHHhcCChHHHHHH
Q 013010          164 GELVTTSSVTCLI---KVLGEEGLVNEALATFYRMKQFR-------------CRPDVYAYN-VVINALCRVGNFNKARFL  226 (451)
Q Consensus       164 ~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g-------------~~p~~~~~~-~li~~~~~~g~~~~a~~~  226 (451)
                      .|.....+|..+-   ..+...|++..|+++++....-+             +.-...+.. -+..++-..|+-++|.++
T Consensus       167 v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i  246 (652)
T KOG2376|consen  167 VPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI  246 (652)
T ss_pred             ccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            1112233455444   34556899999999998882211             111112221 233455678999999999


Q ss_pred             HHHhhhCCCCCCCCHHH----HHHHHHHHHhcCCchhh----------------hHHHH---------------------
Q 013010          227 LEQMELPGFRCPPDVYT----YTILISSYCKYGMQTGC----------------RKAIR---------------------  265 (451)
Q Consensus       227 ~~~m~~~g~~~~p~~~~----~~~li~~~~~~g~~~~~----------------~~~~~---------------------  265 (451)
                      +....+...   +|...    -|.|+..-....-.++.                ...+.                     
T Consensus       247 y~~~i~~~~---~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~  323 (652)
T KOG2376|consen  247 YVDIIKRNP---ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM  323 (652)
T ss_pred             HHHHHHhcC---CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            988887652   34322    22222211111111100                00000                     


Q ss_pred             -------------------------------HHHHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHH-
Q 013010          266 -------------------------------RRIWEANHLFRLMLFKGFVPD--VVAYNCLIDGCCKTYRIERALELFD-  311 (451)
Q Consensus       266 -------------------------------~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~-  311 (451)
                                                     .....+.+++...-+.  .|.  ..+.-+.+......|+++.|.+++. 
T Consensus       324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~  401 (652)
T KOG2376|consen  324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSL  401 (652)
T ss_pred             HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence                                           0122222233222221  122  1223334445567788888888888 


Q ss_pred             -------HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChh----hHHHHHHHHHHcCCHHHHHH
Q 013010          312 -------DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSS----SYTPIIHALCEAGRVLEARD  379 (451)
Q Consensus       312 -------~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~----~~~~li~~~~~~g~~~~A~~  379 (451)
                             .+.+.+..|-.  ...+...|.+.++-+.|..++++....-.. .+...    ++.-+..--.+.|+.++|..
T Consensus       402 ~~~~~~ss~~~~~~~P~~--V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s  479 (652)
T KOG2376|consen  402 FLESWKSSILEAKHLPGT--VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS  479 (652)
T ss_pred             HhhhhhhhhhhhccChhH--HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence                   56666655544  444555566666666666666654432110 12222    23333333356799999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010          380 FLAELVDGGSVPREYTYKLVCDALNAAE  407 (451)
Q Consensus       380 l~~~m~~~g~~p~~~t~~~li~~~~~~g  407 (451)
                      +++++.+.. ++|..+...++.+|++..
T Consensus       480 ~leel~k~n-~~d~~~l~~lV~a~~~~d  506 (652)
T KOG2376|consen  480 LLEELVKFN-PNDTDLLVQLVTAYARLD  506 (652)
T ss_pred             HHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence            999998753 467888888999998765

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.11  Score=53.93  Aligned_cols=215  Identities=14%  Similarity=0.123  Sum_probs=111.7

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      |.......+.++...+-..+..++++++.-.+-....+...-|.||-...+. +..++.+..+++-..+. |++      
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~i------ 1054 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PDI------ 1054 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hhH------
Confidence            4555566677777777777888887777654422222333334444443332 33344444444443221 111      


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCC--------------------CCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGF--------------------RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWE  270 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~--------------------~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~  270 (451)
                      ...+...+-+++|..+|+.....+.                    +| -....|+.+..+-.+.|           .+.+
T Consensus      1055 a~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~-n~p~vWsqlakAQL~~~-----------~v~d 1122 (1666)
T KOG0985|consen 1055 AEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC-NEPAVWSQLAKAQLQGG-----------LVKD 1122 (1666)
T ss_pred             HHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh-CChHHHHHHHHHHHhcC-----------chHH
Confidence            1112223334444444433211000                    00 12235556666655555           5555


Q ss_pred             HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       271 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      |.+-|-+.      -|...|.-++....+.|.+++-.+.+...++....|...  +.||-+|++.+++.+..+++.    
T Consensus      1123 AieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~---- 1190 (1666)
T KOG0985|consen 1123 AIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA---- 1190 (1666)
T ss_pred             HHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc----
Confidence            55544222      256677788888888888888887777777766665543  467777888877776655541    


Q ss_pred             cCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010          351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFL  381 (451)
Q Consensus       351 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~  381 (451)
                          .||......+-+-|...|.++.|.-+|
T Consensus      1191 ----gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1191 ----GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred             ----CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence                244444444444444444444444333

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.03  Score=57.69  Aligned_cols=179  Identities=18%  Similarity=0.225  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT  191 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  191 (451)
                      .++|..+|+...      .+....+.|+.-   -++.+.|.++-++..        ...+|+.+..+-.+.|.+.+|.+-
T Consensus      1064 yEEAF~ifkkf~------~n~~A~~VLie~---i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~~~v~dAieS 1126 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD------MNVSAIQVLIEN---IGSLDRAYEFAERCN--------EPAVWSQLAKAQLQGGLVKDAIES 1126 (1666)
T ss_pred             HHHHHHHHHHhc------ccHHHHHHHHHH---hhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhcCchHHHHHH
Confidence            456666555432      133444444432   345555555544321        334688888888888888888877


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHH
Q 013010          192 FYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEA  271 (451)
Q Consensus       192 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a  271 (451)
                      |-+.      -|+..|.-++....+.|.+++..+++...++....  |.  .=+.||-+|++.+           ++.+.
T Consensus      1127 yika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E--~~--id~eLi~AyAkt~-----------rl~el 1185 (1666)
T KOG0985|consen 1127 YIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE--PY--IDSELIFAYAKTN-----------RLTEL 1185 (1666)
T ss_pred             HHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC--cc--chHHHHHHHHHhc-----------hHHHH
Confidence            6443      36778889999999999999998888777766532  43  4457888999888           55554


Q ss_pred             HHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          272 NHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       272 ~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                      +++.       .-||......+-+-|...|.++.|.-+|.         +...|..|...+...|++..|...
T Consensus      1186 E~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1186 EEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred             HHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4333       13555555666666666666666655554         233455555555555555555443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.082  Score=53.52  Aligned_cols=142  Identities=15%  Similarity=0.096  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT  191 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  191 (451)
                      +++|+.+|+...+          |..|=..|-..|.+++|.++-+.--+...     ..||..-..-+-..++.+.|++.
T Consensus       816 lEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL-----r~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  816 LEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHL-----RNTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceeh-----hhhHHHHHHHHHhhccHHHHHHH
Confidence            5666666666543          33344455567777777777654333322     23566656656667788888877


Q ss_pred             HHHHhh----------CC---------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----------CCC------
Q 013010          192 FYRMKQ----------FR---------CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP----------GFR------  236 (451)
Q Consensus       192 ~~~m~~----------~g---------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g~~------  236 (451)
                      |++.-.          ..         -..|...|.-....+-..|+.|.|+.+|...++.          |..      
T Consensus       881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~i  960 (1416)
T KOG3617|consen  881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARI  960 (1416)
T ss_pred             HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHH
Confidence            765421          11         0124444444444445578888888887765432          100      


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010          237 --CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       237 --~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~  279 (451)
                        -.-|..+...|.+.|-..|           ++.+|..+|.+..
T Consensus       961 A~esgd~AAcYhlaR~YEn~g-----------~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  961 AEESGDKAACYHLARMYENDG-----------DVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHhcccHHHHHHHHHHhhhhH-----------HHHHHHHHHHHHH
Confidence              0125556667777888777           7777777776553

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.51  E-value=0.0092  Score=59.19  Aligned_cols=138  Identities=15%  Similarity=0.131  Sum_probs=86.3

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010          138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV  217 (451)
Q Consensus       138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  217 (451)
                      .+.+....+.+.+|..+++.+......    +.-|..+..-|+..|+++.|.++|.+.         ..++-.|..|.++
T Consensus       738 aieaai~akew~kai~ildniqdqk~~----s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~  804 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKTA----SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKA  804 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhccc----cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhcc
Confidence            344455667788888888777766532    223666777788888888888887553         2345567778888


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHH
Q 013010          218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGC  297 (451)
Q Consensus       218 g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~  297 (451)
                      |+|+.|.++-.+.....    .....|-+-..-+-+.|           ++.+|+++|-...    .|+.     -|..|
T Consensus       805 ~kw~da~kla~e~~~~e----~t~~~yiakaedldehg-----------kf~eaeqlyiti~----~p~~-----aiqmy  860 (1636)
T KOG3616|consen  805 GKWEDAFKLAEECHGPE----ATISLYIAKAEDLDEHG-----------KFAEAEQLYITIG----EPDK-----AIQMY  860 (1636)
T ss_pred             ccHHHHHHHHHHhcCch----hHHHHHHHhHHhHHhhc-----------chhhhhheeEEcc----CchH-----HHHHH
Confidence            88888888766554221    34455555555566666           6666666664332    2332     34556


Q ss_pred             HhcCCHHHHHHHHHH
Q 013010          298 CKTYRIERALELFDD  312 (451)
Q Consensus       298 ~~~g~~~~a~~~~~~  312 (451)
                      -+.|..++..++...
T Consensus       861 dk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  861 DKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HhhCcchHHHHHHHH
Confidence            666666666665554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.50  E-value=0.008  Score=59.57  Aligned_cols=168  Identities=15%  Similarity=0.105  Sum_probs=98.4

Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY  290 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  290 (451)
                      +.+..++..|.+|+.+++.+..+..    -..-|..+.+.|+..|           +++.|+++|.+.-         .+
T Consensus       739 ieaai~akew~kai~ildniqdqk~----~s~yy~~iadhyan~~-----------dfe~ae~lf~e~~---------~~  794 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT----ASGYYGEIADHYANKG-----------DFEIAEELFTEAD---------LF  794 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc----ccccchHHHHHhccch-----------hHHHHHHHHHhcc---------hh
Confidence            3444556777788888887776652    2334666777888888           7888888875432         34


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE  370 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~  370 (451)
                      +--|..|.+.|+|+.|.++-.+...  -......|-.-..-+-+.|++.+|.+++-.+   |  .|+     ..|..|-+
T Consensus       795 ~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti---~--~p~-----~aiqmydk  862 (1636)
T KOG3616|consen  795 KDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI---G--EPD-----KAIQMYDK  862 (1636)
T ss_pred             HHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc---c--Cch-----HHHHHHHh
Confidence            5567788888888888887666542  2334555555555556667766666665332   1  343     23455666


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHH
Q 013010          371 AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLR  417 (451)
Q Consensus       371 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~  417 (451)
                      .|..+..+++..+-.-.   .-..|-..+..-|...|++..|++.+-
T Consensus       863 ~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~fl  906 (1636)
T KOG3616|consen  863 HGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFL  906 (1636)
T ss_pred             hCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence            66666665554432110   012244445555566666655544443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.48  E-value=0.0028  Score=46.42  Aligned_cols=94  Identities=18%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 013010          290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALC  369 (451)
Q Consensus       290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~  369 (451)
                      +..+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++......  ..+..++..+...+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~   79 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--PDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CcchhHHHHHHHHHH
Confidence            4455666777888888888888876652 2234666777777788888888888888877654  344457777777788


Q ss_pred             HcCCHHHHHHHHHHHHh
Q 013010          370 EAGRVLEARDFLAELVD  386 (451)
Q Consensus       370 ~~g~~~~A~~l~~~m~~  386 (451)
                      ..|++++|...+....+
T Consensus        80 ~~~~~~~a~~~~~~~~~   96 (100)
T cd00189          80 KLGKYEEALEAYEKALE   96 (100)
T ss_pred             HHHhHHHHHHHHHHHHc
Confidence            88888888888777654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.46  E-value=0.0072  Score=50.92  Aligned_cols=118  Identities=12%  Similarity=0.079  Sum_probs=83.1

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      ....+..+...+...|++++|...|++..+....+......+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            345677788888999999999999999987654332234678889999999999999999999998853 2246666777


Q ss_pred             HHHHHhcCC--------------hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          211 INALCRVGN--------------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       211 i~~~~~~g~--------------~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      ..++...|+              +++|.+++++....+    |+.  |..++..+...|
T Consensus       113 g~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~----p~~--~~~~~~~~~~~~  165 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA----PNN--YIEAQNWLKTTG  165 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC----chh--HHHHHHHHHhcC
Confidence            777777776              345555555555433    332  445555554444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.46  E-value=0.0042  Score=56.85  Aligned_cols=131  Identities=20%  Similarity=0.297  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC
Q 013010          205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV  284 (451)
Q Consensus       205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~  284 (451)
                      .+|-.+|+..-+.+.++.|.++|.+.++.+. +..++....+++..++. +           +.+.|.++|+...+. +.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~-~-----------d~~~A~~Ife~glk~-f~   67 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCN-K-----------DPKRARKIFERGLKK-FP   67 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTC-S------------HHHHHHHHHHHHHH-HT
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhC-C-----------CHHHHHHHHHHHHHH-CC
Confidence            3555666666666666666666666664432 12333333333332221 2           444566666665543 34


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010          285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR----VTYNSFIRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                      .+...|...+..+.+.++.+.|..+|+.....  .|..    ..|...+..=.+.|+++.+..+.+++.+.
T Consensus        68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   68 SDPDFWLEYLDFLIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45555666666666666666666666665544  2222    36666666666666666666666666654

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=0.12  Score=49.73  Aligned_cols=89  Identities=9%  Similarity=-0.049  Sum_probs=55.9

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      ++.-..++++.|+..|-.....  -++|...|..=..+|+..|++++|.+=-.+-.+...   .-...|+-.-.++.-.|
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p---~w~kgy~r~Gaa~~~lg   84 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP---DWAKGYSRKGAALFGLG   84 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC---chhhHHHHhHHHHHhcc
Confidence            3344566777777777776632  234556666677777777777777665555444431   13445666666666677


Q ss_pred             CHHHHHHHHHHHhh
Q 013010          184 LVNEALATFYRMKQ  197 (451)
Q Consensus       184 ~~~~A~~~~~~m~~  197 (451)
                      ++++|..-|.+-.+
T Consensus        85 ~~~eA~~ay~~GL~   98 (539)
T KOG0548|consen   85 DYEEAILAYSEGLE   98 (539)
T ss_pred             cHHHHHHHHHHHhh
Confidence            77777777766555

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.42  E-value=0.003  Score=46.27  Aligned_cols=95  Identities=13%  Similarity=0.134  Sum_probs=73.3

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL  214 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  214 (451)
                      +..+...+...|++++|...++...+....   +...+..+...+...+++++|.+.|+...+.. +.+..++..+...+
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~   78 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHH
Confidence            455667777889999999999888776422   33567778888888899999999998887754 33446778888888


Q ss_pred             HhcCChHHHHHHHHHhhhC
Q 013010          215 CRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       215 ~~~g~~~~a~~~~~~m~~~  233 (451)
                      ...|+++.|...+......
T Consensus        79 ~~~~~~~~a~~~~~~~~~~   97 (100)
T cd00189          79 YKLGKYEEALEAYEKALEL   97 (100)
T ss_pred             HHHHhHHHHHHHHHHHHcc
Confidence            8889999999888887654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.36  E-value=0.08  Score=47.27  Aligned_cols=58  Identities=12%  Similarity=0.086  Sum_probs=30.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHH---HHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010          175 LIKVLGEEGLVNEALATFYRMKQFRCRPDV-YAY---NVVINALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      ....+...|++++|.+.|+++...-  |+. ...   -.+..++.+.+++++|...+++..+.-
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            3334445566666666666665532  221 221   233455566666666666666665543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.35  E-value=0.028  Score=54.01  Aligned_cols=150  Identities=7%  Similarity=0.069  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       268 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      .+.....+++....-..--+-+|...|+.-.+..-+..|..+|.++.+.+..+ +...++++|..|| .++..-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            44455555555543222234678888888888888999999999999998888 7888899999887 577889999998


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR--EYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      -=.+..  .-++.--...++-+...++-..|..+|++.+..++.|+  ...|..+|+-=..-|++..+.++-+++.
T Consensus       426 LGLkkf--~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~  499 (656)
T KOG1914|consen  426 LGLKKF--GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF  499 (656)
T ss_pred             HHHHhc--CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            755543  12333445677788888999999999999998877766  4789999999999999997777666655

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.32  E-value=0.011  Score=46.08  Aligned_cols=100  Identities=12%  Similarity=-0.021  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          171 SVTCLIKVLGEEGLVNEALATFYRMKQFRC--RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      ++..+...+.+.|++++|.+.|+.+.+..-  ......+..+..++.+.|+++.|.+.|+.+....-..+....++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            467778888999999999999999987431  112456777889999999999999999998875411112356788888


Q ss_pred             HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      .++.+.|           +.++|...++++.+.
T Consensus        84 ~~~~~~~-----------~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELG-----------DKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhC-----------ChHHHHHHHHHHHHH
Confidence            8899998           889999999998876

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.30  E-value=0.14  Score=49.41  Aligned_cols=175  Identities=13%  Similarity=0.116  Sum_probs=118.8

Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI  264 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~  264 (451)
                      .+.....++++...-..--..+|...|+..-+..-++.|..+|.+.++.+.. +-++.++++++.-||..          
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~-~hhVfVa~A~mEy~csk----------  415 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRT-RHHVFVAAALMEYYCSK----------  415 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCC-cchhhHHHHHHHHHhcC----------
Confidence            5556667776665432223466777788778888888888888888888764 23778888888888765          


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 013010          265 RRRIWEANHLFRLMLFKGFVPDV-VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A  341 (451)
                        +..-|.++|+-=.+.  -+|. .--...++-+...++-..+..+|+.....++.||  ...|..+|..=++-|++..+
T Consensus       416 --D~~~AfrIFeLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si  491 (656)
T KOG1914|consen  416 --DKETAFRIFELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI  491 (656)
T ss_pred             --ChhHHHHHHHHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence              566788888754332  1233 3335667777778888888888888887766664  47788888888888888888


Q ss_pred             HHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCCH
Q 013010          342 IEMMRKMQNLNH--GVPTSSSYTPIIHALCEAGRV  374 (451)
Q Consensus       342 ~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~  374 (451)
                      .++-+++.....  ..+....-..+++-|.-.+..
T Consensus       492 ~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~  526 (656)
T KOG1914|consen  492 LKLEKRRFTAFPADQEYEGNETALFVDRYGILDLY  526 (656)
T ss_pred             HHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccc
Confidence            888877765432  123333444555556555543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.13  Score=49.64  Aligned_cols=220  Identities=14%  Similarity=0.075  Sum_probs=145.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      ...+.++.-+..++..|++-+....+..  -++.-++..-.+|...|.+..+...-+...+.|..   ...-|+.+-.++
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre---~rad~klIak~~  301 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE---LRADYKLIAKAL  301 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH---HHHHHHHHHHHH
Confidence            4456677777788888999888888754  45556677777888889888888877777776643   445566555555


Q ss_pred             HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh-------------------------HHHHHHHHHhcCCHHHH
Q 013010          252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA-------------------------YNCLIDGCCKTYRIERA  306 (451)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------------------------~~~li~~~~~~g~~~~a  306 (451)
                      .+.|.--.-+    ++++.+...|.+....-..||..+                         .-.--+.+.+.|++..|
T Consensus       302 ~r~g~a~~k~----~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~A  377 (539)
T KOG0548|consen  302 ARLGNAYTKR----EDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEA  377 (539)
T ss_pred             HHhhhhhhhH----HhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHH
Confidence            5533211111    244444444444332222221111                         11124556788999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       307 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ...|.++.+.. +-|...|..-..+|.+.|.+..|+.-.+...+..  ++....|..=..++....++++|.+.|.+-.+
T Consensus       378 v~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~--p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  378 VKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD--PNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999885 3378999999999999999999999888887765  44555555545555556688899999888877


Q ss_pred             CCCCCCHHHHHHHHHHHHh
Q 013010          387 GGSVPREYTYKLVCDALNA  405 (451)
Q Consensus       387 ~g~~p~~~t~~~li~~~~~  405 (451)
                      ..  |+..-+..-+.-|..
T Consensus       455 ~d--p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  455 LD--PSNAEAIDGYRRCVE  471 (539)
T ss_pred             cC--chhHHHHHHHHHHHH
Confidence            54  665555444444444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.23  E-value=0.02  Score=48.04  Aligned_cols=105  Identities=14%  Similarity=0.016  Sum_probs=58.1

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI  246 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~  246 (451)
                      ...|..+...+...|++++|+..|++.......+  ...+|..+...+...|++++|...++......   +....++..
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~---~~~~~~~~~  111 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN---PFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---cCcHHHHHH
Confidence            3445555666666677777777776665432111  12456666666777777777777777666542   233444555


Q ss_pred             HHHHHH-------hcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010          247 LISSYC-------KYGMQTGCRKAIRRRIWEANHLFRLMLF  280 (451)
Q Consensus       247 li~~~~-------~~g~~~~~~~~~~~~~~~a~~~~~~m~~  280 (451)
                      +...+.       ..|+...+..    .+++|..+++....
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~----~~~~a~~~~~~a~~  148 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEA----WFDQAAEYWKQAIA  148 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHH----HHHHHHHHHHHHHH
Confidence            555555       4553332222    44455555555543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.17  E-value=0.015  Score=53.20  Aligned_cols=147  Identities=13%  Similarity=0.140  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010          242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP  320 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  320 (451)
                      .+|..+++..-+.+           ..+.|..+|.+..+.+ +..++....+++. |...++.+.|..+|+...+. +.-
T Consensus         2 ~v~i~~m~~~~r~~-----------g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~-f~~   68 (280)
T PF05843_consen    2 LVWIQYMRFMRRTE-----------GIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK-FPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHH-----------HHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH-HTT
T ss_pred             HHHHHHHHHHHHhC-----------ChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH-CCC
Confidence            57888888888888           8999999999998543 3344444444443 33356777899999998765 445


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV  399 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l  399 (451)
                      +...|...+..+...|+.+.|..+|++....-.... ....|...+.-=.+.|+.+.+.++.+++.+.  .|+...+..+
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f  146 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELF  146 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHH
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHH
Confidence            778889999999999999999999999887521111 2248888888888899999999999988863  4454555555


Q ss_pred             HHHH
Q 013010          400 CDAL  403 (451)
Q Consensus       400 i~~~  403 (451)
                      ++-|
T Consensus       147 ~~ry  150 (280)
T PF05843_consen  147 SDRY  150 (280)
T ss_dssp             HCCT
T ss_pred             HHHh
Confidence            5544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.16  E-value=0.012  Score=49.40  Aligned_cols=96  Identities=13%  Similarity=0.000  Sum_probs=70.6

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      ...|..+...+...|++++|...|+......-.|  ...++..+-..|...|+.++|+..++......  +....++..+
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~--~~~~~~~~~l  112 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN--PFLPQALNNM  112 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHH
Confidence            4556677777778899999999999887653222  23578888888999999999999999988754  3445556666


Q ss_pred             HHHHH-------HcCCHHHHHHHHHHH
Q 013010          365 IHALC-------EAGRVLEARDFLAEL  384 (451)
Q Consensus       365 i~~~~-------~~g~~~~A~~l~~~m  384 (451)
                      ...+.       ..|++++|...+++-
T Consensus       113 a~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        113 AVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            66666       777877666666544

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.14  E-value=0.014  Score=55.34  Aligned_cols=90  Identities=12%  Similarity=0.039  Sum_probs=59.9

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010          295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV  374 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~  374 (451)
                      ..+...|++++|.+.|++..+.. +-+...|..+..+|...|++++|+..+++.....  +.+...|..+..+|...|++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~--P~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD--PSLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhCCH
Confidence            34456677777777777776652 1245666666667777777777777777777654  34556666666777777777


Q ss_pred             HHHHHHHHHHHhC
Q 013010          375 LEARDFLAELVDG  387 (451)
Q Consensus       375 ~~A~~l~~~m~~~  387 (451)
                      ++|...|++.++.
T Consensus        87 ~eA~~~~~~al~l   99 (356)
T PLN03088         87 QTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777776653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.13  E-value=0.2  Score=45.70  Aligned_cols=285  Identities=13%  Similarity=0.004  Sum_probs=183.9

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHH---HHHHHhcCCH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL---IKVLGEEGLV  185 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l---i~~~~~~g~~  185 (451)
                      .+.+..|+.-|+...+.  -+.+-.++-.-...|...|+-..|..=+..+.+..  |  +-  +.+-   -..+.+.|.+
T Consensus        51 ~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--p--DF--~~ARiQRg~vllK~Gel  122 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--P--DF--MAARIQRGVVLLKQGEL  122 (504)
T ss_pred             hhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--c--cH--HHHHHHhchhhhhcccH
Confidence            45577888888887642  22222233333456777888888888888877763  2  21  2222   2346789999


Q ss_pred             HHHHHHHHHHhhCCCC------------CCHHHH--HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          186 NEALATFYRMKQFRCR------------PDVYAY--NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~------------p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      +.|..=|+...+..-.            +....|  ...+..+...|+...|+.....+.+-.   +-|...|..-..+|
T Consensus       123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---PWDASLRQARAKCY  199 (504)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---cchhHHHHHHHHHH
Confidence            9999999999885311            111122  233455666889999999999988764   46888888889999


Q ss_pred             HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HH---HH
Q 013010          252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV-TY---NS  327 (451)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~---~~  327 (451)
                      ...|           ....|..=++...+.. .-++.++--+-..+.+.|+.+.++...++..+.  .||.. +|   ..
T Consensus       200 i~~~-----------e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKk  265 (504)
T KOG0624|consen  200 IAEG-----------EPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKK  265 (504)
T ss_pred             HhcC-----------cHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHH
Confidence            9999           5555554444443322 224555555667788899999999999998876  45532 22   11


Q ss_pred             -------H--HHHHHhcCCHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHH
Q 013010          328 -------F--IRYYSVVNEIDKAIEMMRKMQNLNHGVP--TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYT  395 (451)
Q Consensus       328 -------l--i~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t  395 (451)
                             |  +......++|.++++-.+...+.....+  ....+..+-.++...|++.+|++...+.++  +.|+ ..+
T Consensus       266 lkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~  343 (504)
T KOG0624|consen  266 LKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQV  343 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHH
Confidence                   1  1223456778888888887776543111  123455666677778999999999988876  4565 566


Q ss_pred             HHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          396 YKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       396 ~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +---..+|.-..+++.|..-+++..
T Consensus       344 l~dRAeA~l~dE~YD~AI~dye~A~  368 (504)
T KOG0624|consen  344 LCDRAEAYLGDEMYDDAIHDYEKAL  368 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            6666666666666666555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.11  E-value=0.016  Score=54.98  Aligned_cols=91  Identities=12%  Similarity=-0.021  Sum_probs=61.5

Q ss_pred             HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC
Q 013010          140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN  219 (451)
Q Consensus       140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  219 (451)
                      ..+...|++++|.+.|++..+....   +...|..+..+|...|++++|+..+++..+.. +.+...|..+..+|...|+
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~---~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPN---NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            3445567777777777777766422   45566677777777777777777777776643 2245666667777777777


Q ss_pred             hHHHHHHHHHhhhCC
Q 013010          220 FNKARFLLEQMELPG  234 (451)
Q Consensus       220 ~~~a~~~~~~m~~~g  234 (451)
                      +++|...|++.....
T Consensus        86 ~~eA~~~~~~al~l~  100 (356)
T PLN03088         86 YQTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            777777777776654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.11  E-value=0.0013  Score=47.97  Aligned_cols=79  Identities=19%  Similarity=0.253  Sum_probs=34.0

Q ss_pred             CCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH
Q 013010          301 YRIERALELFDDMNKKGC-IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD  379 (451)
Q Consensus       301 g~~~~a~~~~~~m~~~g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  379 (451)
                      |+++.|..+++.+.+..- .|+...+-.+..+|.+.|++++|..+++. .+.+  ..+....-.+..+|.+.|++++|.+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            455555555555554421 11222333345555555555555555555 2111  1111222233444555555555555


Q ss_pred             HHH
Q 013010          380 FLA  382 (451)
Q Consensus       380 l~~  382 (451)
                      .++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            554

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.17  Score=44.21  Aligned_cols=185  Identities=13%  Similarity=0.039  Sum_probs=107.1

Q ss_pred             HHHHHHHHHHHhhc--CC-CCCCHH-hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          112 LNKATEFYHWVERF--FD-FFHNEM-TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       112 ~~~A~~~f~~~~~~--~~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      .++.++++..+...  .| ..++.. .|..++-+....|+.+.|...++.+..+-.+. +-..-...  -.+-..|++++
T Consensus        28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S-~RV~~lka--m~lEa~~~~~~  104 (289)
T KOG3060|consen   28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGS-KRVGKLKA--MLLEATGNYKE  104 (289)
T ss_pred             HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCC-hhHHHHHH--HHHHHhhchhh
Confidence            56666666665542  12 334443 35556666667777777777777777664221 11111111  11334577777


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR  267 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~  267 (451)
                      |+++|+.+.+.+ +-|.++|--=+...-..|+--+|++-+.+..+.-   ..|...|.-+...|...|           +
T Consensus       105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---~~D~EAW~eLaeiY~~~~-----------~  169 (289)
T KOG3060|consen  105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---MNDQEAWHELAEIYLSEG-----------D  169 (289)
T ss_pred             HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHhHh-----------H
Confidence            788777777755 4456666655555555666666766666666553   257777777777777777           7


Q ss_pred             HHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 013010          268 IWEANHLFRLMLFKGFVPD-VVAYNCLIDGCCKTY---RIERALELFDDMNKK  316 (451)
Q Consensus       268 ~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~  316 (451)
                      +++|.-.++++.-.  .|. ..-+..+...+...|   +.+-+.+.|....+.
T Consensus       170 f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  170 FEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            77777777777643  333 333334444443333   345566666666554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.09  E-value=0.11  Score=47.73  Aligned_cols=65  Identities=14%  Similarity=0.088  Sum_probs=38.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCI-----PNRV-TYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-----p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      ..+..+...+.+.|++++|.++|++....-..     ++.. .|-..+-.+...|+...|.+.+++.....
T Consensus       156 ~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~  226 (282)
T PF14938_consen  156 ECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD  226 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            44556667778888888888888877654221     1221 22233335555677778888887776543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.04  E-value=0.05  Score=45.76  Aligned_cols=85  Identities=21%  Similarity=0.149  Sum_probs=66.2

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      ...+..+...+...|++++|...|++..+.+-.+.  ...+..+...|.+.|++++|...+.+..+..  +-+...+..+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l  112 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN--PKQPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHH
Confidence            44577777788899999999999999886543332  4678888889999999999999999988864  3456667777


Q ss_pred             HHHHHHcCC
Q 013010          365 IHALCEAGR  373 (451)
Q Consensus       365 i~~~~~~g~  373 (451)
                      ...+...|+
T Consensus       113 g~~~~~~g~  121 (172)
T PRK02603        113 AVIYHKRGE  121 (172)
T ss_pred             HHHHHHcCC
Confidence            777777766

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.03  E-value=0.0018  Score=47.25  Aligned_cols=48  Identities=10%  Similarity=0.128  Sum_probs=19.5

Q ss_pred             CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 013010          146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYR  194 (451)
Q Consensus       146 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  194 (451)
                      |+++.|..+++++.+.... .++...+-.+..+|.+.|++++|..+++.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~-~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPT-NPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCG-THHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4444444444444444311 00222222344444445555555555444

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.02  E-value=0.29  Score=45.54  Aligned_cols=113  Identities=12%  Similarity=0.118  Sum_probs=87.5

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH  366 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  366 (451)
                      ..+.+..|.-+...|+...|.++-.+..    .|+..-|-.-+.+|+..++|++-..+...    .   -++.-|..++.
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k---KsPIGyepFv~  245 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K---KSPIGYEPFVE  245 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C---CCCCChHHHHH
Confidence            4466677788888999988888877663    47999999999999999999988876432    1   23589999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       367 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      +|.+.|...+|..++..     +.     +..-+..|.++|++..|.+.-.+..
T Consensus       246 ~~~~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~k  289 (319)
T PF04840_consen  246 ACLKYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEK  289 (319)
T ss_pred             HHHHCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcC
Confidence            99999999999998877     22     2445778888888887766655444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.98  E-value=0.12  Score=51.56  Aligned_cols=146  Identities=13%  Similarity=0.037  Sum_probs=98.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHH
Q 013010          199 RCRPDVYAYNVVINALCRVG-----NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANH  273 (451)
Q Consensus       199 g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~  273 (451)
                      +.+.|...|...+.+.....     +.+.|..+|++..+..   |-....|..+..+|..........   ..++..+.+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld---P~~a~a~A~la~~~~~~~~~~~~~---~~~l~~a~~  405 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE---PDFTYAQAEKALADIVRHSQQPLD---EKQLAALST  405 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHHHhcCCcc---HHHHHHHHH
Confidence            34568899999988865432     3678999999999876   224455555555443332221100   013445555


Q ss_pred             HHHHHHhc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          274 LFRLMLFK-GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       274 ~~~~m~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      ........ ....+...|.++.-.....|++++|...+++..+.+  |+...|..+-..|...|+.++|.+.+++.....
T Consensus       406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~  483 (517)
T PRK10153        406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR  483 (517)
T ss_pred             HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            55443332 233455677777666667799999999999988874  688888888889999999999999998887765

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.94  E-value=0.031  Score=44.04  Aligned_cols=104  Identities=11%  Similarity=0.034  Sum_probs=67.9

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII  365 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  365 (451)
                      |..++.++|.++++.|+++....+++..-  |+.++...         ..+.          ........|+..+..+++
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~----------~~~~spl~Pt~~lL~AIv   59 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD----------YPPSSPLYPTSRLLIAIV   59 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc----------cCCCCCCCCCHHHHHHHH
Confidence            34566666667777777666666665432  22221100         0000          112222368899999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCCc
Q 013010          366 HALCEAGRVLEARDFLAELVD-GGSVPREYTYKLVCDALNAAEEPS  410 (451)
Q Consensus       366 ~~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~  410 (451)
                      .+|+..|++..|+++++...+ -+++.+..+|..|++-+...-+..
T Consensus        60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~~~  105 (126)
T PF12921_consen   60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSSKR  105 (126)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCc
Confidence            999999999999999988874 478888889998888776666543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.83  E-value=0.053  Score=42.28  Aligned_cols=58  Identities=14%  Similarity=0.044  Sum_probs=29.6

Q ss_pred             HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010          140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  197 (451)
                      .++-..|+.++|..+|++....|.....-...+-.+-..+...|++++|..++++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444455555555555555555443322233444444555555555555555555544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.81  E-value=0.006  Score=42.21  Aligned_cols=51  Identities=20%  Similarity=0.229  Sum_probs=23.8

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      .|++++|+++|+.+.+.. +-+...+..+..+|.+.|++++|..+++.+...
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            445555555555554432 113444444555555555555555555555444

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.79  E-value=0.34  Score=43.23  Aligned_cols=175  Identities=13%  Similarity=0.087  Sum_probs=106.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHH---HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010          210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY---TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD  286 (451)
Q Consensus       210 li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~---~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~  286 (451)
                      ....+...|++++|.+.|+++...--   -+..+.   -.+..+|.+.+           ++++|...+++..+.--.-.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~-----------~y~~A~~~~e~fi~~~P~~~  103 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNA-----------DLPLAQAAIDRFIRLNPTHP  103 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCcCCC
Confidence            34456678999999999999987642   222332   35667788888           89999999999887522212


Q ss_pred             HhhHHHHHHHHHh--cC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          287 VVAYNCLIDGCCK--TY---------------R---IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       287 ~~~~~~li~~~~~--~g---------------~---~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      ..-|...+.+.+.  .+               +   ..+|.+.|++               +|.-|=...-..+|...+.
T Consensus       104 ~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~---------------li~~yP~S~ya~~A~~rl~  168 (243)
T PRK10866        104 NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK---------------LVRGYPNSQYTTDATKRLV  168 (243)
T ss_pred             chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH---------------HHHHCcCChhHHHHHHHHH
Confidence            2344444444442  11               1   1233334444               4444444444555555444


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 013010          347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG--GSVPREYTYKLVCDALNAAEEPSLLDDGLRK  418 (451)
Q Consensus       347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~  418 (451)
                      .+...-     ...--.+.+-|.+.|.+..|..-++.+++.  +.+........++.+|...|..+.+.+....
T Consensus       169 ~l~~~l-----a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        169 FLKDRL-----AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHH-----HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            443321     111124455678888888888888888864  4445566777888888888888887766553

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.73  E-value=0.091  Score=40.97  Aligned_cols=104  Identities=17%  Similarity=0.133  Sum_probs=71.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHH
Q 013010          294 IDGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----SSSYTPIIHA  367 (451)
Q Consensus       294 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~  367 (451)
                      -.++-..|+.++|..+|++....|....  ...+-.+-.+|...|++++|..++++.....   |+    ......+..+
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHH
Confidence            3456678899999999999888876654  3456667778888899999999998887653   33    1222223346


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010          368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALN  404 (451)
Q Consensus       368 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~  404 (451)
                      +...|+.++|.+.+-....    ++...|..-|..|.
T Consensus        85 L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA  117 (120)
T ss_pred             HHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            7788999999888766543    23336666665554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.73  E-value=0.19  Score=43.61  Aligned_cols=58  Identities=12%  Similarity=0.125  Sum_probs=31.1

Q ss_pred             HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010          140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  197 (451)
                      ..+...|++++|.+.|+.+.......+......-.++.++.+.|+++.|...+++..+
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344466666666666666665433333444445555666666666666666666554

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.71  E-value=0.0075  Score=41.71  Aligned_cols=64  Identities=16%  Similarity=0.222  Sum_probs=46.0

Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      .+.|++++|.++|+.+......   +...+..+..+|.+.|++++|.++++.+...  .|+...|..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~---~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD---NPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT---SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHHH
Confidence            3568888888888888877532   5666777888888888888888888888774  46655555443

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.69  E-value=0.041  Score=44.71  Aligned_cols=99  Identities=11%  Similarity=-0.063  Sum_probs=81.4

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ....-.+...+...|++++|.++|+-+......   +..-|-.|--++-..|++++|+..|........ -|...+-.+-
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~---~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag  110 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW---SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA  110 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence            344555777788899999999999999887633   555677888888889999999999999988663 4678888888


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCC
Q 013010          212 NALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      .++...|+.+.|.+-|+......
T Consensus       111 ~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        111 ECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHh
Confidence            89999999999999999877654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.68  E-value=0.094  Score=51.60  Aligned_cols=259  Identities=14%  Similarity=0.099  Sum_probs=126.2

Q ss_pred             CCHHhHHHHHHHHHccCChhHHHHH---------HHHHHHcCCCCCccHHhHHHHHHHHHhcCCH--HHHHHHHHHHhhC
Q 013010          130 HNEMTCKEMGIVFARGNNVKGLWDF---------LKDMSRRGNGELVTTSSVTCLIKVLGEEGLV--NEALATFYRMKQF  198 (451)
Q Consensus       130 ~~~~~~~~ll~~~~~~g~~~~a~~~---------~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~  198 (451)
                      +....+.+-+.-|...|.+++|.++         ++.+....    .++-.++.--++|.+..+.  -+-..-+++++++
T Consensus       554 ~~evp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~A----LeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~r  629 (1081)
T KOG1538|consen  554 AVEVPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEA----LEALDFETARKAYIRVRDLRYLELISELEERKKR  629 (1081)
T ss_pred             cccccccccchhhhhccchhhhhcccccceecchHHHHHHHH----HhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhc
Confidence            3344455555556667777777554         12221111    1222345555666655443  2344445677777


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH-----HHHHHHhcCCchhhhHHHHHHHHHHHH
Q 013010          199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI-----LISSYCKYGMQTGCRKAIRRRIWEANH  273 (451)
Q Consensus       199 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~-----li~~~~~~g~~~~~~~~~~~~~~~a~~  273 (451)
                      |-.|+.....   ..|+-.|++.+|.++|.+--...    .-...|+-     ...-|...|....-...++++-+-|..
T Consensus       630 ge~P~~iLlA---~~~Ay~gKF~EAAklFk~~G~en----RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~  702 (1081)
T KOG1538|consen  630 GETPNDLLLA---DVFAYQGKFHEAAKLFKRSGHEN----RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN  702 (1081)
T ss_pred             CCCchHHHHH---HHHHhhhhHHHHHHHHHHcCchh----hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence            7777765433   34566778888888876532211    11122221     233444445333322222222222211


Q ss_pred             HHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH------HHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          274 LFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD------MNKKGC---IPNRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       274 ~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~------m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                               ++-...    -...+..+|+.++|..+..+      +.+-+.   ..+..+...+...+.+...+..|-++
T Consensus       703 ---------~kePka----AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeI  769 (1081)
T KOG1538|consen  703 ---------IKEPKA----AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEI  769 (1081)
T ss_pred             ---------cCCcHH----HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHH
Confidence                     111111    11222234444444433211      111111   12345555555555666677777777


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHhcCCCchHH
Q 013010          345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY-----------TYKLVCDALNAAEEPSLLD  413 (451)
Q Consensus       345 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~li~~~~~~g~~~~a~  413 (451)
                      |..|-..          ..+++.....+++++|..+-+...+  +.|+.+           -|.---+||.++|+..+|.
T Consensus       770 F~k~gD~----------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~  837 (1081)
T KOG1538|consen  770 FLKMGDL----------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAV  837 (1081)
T ss_pred             HHHhccH----------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHH
Confidence            7776432          2355566677777777777665443  223321           2333456777777777777


Q ss_pred             HHHHHHHHhch
Q 013010          414 DGLRKRIRDGI  424 (451)
Q Consensus       414 ~~~~~~~~~g~  424 (451)
                      +++++.....+
T Consensus       838 ~vLeQLtnnav  848 (1081)
T KOG1538|consen  838 QVLEQLTNNAV  848 (1081)
T ss_pred             HHHHHhhhhhh
Confidence            77777764433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.68  E-value=0.14  Score=41.67  Aligned_cols=96  Identities=7%  Similarity=-0.051  Sum_probs=77.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010          170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS  249 (451)
Q Consensus       170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~  249 (451)
                      ...-.+-..+...|++++|..+|+-+...+. -+..-|-.|--+|-..|++++|...|........   -|...+-.+-.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~---ddp~~~~~ag~  111 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI---DAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC---CCchHHHHHHH
Confidence            3445566667789999999999999988542 2556666777777788999999999999988874   47888999999


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLF  280 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~  280 (451)
                      ++...|           +.+.|.+.|+....
T Consensus       112 c~L~lG-----------~~~~A~~aF~~Ai~  131 (157)
T PRK15363        112 CYLACD-----------NVCYAIKALKAVVR  131 (157)
T ss_pred             HHHHcC-----------CHHHHHHHHHHHHH
Confidence            999999           88888888886664

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.62  E-value=0.055  Score=48.77  Aligned_cols=103  Identities=10%  Similarity=-0.028  Sum_probs=80.4

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNV  209 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~  209 (451)
                      ...|...+..+.+.|++++|...|+.+.+...........+-.+...|...|++++|...|+.+.+.-  -+.....+-.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34577666666778999999999999999865443335678888999999999999999999998632  1123455555


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhCC
Q 013010          210 VINALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       210 li~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      +...+...|+.++|.++|+++.+..
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            6667888999999999999998765

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.61  E-value=0.026  Score=45.98  Aligned_cols=72  Identities=17%  Similarity=0.244  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHHHH
Q 013010          324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-----DGGSVPREYTYK  397 (451)
Q Consensus       324 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~~  397 (451)
                      +...++..+...|++++|..+...+....  +.+...|..+|.+|...|+..+|.+.|+.+.     +.|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d--P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD--PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            45567777788899999999999998877  6788899999999999999999999988775     358988877543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.60  E-value=0.13  Score=51.32  Aligned_cols=145  Identities=9%  Similarity=-0.039  Sum_probs=101.8

Q ss_pred             CCCCCHHhHHHHHHHHHcc-----CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc--------CCHHHHHHHHH
Q 013010          127 DFFHNEMTCKEMGIVFARG-----NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE--------GLVNEALATFY  193 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~  193 (451)
                      ..+.+...|...+.+....     ++.+.|..+|++..+....   ....|..+..++...        .++..+.+..+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~---~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD---FTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            4456778888888875432     2477999999999998533   344555544444322        12334444444


Q ss_pred             HHhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHH
Q 013010          194 RMKQF-RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN  272 (451)
Q Consensus       194 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~  272 (451)
                      ..... ....+...|.++.-.+...|++++|...+++.....    |+...|..+...+...|           +.++|.
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~----ps~~a~~~lG~~~~~~G-----------~~~eA~  473 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE----MSWLNYVLLGKVYELKG-----------DNRLAA  473 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHcC-----------CHHHHH
Confidence            43332 233456778877666677899999999999999876    78999999999999999           999999


Q ss_pred             HHHHHHHhcCCCCCHhhHH
Q 013010          273 HLFRLMLFKGFVPDVVAYN  291 (451)
Q Consensus       273 ~~~~~m~~~~~~~~~~~~~  291 (451)
                      +.+.+....  .|...||.
T Consensus       474 ~~~~~A~~L--~P~~pt~~  490 (517)
T PRK10153        474 DAYSTAFNL--RPGENTLY  490 (517)
T ss_pred             HHHHHHHhc--CCCCchHH
Confidence            999888754  45555553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.59  E-value=0.63  Score=43.38  Aligned_cols=297  Identities=13%  Similarity=0.097  Sum_probs=184.2

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH--HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVF--ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN  186 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~  186 (451)
                      .|+-..|..+-....+  -+.-|..-.-.|+.+=  .-.|+++.|.+-|+.|....   .-...-...|.-..-+.|..+
T Consensus        97 AGda~lARkmt~~~~~--llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP---EtRllGLRgLyleAqr~Gare  171 (531)
T COG3898          97 AGDASLARKMTARASK--LLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP---ETRLLGLRGLYLEAQRLGARE  171 (531)
T ss_pred             cCchHHHHHHHHHHHh--hhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh---HHHHHhHHHHHHHHHhcccHH
Confidence            4555666666544432  1334555555555442  34699999999999997742   111222344444556678888


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHH--HHHHHHHHhcCCchhhhHHH
Q 013010          187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY--TILISSYCKYGMQTGCRKAI  264 (451)
Q Consensus       187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~--~~li~~~~~~g~~~~~~~~~  264 (451)
                      .|...-++.-..- +--...+...+...|..|+++.|+++++.-+...+ +.++..--  ..|+.+-...-        +
T Consensus       172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~v-ie~~~aeR~rAvLLtAkA~s~--------l  241 (531)
T COG3898         172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKV-IEKDVAERSRAVLLTAKAMSL--------L  241 (531)
T ss_pred             HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHh-hchhhHHHHHHHHHHHHHHHH--------h
Confidence            8888887776532 22367888999999999999999999988766554 34554322  22333221111        1


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013010          265 RRRIWEANHLFRLMLFKGFVPDVVA-YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE  343 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~  343 (451)
                      .-+...|...-.+..  ++.||..- --.-..++.+.|+..++-.+++.+-+..  |.+..+...+  +.+.|+  .+..
T Consensus       242 dadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~gd--ta~d  313 (531)
T COG3898         242 DADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALLYV--RARSGD--TALD  313 (531)
T ss_pred             cCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHHHH--HhcCCC--cHHH
Confidence            113344544444333  34566433 2233467889999999999999998874  5554443332  335554  3333


Q ss_pred             HHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCCchHHHHHHHHHH
Q 013010          344 MMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA-EEPSLLDDGLRKRIR  421 (451)
Q Consensus       344 ~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~a~~~~~~~~~  421 (451)
                      =++...+....+| +..+--.+..+-...|++..|..--+....  ..|....|..|.+.-... |+-+++...+-+.++
T Consensus       314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            3433333222233 455666777888889998887765554443  568888898888877666 999999888888887


Q ss_pred             hchHHHHHH
Q 013010          422 DGIEYRFRQ  430 (451)
Q Consensus       422 ~g~~~~~~~  430 (451)
                      .-=.|.|..
T Consensus       392 APrdPaW~a  400 (531)
T COG3898         392 APRDPAWTA  400 (531)
T ss_pred             CCCCCcccc
Confidence            555555543

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=96.58  E-value=0.59  Score=42.89  Aligned_cols=135  Identities=11%  Similarity=0.102  Sum_probs=80.9

Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CChh-hH
Q 013010          294 IDGCCKT-YRIERALELFDDMNK----KGCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV----PTSS-SY  361 (451)
Q Consensus       294 i~~~~~~-g~~~~a~~~~~~m~~----~g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~-~~  361 (451)
                      ...|-.. |++++|.+.|++..+    .| .+  -..++..+...+.+.|++++|.++|++........    .+.. .|
T Consensus       121 A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~  199 (282)
T PF14938_consen  121 AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF  199 (282)
T ss_dssp             HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence            3445555 788888888887643    33 22  14556778888999999999999999987754321    1222 22


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHHH
Q 013010          362 TPIIHALCEAGRVLEARDFLAELVDG--GSVPR--EYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQ  430 (451)
Q Consensus       362 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~  430 (451)
                      -..+-.+...||...|.+.+++....  ++..+  ......|++++ +.|+.+...+.+.+.-+-.--..|..
T Consensus       200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~~ld~w~~  271 (282)
T PF14938_consen  200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSISRLDNWKT  271 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS---HHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccCccHHHHH
Confidence            33334566679999999999998754  34333  34455666655 56677767777766543333333444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.56  E-value=0.28  Score=42.53  Aligned_cols=62  Identities=15%  Similarity=0.045  Sum_probs=35.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010          172 VTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      +-.....+...|++.+|.+.|+.+...-  -+--....-.+..++.+.|+++.|...+++..+.
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3344455566677777777777776531  1112334445566677777777777777776654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.42  E-value=0.016  Score=39.68  Aligned_cols=55  Identities=15%  Similarity=0.135  Sum_probs=26.0

Q ss_pred             HHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010          140 IVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  197 (451)
                      ..+.+.|++++|.+.|+.+.+...   .+...+..+..++...|++++|...|+++.+
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P---~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDP---DNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334445555555555555554431   1344444455555555555555555555443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.40  E-value=0.016  Score=39.63  Aligned_cols=59  Identities=20%  Similarity=0.226  Sum_probs=50.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010          175 LIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       175 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      +...+...|++++|.+.|++..+.. +-+...+..+..++...|++++|..+|++..+..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4567888999999999999999875 3367888889999999999999999999997654

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.38  E-value=0.062  Score=42.34  Aligned_cols=57  Identities=5%  Similarity=0.008  Sum_probs=42.5

Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 013010          315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA  371 (451)
Q Consensus       315 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  371 (451)
                      .....|+..+..+++.+|+..|++..|+++.+...+......+..+|..|+.-....
T Consensus        45 ~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   45 SSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            445678888888888888888888888888888777665455577788777654443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.38  E-value=0.22  Score=40.50  Aligned_cols=72  Identities=24%  Similarity=0.275  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH-----
Q 013010          205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML-----  279 (451)
Q Consensus       205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~-----  279 (451)
                      .+...++..+...|++++|..+...+....   |-+...|..+|.+|...|           +..+|.++|+.+.     
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---P~~E~~~~~lm~~~~~~g-----------~~~~A~~~Y~~~~~~l~~  128 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD---PYDEEAYRLLMRALAAQG-----------RRAEALRVYERYRRRLRE  128 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS---TT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHCc-----------CHHHHHHHHHHHHHHHHH
Confidence            455666777788899999999998888765   467888899999999999           7778888887664     


Q ss_pred             hcCCCCCHhhH
Q 013010          280 FKGFVPDVVAY  290 (451)
Q Consensus       280 ~~~~~~~~~~~  290 (451)
                      +.|+.|+..+-
T Consensus       129 elg~~Ps~~~~  139 (146)
T PF03704_consen  129 ELGIEPSPETR  139 (146)
T ss_dssp             HHS----HHHH
T ss_pred             HhCcCcCHHHH
Confidence            34788876553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.36  E-value=0.82  Score=42.04  Aligned_cols=151  Identities=17%  Similarity=0.238  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCC
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK--TY----RIERALELFDDMNKKGC---IPNRVTYNSFIRYYSVVNE  337 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~g~---~p~~~t~~~li~~~~~~g~  337 (451)
                      .+++...+++.|.+.|++-+..+|-+.......  ..    ...+|..+|+.|++...   .++..++..|+..  ..++
T Consensus        77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~  154 (297)
T PF13170_consen   77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED  154 (297)
T ss_pred             HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence            677899999999999999998877663333332  22    36679999999998742   3466777777655  3333


Q ss_pred             ----HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010          338 ----IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR---VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS  410 (451)
Q Consensus       338 ----~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~  410 (451)
                          .+.+..+|+.+.+.|..+-|..-+.+-+-+++....   ...+.++++.+.+.|+++....|..+ ..++-.++.+
T Consensus       155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l-GlLall~~~~  233 (297)
T PF13170_consen  155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL-GLLALLEDPE  233 (297)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH-HHHHhcCCch
Confidence                467888899999888755555444444444444322   45788999999999999988887665 3333333333


Q ss_pred             -hHHHHHHHHH
Q 013010          411 -LLDDGLRKRI  420 (451)
Q Consensus       411 -~a~~~~~~~~  420 (451)
                       ...+.+.++.
T Consensus       234 ~~~~~~i~ev~  244 (297)
T PF13170_consen  234 EKIVEEIKEVI  244 (297)
T ss_pred             HHHHHHHHHHH
Confidence             4444444443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.21  E-value=0.18  Score=52.35  Aligned_cols=181  Identities=14%  Similarity=0.052  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALA  190 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  190 (451)
                      ...|+..|-...+   ..++ ...|..|...|+...+...|.+.|+...+.+..   +...+....+.|++..+++.|..
T Consensus       474 ~~~al~ali~alr---ld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat---daeaaaa~adtyae~~~we~a~~  547 (1238)
T KOG1127|consen  474 SALALHALIRALR---LDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT---DAEAAAASADTYAEESTWEEAFE  547 (1238)
T ss_pred             HHHHHHHHHHHHh---cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch---hhhhHHHHHHHhhccccHHHHHH
Confidence            3444444444332   2223 346888888888888888888888887776522   66678888999999999999998


Q ss_pred             HHHHHhhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 013010          191 TFYRMKQFR-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW  269 (451)
Q Consensus       191 ~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~  269 (451)
                      +.-..-+.. ...-...|--.--.|...++..+|...|+...+..   |-|...|..+..+|.++|           ++.
T Consensus       548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d---PkD~n~W~gLGeAY~~sG-----------ry~  613 (1238)
T KOG1127|consen  548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD---PKDYNLWLGLGEAYPESG-----------RYS  613 (1238)
T ss_pred             HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC---chhHHHHHHHHHHHHhcC-----------cee
Confidence            843332211 00011222223334667788888888888777665   358889999999999999           888


Q ss_pred             HHHHHHHHHHhcCCCCCHhhHHHH--HHHHHhcCCHHHHHHHHHHHHh
Q 013010          270 EANHLFRLMLFKGFVPDVVAYNCL--IDGCCKTYRIERALELFDDMNK  315 (451)
Q Consensus       270 ~a~~~~~~m~~~~~~~~~~~~~~l--i~~~~~~g~~~~a~~~~~~m~~  315 (451)
                      .|.++|.+....  .|+ .+|...  .-.-|..|.+.+|...+.....
T Consensus       614 ~AlKvF~kAs~L--rP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  614 HALKVFTKASLL--RPL-SKYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             hHHHhhhhhHhc--CcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            899999877654  343 233222  2234667888888887776543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.19  E-value=1.7  Score=44.04  Aligned_cols=263  Identities=11%  Similarity=0.058  Sum_probs=153.3

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCC--CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGN--GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      .+|..+..-.-.+|+.+-|..+++.=...+.  +...+..-+..-+.-+.+.|+.+....++-.|.+.   .+...+...
T Consensus       508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~  584 (829)
T KOG2280|consen  508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT  584 (829)
T ss_pred             eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH
Confidence            4566666666678999999988865433321  11223334566777778888888888877777652   222222221


Q ss_pred             H----------HHHHhc------------CChHHHHHHH--HHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHH
Q 013010          211 I----------NALCRV------------GNFNKARFLL--EQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR  266 (451)
Q Consensus       211 i----------~~~~~~------------g~~~~a~~~~--~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~  266 (451)
                      +          .-+++.            ++-..+..-|  +....... +.+-..........+.+.....-..+.+. 
T Consensus       585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~-~~~r~~~lk~~a~~~a~sk~~s~e~ka~e-  662 (829)
T KOG2280|consen  585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET-IEGRIPALKTAANAFAKSKEKSFEAKALE-  662 (829)
T ss_pred             HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh-hcccchhHHHHHHHHhhhhhhhhHHHHHH-
Confidence            1          111121            1111111111  11000000 00111122333344444432111111111 


Q ss_pred             HHHHHHHHHHHHHh-cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010          267 RIWEANHLFRLMLF-KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM  345 (451)
Q Consensus       267 ~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~  345 (451)
                      +...-+++.+.+.. .|.....-+.+--+.-+...|+..+|.++-.+.+    .||...|-.=+.+++..+++++-+++-
T Consensus       663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfA  738 (829)
T KOG2280|consen  663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFA  738 (829)
T ss_pred             HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHH
Confidence            22333344444442 3445555677777888889999999998888765    578999999999999999998877665


Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       346 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      ..++      + +.-|...+.+|.+.|+.++|.+++-+.-     +..    -...+|.+.|++.+|.+.--+..
T Consensus       739 kskk------s-PIGy~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A~~~r  797 (829)
T KOG2280|consen  739 KSKK------S-PIGYLPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLAAEHR  797 (829)
T ss_pred             hccC------C-CCCchhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHHHHhc
Confidence            5442      2 5788999999999999999999986532     111    45788999999887766655444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.16  E-value=0.034  Score=38.46  Aligned_cols=62  Identities=18%  Similarity=0.211  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 013010          322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG-RVLEARDFLAELV  385 (451)
Q Consensus       322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~  385 (451)
                      ..+|..+-..+...|++++|+..|.+..+..  +-+...|..+-.+|...| ++++|.+.+++.+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            3444455555555555555555555555544  334445555555555555 4555555555443

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.12  E-value=0.7  Score=48.20  Aligned_cols=179  Identities=15%  Similarity=0.102  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010          185 VNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA  263 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~  263 (451)
                      ...|+..|-+....  .++ ...|..|...|+...+...|.+.|+...+..   +.+........+.|++..        
T Consensus       474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD---atdaeaaaa~adtyae~~--------  540 (1238)
T KOG1127|consen  474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD---ATDAEAAAASADTYAEES--------  540 (1238)
T ss_pred             HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---chhhhhHHHHHHHhhccc--------
Confidence            44444444444432  222 4567777777887778888888888887765   247778888888998888        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHhhHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010          264 IRRRIWEANHLFRLMLFKGFVPDVVAYNC--LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       264 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A  341 (451)
                         .++.|..+.-..-+.. +.-...+|-  .--.|.+.++...|..-|+...... +-|...|..+..+|...|++..|
T Consensus       541 ---~we~a~~I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~A  615 (1238)
T KOG1127|consen  541 ---TWEEAFEICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHA  615 (1238)
T ss_pred             ---cHHHHHHHHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehH
Confidence               7788877743322211 111122222  2234567788888888888777653 22788899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHH--HHHHcCCHHHHHHHHHHHH
Q 013010          342 IEMMRKMQNLNHGVPTSSSYTPIIH--ALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       342 ~~~~~~m~~~~~~~p~~~~~~~li~--~~~~~g~~~~A~~l~~~m~  385 (451)
                      .++|.+.....   |+ .+|.....  .-|..|.+.+|...+...+
T Consensus       616 lKvF~kAs~Lr---P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  616 LKVFTKASLLR---PL-SKYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHhhhhhHhcC---cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99998887653   33 34443333  3567789999988887765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.11  E-value=0.034  Score=38.51  Aligned_cols=62  Identities=10%  Similarity=0.111  Sum_probs=33.6

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-CHHHHHHHHHHHhh
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-LVNEALATFYRMKQ  197 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~  197 (451)
                      ..|..+...+...|++++|...|.+..+.+.   .+...|..+-.+|...| ++++|++.|+...+
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p---~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDP---NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHST---THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4455555555555666666666655555531   14445555555555555 45555555555443

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.09  E-value=1.2  Score=41.43  Aligned_cols=110  Identities=14%  Similarity=0.107  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 013010          243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR  322 (451)
Q Consensus       243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  322 (451)
                      +.+..|.-+...|           ....|.++-.+..    .||..-|-..+.+++..++|++-.++-..    .-  ++
T Consensus       179 Sl~~Ti~~li~~~-----------~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sP  237 (319)
T PF04840_consen  179 SLNDTIRKLIEMG-----------QEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SP  237 (319)
T ss_pred             CHHHHHHHHHHCC-----------CHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CC
Confidence            3444455666666           5666666655542    46777788888888888888877665432    11  34


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      .-|..++.+|.+.|+..+|..+...+.           +..-+..|.+.|++.+|.+.-.+.
T Consensus       238 IGyepFv~~~~~~~~~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  238 IGYEPFVEACLKYGNKKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             CChHHHHHHHHHCCCHHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence            667788888888888888888777721           144567778888888887765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.00  E-value=0.16  Score=45.77  Aligned_cols=99  Identities=13%  Similarity=0.109  Sum_probs=71.0

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChhhH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN----RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSY  361 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~  361 (451)
                      ...|+..+..+.+.|++++|...|+.+.+.  -|+    ...+-.+-..|...|++++|...|..+.+.... ......+
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl  220 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM  220 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence            345666665556678999999999988876  343    246667778888899999999999998875421 1123344


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          362 TPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       362 ~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      -.+...+...|+.++|.++|+.+++.
T Consensus       221 ~klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        221 FKVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            44556677889999999999888764

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.95  E-value=0.14  Score=45.89  Aligned_cols=91  Identities=20%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                      +++++|+..|.+..+.. +-|.+-|..=..+|++.|.++.|++-.+.....  .| ...+|..|=.+|...|++.+|++.
T Consensus        95 ~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~~A~~a  171 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYEEAIEA  171 (304)
T ss_pred             hhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence            46777777777766542 234555666666777777777776666655543  23 246677777777777777777777


Q ss_pred             HHHHHhcCCCCCChhhHH
Q 013010          345 MRKMQNLNHGVPTSSSYT  362 (451)
Q Consensus       345 ~~~m~~~~~~~p~~~~~~  362 (451)
                      |++..+..   |+-.+|-
T Consensus       172 ykKaLeld---P~Ne~~K  186 (304)
T KOG0553|consen  172 YKKALELD---PDNESYK  186 (304)
T ss_pred             HHhhhccC---CCcHHHH
Confidence            77666543   4444443

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.92  E-value=0.61  Score=40.62  Aligned_cols=208  Identities=14%  Similarity=0.090  Sum_probs=113.1

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ...|..-..+|....++++|...+.+..+-. ..  +...|       -....++.|.-+.++|.+.  .--+..|+-..
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~y-En--nrslf-------hAAKayEqaamLake~~kl--sEvvdl~eKAs   98 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-EN--NRSLF-------HAAKAYEQAAMLAKELSKL--SEVVDLYEKAS   98 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hh--cccHH-------HHHHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence            3456666677777778887777666654321 11  21111       1123455666666666552  22344566666


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh---cC--CCCC
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF---KG--FVPD  286 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~---~~--~~~~  286 (451)
                      ..|...|..+.|-..+++.-+.--.+                             +.++|+++|++-..   .+  .+.-
T Consensus        99 ~lY~E~GspdtAAmaleKAak~lenv-----------------------------~Pd~AlqlYqralavve~~dr~~ma  149 (308)
T KOG1585|consen   99 ELYVECGSPDTAAMALEKAAKALENV-----------------------------KPDDALQLYQRALAVVEEDDRDQMA  149 (308)
T ss_pred             HHHHHhCCcchHHHHHHHHHHHhhcC-----------------------------CHHHHHHHHHHHHHHHhccchHHHH
Confidence            67777777766655555432211001                             33344444433221   10  1112


Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCChh
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG--VPTSS  359 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~  359 (451)
                      ...|..+-..+.+...+++|-..+..-...    .--|+ ...|-..|-.|....++..|...++.-.+.+..  .-+..
T Consensus       150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r  229 (308)
T KOG1585|consen  150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSR  229 (308)
T ss_pred             HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHH
Confidence            233455556677777777766555432211    11122 244666777777888999999999885443321  34567


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHH
Q 013010          360 SYTPIIHALCEAGRVLEARDFL  381 (451)
Q Consensus       360 ~~~~li~~~~~~g~~~~A~~l~  381 (451)
                      +...|+.+| ..|+.+++.+++
T Consensus       230 ~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  230 SLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHh-ccCCHHHHHHHH
Confidence            888888877 567777766554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.87  E-value=0.24  Score=46.27  Aligned_cols=290  Identities=14%  Similarity=0.033  Sum_probs=174.5

Q ss_pred             CHHhHHHHHH--HHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHH--Hhh--CCC-CC
Q 013010          131 NEMTCKEMGI--VFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYR--MKQ--FRC-RP  202 (451)
Q Consensus       131 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~--m~~--~g~-~p  202 (451)
                      +..++...+.  -+|+.|+......+|+...+.|-.... =..+|..|-++|.-.+++++|+++..-  ...  .|- .-
T Consensus        14 ~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklG   93 (639)
T KOG1130|consen   14 DRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLG   93 (639)
T ss_pred             hhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhc
Confidence            3344444443  478999999999999999888743211 123567777888888888888876321  111  010 01


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHH----HHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh---------HHHHHHHH
Q 013010          203 DVYAYNVVINALCRVGNFNKARFL----LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR---------KAIRRRIW  269 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~---------~~~~~~~~  269 (451)
                      ..-+...|-+.+--.|.+++|.-.    ++-.++.|-.+ ....+|..+-..|...|.-.++.         ..++..++
T Consensus        94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~  172 (639)
T KOG1130|consen   94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALE  172 (639)
T ss_pred             cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHH
Confidence            122233334444445566665432    22223333211 23456667788887777433222         12334666


Q ss_pred             HHHHHHHHHHh----cCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCCC-CHHHHHHHHHHHHhcCCHH
Q 013010          270 EANHLFRLMLF----KGFV-PDVVAYNCLIDGCCKTYRIERALELFDDM----NKKGCIP-NRVTYNSFIRYYSVVNEID  339 (451)
Q Consensus       270 ~a~~~~~~m~~----~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p-~~~t~~~li~~~~~~g~~~  339 (451)
                      .|.++|.+=.+    .|-. .-...|..|-+.|.-.|+++.|+...+.-    ++.|-+. -...+..|-++++-.|+++
T Consensus       173 ~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe  252 (639)
T KOG1130|consen  173 NAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFE  252 (639)
T ss_pred             HHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccH
Confidence            67777654322    2211 12355777777788889999988765542    2334322 3567788888999999999


Q ss_pred             HHHHHHHHHH----hcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH----hC-CCCCCHHHHHHHHHHHHhcCCCc
Q 013010          340 KAIEMMRKMQ----NLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV----DG-GSVPREYTYKLVCDALNAAEEPS  410 (451)
Q Consensus       340 ~A~~~~~~m~----~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~-g~~p~~~t~~~li~~~~~~g~~~  410 (451)
                      .|.+.|+.-.    +.|.......++-.|-.+|.-..++++|+.++.+=.    +. ...-....|-+|-.++...|..+
T Consensus       253 ~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~  332 (639)
T KOG1130|consen  253 LAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHR  332 (639)
T ss_pred             hHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHH
Confidence            9999887643    333323445566677788888888899988876433    11 22235678888999999999988


Q ss_pred             hHHHHHHHHHH
Q 013010          411 LLDDGLRKRIR  421 (451)
Q Consensus       411 ~a~~~~~~~~~  421 (451)
                      .|......-++
T Consensus       333 kAl~fae~hl~  343 (639)
T KOG1130|consen  333 KALYFAELHLR  343 (639)
T ss_pred             HHHHHHHHHHH
Confidence            88766655543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.80  E-value=0.26  Score=43.28  Aligned_cols=61  Identities=7%  Similarity=0.049  Sum_probs=33.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010          172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL  232 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  232 (451)
                      .+.++.++.-.|.+.-...++.+..+..-+.++.....+...-.+.|+.+.|...|++..+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek  240 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEK  240 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3444444444555555555555555544444555555555555556666666666655543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.80  E-value=0.071  Score=47.15  Aligned_cols=89  Identities=11%  Similarity=0.135  Sum_probs=61.2

Q ss_pred             CCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHH
Q 013010          284 VPDVVAYNCLIDGCCK-----TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN----------------EIDKAI  342 (451)
Q Consensus       284 ~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----------------~~~~A~  342 (451)
                      ..|..+|-+.+..+..     .+.++-....++.|.+-|+.-|..+|+.||+.+-+..                +-+-++
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            3466666666666653     3567777777888888888888888888888765432                234466


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGR  373 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~  373 (451)
                      .++++|...|. .||..+-..|+.+|.+.+-
T Consensus       144 ~vLeqME~hGV-mPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  144 KVLEQMEWHGV-MPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHcCC-CCchHHHHHHHHHhccccc
Confidence            77777777766 6777777777777766654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.78  E-value=0.36  Score=42.48  Aligned_cols=140  Identities=11%  Similarity=0.053  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 013010          243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR  322 (451)
Q Consensus       243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  322 (451)
                      +.+.++..+.-.+           .+.-....+.+..+..-+.++.....|.+.-.+.|+.+.|...|++..+..-..|.
T Consensus       179 Vmy~~~~~llG~k-----------Ey~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~  247 (366)
T KOG2796|consen  179 VMYSMANCLLGMK-----------EYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG  247 (366)
T ss_pred             HHHHHHHHHhcch-----------hhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc
Confidence            4456666666666           67777888888888766677888889999999999999999999988776555566


Q ss_pred             HHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010          323 VTYNSFIR-----YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK  397 (451)
Q Consensus       323 ~t~~~li~-----~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  397 (451)
                      .+++.++.     .|.-.+++..|...+.+....+  ..|+..-|.=.-.+.-.|+..+|.+.++.|++..  |...+-+
T Consensus       248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--P~~~l~e  323 (366)
T KOG2796|consen  248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--PRHYLHE  323 (366)
T ss_pred             cchhHHHHhhhhhheecccchHHHHHHHhhccccC--CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC--Cccchhh
Confidence            66665543     3445678888999998888766  4455555544444455688999999999998753  4444444

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.76  E-value=0.24  Score=47.35  Aligned_cols=70  Identities=6%  Similarity=-0.085  Sum_probs=58.1

Q ss_pred             CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 013010          129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF  198 (451)
Q Consensus       129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  198 (451)
                      +.+...++.+..+|.+.|++++|...|++..+.+........+|..+..+|...|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4467789999999999999999999999988875331111146999999999999999999999999884

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.73  E-value=0.095  Score=36.65  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=35.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      ..|.+.+++++|.++++.+...+  +.+...+...-..+.+.|++++|.+.++...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34566667777777777666654  345555556666666677777777777666653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.73  E-value=0.038  Score=39.36  Aligned_cols=64  Identities=14%  Similarity=0.137  Sum_probs=41.3

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHc----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRR----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMK  196 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  196 (451)
                      .+|+.+...|...|++++|...|++..+.    |...+....+++.+..+|...|++++|++.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45777777778888888888887766543    11111125566777777777777777777777654

...

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.72  E-value=0.14  Score=45.32  Aligned_cols=34  Identities=35%  Similarity=0.496  Sum_probs=27.1

Q ss_pred             HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCC
Q 013010          221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGM  256 (451)
Q Consensus       221 ~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~  256 (451)
                      +-+.+++++|...|+-  ||..+-..|++++.+.+.
T Consensus       140 ~C~I~vLeqME~hGVm--PdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVM--PDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hHHHHHHHHHHHcCCC--CchHHHHHHHHHhccccc
Confidence            4578888888888865  888888888888888774

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.70  E-value=1  Score=37.58  Aligned_cols=137  Identities=9%  Similarity=0.072  Sum_probs=105.6

Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHH
Q 013010          283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT  362 (451)
Q Consensus       283 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~  362 (451)
                      +.|++..--.|..++...|+..+|...|++....-..-|....-.+.++....+++..|...++.+.+...-.-++.+.-
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~L  164 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHL  164 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchH
Confidence            35666666778899999999999999999988765566888888999999999999999999999887653333444566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          363 PIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       363 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      .+-+.|.-.|+...|..-|+...+.  .|+...--.-..-+.+.|+.+++...+....+
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            6778899999999999999998874  45544333344567888887777666665543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=95.57  E-value=0.93  Score=40.85  Aligned_cols=102  Identities=13%  Similarity=0.017  Sum_probs=53.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010          203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG  282 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~  282 (451)
                      |...|-.|-..|...|+.+.|..-|....+..   +++...+..+..++....+..        .-.++..+|+++....
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n~~~~~g~aeaL~~~a~~~--------~ta~a~~ll~~al~~D  223 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDNPEILLGLAEALYYQAGQQ--------MTAKARALLRQALALD  223 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCCc--------ccHHHHHHHHHHHhcC
Confidence            55666666666666666666666666555443   245555555555544443222        3345555555555432


Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010          283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK  316 (451)
Q Consensus       283 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  316 (451)
                       +-|+.+...|-..+...|++.+|...|+.|.+.
T Consensus       224 -~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         224 -PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             -CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence             223444444555555556666666666655554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.47  E-value=0.1  Score=36.49  Aligned_cols=55  Identities=18%  Similarity=0.124  Sum_probs=26.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010          178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       178 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      .|.+.+++++|.++++.+...+ +.+...|.....++.+.|++++|...|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3444455555555555554432 123344444444455555555555555555443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.47  E-value=0.23  Score=44.52  Aligned_cols=93  Identities=11%  Similarity=0.025  Sum_probs=46.4

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      .+++.+|++.|......  .+-|..-|..=..+|++.|.++.|++=.+.....+.   ....+|..|-.+|...|++++|
T Consensus        94 ~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp---~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP---HYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             hhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh---HHHHHHHHHHHHHHccCcHHHH
Confidence            33455555555555421  122333444445555555555555555555544431   1344555555555555555555


Q ss_pred             HHHHHHHhhCCCCCCHHHHH
Q 013010          189 LATFYRMKQFRCRPDVYAYN  208 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~  208 (451)
                      .+.|++..+  +.|+-.+|-
T Consensus       169 ~~aykKaLe--ldP~Ne~~K  186 (304)
T KOG0553|consen  169 IEAYKKALE--LDPDNESYK  186 (304)
T ss_pred             HHHHHhhhc--cCCCcHHHH
Confidence            555555554  345544443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.42  E-value=1.7  Score=43.65  Aligned_cols=90  Identities=19%  Similarity=0.287  Sum_probs=51.7

Q ss_pred             CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH-
Q 013010          283 FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY-  361 (451)
Q Consensus       283 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~-  361 (451)
                      ++-|....-.+..++...|.-++|.+.|-..-    .|     ..-+.+|...++|.+|.++-+...-     |.+.+. 
T Consensus       848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~~~l-----~qv~tli  913 (1189)
T KOG2041|consen  848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQRFQL-----PQVQTLI  913 (1189)
T ss_pred             cCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHhccc-----hhHHHHH
Confidence            34456666677777777777777766654321    12     1234566677777777776654221     111111 


Q ss_pred             -------------HHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          362 -------------TPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       362 -------------~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                                   ---|..+.++|++-+|.+++.+|.+
T Consensus       914 ak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  914 AKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence                         1124456677777777777777763

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.37  E-value=0.067  Score=38.07  Aligned_cols=61  Identities=18%  Similarity=0.367  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCC-hhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLN----HGVPT-SSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       324 t~~~li~~~~~~g~~~~A~~~~~~m~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      +|+.+-..|...|++++|+..|++..+..    ...|+ ..++..+-..|...|++++|.+++++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44444455555555555555555443220    00111 334445555555555555555555443

...

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.34  E-value=2.3  Score=39.17  Aligned_cols=157  Identities=14%  Similarity=0.220  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh--cCC----hHHHHHHHHHhhhCCC-CCCCCHHHHHHHHHHHHhcCCc
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVVINALCR--VGN----FNKARFLLEQMELPGF-RCPPDVYTYTILISSYCKYGMQ  257 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~a~~~~~~m~~~g~-~~~p~~~~~~~li~~~~~~g~~  257 (451)
                      +++.+.+++.|.+.|+.-+..+|-+..-....  ..+    ...|..+|+.|++.-. -..++-..+.+|+..  ...+.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45677899999999999988888764433333  222    5679999999987631 123566777777665  33322


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh-hHHHHHHHHHhc-CC--HHHHHHHHHHHHhCCCCCCHHHHHHHH-HHH
Q 013010          258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVV-AYNCLIDGCCKT-YR--IERALELFDDMNKKGCIPNRVTYNSFI-RYY  332 (451)
Q Consensus       258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~li~~~~~~-g~--~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~  332 (451)
                      +.       -.+.++.+|+.+.+.|+..+-. -+-+-+-+++.. ..  ..++.++++.+.+.|+++....|..+- -++
T Consensus       156 e~-------l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLal  228 (297)
T PF13170_consen  156 EE-------LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLAL  228 (297)
T ss_pred             HH-------HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHh
Confidence            21       5678889999999888776533 222233333322 11  457888999999999998877776552 233


Q ss_pred             HhcCC---HHHHHHHHHHHHh
Q 013010          333 SVVNE---IDKAIEMMRKMQN  350 (451)
Q Consensus       333 ~~~g~---~~~A~~~~~~m~~  350 (451)
                      ...+.   .+...++.+.+.+
T Consensus       229 l~~~~~~~~~~i~ev~~~L~~  249 (297)
T PF13170_consen  229 LEDPEEKIVEEIKEVIDELKE  249 (297)
T ss_pred             cCCchHHHHHHHHHHHHHHhh
Confidence            33333   3444444455444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.32  E-value=1.4  Score=36.76  Aligned_cols=127  Identities=18%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010          239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC  318 (451)
Q Consensus       239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  318 (451)
                      |++..-..|..+..+.|           +..+|...|++....-+.-|....-.+.++....+++..|...++++.+.. 
T Consensus        87 pTvqnr~rLa~al~elG-----------r~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~-  154 (251)
T COG4700          87 PTVQNRYRLANALAELG-----------RYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN-  154 (251)
T ss_pred             hhHHHHHHHHHHHHHhh-----------hhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC-
Confidence            56655566777777777           777777777776654445566666666666777777777777777766653 


Q ss_pred             CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010          319 IP---NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL  381 (451)
Q Consensus       319 ~p---~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~  381 (451)
                       |   ++.+--.+-+.|...|....|..-|+......   |+...-...-..+.+.|+.++|..-+
T Consensus       155 -pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y---pg~~ar~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         155 -PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY---PGPQARIYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             -CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC---CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence             2   22334455666777777777777777776654   33322222223355666655554433

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.17  E-value=1.1  Score=42.75  Aligned_cols=48  Identities=25%  Similarity=0.444  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 013010          205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK  253 (451)
Q Consensus       205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~  253 (451)
                      .+|...|++..+..-++.|..+|.+.++.|+ +.+++.+++++|..++.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h~vyi~~A~~E~~~~  445 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGHHVYIYCAFIEYYAT  445 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCcceeeeHHHHHHHhc
Confidence            4444445544444445555555555555543 23455555555554443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.14  E-value=3  Score=39.45  Aligned_cols=177  Identities=11%  Similarity=0.040  Sum_probs=102.1

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCCHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGE---EGLVNEALATFYRMKQFRCRPDVYAY  207 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~  207 (451)
                      ..+...++-+|....+++...++++.+....... ..+..+-....-++.+   .|+.++|++++..+....-.++..+|
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            3444567777999999999999999998763111 1122223344555666   89999999999997666667889999


Q ss_pred             HHHHHHHHhc---------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010          208 NVVINALCRV---------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM  278 (451)
Q Consensus       208 ~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m  278 (451)
                      ..+...|-+.         ...+.|...|.+--+    +.||.++=-.+...+.-.|+......    ...+....+..+
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe----~~~~~Y~GIN~AtLL~~~g~~~~~~~----el~~i~~~l~~l  292 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE----IEPDYYSGINAATLLMLAGHDFETSE----ELRKIGVKLSSL  292 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc----CCccccchHHHHHHHHHcCCcccchH----HHHHHHHHHHHH
Confidence            8887776542         225667777765433    23555444344444444453222111    111111111111


Q ss_pred             -HhcCC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010          279 -LFKGF---VPDVVAYNCLIDGCCKTYRIERALELFDDMNKK  316 (451)
Q Consensus       279 -~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  316 (451)
                       .+.|.   ..|-..+.+++.++.-.|+.++|.+..+.|.+.
T Consensus       293 lg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  293 LGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence             12221   223344556666666666666666666666655

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.96  E-value=2.8  Score=41.84  Aligned_cols=226  Identities=15%  Similarity=0.137  Sum_probs=121.2

Q ss_pred             HHHHHHHHccCChh--HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHH----
Q 013010          136 KEMGIVFARGNNVK--GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNV----  209 (451)
Q Consensus       136 ~~ll~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----  209 (451)
                      +..=.+|.+..+..  +...-++++.++|..|  +.   -.+...++-.|++.+|-++|.+--..+  .-...|+-    
T Consensus       602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P--~~---iLlA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMF  674 (1081)
T KOG1538|consen  602 ETARKAYIRVRDLRYLELISELEERKKRGETP--ND---LLLADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMF  674 (1081)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc--hH---HHHHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHH
Confidence            33344555544433  2233356677777544  33   134456777888999888886543221  00111111    


Q ss_pred             -HHHHHHhcCChHHHHHHHHHhhhC--CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH--HHHHHHHHHHHHHHhcCCC
Q 013010          210 -VINALCRVGNFNKARFLLEQMELP--GFRCPPDVYTYTILISSYCKYGMQTGCRKAIR--RRIWEANHLFRLMLFKGFV  284 (451)
Q Consensus       210 -li~~~~~~g~~~~a~~~~~~m~~~--g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~--~~~~~a~~~~~~m~~~~~~  284 (451)
                       ...-+...|..++-..+..+-.+.  .++ .|     .+....+..+|+.++|...+.  +-.+-+.++-+++.    .
T Consensus       675 D~aQE~~~~g~~~eKKmL~RKRA~WAr~~k-eP-----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~  744 (1081)
T KOG1538|consen  675 DYAQEFLGSGDPKEKKMLIRKRADWARNIK-EP-----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----K  744 (1081)
T ss_pred             HHHHHHhhcCChHHHHHHHHHHHHHhhhcC-Cc-----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----h
Confidence             112233334433333332221111  111 12     234445556664444333221  12233333333322    2


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh-----
Q 013010          285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-----  359 (451)
Q Consensus       285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-----  359 (451)
                      .+..+...+..-+-+...+..|-++|..|-+.         ..+++.....++|++|..+-+...+.   .||+.     
T Consensus       745 ~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaq  812 (1081)
T KOG1538|consen  745 AEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQ  812 (1081)
T ss_pred             hhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc---cccccchHHH
Confidence            24455555555566777788899999887643         34677778889999999988876653   34432     


Q ss_pred             ------hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 013010          360 ------SYTPIIHALCEAGRVLEARDFLAELVDGGSV  390 (451)
Q Consensus       360 ------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  390 (451)
                            -|.-.=.+|.++|+-.+|..+++++-...+.
T Consensus       813 wLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav~  849 (1081)
T KOG1538|consen  813 WLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAVA  849 (1081)
T ss_pred             HhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhhh
Confidence                  2444556888999999999999988765443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.84  E-value=0.87  Score=40.49  Aligned_cols=100  Identities=15%  Similarity=0.035  Sum_probs=82.2

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHH
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVI  211 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li  211 (451)
                      .|+.-+..+ +.|++..|...|....+...........+--|..++...|++++|..+|..+.+.-  .+--..++--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            577666654 57889999999999999876666667778889999999999999999999998742  122346777777


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCC
Q 013010          212 NALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      .+..+.|+.++|..+|+++.+.-
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHC
Confidence            88899999999999999998874

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.78  E-value=1.2  Score=42.31  Aligned_cols=150  Identities=14%  Similarity=0.203  Sum_probs=110.1

Q ss_pred             CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-HHhCC
Q 013010          240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDD-MNKKG  317 (451)
Q Consensus       240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~-m~~~g  317 (451)
                      -..+|...+++..+..           .++.|..+|-+..+.| +.+++..++++|..+|. |+..-|..+|+. |+.. 
T Consensus       396 ~t~v~C~~~N~v~r~~-----------Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~f-  462 (660)
T COG5107         396 LTFVFCVHLNYVLRKR-----------GLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLKF-  462 (660)
T ss_pred             hhhHHHHHHHHHHHHh-----------hHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHhC-
Confidence            3467888888887777           7889999999998888 67889999999987775 677888999986 4443 


Q ss_pred             CCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010          318 CIPNRVTY-NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY  394 (451)
Q Consensus       318 ~~p~~~t~-~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  394 (451)
                        ||...| +-.+..+...++-..|..+|+.....-  .-+  ...|..+|.-=..-|+...|..+-+.|.+  +.|...
T Consensus       463 --~d~~~y~~kyl~fLi~inde~naraLFetsv~r~--~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen  536 (660)
T COG5107         463 --PDSTLYKEKYLLFLIRINDEENARALFETSVERL--EKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQEN  536 (660)
T ss_pred             --CCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHH--HHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHh
Confidence              454444 456777788899999999998544321  112  46888899888888999888888888776  456666


Q ss_pred             HHHHHHHHHHhcCC
Q 013010          395 TYKLVCDALNAAEE  408 (451)
Q Consensus       395 t~~~li~~~~~~g~  408 (451)
                      +...+.+-|.-..+
T Consensus       537 ~~evF~Sry~ik~d  550 (660)
T COG5107         537 LIEVFTSRYAIKAD  550 (660)
T ss_pred             HHHHHHHHHhhhcc
Confidence            66666555554443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.63  E-value=4.1  Score=38.54  Aligned_cols=102  Identities=18%  Similarity=0.086  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHh---cCChHH
Q 013010          150 GLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR---CRPDVYAYNVVINALCR---VGNFNK  222 (451)
Q Consensus       150 ~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~  222 (451)
                      +..+.+..|..+-..+ ..+..+.-.++-+|-...+++...++++.|...-   +.-....--...-++.+   .|+.++
T Consensus       121 ~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~  200 (374)
T PF13281_consen  121 ELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREK  200 (374)
T ss_pred             HHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHH
Confidence            3444455555442221 2344445566667999999999999999998741   11122222233345556   899999


Q ss_pred             HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 013010          223 ARFLLEQMELPGFRCPPDVYTYTILISSYCK  253 (451)
Q Consensus       223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~  253 (451)
                      |++++..+.....  .++..+|..+.+.|-.
T Consensus       201 Al~il~~~l~~~~--~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  201 ALQILLPVLESDE--NPDPDTLGLLGRIYKD  229 (374)
T ss_pred             HHHHHHHHHhccC--CCChHHHHHHHHHHHH
Confidence            9999999555443  3788888888877744

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=3.1  Score=37.56  Aligned_cols=99  Identities=17%  Similarity=0.099  Sum_probs=78.3

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCCCCHHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG---NFNKARFLLEQMELPGFRCPPDVYTY  244 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~p~~~~~  244 (451)
                      |...|-.|-..|...|+.+.|..-|....+.. .++...+..+..++....   .-.++..+|+++.....   -|+.+.
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~---~~iral  230 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP---ANIRAL  230 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC---ccHHHH
Confidence            77789999999999999999999999887742 345666666666555432   24578899999988763   477788


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      ..|...+...|           ++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g-----------~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQG-----------DYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcc-----------cHHHHHHHHHHHHhc
Confidence            88888899999           899999999999876

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.57  E-value=0.77  Score=43.10  Aligned_cols=271  Identities=16%  Similarity=0.080  Sum_probs=146.7

Q ss_pred             hhhcCHHHHHHHHHHHhhcCCCC---CCHHhHHHHHHHHHccCChhHHHHHHHH--HHHcCCCC-CccHHhHHHHHHHHH
Q 013010          107 KVTLGLNKATEFYHWVERFFDFF---HNEMTCKEMGIVFARGNNVKGLWDFLKD--MSRRGNGE-LVTTSSVTCLIKVLG  180 (451)
Q Consensus       107 ~~~~~~~~A~~~f~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~--m~~~~~~~-~~~~~~~~~li~~~~  180 (451)
                      ...|+.+.-+++|+..... |-.   .=..+|..|..+|.-.+++++|.++...  ...+-... .-...+...|-+.+-
T Consensus        28 ck~gdcraGv~ff~aA~qv-GTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK  106 (639)
T KOG1130|consen   28 CKMGDCRAGVDFFKAALQV-GTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK  106 (639)
T ss_pred             HhccchhhhHHHHHHHHHh-cchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence            3457788888899888753 321   1234677777788888899999888632  11110000 001122233444444


Q ss_pred             hcCCHHHHHHHHHH----HhhCCC-CCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHh----h
Q 013010          181 EEGLVNEALATFYR----MKQFRC-RPDVYAYNVVINALCRVGN--------------------FNKARFLLEQM----E  231 (451)
Q Consensus       181 ~~g~~~~A~~~~~~----m~~~g~-~p~~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m----~  231 (451)
                      -.|.+++|+-.-.+    ..+.|- ......+-.+.+.|...|+                    ++.|.++|.+=    .
T Consensus       107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~  186 (639)
T KOG1130|consen  107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE  186 (639)
T ss_pred             hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566655433211    112110 1123334444555554443                    23344444331    2


Q ss_pred             hCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 013010          232 LPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFD  311 (451)
Q Consensus       232 ~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  311 (451)
                      +.|-. -.--..|..|-+.|.-.|+++.+...-+.++.-|.++=++.      .....+..+-+++.-.|+++.|.+.|+
T Consensus       187 ~lgDr-~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA------aeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  187 KLGDR-LAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA------AERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             HhhhH-HhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH------HHHHhhcccchhhhhhcccHhHHHHHH
Confidence            22210 01223455566666666633333222222222222222222      233567788889999999999999887


Q ss_pred             HHH----hCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010          312 DMN----KKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN----LNHGVPTSSSYTPIIHALCEAGRVLEARDFLA  382 (451)
Q Consensus       312 ~m~----~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~----~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~  382 (451)
                      .-.    +.|-+ ....+.-+|-++|.-..++++|+.++.+-..    .+-..-....|-.|-.+|...|..++|+.+..
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            643    22322 2345556678888888899999988875332    11112345788889999999999999988776


Q ss_pred             HHH
Q 013010          383 ELV  385 (451)
Q Consensus       383 ~m~  385 (451)
                      .-+
T Consensus       340 ~hl  342 (639)
T KOG1130|consen  340 LHL  342 (639)
T ss_pred             HHH
Confidence            544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.55  E-value=3.2  Score=40.33  Aligned_cols=76  Identities=16%  Similarity=0.183  Sum_probs=43.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010          293 LIDGCCKTYRIERALELFDDMNKKG-CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL  368 (451)
Q Consensus       293 li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  368 (451)
                      +..++-+.|+.++|.+.+++|.+.. ..-+......|+.++...+.+.++..++.+..+....+.-...|+..+-.+
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLka  341 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKA  341 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHH
Confidence            4444456677777777777776542 111233455677777777777777777777654332122233455544333

The molecular function of this protein is uncertain.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.52  E-value=2.5  Score=41.87  Aligned_cols=167  Identities=16%  Similarity=0.130  Sum_probs=112.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC----CHHHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHHHHHHH
Q 013010          206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPP----DVYTYTILISSYCKY--GMQTGCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p----~~~~~~~li~~~~~~--g~~~~~~~~~~~~~~~a~~~~~~m~  279 (451)
                      .+..+++..+-.|+-+.+++.+.+-.+.+.-..|    -.-+|+..+..++..  +.         ...+.|.+++..+.
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~---------~~~~~a~~lL~~~~  260 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGED---------VPLEEAEELLEEML  260 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccC---------CCHHHHHHHHHHHH
Confidence            3455666677789999999988876654321111    123466666666655  21         17889999999998


Q ss_pred             hcCCCCCHhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 013010          280 FKGFVPDVVAYNCLI-DGCCKTYRIERALELFDDMNKKG--C-IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV  355 (451)
Q Consensus       280 ~~~~~~~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g--~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  355 (451)
                      ++  -|+...|...- ..+...|++++|.+.|+......  . +.....+--+...+.-.+++++|.+.|..+.+..  .
T Consensus       261 ~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s--~  336 (468)
T PF10300_consen  261 KR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES--K  336 (468)
T ss_pred             Hh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--c
Confidence            76  67877775544 34567899999999999765321  1 1234445556667888999999999999999876  3


Q ss_pred             CChhhHHHHHHH-HHHcCCH-------HHHHHHHHHHH
Q 013010          356 PTSSSYTPIIHA-LCEAGRV-------LEARDFLAELV  385 (451)
Q Consensus       356 p~~~~~~~li~~-~~~~g~~-------~~A~~l~~~m~  385 (451)
                      -+..+|.-+..+ +...|+.       ++|.++|.+..
T Consensus       337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            445555554443 3445766       88888888765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=94.44  E-value=0.85  Score=43.78  Aligned_cols=64  Identities=19%  Similarity=0.073  Sum_probs=51.6

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR----VTYNSFIRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                      +...++.+-.+|.+.|++++|...|+...+.  .|+.    .+|..+-.+|...|+.++|++.+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4567888888888889999999998887766  4653    35888888888889999999998888875

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.33  E-value=2  Score=33.71  Aligned_cols=68  Identities=16%  Similarity=0.190  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010          203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG  282 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~  282 (451)
                      +....+..++.+...|+-|.-.+++.++.+.+   .++....-.+..+|.+.|           +..++.+++.+.-+.|
T Consensus        85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~---~~~p~~L~kia~Ay~klg-----------~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE---EINPEFLVKIANAYKKLG-----------NTREANELLKEACEKG  150 (161)
T ss_dssp             --HHHHHHHHHHHHTT-HHHHHHHHHHH--------S-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHhc-----------chhhHHHHHHHHHHhc
Confidence            45667788889999999999999999987644   378888899999999999           8889999999998888


Q ss_pred             CC
Q 013010          283 FV  284 (451)
Q Consensus       283 ~~  284 (451)
                      ++
T Consensus       151 ~k  152 (161)
T PF09205_consen  151 LK  152 (161)
T ss_dssp             -H
T ss_pred             hH
Confidence            64

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.25  E-value=1.4  Score=35.35  Aligned_cols=78  Identities=14%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 013010          139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR  216 (451)
Q Consensus       139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  216 (451)
                      .....+.|++++|.+.|+.+..+-........+--.|+.+|.+.+++++|...+++..+..-..--.-|-..+.+++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            333455788888888888888876544455666677888888888888888888888775322222344444444443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.18  E-value=0.64  Score=41.95  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHH
Q 013010          322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD-----GGSVPREYTY  396 (451)
Q Consensus       322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~  396 (451)
                      ..++..++..+...|+.+.+.+.++++....  +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d--p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD--PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            3455667777777788888888888887766  67777888888888888888888888777653     5888888877


Q ss_pred             HHHHHHHH
Q 013010          397 KLVCDALN  404 (451)
Q Consensus       397 ~~li~~~~  404 (451)
                      ....+...
T Consensus       231 ~~y~~~~~  238 (280)
T COG3629         231 ALYEEILR  238 (280)
T ss_pred             HHHHHHhc
Confidence            77766633

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.78  E-value=2.9  Score=33.53  Aligned_cols=126  Identities=17%  Similarity=0.156  Sum_probs=79.4

Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010          245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT  324 (451)
Q Consensus       245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  324 (451)
                      ..++..+...+           .......+++.+...+ ..+....|.++..|++... .+..+.+..      .++...
T Consensus        11 ~~vv~~~~~~~-----------~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd   71 (140)
T smart00299       11 SEVVELFEKRN-----------LLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYD   71 (140)
T ss_pred             HHHHHHHHhCC-----------cHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCC
Confidence            45666776666           6778888888887766 3677788888888887643 344444442      123344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010          325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-GRVLEARDFLAELVDGGSVPREYTYKLVCDAL  403 (451)
Q Consensus       325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~  403 (451)
                      ....+..|.+.+.++++..++..+..          |...+..+... ++++.|.+++.+-      -+...|..++..+
T Consensus        72 ~~~~~~~c~~~~l~~~~~~l~~k~~~----------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~  135 (140)
T smart00299       72 IEKVGKLCEKAKLYEEAVELYKKDGN----------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKAL  135 (140)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHhhcC----------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHH
Confidence            45577777777888888888766532          22233333344 7777777776641      2555677776666


Q ss_pred             Hh
Q 013010          404 NA  405 (451)
Q Consensus       404 ~~  405 (451)
                      ..
T Consensus       136 l~  137 (140)
T smart00299      136 LD  137 (140)
T ss_pred             Hc
Confidence            54

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.74  E-value=2.7  Score=33.04  Aligned_cols=143  Identities=13%  Similarity=0.149  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                      .|.+++..++..+...+.   +..-||-+|--....-+-+-..++++..-+   -.|..          .+|++......
T Consensus        15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi~C   78 (161)
T PF09205_consen   15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVIEC   78 (161)
T ss_dssp             TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHHHH
T ss_pred             hchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHHHH
Confidence            356666666666655432   344455555444444333344444444332   22322          22333333333


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhch
Q 013010          345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGI  424 (451)
Q Consensus       345 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~  424 (451)
                      +-.+      ..+.......++.+...|+-+.-.+++.++.+ +-.+++...-.+..||.+-|+..++.+++.+.=++|+
T Consensus        79 ~~~~------n~~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   79 YAKR------NKLSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHT------T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHh------cchHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            2221      12345566677888888888888888888875 3456777888889999999999999999999889998


Q ss_pred             HHHHHH
Q 013010          425 EYRFRQ  430 (451)
Q Consensus       425 ~~~~~~  430 (451)
                      +.....
T Consensus       152 kEAC~n  157 (161)
T PF09205_consen  152 KEACRN  157 (161)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            775544

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.65  E-value=2.3  Score=33.31  Aligned_cols=53  Identities=17%  Similarity=0.203  Sum_probs=24.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       297 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      ++..|+++.|++.|.+.... .+-....||.=..+|.-.|+.++|++=+++..+
T Consensus        53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            34444555555555444332 111344444444444445555555544444444

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.62  E-value=5.6  Score=36.33  Aligned_cols=15  Identities=20%  Similarity=0.118  Sum_probs=9.6

Q ss_pred             HHHcCCHHHHHHHHH
Q 013010          368 LCEAGRVLEARDFLA  382 (451)
Q Consensus       368 ~~~~g~~~~A~~l~~  382 (451)
                      +.+.+++++|.+.|+
T Consensus       256 ~~~~k~y~~A~~w~~  270 (278)
T PF08631_consen  256 HYKAKNYDEAIEWYE  270 (278)
T ss_pred             HHhhcCHHHHHHHHH
Confidence            345567777777765

It is also involved in sporulation [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.61  E-value=1.2  Score=39.56  Aligned_cols=98  Identities=16%  Similarity=0.110  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-hhhHHHHH
Q 013010          289 AYNCLIDGCCKTYRIERALELFDDMNKKGC--IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT-SSSYTPII  365 (451)
Q Consensus       289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-~~~~~~li  365 (451)
                      .|+.-+.. .+.|++..|...|....+..-  .-....+-.|-.++...|++++|..+|..+.+.....|- +.++--|.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            57776664 566789999999999887631  113344556888999999999999999998876543333 25677777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhC
Q 013010          366 HALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       366 ~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      ....+.|+.++|+..|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            8888999999999999998865

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.37  E-value=4.4  Score=40.14  Aligned_cols=150  Identities=15%  Similarity=0.139  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHhc-CCCCC-----HhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhc
Q 013010          267 RIWEANHLFRLMLFK-GFVPD-----VVAYNCLIDGCCK----TYRIERALELFDDMNKKGCIPNRVTYNSFI-RYYSVV  335 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li-~~~~~~  335 (451)
                      +-+.+++.+.+-.+. ++.-.     .-+|..++..++.    ....+.|.++++.+.+.  -|+...|...- +.+...
T Consensus       203 dR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~  280 (468)
T PF10300_consen  203 DRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLK  280 (468)
T ss_pred             cHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHh
Confidence            667777777765543 33322     2335556655554    45688999999999987  68887776553 445678


Q ss_pred             CCHHHHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCC---
Q 013010          336 NEIDKAIEMMRKMQNLNH--GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLV-CDALNAAEEP---  409 (451)
Q Consensus       336 g~~~~A~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l-i~~~~~~g~~---  409 (451)
                      |++++|++.|++......  .......+--+.-.+.-.+++++|.+.|..+.+..- -+..+|.-+ .-++...|+.   
T Consensus       281 g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~  359 (468)
T PF10300_consen  281 GNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEA  359 (468)
T ss_pred             cCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhh
Confidence            999999999997654221  123334455566678888999999999999997532 233344433 3344556666   


Q ss_pred             ----chHHHHHHHH
Q 013010          410 ----SLLDDGLRKR  419 (451)
Q Consensus       410 ----~~a~~~~~~~  419 (451)
                          ++|.+.+.+.
T Consensus       360 ~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  360 KEHKKEAEELFRKV  373 (468)
T ss_pred             hhhHHHHHHHHHHH
Confidence                4455555443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.26  E-value=0.98  Score=40.77  Aligned_cols=77  Identities=18%  Similarity=0.145  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHHHH
Q 013010          171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYT  245 (451)
Q Consensus       171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~~~  245 (451)
                      ++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|+..|+++.+     .|+.  |...+..
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~--P~~~~~~  231 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGID--PAPELRA  231 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCC--ccHHHHH
Confidence            45556666666666666666666665543 33556666666666666666666666655543     3433  5555555


Q ss_pred             HHHHH
Q 013010          246 ILISS  250 (451)
Q Consensus       246 ~li~~  250 (451)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            55554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.25  E-value=1.8  Score=42.31  Aligned_cols=156  Identities=12%  Similarity=0.115  Sum_probs=92.2

Q ss_pred             ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 013010          144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA  223 (451)
Q Consensus       144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  223 (451)
                      -.++++++.++...-   .+-|.....-.+.++.-+-+.|..+.|+++..+-..            -.....+.|+++.|
T Consensus       273 ~~~d~~~v~~~i~~~---~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A  337 (443)
T PF04053_consen  273 LRGDFEEVLRMIAAS---NLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIA  337 (443)
T ss_dssp             HTT-HHH-----HHH---HTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHH
T ss_pred             HcCChhhhhhhhhhh---hhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHH
Confidence            357777766665310   011111233477788888888888888877543221            23345667888888


Q ss_pred             HHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH
Q 013010          224 RFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI  303 (451)
Q Consensus       224 ~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~  303 (451)
                      .++.++.        ++...|..|.+...+.|           +++-|++.|.+...         |..|+-.|.-.|+.
T Consensus       338 ~~~a~~~--------~~~~~W~~Lg~~AL~~g-----------~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~  389 (443)
T PF04053_consen  338 LEIAKEL--------DDPEKWKQLGDEALRQG-----------NIELAEECYQKAKD---------FSGLLLLYSSTGDR  389 (443)
T ss_dssp             HHHCCCC--------STHHHHHHHHHHHHHTT-----------BHHHHHHHHHHCT----------HHHHHHHHHHCT-H
T ss_pred             HHHHHhc--------CcHHHHHHHHHHHHHcC-----------CHHHHHHHHHhhcC---------ccccHHHHHHhCCH
Confidence            6654322        46678888888888888           78888888776542         45677777778888


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010          304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM  348 (451)
Q Consensus       304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m  348 (451)
                      +...++.+.....|-      +|.-..++.-.|+++++.+++.+-
T Consensus       390 ~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  390 EKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             HHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            777777777766652      555555666677777777776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.21  E-value=6.8  Score=36.06  Aligned_cols=118  Identities=15%  Similarity=0.026  Sum_probs=53.1

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP-GFRCPPDVYTYTILISSYCKYGMQTGC  260 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~p~~~~~~~li~~~~~~g~~~~~  260 (451)
                      .|+..+|-..++++.+ ..+-|...++..=.+|.-.|+.+.....+++.... +-..|...+.-..+.-++...|     
T Consensus       116 ~g~~h~a~~~wdklL~-d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g-----  189 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLD-DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG-----  189 (491)
T ss_pred             cccccHHHHHHHHHHH-hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc-----
Confidence            3455555555555554 23445555555555555555555555555555433 1111111122222333344444     


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 013010          261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDD  312 (451)
Q Consensus       261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  312 (451)
                            -+++|++.-++..+.+ +.|.-.-.++...+--.|++.++.+...+
T Consensus       190 ------~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  190 ------IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             ------cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence                  4445555444444322 22334444444444455555555554433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.15  E-value=3.1  Score=40.71  Aligned_cols=156  Identities=16%  Similarity=0.120  Sum_probs=103.6

Q ss_pred             HHHHhcCCHHHHHHHHH--HHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010          177 KVLGEEGLVNEALATFY--RMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY  254 (451)
Q Consensus       177 ~~~~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~  254 (451)
                      ....-.++++++.++.+  ++.. .+  +....+.++.-+-+.|..+.|+++..+-.              .-.....+.
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------------~rFeLAl~l  331 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD--------------HRFELALQL  331 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------------HHHHHHHHC
T ss_pred             HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH--------------HHhHHHHhc
Confidence            44455788888777775  2221 12  25557888888888999999988754422              223455677


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV  334 (451)
Q Consensus       255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  334 (451)
                      |           +++.|.++.++.      .+...|..|-....+.|+++-|++.|....+         |..|+-.|.-
T Consensus       332 g-----------~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~  385 (443)
T PF04053_consen  332 G-----------NLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSS  385 (443)
T ss_dssp             T------------HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHH
T ss_pred             C-----------CHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHH
Confidence            7           788887765433      3677999999999999999999999987553         6677778888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010          335 VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA  382 (451)
Q Consensus       335 ~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~  382 (451)
                      .|+.++-.++.+.....|.       ++..+.++.-.|+.++..+++.
T Consensus       386 ~g~~~~L~kl~~~a~~~~~-------~n~af~~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  386 TGDREKLSKLAKIAEERGD-------INIAFQAALLLGDVEECVDLLI  426 (443)
T ss_dssp             CT-HHHHHHHHHHHHHTT--------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHccC-------HHHHHHHHHHcCCHHHHHHHHH
Confidence            9999888888888777662       5666666777788888877764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.98  E-value=2.5  Score=39.80  Aligned_cols=95  Identities=13%  Similarity=0.044  Sum_probs=56.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA  367 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  367 (451)
                      .+++.+.-+|.+.+++.+|++.-+.....+ ++|....-.=-.+|...|+++.|+..|+.+.+..  +-|...-+-|+..
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE--PSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence            445666667777777777777777766653 3355444444556677777777777777777754  3343334444444


Q ss_pred             HHHcCCHH-HHHHHHHHHH
Q 013010          368 LCEAGRVL-EARDFLAELV  385 (451)
Q Consensus       368 ~~~~g~~~-~A~~l~~~m~  385 (451)
                      --+..... ...++|..|.
T Consensus       335 ~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            33433333 3355666665

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.93  E-value=3  Score=35.18  Aligned_cols=100  Identities=7%  Similarity=-0.033  Sum_probs=72.1

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ...+..+...|++.|+.+.|.+.+.++.+....+..-...+-.+|+.....+++..+.....+....--.+.......=+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            34688899999999999999999999988766655556677788899999999999998887776532122212222112


Q ss_pred             HH-----HHhcCChHHHHHHHHHhh
Q 013010          212 NA-----LCRVGNFNKARFLLEQME  231 (451)
Q Consensus       212 ~~-----~~~~g~~~~a~~~~~~m~  231 (451)
                      .+     +...+++..|-+.|-+..
T Consensus       116 k~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  116 KVYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHccC
Confidence            21     234688999888887664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.29  E-value=0.72  Score=41.70  Aligned_cols=104  Identities=12%  Similarity=0.146  Sum_probs=78.7

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD  203 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  203 (451)
                      |.+.+..+...++..-....+++.+...+-++....   ..+.-+.++|-.++.    .-+.++++.++..=.+.|+-||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccccc
Confidence            566666777777777777788899988887776542   122223333333332    3477799999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010          204 VYAYNVVINALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      .++++.+|+.+.+.+++.+|.++...|....
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999988887654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=92.19  E-value=5.1  Score=32.07  Aligned_cols=44  Identities=7%  Similarity=0.163  Sum_probs=21.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010          173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV  217 (451)
Q Consensus       173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  217 (451)
                      ..++..+...+.......+++.+...+. .+...+|.++..|++.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~   54 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence            3444444444555555555555544442 3444455555555443

>PRK11906 transcriptional regulator; Provisional

Probab=92.03  E-value=12  Score=36.23  Aligned_cols=150  Identities=11%  Similarity=0.041  Sum_probs=98.4

Q ss_pred             CHHHHHHHHHHHhhcCCCCCCH-HhHHHHHHHHH---------ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH
Q 013010          111 GLNKATEFYHWVERFFDFFHNE-MTCKEMGIVFA---------RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG  180 (451)
Q Consensus       111 ~~~~A~~~f~~~~~~~~~~~~~-~~~~~ll~~~~---------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~  180 (451)
                      +.+.|+.+|+.........|+- ..|..+...+.         ......+|.++.+...+.+.   .|......+-.+..
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~---~Da~a~~~~g~~~~  349 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT---VDGKILAIMGLITG  349 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Confidence            4789999999988544555553 33333333222         12345667777777777763   36666677777777


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-CCCCCCHHHHHHHHHHHHhcCCch
Q 013010          181 EEGLVNEALATFYRMKQFRCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPG-FRCPPDVYTYTILISSYCKYGMQT  258 (451)
Q Consensus       181 ~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~p~~~~~~~li~~~~~~g~~~  258 (451)
                      -.++++.|..+|++....  .|| ..+|-..--.+.-+|+.++|...+++..+.. .+  .-.......++.|+..+   
T Consensus       350 ~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~--~~~~~~~~~~~~~~~~~---  422 (458)
T PRK11906        350 LSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR--RKAVVIKECVDMYVPNP---  422 (458)
T ss_pred             hhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh--hHHHHHHHHHHHHcCCc---
Confidence            888899999999999874  455 3444444444566899999999999955443 11  23344555666888774   


Q ss_pred             hhhHHHHHHHHHHHHHHHHHH
Q 013010          259 GCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       259 ~~~~~~~~~~~~a~~~~~~m~  279 (451)
                               ++.|.+++-+-.
T Consensus       423 ---------~~~~~~~~~~~~  434 (458)
T PRK11906        423 ---------LKNNIKLYYKET  434 (458)
T ss_pred             ---------hhhhHHHHhhcc
Confidence                     778888775433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=91.88  E-value=12  Score=35.60  Aligned_cols=82  Identities=12%  Similarity=0.053  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHHHhc---CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-H--HHHHHhcCCHHH
Q 013010          267 RIWEANHLFRLMLFK---GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS-F--IRYYSVVNEIDK  340 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~---~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-l--i~~~~~~g~~~~  340 (451)
                      ++..|.+.|.+....   +..++...|.....+..+.|+.++|+.--++..+.    |..-.-. +  -+++...+.|++
T Consensus       264 ~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~  339 (486)
T KOG0550|consen  264 NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEE  339 (486)
T ss_pred             chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666555432   23344444554455555566666665555544433    2211111 1  122333455666


Q ss_pred             HHHHHHHHHhcC
Q 013010          341 AIEMMRKMQNLN  352 (451)
Q Consensus       341 A~~~~~~m~~~~  352 (451)
                      |.+-++...+..
T Consensus       340 AV~d~~~a~q~~  351 (486)
T KOG0550|consen  340 AVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHhhc
Confidence            666665555443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=91.78  E-value=22  Score=38.53  Aligned_cols=76  Identities=13%  Similarity=0.208  Sum_probs=37.6

Q ss_pred             hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 013010          299 KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR  378 (451)
Q Consensus       299 ~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  378 (451)
                      ..+.+++|.-+|+..-+.         .--+.+|-.+|+|++|+.+-.++.....  --..+-..|+.-+...+++-+|.
T Consensus       951 ~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~d--e~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen  951 EELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKD--ELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred             HhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHH--HHHHHHHHHHHHHHHcccchhHH
Confidence            345555555555443221         1234556666666666666665543110  00111144555566666666666


Q ss_pred             HHHHHHH
Q 013010          379 DFLAELV  385 (451)
Q Consensus       379 ~l~~~m~  385 (451)
                      ++..+-.
T Consensus      1020 ~il~e~~ 1026 (1265)
T KOG1920|consen 1020 KILLEYL 1026 (1265)
T ss_pred             HHHHHHh
Confidence            6655544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.77  E-value=6.7  Score=32.53  Aligned_cols=138  Identities=15%  Similarity=0.119  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          271 ANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       271 a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      ..++++.+.+.+++|+...|..++..+.+.|++...    ..+...++-+|.......+-.+...  ...+.++--+|.+
T Consensus        13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~--~~~~~Ql~lDMLk   86 (167)
T PF07035_consen   13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQ--YPPAYQLGLDMLK   86 (167)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHcc--ChHHHHHHHHHHH
Confidence            456667777889999999999999999999986654    5555667777877776666444432  2334444444443


Q ss_pred             cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010          351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       351 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g  423 (451)
                      +=     ...+..+++.+...|++-+|.++.+.....    +......++++..+.++......+++-...++
T Consensus        87 RL-----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   87 RL-----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             Hh-----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            21     125667888899999999999998775322    11223557888888888887766666444443

>PRK11906 transcriptional regulator; Provisional

Probab=91.63  E-value=12  Score=36.28  Aligned_cols=172  Identities=9%  Similarity=-0.001  Sum_probs=105.0

Q ss_pred             HHH--HHHHHHHHhcC-----ChHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHH
Q 013010          205 YAY--NVVINALCRVG-----NFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR  276 (451)
Q Consensus       205 ~~~--~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~  276 (451)
                      ..|  ...+.+.....     ..+.|+.+|.+.....- ..|+ ...|..+..++...--. +-.. ......+|.++-+
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~-ldp~~a~a~~~lA~~h~~~~~~-g~~~-~~~~~~~a~~~A~  328 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSD-IQTLKTECYCLLAECHMSLALH-GKSE-LELAAQKALELLD  328 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhccc-CCcccHHHHHHHHHHHHHHHHh-cCCC-chHHHHHHHHHHH
Confidence            456  66666655422     25678889998882221 1243 44555554444332100 0000 1126677888888


Q ss_pred             HHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 013010          277 LMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV  355 (451)
Q Consensus       277 ~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  355 (451)
                      ...+.+ +-|......+-.+..-.++++.|...|++....  .|| ..+|-..-....-.|+.++|.+.+++..+.....
T Consensus       329 rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        329 YVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            777764 446666666666677788899999999998776  464 4555555555667899999999999977654322


Q ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010          356 PTSSSYTPIIHALCEAGRVLEARDFLAE  383 (451)
Q Consensus       356 p~~~~~~~li~~~~~~g~~~~A~~l~~~  383 (451)
                      --.......++.|+..+ +++|.++|-+
T Consensus       406 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~  432 (458)
T PRK11906        406 RKAVVIKECVDMYVPNP-LKNNIKLYYK  432 (458)
T ss_pred             hHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence            23334444455666554 6788887643

>PRK15331 chaperone protein SicA; Provisional

Probab=91.53  E-value=6.9  Score=32.22  Aligned_cols=89  Identities=10%  Similarity=-0.009  Sum_probs=66.6

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010          295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV  374 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~  374 (451)
                      .-+...|++++|..+|.-+..-+.- +..-|..|-.+|-..+++++|+..|...-....  -|+..+-..-.+|...|+.
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~--~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK--NDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--CCCCccchHHHHHHHhCCH
Confidence            3456789999999999987765322 455566777777788999999999988766553  3333344455678899999


Q ss_pred             HHHHHHHHHHHh
Q 013010          375 LEARDFLAELVD  386 (451)
Q Consensus       375 ~~A~~l~~~m~~  386 (451)
                      +.|...|...++
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988876

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=91.51  E-value=15  Score=35.97  Aligned_cols=76  Identities=17%  Similarity=0.151  Sum_probs=51.9

Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH
Q 013010          245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NR  322 (451)
Q Consensus       245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~  322 (451)
                      ..+..++-+.|           +.++|.+.|++|.+.. ..-+......|+.++...+.+.++..++.+-.+...+. -.
T Consensus       263 rRLAmCarklG-----------r~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAt  331 (539)
T PF04184_consen  263 RRLAMCARKLG-----------RLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSAT  331 (539)
T ss_pred             HHHHHHHHHhC-----------ChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHH
Confidence            44666667777           8899999999987542 11234466778999999999999999998875433221 24


Q ss_pred             HHHHHHHHH
Q 013010          323 VTYNSFIRY  331 (451)
Q Consensus       323 ~t~~~li~~  331 (451)
                      .+|+..+-.
T Consensus       332 i~YTaALLk  340 (539)
T PF04184_consen  332 ICYTAALLK  340 (539)
T ss_pred             HHHHHHHHH
Confidence            556654433

The molecular function of this protein is uncertain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.39  E-value=6.8  Score=40.49  Aligned_cols=213  Identities=15%  Similarity=0.129  Sum_probs=122.0

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHc--------------CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRR--------------GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR  199 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------------~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  199 (451)
                      ..+.++.+|...+++-.-.-++.++.+.              |............-|..+++...++-|..+-+.-.   
T Consensus       285 s~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~---  361 (933)
T KOG2114|consen  285 SSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQH---  361 (933)
T ss_pred             chhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhcC---
Confidence            4556666666666554433333333221              11112233345566777777777887777654432   


Q ss_pred             CCCCHHHHHHHH----HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010          200 CRPDVYAYNVVI----NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF  275 (451)
Q Consensus       200 ~~p~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~  275 (451)
                        .|..+...+.    +-+.+.|++++|...|-+-...   +.|..     +|.-|....           ++.+-..++
T Consensus       362 --~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~s~-----Vi~kfLdaq-----------~IknLt~YL  420 (933)
T KOG2114|consen  362 --LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEPSE-----VIKKFLDAQ-----------RIKNLTSYL  420 (933)
T ss_pred             --CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CChHH-----HHHHhcCHH-----------HHHHHHHHH
Confidence              2333333333    3445678899998888776532   22432     344554444           677777888


Q ss_pred             HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 013010          276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG  354 (451)
Q Consensus       276 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  354 (451)
                      +.+.+.|+. +...-..|+++|.+.++.+.-.+..+... .|.. .|.   ...+..+.+.+-.++|..+-.....+   
T Consensus       421 e~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~---e~al~Ilr~snyl~~a~~LA~k~~~h---  492 (933)
T KOG2114|consen  421 EALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDV---ETALEILRKSNYLDEAELLATKFKKH---  492 (933)
T ss_pred             HHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeH---HHHHHHHHHhChHHHHHHHHHHhccC---
Confidence            888887764 55556778899999998888777776554 3322 132   33455555666666666665544321   


Q ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          355 VPTSSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       355 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                         ......   .+-..|++++|.+++..|
T Consensus       493 ---e~vl~i---lle~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  493 ---EWVLDI---LLEDLHNYEEALRYISSL  516 (933)
T ss_pred             ---HHHHHH---HHHHhcCHHHHHHHHhcC
Confidence               122222   345567778887777654

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.39  E-value=0.84  Score=41.28  Aligned_cols=97  Identities=19%  Similarity=0.249  Sum_probs=48.6

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFR---CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT  245 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~  245 (451)
                      ..+...++..-....+++.+...+-.++..-   ..|+... .+++..|. .-+.++++.++..=..-|+-  ||-++++
T Consensus        64 ~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF--~dqf~~c  139 (418)
T KOG4570|consen   64 SLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIF--PDQFTFC  139 (418)
T ss_pred             eeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccc--cchhhHH
Confidence            3344445544444556666666665555421   1121111 12222222 22445666666665666644  6666666


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010          246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF  280 (451)
Q Consensus       246 ~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~  280 (451)
                      .+|+.+.+.+           ++.+|..+...|..
T Consensus       140 ~l~D~flk~~-----------n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  140 LLMDSFLKKE-----------NYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHHhcc-----------cHHHHHHHHHHHHH
Confidence            6666666666           55566655555543

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=91.12  E-value=6.9  Score=31.50  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=57.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC----CCCChhhHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010          325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNH----GVPTSSSYTPIIHALCEAGR-VLEARDFLAELVDGGSVPREYTYKLV  399 (451)
Q Consensus       325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l  399 (451)
                      .|+++...+..+++.....+++.+.....    +..+..+|.+++.+.++..- ---+..+|+-|.+.+.+++..-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            35555555555666666666555532211    13456678888888866655 33456677888777888888888888


Q ss_pred             HHHHHhcCCCchH
Q 013010          400 CDALNAAEEPSLL  412 (451)
Q Consensus       400 i~~~~~~g~~~~a  412 (451)
                      |.++.+.-..+..
T Consensus       122 i~~~l~g~~~~~~  134 (145)
T PF13762_consen  122 IKAALRGYFHDSL  134 (145)
T ss_pred             HHHHHcCCCCcch
Confidence            8888877555544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=90.94  E-value=2.9  Score=35.18  Aligned_cols=50  Identities=12%  Similarity=0.123  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      .+..+...|++.|+.+.|.+.|.++.+.......-...+-.+|+.....+
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~   87 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG   87 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC
Confidence            34455555555666666666665555543321112233444555555555

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK15331 chaperone protein SicA; Provisional

Probab=90.78  E-value=3.3  Score=34.03  Aligned_cols=92  Identities=11%  Similarity=-0.056  Sum_probs=68.0

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010          138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV  217 (451)
Q Consensus       138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  217 (451)
                      ...-+-..|++++|..+|.-+...+..   +..-|..|..++-..+++++|...|...-..+. -|...+--.-.+|...
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~---n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l  118 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFY---NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcC---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence            344455689999999999998886533   444466677777778999999999987765442 3444455556778889


Q ss_pred             CChHHHHHHHHHhhhC
Q 013010          218 GNFNKARFLLEQMELP  233 (451)
Q Consensus       218 g~~~~a~~~~~~m~~~  233 (451)
                      |+.+.|...|+.....
T Consensus       119 ~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        119 RKAAKARQCFELVNER  134 (165)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999999888764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.01  E-value=9.6  Score=39.46  Aligned_cols=168  Identities=16%  Similarity=0.096  Sum_probs=87.6

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ......-++.+.+...++-|..+...   .+.+++........-.+-+.+.|++++|...|-+-... ++|+     -+|
T Consensus       334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi  404 (933)
T KOG2114|consen  334 EKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI  404 (933)
T ss_pred             eccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence            34555566666777777777666433   22221111111222222233467777777766655431 2222     234


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHH--------HHHHHHHHHHHHH----
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRR--------RIWEANHLFRLML----  279 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~--------~~~~a~~~~~~m~----  279 (451)
                      .-|..+.++..--.+++.+.+.|..   +...-+.|+.+|.+.++.++..+.+++        +++.|.+++.+..    
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla---~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLA---NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccc---cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHH
Confidence            4455555566666677777777763   555566677777777766666655542        3455555443221    


Q ss_pred             ----hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010          280 ----FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMN  314 (451)
Q Consensus       280 ----~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  314 (451)
                          .....-.....+.   .+-..+++++|.+.++.|.
T Consensus       482 a~~LA~k~~~he~vl~i---lle~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  482 AELLATKFKKHEWVLDI---LLEDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHHHhccCHHHHHH---HHHHhcCHHHHHHHHhcCC
Confidence                0011112222222   2345677888888887654

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=89.96  E-value=13  Score=32.91  Aligned_cols=57  Identities=12%  Similarity=0.109  Sum_probs=33.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          293 LIDGCCKTYRIERALELFDDMNKKGCIPN---RVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      +..-|.+.|.+..|..-+++|.+. .+-+   ....-.+..+|...|..++|...-.-+..
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            345566777777777777777665 2212   23344455666667766666665554443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.86  E-value=22  Score=36.10  Aligned_cols=185  Identities=14%  Similarity=0.022  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHHHHHHHh-------cCCCCCHhhH
Q 013010          220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY--GMQTGCRKAIRRRIWEANHLFRLMLF-------KGFVPDVVAY  290 (451)
Q Consensus       220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~--g~~~~~~~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~  290 (451)
                      ...|.++++...+.|.     ...-..+..+|..-  |..        ++.+.|...|....+       .|   +....
T Consensus       228 ~~~a~~~~~~~a~~g~-----~~a~~~~g~~y~~G~~g~~--------~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~  291 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGH-----SEAQYALGICYLAGTYGVT--------QDLESAIEYLKLAAESFKKAATKG---LPPAQ  291 (552)
T ss_pred             hhHHHHHHHHHHhhcc-----hHHHHHHHHHHhhcccccc--------ccHHHHHHHHHHHHHHHHHHHhhc---CCccc
Confidence            4578889998888873     33333333333222  211        278888888887766       44   33455


Q ss_pred             HHHHHHHHhcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          291 NCLIDGCCKTY-----RIERALELFDDMNKKGCIPNRVTYNSFIRYYSV-VNEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       291 ~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      +-+-.+|.+..     +.+.|..++....+.|. |+...+-..+..... ..+...|.++|...-+.|.  +....+-.+
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~A~~~la~  368 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--ILAIYRLAL  368 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hHHHHHHHH
Confidence            66666666643     56779999999888874 455554444333333 3567899999999999885  333333333


Q ss_pred             HHHHH--HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchH
Q 013010          365 IHALC--EAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIE  425 (451)
Q Consensus       365 i~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~  425 (451)
                      +....  -..+...|..++++..+.| .|...--...+..+.. +..+.+.-.+..+...|.+
T Consensus       369 ~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~  429 (552)
T KOG1550|consen  369 CYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE  429 (552)
T ss_pred             HHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence            32222  2347889999999999988 3432222233344444 7777666666666655554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=89.85  E-value=8.5  Score=30.88  Aligned_cols=75  Identities=12%  Similarity=0.134  Sum_probs=52.9

Q ss_pred             HHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 013010          297 CCKTYRIERALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG  372 (451)
Q Consensus       297 ~~~~g~~~~a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g  372 (451)
                      ..+.|++++|.+.|+.+...-  -+-....--.|+.+|.+.+++++|...+++..+.+...|+ .-|...+.+++.-.
T Consensus        20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~   96 (142)
T PF13512_consen   20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYE   96 (142)
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHH
Confidence            456788999999998887651  1114456667888888999999999999988887654443 45666666655543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=89.61  E-value=19  Score=34.24  Aligned_cols=189  Identities=13%  Similarity=0.068  Sum_probs=113.5

Q ss_pred             CCHHHHHHHHH-HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010          202 PDVYAYNVVIN-ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF  280 (451)
Q Consensus       202 p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~  280 (451)
                      |...+|..+-. ++.-.|+.++|.++-....+..     .+..+...+++.+---.         .+.+.|...|++-+.
T Consensus       166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-----~~n~~al~vrg~~~yy~---------~~~~ka~~hf~qal~  231 (486)
T KOG0550|consen  166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-----ATNAEALYVRGLCLYYN---------DNADKAINHFQQALR  231 (486)
T ss_pred             chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-----cchhHHHHhcccccccc---------cchHHHHHHHhhhhc
Confidence            44455554433 3456788888888877666554     22344444444332210         055566666665543


Q ss_pred             cCCCCCHhhHHH-------------HHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          281 KGFVPDVVAYNC-------------LIDGCCKTYRIERALELFDDMNKK---GCIPNRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       281 ~~~~~~~~~~~~-------------li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                      .  -|+...-..             =-+-..+.|++..|.+.|.+....   ++.|+...|...-....+.|+.++|+.-
T Consensus       232 l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisd  309 (486)
T KOG0550|consen  232 L--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISD  309 (486)
T ss_pred             c--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhh
Confidence            3  233222111             112346789999999999997754   4566777788888888899999999999


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHH--HHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCc
Q 013010          345 MRKMQNLNHGVPTSSSYTPIIHA--LCEAGRVLEARDFLAELVDGGSVP-REYTYKLVCDALNAAEEPS  410 (451)
Q Consensus       345 ~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~  410 (451)
                      .++..+...    ......+.++  +...+++++|.+-|+...+..-.+ ...++.-...++-++.+-+
T Consensus       310 c~~Al~iD~----syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd  374 (486)
T KOG0550|consen  310 CNEALKIDS----SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKD  374 (486)
T ss_pred             hhhhhhcCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhh
Confidence            998876541    2233333333  444578999999888776543322 3455555555665555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=89.60  E-value=16  Score=33.33  Aligned_cols=229  Identities=11%  Similarity=0.030  Sum_probs=132.0

Q ss_pred             hhcCHHHHHHHHHHHhhcC-CCCCCH------HhHHHHHHHHHccCChhHHHHHHHHHHHc----C----CCCC---ccH
Q 013010          108 VTLGLNKATEFYHWVERFF-DFFHNE------MTCKEMGIVFARGNNVKGLWDFLKDMSRR----G----NGEL---VTT  169 (451)
Q Consensus       108 ~~~~~~~A~~~f~~~~~~~-~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~m~~~----~----~~~~---~~~  169 (451)
                      ..|+.+.|.-++.++.... ...|+.      ..|+.-...+.+..+++.|...+++..+.    +    ..+.   .-.
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            4577889999999887653 334442      24444444444333888888887655443    1    1111   123


Q ss_pred             HhHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010          170 SSVTCLIKVLGEEGLVN---EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI  246 (451)
Q Consensus       170 ~~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~  246 (451)
                      .++..++.+|...+..+   +|..+++.+.... .-...++-.-+..+.+.++.+++.+.+.+|...-.   -....+..
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~---~~e~~~~~  160 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD---HSESNFDS  160 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc---cccchHHH
Confidence            56777888888877655   5666777775532 22355665667777778999999999999998742   23455665


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh-hHHHH-HH-HHH--hcC------CHHHHHHHHHHHHh
Q 013010          247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV-AYNCL-ID-GCC--KTY------RIERALELFDDMNK  315 (451)
Q Consensus       247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~l-i~-~~~--~~g------~~~~a~~~~~~m~~  315 (451)
                      ++..+-...+.         ....|...++.+....+.|... ....+ +. .+.  +.+      +++...++++...+
T Consensus       161 ~l~~i~~l~~~---------~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~  231 (278)
T PF08631_consen  161 ILHHIKQLAEK---------SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH  231 (278)
T ss_pred             HHHHHHHHHhh---------CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH
Confidence            56555332211         3346667776666555555543 22111 11 111  111      14455555654433


Q ss_pred             -CCCCCCHHHHHHHHH-------HHHhcCCHHHHHHHHHHHH
Q 013010          316 -KGCIPNRVTYNSFIR-------YYSVVNEIDKAIEMMRKMQ  349 (451)
Q Consensus       316 -~g~~p~~~t~~~li~-------~~~~~g~~~~A~~~~~~m~  349 (451)
                       .+.+.+..+-.++..       .+.+.++++.|.+.|+-..
T Consensus       232 ~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  232 SLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence             233445555444333       2456789999999987543

It is also involved in sporulation [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=89.47  E-value=8.5  Score=30.28  Aligned_cols=90  Identities=11%  Similarity=-0.033  Sum_probs=53.4

Q ss_pred             hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHH
Q 013010          108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVN  186 (451)
Q Consensus       108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~  186 (451)
                      ..++++.|++.|......  .+-....||.-..++.-.|+.++|++=+++..+...+... -...|..--..|-..|+.+
T Consensus        55 E~g~Ld~AlE~F~qal~l--~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCL--APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             hccchHHHHHHHHHHHHh--cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            356677777777776632  3445667777777777777777777777666654322111 1122323333455567777


Q ss_pred             HHHHHHHHHhhCC
Q 013010          187 EALATFYRMKQFR  199 (451)
Q Consensus       187 ~A~~~~~~m~~~g  199 (451)
                      .|..=|+...+.|
T Consensus       133 ~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  133 AARADFEAAAQLG  145 (175)
T ss_pred             HHHHhHHHHHHhC
Confidence            7777776666555

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.40  E-value=21  Score=34.43  Aligned_cols=260  Identities=11%  Similarity=0.105  Sum_probs=148.8

Q ss_pred             HHccCChhHHHHHHHHHHHcCCCC--Ccc-HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHh
Q 013010          142 FARGNNVKGLWDFLKDMSRRGNGE--LVT-TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA--LCR  216 (451)
Q Consensus       142 ~~~~g~~~~a~~~~~~m~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~  216 (451)
                      +-+.+++.+|.++|.++.+..-..  ... ...-+.+|++|.. .+.+.....+.++.+.  .| ...|-.+..+  +.+
T Consensus        16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK   91 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence            457889999999999987764221  111 2233556677764 5666666666666653  23 2333333333  457


Q ss_pred             cCChHHHHHHHHHhhhC--CCCCCC-----------CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-
Q 013010          217 VGNFNKARFLLEQMELP--GFRCPP-----------DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-  282 (451)
Q Consensus       217 ~g~~~~a~~~~~~m~~~--g~~~~p-----------~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-  282 (451)
                      .+++++|.+.+......  +.. +|           |-.-=+..++++...|           ++.++..+++++...= 
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~-~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-----------~f~EgR~iLn~i~~~ll  159 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTE-SPWLDTNIQQLFSDFFLDEIEAHSLIETG-----------RFSEGRAILNRIIERLL  159 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccc-cchhhhhHHHHhhHHHHHHHHHHHHHhcC-----------CcchHHHHHHHHHHHHh
Confidence            88899999988877655  322 12           2222356778888899           8888888888776543 


Q ss_pred             ---CCCCHhhHHHHHHHHHhcCCH---------------HHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhc--C
Q 013010          283 ---FVPDVVAYNCLIDGCCKTYRI---------------ERALELFDDMNKK------GCIPNRVTYNSFIRYYSVV--N  336 (451)
Q Consensus       283 ---~~~~~~~~~~li~~~~~~g~~---------------~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~--g  336 (451)
                         ...+..+||-++-.+.++--.               +-+.-..++|...      .+.|-...+..++....-.  .
T Consensus       160 krE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e  239 (549)
T PF07079_consen  160 KRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKE  239 (549)
T ss_pred             hhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHh
Confidence               447899999877666554211               1122222233221      3445555555555554432  2


Q ss_pred             CHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCch
Q 013010          337 EIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGGSVPR----EYTYKLVCDALNAAEEPSL  411 (451)
Q Consensus       337 ~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~  411 (451)
                      +..--.+++........ .|+-. ....|+..+..  +.+++..+.+.+....+.+=    ..++..++....+.++...
T Consensus       240 ~l~~~mq~l~~We~~yv-~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~  316 (549)
T PF07079_consen  240 RLPPLMQILENWENFYV-HPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE  316 (549)
T ss_pred             hccHHHHHHHHHHhhcc-CCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence            22223344444444443 44432 33344444444  55666666555554332221    3478888888888888888


Q ss_pred             HHHHHHHHH
Q 013010          412 LDDGLRKRI  420 (451)
Q Consensus       412 a~~~~~~~~  420 (451)
                      |.+.+.-..
T Consensus       317 a~q~l~lL~  325 (549)
T PF07079_consen  317 AKQYLALLK  325 (549)
T ss_pred             HHHHHHHHH
Confidence            877776554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.20  E-value=6.5  Score=37.12  Aligned_cols=100  Identities=16%  Similarity=0.085  Sum_probs=76.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC-----CC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhh
Q 013010          295 DGCCKTYRIERALELFDDMNKK-----GC---------IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSS  360 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~-----g~---------~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~  360 (451)
                      +.|.+.|++..|..-|+.....     +.         ..-..+++.|.-+|.+.+++.+|++..+.....+  ++|...
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~--~~N~KA  293 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD--PNNVKA  293 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC--CCchhH
Confidence            4567778888887777664431     11         1224557778889999999999999999999887  678877


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010          361 YTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL  398 (451)
Q Consensus       361 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  398 (451)
                      .-.=-.+|...|+++.|...|+.+.+  +.|+...-+.
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~  329 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARA  329 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHH
Confidence            77777889999999999999999987  5576554443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=88.90  E-value=1.7  Score=26.79  Aligned_cols=24  Identities=21%  Similarity=0.392  Sum_probs=10.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          327 SFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       327 ~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      .+-..|...|++++|.++|++..+
T Consensus         6 ~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    6 ALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333444444444444444444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=88.76  E-value=1.6  Score=26.82  Aligned_cols=28  Identities=7%  Similarity=-0.012  Sum_probs=15.5

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcC
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRG  162 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~  162 (451)
                      +..+..+|.+.|++++|.+++++..+..
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~   31 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALD   31 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4445555555555555555555555553

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.64  E-value=32  Score=35.44  Aligned_cols=284  Identities=10%  Similarity=0.041  Sum_probs=158.3

Q ss_pred             CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN---VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       111 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      .+..|+.+-.++....+.  +...|.....-+.+..+   -+-+..+-+++... .   ....+|..+.+-...+|+.+.
T Consensus       452 ~Y~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~---~~~iSy~~iA~~Ay~~GR~~L  525 (829)
T KOG2280|consen  452 LYSVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L---TPGISYAAIARRAYQEGRFEL  525 (829)
T ss_pred             hhHHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C---CCceeHHHHHHHHHhcCcHHH
Confidence            356777777776532111  14555556665655432   22233333333222 1   233468888888888999999


Q ss_pred             HHHHHHHHhhCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC---------CCCCHHHHHHHHHHHHhc
Q 013010          188 ALATFYRMKQFRC----RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFR---------CPPDVYTYTILISSYCKY  254 (451)
Q Consensus       188 A~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---------~~p~~~~~~~li~~~~~~  254 (451)
                      |..+++.=...+-    -.+..-+...+.-+...|+.+....++-.+...-..         .|-....|.-    +++.
T Consensus       526 A~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~----~~r~  601 (829)
T KOG2280|consen  526 ARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ----FMRH  601 (829)
T ss_pred             HHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH----HHHh
Confidence            9988764333221    123344566677778888888777777666543210         0111122222    2221


Q ss_pred             CCchhhhHHHH-HHHHHHHHHH--HHHH----hcCCCCCHhhHHHHHHHHHhcCCHH----------HHHHHHHHHH-hC
Q 013010          255 GMQTGCRKAIR-RRIWEANHLF--RLML----FKGFVPDVVAYNCLIDGCCKTYRIE----------RALELFDDMN-KK  316 (451)
Q Consensus       255 g~~~~~~~~~~-~~~~~a~~~~--~~m~----~~~~~~~~~~~~~li~~~~~~g~~~----------~a~~~~~~m~-~~  316 (451)
                      .+........+ .+-.++...|  +...    ..|..|+   ....-++|.+.....          +-..+.+.+. +.
T Consensus       602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~  678 (829)
T KOG2280|consen  602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQF  678 (829)
T ss_pred             hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            11110000000 0111111111  1100    1122232   233444455443311          1122333333 23


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 013010          317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTY  396 (451)
Q Consensus       317 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~  396 (451)
                      |......+.+--+..+...|+-.+|.++-.+.+     .||...|-.=+.+++..+++++-+++-+.+..      +.-|
T Consensus       679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy  747 (829)
T KOG2280|consen  679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGY  747 (829)
T ss_pred             ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCc
Confidence            555666677778888889999999998876653     79999999999999999999998888766542      3457


Q ss_pred             HHHHHHHHhcCCCchHHHHHHH
Q 013010          397 KLVCDALNAAEEPSLLDDGLRK  418 (451)
Q Consensus       397 ~~li~~~~~~g~~~~a~~~~~~  418 (451)
                      ..+..+|.+.|+.++|.+.+-+
T Consensus       748 ~PFVe~c~~~~n~~EA~KYipr  769 (829)
T KOG2280|consen  748 LPFVEACLKQGNKDEAKKYIPR  769 (829)
T ss_pred             hhHHHHHHhcccHHHHhhhhhc
Confidence            7789999999999988777653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=88.35  E-value=1.1  Score=26.18  Aligned_cols=23  Identities=13%  Similarity=0.277  Sum_probs=11.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 013010          172 VTCLIKVLGEEGLVNEALATFYR  194 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~  194 (451)
                      |+.|-..|.+.|++++|+++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44445555555555555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=88.29  E-value=1.2  Score=26.03  Aligned_cols=26  Identities=8%  Similarity=0.153  Sum_probs=16.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          360 SYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       360 ~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      +|..|-..|.+.|++++|.++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35566677777777777777777643

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.18  E-value=15  Score=30.13  Aligned_cols=61  Identities=16%  Similarity=0.215  Sum_probs=41.2

Q ss_pred             hhHHHHHHHH---HhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          288 VAYNCLIDGC---CKTYRIERALELFDDMNKKGCIPNR---VTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       288 ~~~~~li~~~---~~~g~~~~a~~~~~~m~~~g~~p~~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      .+.+.||..+   .+.++.+++..++..+.-.  .|..   .++...  -+...|++.+|+.+|+++....
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccC
Confidence            3444444433   4678888999998888765  4543   344433  3568899999999999987654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=87.13  E-value=48  Score=36.15  Aligned_cols=109  Identities=18%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010          293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY----SVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL  368 (451)
Q Consensus       293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~----~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  368 (451)
                      .++.--+.|-+.+|..++        .|+...+..+..+|    ...+.+++|.-+|+..-+.          .-.+.+|
T Consensus       914 ~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl----------ekAl~a~  975 (1265)
T KOG1920|consen  914 CKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL----------EKALKAY  975 (1265)
T ss_pred             HHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH----------HHHHHHH
Confidence            333333444455554444        46666655555444    4557777777777654221          2346778


Q ss_pred             HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          369 CEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       369 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      ..+|++.+|+.+..+|....-. -..+-..|+.-+...|+.-+|.+++.+..
T Consensus       976 ~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen  976 KECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred             HHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence            8888888888887766421100 01122456666777777766766666554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=87.12  E-value=5.4  Score=29.41  Aligned_cols=63  Identities=16%  Similarity=0.129  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS  249 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~  249 (451)
                      +.-++.+-++.+...++.|+.....+.+.+|-+.+++..|.++|+-.+...   ..+...|..++.
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~---~~~~~~y~~~lq   84 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC---GAHKEIYPYILQ   84 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---cCchhhHHHHHH
Confidence            455677777777777888888888888888888888888888888777442   134445655554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=86.52  E-value=35  Score=33.59  Aligned_cols=173  Identities=12%  Similarity=-0.008  Sum_probs=116.4

Q ss_pred             CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010          239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC  318 (451)
Q Consensus       239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  318 (451)
                      .|.....+++..+...-           ...-.+.+-.+|..-|  -+...|-.++.+|... .-+.-..+++.+.+..+
T Consensus        64 l~d~~l~~~~~~f~~n~-----------k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df  129 (711)
T COG1747          64 LDDSCLVTLLTIFGDNH-----------KNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF  129 (711)
T ss_pred             ccchHHHHHHHHhccch-----------HHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc
Confidence            45556677788887776           7777778888888765  3667888899999888 55777888888887743


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCH
Q 013010          319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV----PTSSSYTPIIHALCEAGRVLEARDFLAELVD-GGSVPRE  393 (451)
Q Consensus       319 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~~  393 (451)
                        |...+..-+..+...++.+++...|.+....-+..    .-...|.-|+...  ..+.+....+...... .|..--.
T Consensus       130 --nDvv~~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~  205 (711)
T COG1747         130 --NDVVIGRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGS  205 (711)
T ss_pred             --hhHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHH
Confidence              44455555555555588888888888877654310    0112455444321  3456777777766653 3555566


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHH
Q 013010          394 YTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFR  429 (451)
Q Consensus       394 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~  429 (451)
                      ..+.-+-.-|....+++++.+++....+..-...|.
T Consensus       206 Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~a  241 (711)
T COG1747         206 VLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWA  241 (711)
T ss_pred             HHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhH
Confidence            777777788888888888888888666544443333

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.37  E-value=26  Score=31.90  Aligned_cols=50  Identities=18%  Similarity=0.122  Sum_probs=20.8

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010          180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM  230 (451)
Q Consensus       180 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  230 (451)
                      ...|+..+|...|....+.. +-+...--.+..+|...|+.+.|..++..+
T Consensus       145 ~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         145 IEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             hhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            33444444444444444322 112233333444444444444444444443

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=85.86  E-value=4.6  Score=30.13  Aligned_cols=63  Identities=16%  Similarity=0.117  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      .-+..+-++.+...++.|+.....+.+.+|-|.+++..|.++|+-.+..-.   +....|..++.-
T Consensus        26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~---~~~~~Y~~~lqE   88 (108)
T PF02284_consen   26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG---NKKEIYPYILQE   88 (108)
T ss_dssp             HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT---T-TTHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc---ChHHHHHHHHHH
Confidence            336677777777788888999999999999999999999999888876532   233366666553

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.79  E-value=7.7  Score=28.65  Aligned_cols=41  Identities=12%  Similarity=0.257  Sum_probs=17.6

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010          309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQ  349 (451)
Q Consensus       309 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~  349 (451)
                      -++.+....+.|++....+-+++|.+.+++..|.++|+-.+
T Consensus        29 ~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          29 GLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33333333444444444444444444444444444444433

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=85.51  E-value=28  Score=31.63  Aligned_cols=149  Identities=15%  Similarity=0.038  Sum_probs=99.0

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010          138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV  217 (451)
Q Consensus       138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  217 (451)
                      -.......|++.+|..+|.........   +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qa  216 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQA  216 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHH
Confidence            334556789999999999998887533   34456788899999999999999999987643222222223345556666


Q ss_pred             CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCCHhhHHHHHHH
Q 013010          218 GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPDVVAYNCLIDG  296 (451)
Q Consensus       218 g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~li~~  296 (451)
                      ....+...+-.+....    |-|...-..+...+...|           +.++|.+.+-.+..+.. --|...-..++..
T Consensus       217 a~~~~~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g-----------~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~  281 (304)
T COG3118         217 AATPEIQDLQRRLAAD----PDDVEAALALADQLHLVG-----------RNEAALEHLLALLRRDRGFEDGEARKTLLEL  281 (304)
T ss_pred             hcCCCHHHHHHHHHhC----CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcccccCcHHHHHHHHH
Confidence            6666555555555543    137777777888888888           78888877766654321 2234455566666


Q ss_pred             HHhcCCHH
Q 013010          297 CCKTYRIE  304 (451)
Q Consensus       297 ~~~~g~~~  304 (451)
                      +.--|..+
T Consensus       282 f~~~g~~D  289 (304)
T COG3118         282 FEAFGPAD  289 (304)
T ss_pred             HHhcCCCC
Confidence            66555433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.19  E-value=32  Score=31.92  Aligned_cols=155  Identities=12%  Similarity=0.040  Sum_probs=95.2

Q ss_pred             HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH---
Q 013010          215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN---  291 (451)
Q Consensus       215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---  291 (451)
                      ...|++.+|-..++++.+.   .|.|..++.-.=++|.-.|           +...-...+++.... -.+|...|.   
T Consensus       114 ~~~g~~h~a~~~wdklL~d---~PtDlla~kfsh~a~fy~G-----------~~~~~k~ai~kIip~-wn~dlp~~sYv~  178 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD---YPTDLLAVKFSHDAHFYNG-----------NQIGKKNAIEKIIPK-WNADLPCYSYVH  178 (491)
T ss_pred             hccccccHHHHHHHHHHHh---CchhhhhhhhhhhHHHhcc-----------chhhhhhHHHHhccc-cCCCCcHHHHHH
Confidence            3456677777777777765   3568788887788888888           566666666665532 234443332   


Q ss_pred             -HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCChhhHHHHHHHH
Q 013010          292 -CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG--VPTSSSYTPIIHAL  368 (451)
Q Consensus       292 -~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--~p~~~~~~~li~~~  368 (451)
                       ...-++...|-+++|++.-++..+.+ +.|.-.-.++...+-..|+..++.++..+-...-..  ..-.+-|-...-.+
T Consensus       179 GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~  257 (491)
T KOG2610|consen  179 GMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFH  257 (491)
T ss_pred             HHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhh
Confidence             23334457788888888877766653 235555566666677788888888887664432210  11112232222334


Q ss_pred             HHcCCHHHHHHHHHHHH
Q 013010          369 CEAGRVLEARDFLAELV  385 (451)
Q Consensus       369 ~~~g~~~~A~~l~~~m~  385 (451)
                      ...+.++.|+++|+.=+
T Consensus       258 iE~aeye~aleIyD~ei  274 (491)
T KOG2610|consen  258 IEGAEYEKALEIYDREI  274 (491)
T ss_pred             hcccchhHHHHHHHHHH
Confidence            45578888999887544

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=84.85  E-value=28  Score=30.97  Aligned_cols=188  Identities=13%  Similarity=0.050  Sum_probs=107.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010          177 KVLGEEGLVNEALATFYRMKQFR--CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY  254 (451)
Q Consensus       177 ~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~  254 (451)
                      ..-.+.|++++|.+.|+.+..+-  -+-...+--.++-++.+.+++++|....++....--. .|| .-|..-|.+++..
T Consensus        42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~-~~n-~dY~~YlkgLs~~  119 (254)
T COG4105          42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT-HPN-ADYAYYLKGLSYF  119 (254)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC-CCC-hhHHHHHHHHHHh
Confidence            33456788889988888887642  1223455566677788889999999888887765422 233 3455555555543


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV  334 (451)
Q Consensus       255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  334 (451)
                      -..+...+    +...+...+..+.+            +|.-|=.+.-..+|...+..+...    =..-=-.+.+.|.+
T Consensus       120 ~~i~~~~r----Dq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~IaryY~k  179 (254)
T COG4105         120 FQIDDVTR----DQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIARYYLK  179 (254)
T ss_pred             ccCCcccc----CHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            32222211    33344444433332            222222222223333333322211    00001235567889


Q ss_pred             cCCHHHHHHHHHHHHhcCCC-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          335 VNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       335 ~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      .|.+-.|..-+++|.+..-. .-....+-.+..+|...|-.++|.+.-.-+..
T Consensus       180 r~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         180 RGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             hcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            99999999999999886421 12233566677888888988888877655543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.74  E-value=22  Score=29.65  Aligned_cols=136  Identities=11%  Similarity=0.050  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010          203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG  282 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~  282 (451)
                      +...|...++ +.+.++.++|+.-|.++.+.|..--|.. .---+.......|           +...|...|++.-...
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvL-A~mr~at~~a~kg-----------dta~AV~aFdeia~dt  124 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVL-ARMRAATLLAQKG-----------DTAAAVAAFDEIAADT  124 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHH-HHHHHHHHHhhcc-----------cHHHHHHHHHHHhccC
Confidence            3344444443 3455666677777777766665411111 1111122233334           5566666666665443


Q ss_pred             CCCCHh-hHHHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010          283 FVPDVV-AYNCLID--GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       283 ~~~~~~-~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                      -.|-.. -..-|=.  .+...|.+++.....+-+-..|-+.-...-..|--+-.+.|++.+|...|..+...
T Consensus       125 ~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         125 SIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             CCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            333221 1111111  23455666666666665554443333344445555556667777777777666553

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=84.64  E-value=22  Score=29.55  Aligned_cols=130  Identities=16%  Similarity=0.131  Sum_probs=59.6

Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 013010          190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW  269 (451)
Q Consensus       190 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~  269 (451)
                      +....+.+.|++|+...|..+++.+.+.|++.....+    ...++-  +|.......+-.+......         -.+
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi--~DSk~lA~~LLs~~~~~~~---------~~Q   79 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVI--PDSKPLACQLLSLGNQYPP---------AYQ   79 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----Hhhccc--CCcHHHHHHHHHhHccChH---------HHH
Confidence            3445555566667777777777777777665443333    333332  3333333333222221100         122


Q ss_pred             HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       270 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      -|++.+.++.        ..+..++..+...|++-+|.+..+.....    +......++.+-.+.++...=..+++
T Consensus        80 l~lDMLkRL~--------~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~  144 (167)
T PF07035_consen   80 LGLDMLKRLG--------TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR  144 (167)
T ss_pred             HHHHHHHHhh--------hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence            3333333332        12344556666666666666666554222    11112334455555555444333333

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.70  E-value=2.8  Score=25.02  Aligned_cols=25  Identities=20%  Similarity=0.246  Sum_probs=11.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010          171 SVTCLIKVLGEEGLVNEALATFYRM  195 (451)
Q Consensus       171 ~~~~li~~~~~~g~~~~A~~~~~~m  195 (451)
                      +++.|...|...|++++|..++++.
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHH
Confidence            3444444455555555555544444

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=83.19  E-value=59  Score=33.40  Aligned_cols=287  Identities=13%  Similarity=0.077  Sum_probs=133.7

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      -|.+++|..+|-.+.++ .         ..+..+.+.|++-.+.++++.=-. +.....-...|+.+-..+.....+++|
T Consensus       747 ~g~feeaek~yld~drr-D---------LAielr~klgDwfrV~qL~r~g~~-d~dD~~~e~A~r~ig~~fa~~~~We~A  815 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRR-D---------LAIELRKKLGDWFRVYQLIRNGGS-DDDDEGKEDAFRNIGETFAEMMEWEEA  815 (1189)
T ss_pred             hcchhHhhhhhhccchh-h---------hhHHHHHhhhhHHHHHHHHHccCC-CcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888887777543 1         245556666777766666543110 111111234566666666666666666


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC------CCHHHHHHHHHHHHhcCCchhhhH
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP------PDVYTYTILISSYCKYGMQTGCRK  262 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------p~~~~~~~li~~~~~~g~~~~~~~  262 (451)
                      .+.|..-...         ...+.++.+..++++.+.+...+.+..--.|      ..+-...-.+.+|.+.+.+..|..
T Consensus       816 ~~yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~  886 (1189)
T KOG2041|consen  816 AKYYSYCGDT---------ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVH  886 (1189)
T ss_pred             HHHHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHH
Confidence            6666543220         1123334433334333333332221110000      011122223333333333322221


Q ss_pred             HHH--HHHHHHHHHHHHHHhcCC-----------CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHH--
Q 013010          263 AIR--RRIWEANHLFRLMLFKGF-----------VPDVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPNRV--  323 (451)
Q Consensus       263 ~~~--~~~~~a~~~~~~m~~~~~-----------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~--  323 (451)
                      .-.  +++.+|.++-+...-..+           -.+..+.. -|..+.+.|+.-+|-+++.+|.+.    +.+|-..  
T Consensus       887 tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~e-aIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~Kk  965 (1189)
T KOG2041|consen  887 TCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHME-AIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKK  965 (1189)
T ss_pred             HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHH-HHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHH
Confidence            100  156666655543321000           00111111 234456677777777777777543    3333221  


Q ss_pred             --HHHH-HHHHHH----------hcCCHHHHHHHHHHHHhcC--------CCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010          324 --TYNS-FIRYYS----------VVNEIDKAIEMMRKMQNLN--------HGVPTSSSYTPIIHALCEAGRVLEARDFLA  382 (451)
Q Consensus       324 --t~~~-li~~~~----------~~g~~~~A~~~~~~m~~~~--------~~~p~~~~~~~li~~~~~~g~~~~A~~l~~  382 (451)
                        ...+ |+.-+.          +.|..++|..+++.-.-..        ..-....+|-+|..--...|.++.|.+.--
T Consensus       966 lYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal 1045 (1189)
T KOG2041|consen  966 LYVLGALLVENHRQTIKELRKIDKHGFLEDATDLLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTAL 1045 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhhhhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHh
Confidence              1111 122221          2355566665444322110        001223444455555566789999988766


Q ss_pred             HHHhC-CCCCCHHHHHHHHHHHHhcCCCchHHHHH
Q 013010          383 ELVDG-GSVPREYTYKLVCDALNAAEEPSLLDDGL  416 (451)
Q Consensus       383 ~m~~~-g~~p~~~t~~~li~~~~~~g~~~~a~~~~  416 (451)
                      .+.+. .+-|....|+.|.-+-|....+..-.+.+
T Consensus      1046 ~L~DYEd~lpP~eiySllALaaca~raFGtCSKAf 1080 (1189)
T KOG2041|consen 1046 ILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAF 1080 (1189)
T ss_pred             hhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHH
Confidence            66543 57788889998877777666555443333

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.01  E-value=13  Score=31.80  Aligned_cols=78  Identities=8%  Similarity=0.020  Sum_probs=52.5

Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCCCCHHHHHHHHHHHHhcCC
Q 013010          143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF---RCRPDVYAYNVVINALCRVGN  219 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~  219 (451)
                      .+.|+ +.|.+.|-.+...+.-  -++.....|..-| ...+.+++..++....+.   +-.+|+..+..|.+.+.+.|+
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l--~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPEL--ETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCC--CCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            44455 4577777777666532  2444444444444 467888888888777652   336788889999999999988


Q ss_pred             hHHHH
Q 013010          220 FNKAR  224 (451)
Q Consensus       220 ~~~a~  224 (451)
                      ++.|-
T Consensus       194 ~e~AY  198 (203)
T PF11207_consen  194 YEQAY  198 (203)
T ss_pred             hhhhh
Confidence            88774

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.85  E-value=3.6  Score=24.48  Aligned_cols=27  Identities=30%  Similarity=0.374  Sum_probs=17.9

Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      .+++.|...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            456667777777777777777776655

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=81.63  E-value=20  Score=26.87  Aligned_cols=59  Identities=12%  Similarity=0.192  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010          305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII  365 (451)
Q Consensus       305 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  365 (451)
                      +..+-++.+....+.|++....+-+.+|.+.+++..|.++|+-.+.+..  +....|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHH
Confidence            4444555555556666666666666666666666666666666655442  2222555444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=81.52  E-value=42  Score=30.54  Aligned_cols=139  Identities=10%  Similarity=0.081  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHh-cCCCCCHhhHHHHHHHHHh-cC-CHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010          267 RIWEANHLFRLMLF-KGFVPDVVAYNCLIDGCCK-TY-RIERALELFDDMNK-KGCIPNRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       267 ~~~~a~~~~~~m~~-~~~~~~~~~~~~li~~~~~-~g-~~~~a~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~A~  342 (451)
                      .+.+|+++|+.... ..+--|..+...+++.... .+ ....-.++.+-+.. .|..++..+...+|..+++.+++++-.
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            55677777773322 3355577777777777765 22 33344455555443 356778888889999999999999999


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHHh
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE-----LVDGGSVPREYTYKLVCDALNA  405 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~t~~~li~~~~~  405 (451)
                      ++|+.-.......-|..-|..+|+.....|+..-..++.++     ++..|+..+...-..|-+.+.+
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK  290 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence            99988776533367888899999999999998777666543     2345666666655555544443

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=81.28  E-value=67  Score=32.73  Aligned_cols=187  Identities=14%  Similarity=0.075  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHH-HHccCChhHHHHHHHHHHH-------cCCCCCccHHhHHHHHHHHHhc
Q 013010          111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIV-FARGNNVKGLWDFLKDMSR-------RGNGELVTTSSVTCLIKVLGEE  182 (451)
Q Consensus       111 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~m~~-------~~~~~~~~~~~~~~li~~~~~~  182 (451)
                      +...|.++|+...+.....+-...=.....+ ++...+.+.|..++....+       .+..     ...+-+-.+|.+.
T Consensus       227 ~~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~-----~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLP-----PAQYGLGRLYLQG  301 (552)
T ss_pred             hhhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCC-----ccccHHHHHHhcC
Confidence            3567888888877652111111111111222 4466799999999998877       4422     2355666667664


Q ss_pred             C-----CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh-cC
Q 013010          183 G-----LVNEALATFYRMKQFRCRPDVYAYNVVINALCR-VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-YG  255 (451)
Q Consensus       183 g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~-~g  255 (451)
                      .     +.+.|..+|....+.|. |+....-..+..... ..+...|.++|......|.   +. ..|. +..+|.. .|
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~-A~~~-la~~y~~G~g  375 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---IL-AIYR-LALCYELGLG  375 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hH-HHHH-HHHHHHhCCC
Confidence            3     67889999999988774 455544443333332 2467899999999999984   22 2222 2222222 22


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010          256 MQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGC  318 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  318 (451)
                      .        ..+...|..++...-+.|........ ..+..+.. ++.+.+.-.+..+.+.|.
T Consensus       376 v--------~r~~~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  376 V--------ERNLELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             c--------CCCHHHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            1        12778899999988888722222222 22333333 777777777777766654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=80.63  E-value=51  Score=30.99  Aligned_cols=65  Identities=17%  Similarity=0.116  Sum_probs=30.9

Q ss_pred             HHHHcCCHHHHHHHHHHHH----hCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHH--HhchHHHHHHh
Q 013010          367 ALCEAGRVLEARDFLAELV----DGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRI--RDGIEYRFRQV  431 (451)
Q Consensus       367 ~~~~~g~~~~A~~l~~~m~----~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~--~~g~~~~~~~~  431 (451)
                      ++...|.+..|.+.-++..    ..|-++. ......+.+.|...|+.+.+...+++.+  -.++-.++.++
T Consensus       215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv  286 (518)
T KOG1941|consen  215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQV  286 (518)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHH
Confidence            4445555555555544432    2332221 2233445555666666666655555554  24444444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.28  E-value=4.6  Score=22.85  Aligned_cols=26  Identities=23%  Similarity=0.089  Sum_probs=11.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010          172 VTCLIKVLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~m~~  197 (451)
                      |..+..+|...|++++|+..|++..+
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            44444444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.12  E-value=14  Score=32.02  Aligned_cols=78  Identities=15%  Similarity=0.156  Sum_probs=50.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCChhhHHHHHHH
Q 013010          289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPTSSSYTPIIHA  367 (451)
Q Consensus       289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~~~~~li~~  367 (451)
                      |.+..++.+.+.+.+.+|+...++-.+.+ +.|..+-..+++.||-.|++++|..-++-.-+.... .+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            44556777778888888888877766652 225566677788888888888887766654443210 3445566666543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=80.12  E-value=32  Score=28.29  Aligned_cols=89  Identities=10%  Similarity=-0.022  Sum_probs=56.0

Q ss_pred             HHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCCh
Q 013010          141 VFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNF  220 (451)
Q Consensus       141 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  220 (451)
                      .-.+.++.+++..++..+.-.... .+...++...+  +...|++.+|..+|+++.+.+  |.......|+..|....+-
T Consensus        19 ~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGD   93 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCC
Confidence            345678999999999988776432 23334444443  678899999999999987753  4444555555555544433


Q ss_pred             HHHHHHHHHhhhCC
Q 013010          221 NKARFLLEQMELPG  234 (451)
Q Consensus       221 ~~a~~~~~~m~~~g  234 (451)
                      ..=...-+++.+.+
T Consensus        94 ~~Wr~~A~evle~~  107 (160)
T PF09613_consen   94 PSWRRYADEVLESG  107 (160)
T ss_pred             hHHHHHHHHHHhcC
Confidence            33333345566555

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	451
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-14
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 75.6 bits (184), Expect = 1e-14
 Identities = 25/199 (12%), Positives = 57/199 (28%), Gaps = 15/199 (7%)

Query: 158 MSRRGNGELVTTSSVTCLIKVLGEEGLVNEA---LATFYRMKQFRCRPDVYAYNVVINAL 214
                         +    K       +  A   L   +  +Q R    +  YN V+   
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175

Query: 215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL 274
            R G F +  ++L  ++  G    PD+ +Y   +    +          I R        
Sbjct: 176 ARQGAFKELVYVLFMVKDAG--LTPDLLSYAAALQCMGRQDQDA---GTIER-------C 223

Query: 275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV 334
              M  +G     +    L+    +   ++   ++    +    +P  V  +  +R    
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283

Query: 335 VNEIDKAIEMMRKMQNLNH 353
            +      ++   ++ L  
Sbjct: 284 KDGRVSYPKLHLPLKTLQC 302

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 70.2 bits (170), Expect = 6e-13
 Identities = 18/226 (7%), Positives = 50/226 (22%), Gaps = 47/226 (20%)

Query: 185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTY 244
           ++   A   +  Q +                       A  LL                 
Sbjct: 108 LDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLV---------------- 151

Query: 245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIE 304
                                        +      K  +  +  YN ++ G  +    +
Sbjct: 152 -----------------------------VHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182

Query: 305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE-MMRKMQNLNHGVPTSSSYTP 363
             + +   +   G  P+ ++Y + ++     ++    IE  + +M         +     
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG-LKLQALFTAV 241

Query: 364 IIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP 409
           ++     A  +               +P       +   + A +  
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGR 287

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 59.9 bits (144), Expect = 1e-09
 Identities = 71/480 (14%), Positives = 134/480 (27%), Gaps = 158/480 (32%)

Query: 10  KHTCLVQQVLPLMLKNV--PFDAKLAASTTKTQNPFTIESVADVLKSIP-----RFFFQS 62
           ++    + +L +        FD K      K  +  + E +  ++ S          F +
Sbjct: 15  QYQY--KDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIMSKDAVSGTLRLFWT 70

Query: 63  PRSIGRQT-------------GF---RHRTPLRQRILKKEAYNIANNVLVLGPAAYRDPQ 106
             S   +               F     +T  RQ  +    Y    + L      Y D Q
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL------YNDNQ 124

Query: 107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL 166
                  K    Y+ V R            +             L   L ++    N   
Sbjct: 125 VFA----K----YN-VSR-----------LQP---------YLKLRQALLELRPAKN--- 152

Query: 167 VTTSSVTCLIKVLGEEG-----LVNEALATFYRMKQFRCRPDVYAYNVV-INALCRVGNF 220
                    + + G  G     +  +         + +C+ D   + +  +N    + N 
Sbjct: 153 ---------VLIDGVLGSGKTWVALDVC----LSYKVQCKMD---FKIFWLN----LKNC 192

Query: 221 NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI-WEANHLFRLML 279
           N    +LE ++               +  ++      +     I+ RI      L RL+ 
Sbjct: 193 NSPETVLEMLQK----------LLYQIDPNWTSRSDHS---SNIKLRIHSIQAELRRLLK 239

Query: 280 FKGFVPDVVAYNCLI--------------DGCCKTYRIERALELFDDMNKKGCIPNRVTY 325
            K +       NCL+              +  CK     R  ++ D ++         T+
Sbjct: 240 SKPYE------NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS-----AATTTH 288

Query: 326 NSFIRYYSVVNEIDKAIEMMRK-----MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDF 380
            S   +   +   D+   ++ K      Q+L   V T++   P   ++      +  RD 
Sbjct: 289 ISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTN---PRRLSII--AESI--RDG 340

Query: 381 LAELVDGGSVPREYTYKLVCDALNAAEEPSL--LD-DGLRKRIRD-GIEYRFRQVMKVKP 436
           LA          +    + CD L    E SL  L+    RK      +   F     +  
Sbjct: 341 LATW--------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV---FPPSAHIPT 389

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 8e-05
 Identities = 45/325 (13%), Positives = 87/325 (26%), Gaps = 103/325 (31%)

Query: 120 HWVERFFDFFHNEM--TCKEMGIV----FARGNNVKGLWDFLKDMSRRGNGELVTTSSVT 173
           H      DF   E     K++  V    F    + K + D  K         +++   + 
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPK--------SILSKEEID 52

Query: 174 CLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP 233
               ++  +  V+       R+                  L         +F+ E +   
Sbjct: 53  ---HIIMSKDAVSGT----LRL---------------FWTLLSKQEEMVQKFVEEVLR-- 88

Query: 234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAI----RRRIWEANHLFRLMLFKGFVPDVVA 289
                 +   Y  L+S       Q      +    R R++  N +F     K  V  +  
Sbjct: 89  -----IN---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA----KYNVSRLQP 136

Query: 290 YNCLID-----------------GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY 332
           Y  L                   G  KT+    AL++      +  +  ++       ++
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWV---ALDVCLSYKVQCKMDFKI-------FW 186

Query: 333 SVVNEIDKAIEMMRKMQNLNH-----GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG 387
             +   +    ++  +Q L +         S   + I   +      L  R  L      
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL--RRLLKS---- 240

Query: 388 GSVPREYTYKL-----VCDA--LNA 405
               + Y   L     V +A   NA
Sbjct: 241 ----KPYENCLLVLLNVQNAKAWNA 261

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	451
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.95
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.85
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.78
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.75
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.73
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.71
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.71
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.7
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.69
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.69
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.68
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.65
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.64
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.59
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.57
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.56
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.54
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.53
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.53
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.51
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.5
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.5
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.48
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.48
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.47
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.46
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.43
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.42
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.41
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.4
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.36
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.35
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.34
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.34
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.34
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.34
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.33
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.33
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.31
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.28
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.25
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.21
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.2
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.2
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.17
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.16
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.13
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.11
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.11
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.1
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.06
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.98
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.97
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.94
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.91
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.9
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.89
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.88
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.87
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.87
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.81
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.77
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.75
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.71
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.71
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.63
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.62
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.62
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.62
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.61
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.61
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.6
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.6
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.58
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.58
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.56
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.56
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.53
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.5
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.49
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.49
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.45
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.44
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.44
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.43
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.42
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.38
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.36
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.35
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.34
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.33
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.33
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.33
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.31
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.31
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.29
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.27
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.26
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.25
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.25
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.25
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.25
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.22
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.22
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.2
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.2
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.18
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.18
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.15
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.13
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.11
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.1
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.05
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.02
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.02
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.02
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.02
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.02
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.01
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.0
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.0
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.99
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.98
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.98
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.96
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.95
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.95
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.95
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.94
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.94
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.91
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.9
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.89
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.88
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.86
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.86
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.83
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.83
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.82
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.81
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.81
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.68
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.68
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.68
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.62
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.59
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.58
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.58
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.58
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.58
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.53
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.53
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.46
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.41
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.4
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.36
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.28
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.2
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.19
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.16
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.13
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.07
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.02
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.99
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.95
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	96.92
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.88
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.82
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.69
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.67
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.34
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.94
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	95.73
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.43
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.63
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.54
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.53
1pc2_A	152	Mitochondria fission protein; unknown function; NM	94.47
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.42
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	94.35
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.32
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.08
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.58
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.37
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.37
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	93.07
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	91.3
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.22
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	90.8
3eiq_C	358	Programmed cell death protein 4; PDCD4, anti-oncog	90.57
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	90.49
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	90.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.81
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.07
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.5
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	88.13
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.88
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	86.02
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	85.72
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	84.97
2zu6_B	307	Programmed cell death protein 4; protein-protein c	83.73
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	83.42
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	83.19
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	82.03
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	81.93
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	80.8
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.4

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=4.3e-34  Score=281.30  Aligned_cols=215  Identities=14%  Similarity=0.162  Sum_probs=174.1

Q ss_pred             HHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010          187 EALATFYRMKQFRCRPDV-YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR  265 (451)
Q Consensus       187 ~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~  265 (451)
                      .+..+.+++.+.+..+.. ..++.+|++|++.|++++|+++|++|.+.|+.  ||..|||+||.+|++.+.......  .
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~--pd~~tyn~Li~~c~~~~~~~~~~~--~   83 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQ--LSQYHYNVLLYVCSLAEAATESSP--N   83 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHTTCCCCSSSSC--C
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHhCCchhhhhh--c
Confidence            344455566665554443 34666777777777777777777777777754  777777777777776654322111  1


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010          266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMM  345 (451)
Q Consensus       266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~  345 (451)
                      +.++.|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~  163 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD  163 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence            16889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010          346 RKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA  406 (451)
Q Consensus       346 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  406 (451)
                      ++|.+.|. .||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       164 ~~M~~~G~-~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          164 AHMVESEV-VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHTTC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHhcCC-CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999998 9999999999999999999999999999999999999999999999999875

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=6.4e-34  Score=280.05  Aligned_cols=208  Identities=14%  Similarity=0.180  Sum_probs=164.7

Q ss_pred             hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC---------
Q 013010          149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN---------  219 (451)
Q Consensus       149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------  219 (451)
                      ..+..+.+.+.+++....| ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+.         
T Consensus         7 s~~e~L~~~~~~k~~~~sp-e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~   85 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSP-EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG   85 (501)
T ss_dssp             -----------------CH-HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred             chHHHHHHHHHHhcccCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence            3455666667666655433 335788888888888888888888888888888888889888888887654         


Q ss_pred             hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 013010          220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK  299 (451)
Q Consensus       220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  299 (451)
                      ++.|.++|++|...|+.  ||..||++||.+|++.|           ++++|.++|++|.+.|+.||..|||++|.+|++
T Consensus        86 l~~A~~lf~~M~~~G~~--Pd~~tyn~lI~~~~~~g-----------~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~  152 (501)
T 4g26_A           86 LSRGFDIFKQMIVDKVV--PNEATFTNGARLAVAKD-----------DPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR  152 (501)
T ss_dssp             HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC--CCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence            57788889999888864  89999999999999888           888888899999888888999999999999999


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 013010          300 TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA  371 (451)
Q Consensus       300 ~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  371 (451)
                      .|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|++.+. .|+..||+.++..|+..
T Consensus       153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~-~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVR-QVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS-SBCHHHHHHHHHHHHSH
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCC-CcCHHHHHHHHHHHhcC
Confidence            999999999999998888999999999999999999999999999999988887 88888998888888764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.95  E-value=5.1e-25  Score=223.44  Aligned_cols=297  Identities=10%  Similarity=-0.043  Sum_probs=265.9

Q ss_pred             CCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010          102 YRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE  181 (451)
Q Consensus       102 ~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~  181 (451)
                      .+..+...+++++|.++|+.+.+.   +++..+++.++.+|.+.|++++|.++|+++.+.+..   +..+++.++.+|.+
T Consensus       278 ~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~  351 (597)
T 2xpi_A          278 KLNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY---NLDVYPLHLASLHE  351 (597)
T ss_dssp             TSCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CCTTHHHHHHHHHH
T ss_pred             HHHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHH
Confidence            356677888999999999998753   689999999999999999999999999999987632   56679999999999


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR  261 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~  261 (451)
                      .|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..   +.+..+|+.++.+|.+.|      
T Consensus       352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g------  421 (597)
T 2xpi_A          352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---PQFGPAWIGFAHSFAIEG------  421 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT------
T ss_pred             hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC------
Confidence            999999999999998643 4578999999999999999999999999998764   357889999999999999      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010          262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A  341 (451)
                           ++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.+...|.+.|++++|
T Consensus       422 -----~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  494 (597)
T 2xpi_A          422 -----EHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTA  494 (597)
T ss_dssp             -----CHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             -----CHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHH
Confidence                 9999999999998763 4578899999999999999999999999998764 34789999999999999999999


Q ss_pred             HHHHHHHHhc----CCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHH
Q 013010          342 IEMMRKMQNL----NHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG  415 (451)
Q Consensus       342 ~~~~~~m~~~----~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~  415 (451)
                      .++|+++.+.    +. .|+  ..+|..+..+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|++++|.+.
T Consensus       495 ~~~~~~~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~  572 (597)
T 2xpi_A          495 INHFQNALLLVKKTQS-NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITH  572 (597)
T ss_dssp             HHHHHHHHHHHHHSCC-CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhhhcccc-chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            9999999876    44 576  7899999999999999999999999998765 34789999999999999999999999


Q ss_pred             HHHHHHhc
Q 013010          416 LRKRIRDG  423 (451)
Q Consensus       416 ~~~~~~~g  423 (451)
                      ++++++..
T Consensus       573 ~~~~l~~~  580 (597)
T 2xpi_A          573 LHESLAIS  580 (597)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99998654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.94  E-value=2.3e-24  Score=218.61  Aligned_cols=301  Identities=12%  Similarity=0.011  Sum_probs=227.0

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcC--------------CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC----
Q 013010          104 DPQKVTLGLNKATEFYHWVERFF--------------DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE----  165 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~--------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~----  165 (451)
                      ..+...|++++|+++|+.+....              +.+++..+|+.++.+|.+.|++++|.++|++|.+.+...    
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  237 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF  237 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            44666778888888888432221              224457899999999999999999999999998765221    


Q ss_pred             ----------------------------------------------------------------CccHHhHHHHHHHHHh
Q 013010          166 ----------------------------------------------------------------LVTTSSVTCLIKVLGE  181 (451)
Q Consensus       166 ----------------------------------------------------------------~~~~~~~~~li~~~~~  181 (451)
                                                                                      +.+..+|+.++.+|.+
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV  317 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence                                                                            1234455555555555


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR  261 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~  261 (451)
                      .|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|..+|+++....   +.+..+|+.++..|.+.|      
T Consensus       318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g------  387 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH---PEKAVTWLAVGIYYLCVN------  387 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTSHHHHHHHHHHHHHTT------
T ss_pred             hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHhc------
Confidence            555555555555555433 2244555555555555555555555555555432   346667777777777777      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010          262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A  341 (451)
                           ++++|.++|+++.+.. +.+..+|+.++.+|++.|++++|.++|+++.+.+ +.+..+|+.+..+|.+.|++++|
T Consensus       388 -----~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  460 (597)
T 2xpi_A          388 -----KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLA  460 (597)
T ss_dssp             -----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             -----cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHH
Confidence                 8889999999888642 3357789999999999999999999999988764 34788999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCCchHHHH
Q 013010          342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG----GSVPR--EYTYKLVCDALNAAEEPSLLDDG  415 (451)
Q Consensus       342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~a~~~  415 (451)
                      .++|+++.+..  +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+.|++++|.+.
T Consensus       461 ~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~  538 (597)
T 2xpi_A          461 NEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDA  538 (597)
T ss_dssp             HHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            99999998876  567889999999999999999999999999865    77887  78999999999999999999999


Q ss_pred             HHHHHHhc
Q 013010          416 LRKRIRDG  423 (451)
Q Consensus       416 ~~~~~~~g  423 (451)
                      ++++++.+
T Consensus       539 ~~~~~~~~  546 (597)
T 2xpi_A          539 LNQGLLLS  546 (597)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhC
Confidence            99988654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=1.3e-19  Score=173.52  Aligned_cols=294  Identities=13%  Similarity=0.006  Sum_probs=249.3

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      ..+...|++++|++.|+.+.+.  .+.+...|..+..++.+.|++++|.+.++++.+.+..   +...+..+...+...|
T Consensus        75 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g  149 (388)
T 1w3b_A           75 NVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD---LYCVRSDLGNLLKALG  149 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT---CTHHHHHHHHHHHTTS
T ss_pred             HHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcc
Confidence            4466778899999999998754  2335567888999999999999999999998887532   4556778888888999


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKA  263 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~  263 (451)
                      ++++|.+.|+++.+.. +-+..+|+.+...+...|++++|...|+++....   |.+...|..+...+...|        
T Consensus       150 ~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~--------  217 (388)
T 1w3b_A          150 RLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEAR--------  217 (388)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTT--------
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCcHHHHHHHHHHHHHcC--------
Confidence            9999999999988753 3357889999999999999999999999998765   346788888999999998        


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 013010          264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIE  343 (451)
Q Consensus       264 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~  343 (451)
                         ++++|...|++..+.. +-+..++..+..++...|++++|.+.|+++.+.+ +.+..+|..+...|.+.|++++|.+
T Consensus       218 ---~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~  292 (388)
T 1w3b_A          218 ---IFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAED  292 (388)
T ss_dssp             ---CTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             ---CHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence               7888888888887652 2357889999999999999999999999998863 2257889999999999999999999


Q ss_pred             HHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          344 MMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       344 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      .|+++.+..  +.+..++..+...+.+.|++++|.++++++.+.. +.+..++..+..++.+.|++++|.+.++++++.
T Consensus       293 ~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          293 CYNTALRLC--PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHhhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            999999876  6788999999999999999999999999998752 345788999999999999999999999998853

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.86  E-value=7.6e-19  Score=168.24  Aligned_cols=291  Identities=16%  Similarity=0.112  Sum_probs=247.1

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV  185 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~  185 (451)
                      +...++.++|..+++...+.  .+.+...|..+...+.+.|++++|...|+++.+...   .+..+|..+..++.+.|++
T Consensus        43 ~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g~~  117 (388)
T 1w3b_A           43 HFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP---DFIDGYINLAAALVAAGDM  117 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHSCS
T ss_pred             HHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc---chHHHHHHHHHHHHHcCCH
Confidence            44567789999999888764  456778899999999999999999999999988752   2556789999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010          186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR  265 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~  265 (451)
                      ++|.+.|+++.+.. +-+...+..+...+...|++++|.+.|+++....   |.+..+|..+...|.+.|          
T Consensus       118 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~g----------  183 (388)
T 1w3b_A          118 EGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ---PNFAVAWSNLGCVFNAQG----------  183 (388)
T ss_dssp             SHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTT----------
T ss_pred             HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC----------
Confidence            99999999998753 2245667777788888999999999999998764   346788999999999999          


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                       ++++|...|+++.+.. +.+...|..+...+...|++++|...+++..+.  .| +..++..+...|...|++++|.+.
T Consensus       184 -~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~  259 (388)
T 1w3b_A          184 -EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDT  259 (388)
T ss_dssp             -CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence             8899999999988753 335677888889999999999999999988775  34 578899999999999999999999


Q ss_pred             HHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          345 MRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       345 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      |+++.+..  +.+..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|.+.++++++.
T Consensus       260 ~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  334 (388)
T 1w3b_A          260 YRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV  334 (388)
T ss_dssp             HHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            99999875  4567789999999999999999999999998763 457889999999999999999999999988753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.85  E-value=2.3e-18  Score=168.04  Aligned_cols=293  Identities=13%  Similarity=0.013  Sum_probs=245.9

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL  184 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~  184 (451)
                      .+...+++++|+.+|+.+.+.  .+.+...+..+..++...|++++|...|+.+.+.+..   +..++..+..+|.+.|+
T Consensus        35 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           35 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD---FTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTC
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC---cHHHHHHHHHHHHHcCC
Confidence            356678899999999999864  4557889999999999999999999999999998633   56789999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCH----HHHHHHH------------HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          185 VNEALATFYRMKQFRCRPDV----YAYNVVI------------NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~----~~~~~li------------~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      +++|.+.|+++.+.  .|+.    ..+..+.            ..+...|++++|...|+++....   +.+..++..+.
T Consensus       110 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~  184 (450)
T 2y4t_A          110 LDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC---VWDAELRELRA  184 (450)
T ss_dssp             HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCChHHHHHHH
Confidence            99999999999985  3543    5565554            44889999999999999998765   45889999999


Q ss_pred             HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 013010          249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNS  327 (451)
Q Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~  327 (451)
                      .+|.+.|           ++++|...|+++.+.. +.+..++..+..+|...|++++|.+.|+++.+.  .| +...+..
T Consensus       185 ~~~~~~g-----------~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~  250 (450)
T 2y4t_A          185 ECFIKEG-----------EPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAH  250 (450)
T ss_dssp             HHHHHTT-----------CGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHCC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHH
Confidence            9999999           7788888888887642 446789999999999999999999999999865  34 3445544


Q ss_pred             H------------HHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010          328 F------------IRYYSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE  393 (451)
Q Consensus       328 l------------i~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  393 (451)
                      +            ...|...|++++|...|+++.+.....|.  ...|..+...+.+.|++++|.+.++++.+.. +.+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~  329 (450)
T 2y4t_A          251 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV  329 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence            4            78899999999999999999986521111  4478889999999999999999999988753 3367


Q ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          394 YTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       394 ~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      ..|..+..+|...|+++.|.+.+++.++.
T Consensus       330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          330 NALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            89999999999999999999999999853

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=5.6e-21  Score=193.73  Aligned_cols=120  Identities=10%  Similarity=0.091  Sum_probs=88.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhh---CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010          203 DVYAYNVVINALCRVGNFNKARFLLEQMEL---PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~  279 (451)
                      -..|||++|++||+.|++++|.++|++|.+   .|.  .||++|||+||++||+.|           ++++|.++|++|.
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~--~PdvvTYNtLI~Glck~G-----------~~~eA~~Lf~eM~  192 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRK--LLTLDMYNAVMLGWARQG-----------AFKELVYVLFMVK  192 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHT--TCCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCC--CCCHhHHHHHHHHHHhCC-----------CHHHHHHHHHHHH
Confidence            456777777777777777777777766543   353  377777777777777777           7777777777777


Q ss_pred             hcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010          280 FKGFVPDVVAYNCLIDGCCKTYR-IERALELFDDMNKKGCIPNRVTYNSFIRYYSVV  335 (451)
Q Consensus       280 ~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~  335 (451)
                      +.|+.||..|||++|.++|+.|+ .++|.++|++|.+.|+.||..||++++.++.+.
T Consensus       193 ~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~  249 (1134)
T 3spa_A          193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA  249 (1134)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred             HcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence            77777777777777777777776 366777777777777777777777777655443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=1.8e-20  Score=190.12  Aligned_cols=152  Identities=11%  Similarity=0.054  Sum_probs=131.6

Q ss_pred             CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh---cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF---KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK  315 (451)
Q Consensus       239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  315 (451)
                      --..|||+||++||+.|           ++++|.++|.+|.+   .|+.||+.|||+||.+||+.|++++|.++|++|.+
T Consensus       125 ~~~~TynaLIdglcK~G-----------~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~  193 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTD-----------QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD  193 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            45579999999999999           99999999988764   58999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--
Q 013010          316 KGCIPNRVTYNSFIRYYSVVNE-IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR--  392 (451)
Q Consensus       316 ~g~~p~~~t~~~li~~~~~~g~-~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--  392 (451)
                      .|+.||..|||+||.++++.|+ .++|.++|++|.+.|+ .||..+|+.++.++.+.    .+++..+++ .-++.|+  
T Consensus       194 ~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~-~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~  267 (1134)
T 3spa_A          194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL-KLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQ  267 (1134)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTC-CSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCC
T ss_pred             cCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC-CCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCC
Confidence            9999999999999999999998 5889999999999999 99999999999877775    444444444 4456655  


Q ss_pred             ----HHHHHHHHHHHHhcC
Q 013010          393 ----EYTYKLVCDALNAAE  407 (451)
Q Consensus       393 ----~~t~~~li~~~~~~g  407 (451)
                          ..|...|.+.|.+.+
T Consensus       268 ~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          268 LPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             CCCCCCCCTTTHHHHCCCS
T ss_pred             CcccccchHHHHHHHccCC
Confidence                556667777777666

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.82  E-value=2.5e-17  Score=160.66  Aligned_cols=271  Identities=13%  Similarity=0.083  Sum_probs=229.5

Q ss_pred             CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 013010          128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY  207 (451)
Q Consensus       128 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  207 (451)
                      -+.+...+..+...+.+.|++++|..+|+.+.+...   .+..+|..+..+|...|++++|...|+++.+.+ +.+..++
T Consensus        22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~   97 (450)
T 2y4t_A           22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP---DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAAR   97 (450)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence            345677899999999999999999999999998752   367789999999999999999999999998864 3468899


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH---HHHHHHHHH------------HHhcCCchhhhHHHHHHHHHHH
Q 013010          208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDV---YTYTILISS------------YCKYGMQTGCRKAIRRRIWEAN  272 (451)
Q Consensus       208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~---~~~~~li~~------------~~~~g~~~~~~~~~~~~~~~a~  272 (451)
                      ..+..+|.+.|++++|...|+++....   +.+.   .++..+...            +.+.|           ++++|.
T Consensus        98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~~~~A~  163 (450)
T 2y4t_A           98 LQRGHLLLKQGKLDEAEDDFKKVLKSN---PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG-----------DYTAAI  163 (450)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------CHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC---CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CHHHHH
Confidence            999999999999999999999999865   2344   566666444            77777           899999


Q ss_pred             HHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          273 HLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       273 ~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      ..|+++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+..
T Consensus       164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999998753 4477889999999999999999999999988763 3468999999999999999999999999999865


Q ss_pred             CCCCChhhHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCCCchHHHH
Q 013010          353 HGVPTSSSYTPI------------IHALCEAGRVLEARDFLAELVDGGSVPR-----EYTYKLVCDALNAAEEPSLLDDG  415 (451)
Q Consensus       353 ~~~p~~~~~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~li~~~~~~g~~~~a~~~  415 (451)
                        +.+...+..+            ...|.+.|++++|.++|+++.+.  .|+     ...|..+..++.+.|+++.|.+.
T Consensus       242 --p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  317 (450)
T 2y4t_A          242 --QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRV  317 (450)
T ss_dssp             --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred             --CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence              3445555555            78899999999999999999874  354     45788999999999999999999


Q ss_pred             HHHHHHh
Q 013010          416 LRKRIRD  422 (451)
Q Consensus       416 ~~~~~~~  422 (451)
                      +.+.++.
T Consensus       318 ~~~a~~~  324 (450)
T 2y4t_A          318 CSEVLQM  324 (450)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998854

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.78  E-value=1.4e-15  Score=143.08  Aligned_cols=293  Identities=12%  Similarity=-0.009  Sum_probs=242.8

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL  184 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~  184 (451)
                      .+...+++++|+..|+.+.+.  .+.+...+..+...+...|++++|...++...+....   +...+..+...+...|+
T Consensus        12 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~   86 (359)
T 3ieg_A           12 KLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD---FTAARLQRGHLLLKQGK   86 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---cchHHHHHHHHHHHcCC
Confidence            355678899999999999864  3456788999999999999999999999999987532   56789999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCC----CHHHHHHH------------HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          185 VNEALATFYRMKQFRCRP----DVYAYNVV------------INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      +++|...|++..+.  .|    +...+..+            ...+...|++++|..+++++....   +.+..++..+.
T Consensus        87 ~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~  161 (359)
T 3ieg_A           87 LDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC---VWDAELRELRA  161 (359)
T ss_dssp             HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCchHHHHHHH
Confidence            99999999999885  35    44445444            578889999999999999998775   35788999999


Q ss_pred             HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 013010          249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS-  327 (451)
Q Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~-  327 (451)
                      ..+...|           ++++|...+++..+.. +.+..++..+...+...|++++|.+.++...+.. +.+..++.. 
T Consensus       162 ~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~  228 (359)
T 3ieg_A          162 ECFIKEG-----------EPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHY  228 (359)
T ss_dssp             HHHHHTT-----------CHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHCC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHH
Confidence            9999999           9999999999998753 4567889999999999999999999999988763 223443332 


Q ss_pred             -----------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh----hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010          328 -----------FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS----SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR  392 (451)
Q Consensus       328 -----------li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  392 (451)
                                 +...+.+.|++++|...+++..+...  .+.    ..+..+...+...|++++|.+.+++..+.. +.+
T Consensus       229 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~  305 (359)
T 3ieg_A          229 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP--SVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDN  305 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-ccc
Confidence                       25668899999999999999998752  233    235567788999999999999999998753 336


Q ss_pred             HHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010          393 EYTYKLVCDALNAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       393 ~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g  423 (451)
                      ..++..+..++...|+++.|.+.+++.++..
T Consensus       306 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          306 VNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            7899999999999999999999999998644

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.78  E-value=1e-16  Score=151.84  Aligned_cols=290  Identities=12%  Similarity=-0.018  Sum_probs=227.4

Q ss_pred             hhhcCHHHHHH-HHHHHhhcCCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          107 KVTLGLNKATE-FYHWVERFFDFFH--NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       107 ~~~~~~~~A~~-~f~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      ...+++++|++ .|+.......-.|  +...+..+...+.+.|++++|...++++.+...   .+..+|..+..++...|
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP---KHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCc
Confidence            33456778887 7775543211112  356688899999999999999999999998753   36678999999999999


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH---------------HH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI---------------LI  248 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~---------------li  248 (451)
                      ++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.....   .+...+..               .+
T Consensus       113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~  188 (368)
T 1fch_A          113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTP---AYAHLVTPAEEGAGGAGLGPSKRIL  188 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST---TTGGGCC---------------CTT
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---CcHHHHHHHHHHhhhhcccHHHHHH
Confidence            9999999999998854 34788999999999999999999999999987652   22222221               23


Q ss_pred             HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010          249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS  327 (451)
Q Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  327 (451)
                      ..+...|           ++++|...|+++.+..-. ++..++..+...|...|++++|...++++.+.. +.+..++..
T Consensus       189 ~~~~~~~-----------~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~  256 (368)
T 1fch_A          189 GSLLSDS-----------LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNK  256 (368)
T ss_dssp             HHHHHHH-----------HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHhhcc-----------cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            3333666           999999999999875321 147889999999999999999999999988763 336789999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----------CCHHHHH
Q 013010          328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV----------PREYTYK  397 (451)
Q Consensus       328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~----------p~~~t~~  397 (451)
                      +...|...|++++|...++++.+..  +.+...+..+...|.+.|++++|.+.|++..+..-.          ....+|.
T Consensus       257 l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~  334 (368)
T 1fch_A          257 LGATLANGNQSEEAVAAYRRALELQ--PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWS  334 (368)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHH
Confidence            9999999999999999999999875  567889999999999999999999999998753211          1268899


Q ss_pred             HHHHHHHhcCCCchHHHHHH
Q 013010          398 LVCDALNAAEEPSLLDDGLR  417 (451)
Q Consensus       398 ~li~~~~~~g~~~~a~~~~~  417 (451)
                      .+..+|...|+.+.+..+..
T Consensus       335 ~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          335 TLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHHHHHHHTCGGGHHHHHT
T ss_pred             HHHHHHHHhCChHhHHHhHH
Confidence            99999999999999987766

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.77  E-value=9.4e-16  Score=142.64  Aligned_cols=281  Identities=10%  Similarity=-0.055  Sum_probs=213.1

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-C
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-L  184 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~  184 (451)
                      +...+++++|+++|+.+.+.  .+.+...+..++..+...|++++|..+++++.+....   +...|..+...+...| +
T Consensus        32 ~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~  106 (330)
T 3hym_B           32 HYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS---NPVSWFAVGCYYLMVGHK  106 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---STHHHHHHHHHHHHSCSC
T ss_pred             HHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHhhhh
Confidence            44457788899888888764  3345566777778888888999999988888886522   5567888888888888 8


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI  264 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~  264 (451)
                      +++|.+.|++..+.. +.+...|..+...+...|++++|...|++.....   +.+..++..+...|...|         
T Consensus       107 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~---------  173 (330)
T 3hym_B          107 NEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM---KGCHLPMLYIGLEYGLTN---------  173 (330)
T ss_dssp             HHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCSHHHHHHHHHHHHTT---------
T ss_pred             HHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHh---------
Confidence            888999888888754 3357778888888888899999999888887764   235567777888888888         


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhcC
Q 013010          265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG--------CIPNRVTYNSFIRYYSVVN  336 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~t~~~li~~~~~~g  336 (451)
                        ++++|...+++..+.. +.+..++..+...+...|++++|...+++..+..        ...+..++..+...|...|
T Consensus       174 --~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  250 (330)
T 3hym_B          174 --NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLK  250 (330)
T ss_dssp             --CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTT
T ss_pred             --hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhc
Confidence              8888888888887653 3456778888888888899999988888876531        1234678888888888889


Q ss_pred             CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCCc
Q 013010          337 EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL-NAAEEPS  410 (451)
Q Consensus       337 ~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~-~~~g~~~  410 (451)
                      ++++|...+++..+..  +.+...+..+...|.+.|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus       251 ~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          251 KYAEALDYHRQALVLI--PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             CHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             CHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            9999999998888765  4567788888888888899999998888877643 22566777777777 4555554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=2.1e-16  Score=149.85  Aligned_cols=265  Identities=11%  Similarity=-0.014  Sum_probs=215.8

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+.+.|++++|...|+.+.+...   .+..+|..+...|...|++++|...|+++.+.. +.+..+|..+
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  139 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP---GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMAL  139 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence            455688899999999999999999999998763   267789999999999999999999999998853 3468899999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCC-----------HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPD-----------VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~-----------~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~  279 (451)
                      ..+|...|++++|...|+++.+..    |+           ...+..+...+...|           ++++|...|+++.
T Consensus       140 ~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~al  204 (365)
T 4eqf_A          140 AVSYTNTSHQQDACEALKNWIKQN----PKYKYLVKNKKGSPGLTRRMSKSPVDSS-----------VLEGVKELYLEAA  204 (365)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC----HHHHCC-------------------CCH-----------HHHHHHHHHHHHH
T ss_pred             HHHHHccccHHHHHHHHHHHHHhC----ccchHHHhhhccchHHHHHHHHHHhhhh-----------hHHHHHHHHHHHH
Confidence            999999999999999999998754    32           233445577888888           9999999999998


Q ss_pred             hcCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh
Q 013010          280 FKGFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS  358 (451)
Q Consensus       280 ~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~  358 (451)
                      +..-. ++..++..+...|...|++++|.+.|++..+.. +.+..+|..+...|...|++++|...|+++.+..  +.+.
T Consensus       205 ~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~  281 (365)
T 4eqf_A          205 HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ--PGFI  281 (365)
T ss_dssp             HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCch
Confidence            76321 157889999999999999999999999988763 3368899999999999999999999999999875  4568


Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhCC---CC--------CCHHHHHHHHHHHHhcCCCchHHHHHH
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELVDGG---SV--------PREYTYKLVCDALNAAEEPSLLDDGLR  417 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~--------p~~~t~~~li~~~~~~g~~~~a~~~~~  417 (451)
                      .++..+...|.+.|++++|.+.|++..+..   ..        .+...|..+..++...|+.+.+.+...
T Consensus       282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  351 (365)
T 4eqf_A          282 RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL  351 (365)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            899999999999999999999999987532   11        136789999999999999987665544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.75  E-value=6.3e-16  Score=153.18  Aligned_cols=294  Identities=9%  Similarity=-0.023  Sum_probs=244.0

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      +.+...+++++|+..|+.+...   .|+...|..+..++.+.|++++|...++.+.+.+.   .+..+|..+..+|...|
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g   87 (514)
T 2gw1_A           14 NQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP---DYSKVLLRRASANEGLG   87 (514)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHh
Confidence            3456678899999999999875   37899999999999999999999999999998763   36678999999999999


Q ss_pred             CHHHHHHHHHHHhhCCCCCC------------------------------------------------------------
Q 013010          184 LVNEALATFYRMKQFRCRPD------------------------------------------------------------  203 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~------------------------------------------------------------  203 (451)
                      ++++|...|+++.+.+- ++                                                            
T Consensus        88 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (514)
T 2gw1_A           88 KFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS  166 (514)
T ss_dssp             CHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence            99999999999876541 11                                                            


Q ss_pred             -------------------HHHHHHHHHHHHh---cCChHHHHHHHHHhhh-----CCCC--C----CCCHHHHHHHHHH
Q 013010          204 -------------------VYAYNVVINALCR---VGNFNKARFLLEQMEL-----PGFR--C----PPDVYTYTILISS  250 (451)
Q Consensus       204 -------------------~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~g~~--~----~p~~~~~~~li~~  250 (451)
                                         ...+......+..   .|++++|..+|+++..     ....  .    +.+..++..+...
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (514)
T 2gw1_A          167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIF  246 (514)
T ss_dssp             HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHH
Confidence                               2233333333333   7999999999999987     3111  0    1245678889999


Q ss_pred             HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013010          251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR  330 (451)
Q Consensus       251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  330 (451)
                      +...|           ++++|...|+++.+..  |+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus       247 ~~~~~-----------~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  312 (514)
T 2gw1_A          247 KFLKN-----------DPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ  312 (514)
T ss_dssp             HHHSS-----------CHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred             HHHCC-----------CHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence            99999           8999999999998764  447888999999999999999999999998763 336788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010          331 YYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS  410 (451)
Q Consensus       331 ~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~  410 (451)
                      .|...|++++|...+++..+..  +.+...+..+...|...|++++|.++++++.+.. +.+...+..+...+...|+++
T Consensus       313 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~  389 (514)
T 2gw1_A          313 MNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD  389 (514)
T ss_dssp             HHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999876  4567789999999999999999999999998753 235678899999999999999


Q ss_pred             hHHHHHHHHHH
Q 013010          411 LLDDGLRKRIR  421 (451)
Q Consensus       411 ~a~~~~~~~~~  421 (451)
                      .|.+.+.+.++
T Consensus       390 ~A~~~~~~a~~  400 (514)
T 2gw1_A          390 KALKQYDLAIE  400 (514)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998875

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.75  E-value=2.2e-15  Score=140.16  Aligned_cols=275  Identities=10%  Similarity=-0.084  Sum_probs=231.4

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYA  206 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  206 (451)
                      +.+.+...+..+...+...|++++|.++++.+.+....   +...+..++..+...|++++|..+++++.+.. +.+...
T Consensus        17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~   92 (330)
T 3hym_B           17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVS   92 (330)
T ss_dssp             ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHH
T ss_pred             hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHH
Confidence            34557778888999999999999999999999987633   44567788899999999999999999998853 346788


Q ss_pred             HHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 013010          207 YNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP  285 (451)
Q Consensus       207 ~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~  285 (451)
                      |..+...+...| ++++|...|++.....   +.+..+|..+...+...|           ++++|...+++..+.. +.
T Consensus        93 ~~~l~~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~-~~  157 (330)
T 3hym_B           93 WFAVGCYYLMVGHKNEHARRYLSKATTLE---KTYGPAWIAYGHSFAVES-----------EHDQAMAAYFTAAQLM-KG  157 (330)
T ss_dssp             HHHHHHHHHHSCSCHHHHHHHHHHHHTTC---TTCTHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHT-TT
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhC---CccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhc-cc
Confidence            999999999999 9999999999998775   346788999999999999           8999999999988753 23


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-------CCCh
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-------VPTS  358 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-------~p~~  358 (451)
                      +...+..+...|...|++++|.+.+++..+.. +.+..++..+...|...|++++|...+++..+....       ..+.
T Consensus       158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence            45677778999999999999999999998764 336789999999999999999999999998875311       2335


Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      ..+..+...|...|++++|.+.+++..+.. +.+...+..+..++...|+++.|.+.+++.++.
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL  299 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence            688999999999999999999999998754 235778999999999999999999999988753

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.73  E-value=1.8e-15  Score=140.57  Aligned_cols=267  Identities=10%  Similarity=-0.020  Sum_probs=216.8

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+...|++++|..+++++.+....   +..++..+...+...|++++|...|+++.+.. +.+..++..+
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   95 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAAL   95 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence            3445667888888999999999999999887532   66788889999999999999999999998853 3467888999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH--------------HH-HHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL--------------IS-SYCKYGMQTGCRKAIRRRIWEANHLF  275 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l--------------i~-~~~~~g~~~~~~~~~~~~~~~a~~~~  275 (451)
                      ...|...|++++|.+.++++.....   .+...+..+              .. .+...|           ++++|...+
T Consensus        96 a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~  161 (327)
T 3cv0_A           96 AVSHTNEHNANAALASLRAWLLSQP---QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN-----------EYRECRTLL  161 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTST---TTTTC--------------------CCTTSHH-----------HHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcc-----------cHHHHHHHH
Confidence            9999999999999999999887642   222233222              11 244445           899999999


Q ss_pred             HHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 013010          276 RLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV  355 (451)
Q Consensus       276 ~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  355 (451)
                      +++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+..  +
T Consensus       162 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~  237 (327)
T 3cv0_A          162 HAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN--P  237 (327)
T ss_dssp             HHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred             HHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C
Confidence            9988753 3467889999999999999999999999988763 3367889999999999999999999999998876  4


Q ss_pred             CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010          356 PTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP-----------REYTYKLVCDALNAAEEPSLLDDGLRKR  419 (451)
Q Consensus       356 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----------~~~t~~~li~~~~~~g~~~~a~~~~~~~  419 (451)
                      .+...+..+...|...|++++|.+.+++..+.....           +...|..+..++.+.|+.+.|...+++.
T Consensus       238 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            567889999999999999999999999988643221           4678999999999999999888777643

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.71  E-value=8.4e-15  Score=145.02  Aligned_cols=310  Identities=11%  Similarity=-0.066  Sum_probs=212.2

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------------------
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL------------------  166 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------------------  166 (451)
                      .+...+++++|+..|+.+.+.  .+.+...+..+..++.+.|++++|...|+.+...+....                  
T Consensus        48 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (514)
T 2gw1_A           48 CYVSVGDLKKVVEMSTKALEL--KPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSK  125 (514)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHH
Confidence            355667788888888877754  244566777788888888888888888877766542110                  


Q ss_pred             ----------------------------------------------------------ccHHhHHHHHHHHHh---cCCH
Q 013010          167 ----------------------------------------------------------VTTSSVTCLIKVLGE---EGLV  185 (451)
Q Consensus       167 ----------------------------------------------------------~~~~~~~~li~~~~~---~g~~  185 (451)
                                                                                .+...+......+..   .|++
T Consensus       126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (514)
T 2gw1_A          126 LKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESY  205 (514)
T ss_dssp             HTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHH
T ss_pred             HHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccH
Confidence                                                                      002222222222332   6777


Q ss_pred             HHHHHHHHHHhh-----CCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010          186 NEALATFYRMKQ-----FRC--------RPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC  252 (451)
Q Consensus       186 ~~A~~~~~~m~~-----~g~--------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~  252 (451)
                      ++|..+|+++.+     ..-        +.+..++..+...+...|++++|...|+++....    |+..++..+...|.
T Consensus       206 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----~~~~~~~~l~~~~~  281 (514)
T 2gw1_A          206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF----PRVNSYIYMALIMA  281 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----ccHHHHHHHHHHHH
Confidence            777777777766     211        1234566666777777777777777777776654    34666667777777


Q ss_pred             hcCCchhhhHHHH-----------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHH
Q 013010          253 KYGMQTGCRKAIR-----------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALEL  309 (451)
Q Consensus       253 ~~g~~~~~~~~~~-----------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  309 (451)
                      ..|+++.+.+.+.                       +++++|...+++..+.. +.+..++..+...+...|++++|...
T Consensus       282 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  360 (514)
T 2gw1_A          282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETL  360 (514)
T ss_dssp             TSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7776655554332                       36778888888877653 23556777788888888888888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHH---cCCHHHHHHHHH
Q 013010          310 FDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----SSSYTPIIHALCE---AGRVLEARDFLA  382 (451)
Q Consensus       310 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~---~g~~~~A~~l~~  382 (451)
                      ++.+.+.. +.+..++..+...|...|++++|...++++.+.....++    ...+..+...+..   .|++++|.+.++
T Consensus       361 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~  439 (514)
T 2gw1_A          361 FSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLE  439 (514)
T ss_dssp             HHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred             HHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHH
Confidence            88877652 225677888888888888888888888887765421222    3378888888888   888999998888


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010          383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       383 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g  423 (451)
                      +..+.. +.+..++..+...+.+.|+++.|.+.+++.++..
T Consensus       440 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          440 KASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA  479 (514)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            887643 2356778888888889999888888888887543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.71  E-value=5.2e-14  Score=132.21  Aligned_cols=268  Identities=12%  Similarity=0.069  Sum_probs=222.3

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+...|++++|...|+.+.+....   +..++..+...+...|++++|...|+++.+.. +-+...|..+
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   77 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQR   77 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence            3456778889999999999999999999987532   56789999999999999999999999998853 3367889999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCC----CHHHHHHH------------HHHHHhcCCchhhhHHHHHHHHHHHHH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPP----DVYTYTIL------------ISSYCKYGMQTGCRKAIRRRIWEANHL  274 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p----~~~~~~~l------------i~~~~~~g~~~~~~~~~~~~~~~a~~~  274 (451)
                      ...+...|++++|...|++..+..    |    +...+..+            ...+...|           ++++|...
T Consensus        78 ~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-----------~~~~A~~~  142 (359)
T 3ieg_A           78 GHLLLKQGKLDEAEDDFKKVLKSN----PSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-----------DYTAAITF  142 (359)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcC----CcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------CHHHHHHH
Confidence            999999999999999999998765    4    44455444            57788888           89999999


Q ss_pred             HHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 013010          275 FRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG  354 (451)
Q Consensus       275 ~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  354 (451)
                      ++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+...|...|++++|...+++..+..  
T Consensus       143 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--  218 (359)
T 3ieg_A          143 LDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--  218 (359)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--
Confidence            99988753 4467888999999999999999999999998763 3478899999999999999999999999999875  


Q ss_pred             CCChhhHH------------HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHHhcCCCchHHHHHH
Q 013010          355 VPTSSSYT------------PIIHALCEAGRVLEARDFLAELVDGGSVPR-E----YTYKLVCDALNAAEEPSLLDDGLR  417 (451)
Q Consensus       355 ~p~~~~~~------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~----~t~~~li~~~~~~g~~~~a~~~~~  417 (451)
                      +.+...+.            .+...+.+.|++++|.+.+++..+..  |+ .    ..+..+..++...|+++.|.+.+.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  296 (359)
T 3ieg_A          219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICS  296 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            33344333            22566899999999999999998754  33 2    235567889999999999999999


Q ss_pred             HHHHhc
Q 013010          418 KRIRDG  423 (451)
Q Consensus       418 ~~~~~g  423 (451)
                      +.++..
T Consensus       297 ~~~~~~  302 (359)
T 3ieg_A          297 EVLQME  302 (359)
T ss_dssp             HHHHHC
T ss_pred             HHHHhC
Confidence            998643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.70  E-value=4.7e-15  Score=140.41  Aligned_cols=260  Identities=12%  Similarity=-0.029  Sum_probs=213.3

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      ..+...+++++|+..|+.+.+.  .+.+...+..+...+.+.|++++|...++++.+.+.   .+..++..+...|...|
T Consensus        72 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g  146 (368)
T 1fch_A           72 LRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP---DNQTALMALAVSFTNES  146 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcC
Confidence            3456678899999999999864  355778899999999999999999999999998863   26778999999999999


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHH---------------HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNV---------------VINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      ++++|.+.|+++.+... .+...+..               .+..+...|++++|...|+++...... .++..++..+.
T Consensus       147 ~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~l~  224 (368)
T 1fch_A          147 LQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLG  224 (368)
T ss_dssp             CHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcC-cccHHHHHHHH
Confidence            99999999999988542 22222221               244445899999999999999876521 11588999999


Q ss_pred             HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 013010          249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSF  328 (451)
Q Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~l  328 (451)
                      ..|.+.|           ++++|...|++..+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+
T Consensus       225 ~~~~~~g-----------~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l  291 (368)
T 1fch_A          225 VLFNLSG-----------EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNL  291 (368)
T ss_dssp             HHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHcC-----------CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            9999999           8999999999988753 3457889999999999999999999999988763 3368899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCC---------CChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010          329 IRYYSVVNEIDKAIEMMRKMQNLNHGV---------PTSSSYTPIIHALCEAGRVLEARDFLAE  383 (451)
Q Consensus       329 i~~~~~~g~~~~A~~~~~~m~~~~~~~---------p~~~~~~~li~~~~~~g~~~~A~~l~~~  383 (451)
                      ...|.+.|++++|...|+++.+.....         ....+|..+..+|...|+.++|..++.+
T Consensus       292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            999999999999999999988754211         1167899999999999999999988763

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.69  E-value=1.2e-14  Score=145.03  Aligned_cols=295  Identities=11%  Similarity=0.051  Sum_probs=232.1

Q ss_pred             CCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010          103 RDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE  182 (451)
Q Consensus       103 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~  182 (451)
                      +..+...+++++|++.|+.+...  .+.+...+..+..++.+.|++++|.+.+++..+.+.   .+..++..+..++...
T Consensus        32 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~  106 (537)
T 3fp2_A           32 GNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP---DHSKALLRRASANESL  106 (537)
T ss_dssp             HHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHHc
Confidence            34466678889999999999865  345788899999999999999999999999998863   2677899999999999


Q ss_pred             CCHHHHHHHHHHHhhCCC------------------------------------CCCHH---------------------
Q 013010          183 GLVNEALATFYRMKQFRC------------------------------------RPDVY---------------------  205 (451)
Q Consensus       183 g~~~~A~~~~~~m~~~g~------------------------------------~p~~~---------------------  205 (451)
                      |++++|...|+.+....-                                    .|+..                     
T Consensus       107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (537)
T 3fp2_A          107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS  186 (537)
T ss_dssp             TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred             CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence            999999999964422110                                    01111                     


Q ss_pred             ---------HHHHHHHHHH--------hcCChHHHHHHHHHhhhCCCCCCCCH-------HHHHHHHHHHHhcCCchhhh
Q 013010          206 ---------AYNVVINALC--------RVGNFNKARFLLEQMELPGFRCPPDV-------YTYTILISSYCKYGMQTGCR  261 (451)
Q Consensus       206 ---------~~~~li~~~~--------~~g~~~~a~~~~~~m~~~g~~~~p~~-------~~~~~li~~~~~~g~~~~~~  261 (451)
                               ....+...+.        ..|++++|..+|+++.+...   .+.       .++..+...+...|      
T Consensus       187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p---~~~~~~~~~~~~~~~~g~~~~~~~------  257 (537)
T 3fp2_A          187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANT---VDDPLRENAALALCYTGIFHFLKN------  257 (537)
T ss_dssp             CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--C---CCHHHHHHHHHHHHHHHHHHHHTT------
T ss_pred             cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCC---CcchhhHHHHHHHHHHHHHHHhcc------
Confidence                     1111111111        11478899999999987652   232       35666677777888      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010          262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A  341 (451)
                           ++++|...+++..+.  .|+..++..+...+...|++++|.+.++.+.+.. +.+..+|..+...|...|++++|
T Consensus       258 -----~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  329 (537)
T 3fp2_A          258 -----NLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNA  329 (537)
T ss_dssp             -----CHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             -----cHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence                 889999999999875  4667888889999999999999999999988764 23688899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          342 IEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      ...+++..+..  +.+...+..+...|...|++++|.++++++.+.. +.+...+..+...+...|+++.|.+.+.+.++
T Consensus       330 ~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  406 (537)
T 3fp2_A          330 KEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR  406 (537)
T ss_dssp             HHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            99999999876  4566789999999999999999999999998763 33567889999999999999999999999875


Q ss_pred             h
Q 013010          422 D  422 (451)
Q Consensus       422 ~  422 (451)
                      .
T Consensus       407 ~  407 (537)
T 3fp2_A          407 L  407 (537)
T ss_dssp             H
T ss_pred             c
Confidence            4

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.69  E-value=5.8e-15  Score=139.82  Aligned_cols=259  Identities=11%  Similarity=-0.063  Sum_probs=208.6

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      ..+...+++++|+..|+.+...  .+.+...|..+...+.+.|++++|...|++..+...   .+..+|..+...|...|
T Consensus        73 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g  147 (365)
T 4eqf_A           73 LKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP---NNLKALMALAVSYTNTS  147 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHccc
Confidence            3466678899999999999865  355788999999999999999999999999998753   25778999999999999


Q ss_pred             CHHHHHHHHHHHhhCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010          184 LVNEALATFYRMKQFRCRPD-----------VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC  252 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~  252 (451)
                      ++++|...|+++.+..  |+           ...+..+...+...|++++|..+|+++....-. .++..++..+...|.
T Consensus       148 ~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~l~~~~~  224 (365)
T 4eqf_A          148 HQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD-MIDPDLQTGLGVLFH  224 (365)
T ss_dssp             CHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCS-SCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC-ccCHHHHHHHHHHHH
Confidence            9999999999998742  32           233445678899999999999999999887521 126889999999999


Q ss_pred             hcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010          253 KYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYY  332 (451)
Q Consensus       253 ~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~  332 (451)
                      ..|           ++++|...|++..+.. +.+..+|+.+..+|...|++++|...|++..+.. +.+..++..+...|
T Consensus       225 ~~g-----------~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  291 (365)
T 4eqf_A          225 LSG-----------EFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISC  291 (365)
T ss_dssp             HHT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HCC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHH
Confidence            999           9999999999988753 3467899999999999999999999999988763 23588999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCC----------CCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010          333 SVVNEIDKAIEMMRKMQNLNHG----------VPTSSSYTPIIHALCEAGRVLEARDFLAE  383 (451)
Q Consensus       333 ~~~g~~~~A~~~~~~m~~~~~~----------~p~~~~~~~li~~~~~~g~~~~A~~l~~~  383 (451)
                      ...|++++|...|+++.+....          ..+...|..+..++...|+.+.|.++..+
T Consensus       292 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          292 INLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999999998875421          11367899999999999999988887654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.68  E-value=1.6e-14  Score=134.09  Aligned_cols=257  Identities=15%  Similarity=-0.008  Sum_probs=211.2

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL  184 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~  184 (451)
                      .+...+++++|+.+|+.+.+.  .+.+...+..+...+...|++++|...++++.+...   .+..++..+...|...|+
T Consensus        30 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           30 SMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcCC
Confidence            355678899999999999864  344778889999999999999999999999998752   256789999999999999


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHH--------------HH-HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVV--------------IN-ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS  249 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~  249 (451)
                      +++|.+.|+++.+.. +.+...+..+              .. .+...|++++|...++++.+..   +.+..++..+..
T Consensus       105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~  180 (327)
T 3cv0_A          105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN---PNDAQLHASLGV  180 (327)
T ss_dssp             HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS---TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC---CCCHHHHHHHHH
Confidence            999999999998753 1222333332              22 3677889999999999998775   357889999999


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI  329 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  329 (451)
                      .|...|           ++++|...+++..+.. +.+..++..+...+...|++++|.+.++++.+.. +.+..++..+.
T Consensus       181 ~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~  247 (327)
T 3cv0_A          181 LYNLSN-----------NYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA  247 (327)
T ss_dssp             HHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHhc-----------cHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence            999999           8999999999988753 3457889999999999999999999999988763 23688899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCC-----------ChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          330 RYYSVVNEIDKAIEMMRKMQNLNHGVP-----------TSSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      ..|...|++++|.+.+++..+... ..           +...|..+..++.+.|+.++|..++++.
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQV-GGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHT-TSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCC-ccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999999999999887652 11           4778999999999999999999988643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.65  E-value=6.4e-14  Score=128.40  Aligned_cols=245  Identities=12%  Similarity=0.079  Sum_probs=151.8

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCH--HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNE--MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN  186 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~  186 (451)
                      .|...+|++.++...   ...|+.  .....+..+|...|+++.|...++.   .  . +++..++..+...+...|+.+
T Consensus        12 ~g~y~~ai~~~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~--~-~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A           12 IGSYQQCINEAQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S--S-APELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             TTCHHHHHHHHHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T--S-CHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c--C-ChhHHHHHHHHHHHcCCCcHH
Confidence            456677777665543   233332  2334456677777777777765533   1  1 235556666777777777777


Q ss_pred             HHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010          187 EALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR  265 (451)
Q Consensus       187 ~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~  265 (451)
                      +|++.++++...+..| +...+..+..++...|++++|++.+++    +    .+..++..+...|.+.|          
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~----~----~~~~~~~~l~~~~~~~g----------  144 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ----G----DSLECMAMTVQILLKLD----------  144 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT----C----CSHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC----C----CCHHHHHHHHHHHHHCC----------
Confidence            7777777776655444 344455555667777777777777765    1    46667777777777777          


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 013010          266 RRIWEANHLFRLMLFKGFVPDVVAY---NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       266 ~~~~~a~~~~~~m~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~  342 (451)
                       ++++|.+.|+++.+..  |+....   ..++..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++|.
T Consensus       145 -~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          145 -RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             -CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence             7777777777776552  443211   12223333446777777777777665 2346667777777777777777777


Q ss_pred             HHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHH-HHHHHHHHHh
Q 013010          343 EMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE-ARDFLAELVD  386 (451)
Q Consensus       343 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~  386 (451)
                      ..+++..+..  +-+..++..++..+...|+.++ +.++++++.+
T Consensus       221 ~~l~~al~~~--p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          221 GVLQEALDKD--SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             HHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            7777766655  4456667777777777777654 4566666665

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.64  E-value=8.5e-14  Score=127.58  Aligned_cols=253  Identities=10%  Similarity=-0.006  Sum_probs=202.9

Q ss_pred             HHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010          142 FARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN  221 (451)
Q Consensus       142 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  221 (451)
                      ....|++..|...++......  |.........+.++|...|+++.|+..++..    -+|+..++..+...+...++.+
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence            445799999999988765432  2222345567789999999999999876542    3578889999999999999999


Q ss_pred             HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010          222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY  301 (451)
Q Consensus       222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  301 (451)
                      +|.+.++++...+.. |-+...+..+...|...|           ++++|++.+++      +.+...+..+...+.+.|
T Consensus        83 ~A~~~l~~ll~~~~~-P~~~~~~~~la~~~~~~g-----------~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g  144 (291)
T 3mkr_A           83 AIVAELDREMSRSVD-VTNTTFLLMAASIYFYDQ-----------NPDAALRTLHQ------GDSLECMAMTVQILLKLD  144 (291)
T ss_dssp             HHHHHHHHHHHSCCC-CSCHHHHHHHHHHHHHTT-----------CHHHHHHHHTT------CCSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcccC-CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHhC------CCCHHHHHHHHHHHHHCC
Confidence            999999999876532 246667777889999999           89999999987      457888999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 013010          302 RIERALELFDDMNKKGCIPNRVTY---NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR  378 (451)
Q Consensus       302 ~~~~a~~~~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  378 (451)
                      ++++|.+.++.+.+..  |+....   ..++..+...|++++|..+|+++.+..  +.+...++.+..++.+.|++++|.
T Consensus       145 ~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          145 RLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC--SPTLLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             CHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999998874  654322   223344455699999999999999985  678889999999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHhc
Q 013010          379 DFLAELVDGGSVPREYTYKLVCDALNAAEEPSL-LDDGLRKRIRDG  423 (451)
Q Consensus       379 ~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-a~~~~~~~~~~g  423 (451)
                      +.|++.++.. +-+..++..++..+...|+.++ +.+.+++.++..
T Consensus       221 ~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          221 GVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            9999988753 2367789999999999999975 567777777544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.63  E-value=2.2e-13  Score=135.67  Aligned_cols=232  Identities=12%  Similarity=-0.035  Sum_probs=174.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      +..+...+...|++++|...|++..+.  .|+..+|..+...+...|++++|...|++.....   +.+..+|..+...|
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~  320 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN---PEYPPTYYHRGQMY  320 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC---CCCHHHHHHHHHHH
Confidence            444556666677777888887777764  4556777777777777788888888887777654   24667777777788


Q ss_pred             HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010          252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY  331 (451)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  331 (451)
                      ...|           ++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus       321 ~~~~-----------~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  387 (537)
T 3fp2_A          321 FILQ-----------DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEI  387 (537)
T ss_dssp             HHTT-----------CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HhcC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            8877           8888888888887653 2345778888888999999999999999887763 3356788888889


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCC----ChhhHHHHHHHHHHc----------CCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010          332 YSVVNEIDKAIEMMRKMQNLNHGVP----TSSSYTPIIHALCEA----------GRVLEARDFLAELVDGGSVPREYTYK  397 (451)
Q Consensus       332 ~~~~g~~~~A~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~----------g~~~~A~~l~~~m~~~g~~p~~~t~~  397 (451)
                      |...|++++|...++++.+.....+    ....+......+...          |++++|...|++..+.. +.+...+.
T Consensus       388 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~  466 (537)
T 3fp2_A          388 LTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKI  466 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            9999999999999988776542111    112234445667777          99999999999888753 23567899


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          398 LVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       398 ~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      .+..++.+.|+++.|.+.+++.++.
T Consensus       467 ~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          467 GLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999999999999999999988854

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.59  E-value=8.7e-15  Score=138.18  Aligned_cols=240  Identities=12%  Similarity=0.032  Sum_probs=101.8

Q ss_pred             hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      ..+++++|.++++.+.       +..+|..|+.++.+.|++++|.+.|.+.        .+..+|..++.++...|++++
T Consensus        15 ~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika--------~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           15 HIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC--------CCHHHHHHHHHHHHhCCCHHH
Confidence            4566899999999874       2358999999999999999999999642        255579999999999999999


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR  267 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~  267 (451)
                      |...++..++.  .+++.+.+.++.+|.+.|+++++.++++         .|+..+|+.+...|...|           .
T Consensus        80 Ai~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~---------~pn~~a~~~IGd~~~~~g-----------~  137 (449)
T 1b89_A           80 LVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN---------GPNNAHIQQVGDRCYDEK-----------M  137 (449)
T ss_dssp             -------------------------------CHHHHTTTTT---------CC---------------------------C
T ss_pred             HHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc---------CCcHHHHHHHHHHHHHcC-----------C
Confidence            99977777663  4567889999999999999999887774         267789999999999999           8


Q ss_pred             HHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013010          268 IWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK  347 (451)
Q Consensus       268 ~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~  347 (451)
                      +++|..+|..+         ..|..+..++++.|++++|.+.+..+      -++.+|..++.+|...|+++.|......
T Consensus       138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~  202 (449)
T 1b89_A          138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH  202 (449)
T ss_dssp             TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT
T ss_pred             HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH
Confidence            88999999866         47899999999999999999999987      2789999999999999999999665543


Q ss_pred             HHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 013010          348 MQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAA  406 (451)
Q Consensus       348 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~  406 (451)
                      +      ...+.....++..|.+.|++++|..+++...... +-....|+-|--+|++-
T Consensus       203 L------~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          203 I------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF  254 (449)
T ss_dssp             T------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred             H------HhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc
Confidence            2      2333445578889999999999999998877544 34456676666666655

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.59  E-value=7.7e-13  Score=118.16  Aligned_cols=225  Identities=11%  Similarity=0.021  Sum_probs=168.8

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VY  205 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~  205 (451)
                      ...+..+...+...|++++|...++...+.. .   +..+|..+..++...|++++|...|++..+..  ..++    ..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~---~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~   80 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-K---DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-C---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-c---cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence            3457777888888888888888888888776 2   45678888888888888888888888877632  1112    57


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 013010          206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP  285 (451)
Q Consensus       206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~  285 (451)
                      +|..+...|...|++++|...|++.....    |+.       ..+.+.|           ++++|...++.+.... +.
T Consensus        81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~~-------~~~~~~~-----------~~~~a~~~~~~~~~~~-~~  137 (258)
T 3uq3_A           81 SFARIGNAYHKLGDLKKTIEYYQKSLTEH----RTA-------DILTKLR-----------NAEKELKKAEAEAYVN-PE  137 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCH-------HHHHHHH-----------HHHHHHHHHHHHHHCC-HH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhcC----chh-------HHHHHHh-----------HHHHHHHHHHHHHHcC-cc
Confidence            78888888888888888888888887754    553       2345555           7788888888877642 23


Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII  365 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  365 (451)
                      +...+..+...+...|++++|.+.+++..+.. +.+..+|..+...|...|++++|...+++..+..  +.+...|..+.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~  214 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKA  214 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--HHHHHHHHHHH
Confidence            45667777778888888888888888877653 2357778888888888888888888888887765  45577788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh
Q 013010          366 HALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       366 ~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ..+.+.|++++|.+.+++..+
T Consensus       215 ~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          215 TAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHH
Confidence            888888888888888877764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.57  E-value=4.8e-15  Score=139.90  Aligned_cols=221  Identities=16%  Similarity=0.190  Sum_probs=93.9

Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH
Q 013010          143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK  222 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  222 (451)
                      -+.|++++|.++++++.        +..+|..|..++.+.|++++|++.|.+.      +|..+|..++.++...|++++
T Consensus        14 ~~~~~ld~A~~fae~~~--------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCN--------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCC--------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHH
Confidence            36788999999999982        2237999999999999999999999652      578899999999999999999


Q ss_pred             HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 013010          223 ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR  302 (451)
Q Consensus       223 a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  302 (451)
                      |.++++..++..    ++..+.+.++.+|.+.|           +++++.++++       .|+..+|+.+...|...|.
T Consensus        80 Ai~yl~~ark~~----~~~~i~~~Li~~Y~Klg-----------~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~  137 (449)
T 1b89_A           80 LVKYLQMARKKA----RESYVETELIFALAKTN-----------RLAELEEFIN-------GPNNAHIQQVGDRCYDEKM  137 (449)
T ss_dssp             --------------------------------------------CHHHHTTTTT-------CC----------------C
T ss_pred             HHHHHHHHHHhC----ccchhHHHHHHHHHHhC-----------CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCC
Confidence            999888777642    56888999999999999           8888888774       3788899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHH
Q 013010          303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLA  382 (451)
Q Consensus       303 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~  382 (451)
                      +++|...|..+         ..|..+..++.+.|++++|.+.+.++       .++.+|..++.+|+..|+++.|.....
T Consensus       138 yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l  201 (449)
T 1b89_A          138 YDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGL  201 (449)
T ss_dssp             TTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTT
T ss_pred             HHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHH
Confidence            99999999977         47999999999999999999999988       257999999999999999999966544


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          383 ELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       383 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                      .     +...+.-...++..|.+.|.++++...+++.+
T Consensus       202 ~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL  234 (449)
T 1b89_A          202 H-----IVVHADELEELINYYQDRGYFEELITMLEAAL  234 (449)
T ss_dssp             T-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             H-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            3     33444556679999999999999999998876

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.56  E-value=3.3e-13  Score=121.99  Aligned_cols=251  Identities=13%  Similarity=0.003  Sum_probs=186.3

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCC--CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDF--FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE  182 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~  182 (451)
                      +....+++++|+..|+.+.+....  +.+...+..+...+...|++++|...|++..+....   +..+|..+...|...
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~la~~~~~~   90 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQA   90 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHT
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC---cHHHHHHHHHHHHHc
Confidence            344456789999999999864221  224667888999999999999999999999887532   567899999999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH
Q 013010          183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK  262 (451)
Q Consensus       183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~  262 (451)
                      |++++|...|++..+.. +.+..++..+...|...|++++|...|+++.+..    |+.......+..+...|       
T Consensus        91 ~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~-------  158 (275)
T 1xnf_A           91 GNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----PNDPFRSLWLYLAEQKL-------  158 (275)
T ss_dssp             TCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHH-------
T ss_pred             cCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHhc-------
Confidence            99999999999998853 3367889999999999999999999999998764    44444444455555556       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhcCCHH
Q 013010          263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI--P-NRVTYNSFIRYYSVVNEID  339 (451)
Q Consensus       263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~t~~~li~~~~~~g~~~  339 (451)
                          ++++|...+.+..... +++...+ .++..+...++.++|.+.+....+....  | +..++..+...|...|+++
T Consensus       159 ----~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  232 (275)
T 1xnf_A          159 ----DEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLD  232 (275)
T ss_dssp             ----CHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ----CHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHH
Confidence                8889999998776642 3343444 4677777888888999999887655211  1 1577888888899999999


Q ss_pred             HHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010          340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL  381 (451)
Q Consensus       340 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~  381 (451)
                      +|...|++.....   |+.  +.....++...|++++|.+-+
T Consensus       233 ~A~~~~~~al~~~---p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          233 SATALFKLAVANN---VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHHHHTTC---CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHhCC---chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            9999999988754   322  223345667778888877665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.56  E-value=9.6e-13  Score=117.53  Aligned_cols=230  Identities=13%  Similarity=0.054  Sum_probs=196.1

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC----HHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYT  243 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~----~~~  243 (451)
                      ....|..+...+...|++++|...|++..+..  .+..+|..+..+|...|++++|...+++.........|+    ..+
T Consensus         4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   81 (258)
T 3uq3_A            4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS   81 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence            34578889999999999999999999999877  788999999999999999999999999987654111122    588


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010          244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV  323 (451)
Q Consensus       244 ~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  323 (451)
                      |..+...|...|           ++++|...|++..+.  .|+.       ..+...|++++|.+.++.+.... +.+..
T Consensus        82 ~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~  140 (258)
T 3uq3_A           82 FARIGNAYHKLG-----------DLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAE  140 (258)
T ss_dssp             HHHHHHHHHHTT-----------CHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHH
T ss_pred             HHHHHHHHHHcc-----------cHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHH
Confidence            999999999999           899999999998875  3442       45677889999999999988763 22567


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010          324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL  403 (451)
Q Consensus       324 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~  403 (451)
                      .+..+...|...|++++|...+++..+..  +.+...|..+...|...|++++|.+.+++..+.. +.+...|..+..++
T Consensus       141 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~  217 (258)
T 3uq3_A          141 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ  217 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence            78889999999999999999999999876  5678899999999999999999999999998754 33578899999999


Q ss_pred             HhcCCCchHHHHHHHHHHhc
Q 013010          404 NAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       404 ~~~g~~~~a~~~~~~~~~~g  423 (451)
                      ...|+++.|.+.+++.++..
T Consensus       218 ~~~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          218 IAVKEYASALETLDAARTKD  237 (258)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHhC
Confidence            99999999999999888644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.54  E-value=1.5e-12  Score=113.74  Aligned_cols=198  Identities=15%  Similarity=-0.010  Sum_probs=143.1

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      +...+..+...+...|++++|...|++..+.. +.+...|..+..++.+.|++++|...|++..+..   |.+...+..+
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~l   79 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART---PRYLGGYMVL   79 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCcHHHHHHH
Confidence            44456666777777777777777777776643 2356667777777777777777777777776654   2356667777


Q ss_pred             HHHHHhc-----------CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010          248 ISSYCKY-----------GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK  316 (451)
Q Consensus       248 i~~~~~~-----------g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  316 (451)
                      ...|...           |           ++++|...|++..+.. +-+...+..+-.++...|++++|...|++..+.
T Consensus        80 g~~~~~~~~~~~~~~~~~g-----------~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKG-----------YLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL  147 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHH-----------HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhhhhccccc-----------CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            7777766           6           9999999999888752 235677888888999999999999999999887


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          317 GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       317 g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      .  .+...+..+-..|...|++++|+..|++..+..  +.+...+..+...+...|++++|.+.+++..
T Consensus       148 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          148 E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred             c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            7  688899999999999999999999999998876  5677888888899999999999999887654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.53  E-value=3.2e-12  Score=114.04  Aligned_cols=203  Identities=14%  Similarity=0.029  Sum_probs=139.8

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ...+..+...+...|++++|.+.++++.+...   .+...+..+...|...|++++|.+.|+++.+.. +.+...+..+.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la  112 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP---SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYG  112 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHH
Confidence            56677777788888888888888888877642   245677777788888888888888888777643 23567777777


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN  291 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  291 (451)
                      ..|...|++++|.++|+++...+.. +.+...+..+...|...|           ++++|...+++..+.. +.+...+.
T Consensus       113 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~-~~~~~~~~  179 (252)
T 2ho1_A          113 GFLYEQKRYEEAYQRLLEASQDTLY-PERSRVFENLGLVSLQMK-----------KPAQAKEYFEKSLRLN-RNQPSVAL  179 (252)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTCTTC-TTHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-SCCHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHHhCccC-cccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcC-cccHHHHH
Confidence            7777888888888888777762221 235566777777777777           7777777777776542 23455666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          292 CLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       292 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      .+...+...|++++|...++.+.+.. +.+...+..+...|...|+.++|.++++++.+..
T Consensus       180 ~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          180 EMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            66667777777777777777666542 2345566666666666777777777777666653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.53  E-value=6.5e-12  Score=109.54  Aligned_cols=200  Identities=14%  Similarity=-0.032  Sum_probs=106.1

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      ...+..+...+...|++++|.+.|+++.+.. +.+...|..+...|...|++++|.+.+++.....   +.+..++..+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~   83 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK---PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCChHHHHHHH
Confidence            3445555555555555555555555555432 2234455555555555555555555555555433   23445555555


Q ss_pred             HHHHhc-CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010          249 SSYCKY-GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN  326 (451)
Q Consensus       249 ~~~~~~-g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  326 (451)
                      ..|... |           ++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus        84 ~~~~~~~~-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  151 (225)
T 2vq2_A           84 WFLCGRLN-----------RPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFK  151 (225)
T ss_dssp             HHHHTTTC-----------CHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             HHHHHhcC-----------cHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHH
Confidence            555555 5           55555555555554211222 3445555555555566666666555555432 11355555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGV-PTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       327 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      .+...|...|++++|...++++.+..  + .+...+..+...+...|+.++|..+++.+.+
T Consensus       152 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          152 ELARTKMLAGQLGDADYYFKKYQSRV--EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            55566666666666666666655543  2 3444555555555566666666666655543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=1.3e-12  Score=114.31  Aligned_cols=201  Identities=13%  Similarity=0.053  Sum_probs=161.2

Q ss_pred             CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010          129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN  208 (451)
Q Consensus       129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  208 (451)
                      +++...+..+...+.+.|++++|...|++..+...   .+...+..+...+.+.|++++|+..|++..+.. +-+...+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~   77 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP---QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYM   77 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHH
Confidence            55777888899999999999999999999998763   367789999999999999999999999998854 33578889


Q ss_pred             HHHHHHHhc-----------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 013010          209 VVINALCRV-----------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL  277 (451)
Q Consensus       209 ~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~  277 (451)
                      .+..++...           |++++|...|++..+..   |-+...+..+...|...|           ++++|...|++
T Consensus        78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---P~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~  143 (217)
T 2pl2_A           78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN---PRYAPLHLQRGLVYALLG-----------ERDKAEASLKQ  143 (217)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC---cccHHHHHHHHHHHHHcC-----------ChHHHHHHHHH
Confidence            999999999           99999999999998865   346788999999999999           99999999999


Q ss_pred             HHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          278 MLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       278 m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      ..+..  .+...+..+..+|...|++++|...|+...+.. +-+...+..+...+...|++++|+..+++...
T Consensus       144 al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          144 ALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred             HHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            98876  688889999999999999999999999988763 22678888999999999999999999987643

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.53  E-value=1.2e-11  Score=110.20  Aligned_cols=209  Identities=10%  Similarity=-0.082  Sum_probs=176.9

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      ...|..+...+...|++++|.+.|+++.+.. +.+..++..+...|...|++++|.+.|+++....   +.+...+..+.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~la  112 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD---SRNARVLNNYG  112 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---cCcHHHHHHHH
Confidence            5678888899999999999999999998753 3468889999999999999999999999988765   34788899999


Q ss_pred             HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010          249 SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS  327 (451)
Q Consensus       249 ~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  327 (451)
                      ..|...|           ++++|.++++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus       113 ~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~  180 (252)
T 2ho1_A          113 GFLYEQK-----------RYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALE  180 (252)
T ss_dssp             HHHHHTT-----------CHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred             HHHHHHh-----------HHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence            9999999           8999999999988733344 45678888899999999999999999988763 235788999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010          328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYK  397 (451)
Q Consensus       328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~  397 (451)
                      +...|...|++++|...++++.+..  +.+...+..+...+...|+.++|.++++++.+..  |+...+.
T Consensus       181 la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~  246 (252)
T 2ho1_A          181 MADLLYKEREYVPARQYYDLFAQGG--GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY--PGSLEYQ  246 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCCHHHH
Confidence            9999999999999999999998865  5677788889999999999999999999998753  5444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=2.7e-11  Score=109.62  Aligned_cols=226  Identities=11%  Similarity=-0.028  Sum_probs=127.2

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHH
Q 013010          170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYT  245 (451)
Q Consensus       170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~  245 (451)
                      .++..+...|...|++++|...|++..+.   -+..++..+...|..    .+++++|...|++..+.+     +..++.
T Consensus         7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~   78 (273)
T 1ouv_A            7 KELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCH   78 (273)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----CHHHHH
Confidence            34444555555555555555555555542   233444455555555    555555555555555443     344555


Q ss_pred             HHHHHHHh----cCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 013010          246 ILISSYCK----YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK----TYRIERALELFDDMNKKG  317 (451)
Q Consensus       246 ~li~~~~~----~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  317 (451)
                      .+...|..    .+           ++++|...|++..+.+   +...+..+-..|..    .+++++|.+.|+...+.+
T Consensus        79 ~lg~~~~~g~~~~~-----------~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~  144 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQ-----------NTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN  144 (273)
T ss_dssp             HHHHHHHHTSSSCC-----------CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCccc-----------CHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC
Confidence            55555555    45           5555555555555443   44455555555555    566666666666655544


Q ss_pred             CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 013010          318 CIPNRVTYNSFIRYYSV----VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGGS  389 (451)
Q Consensus       318 ~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~  389 (451)
                         +...+..+-..|..    .+++++|...|++..+.+    +...+..+-..|..    .+++++|.+.|++..+.+.
T Consensus       145 ---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~  217 (273)
T 1ouv_A          145 ---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN  217 (273)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC
T ss_pred             ---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC
Confidence               34455555555555    666666666666666543    24555556666666    6667777777766666542


Q ss_pred             CCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhchHHH
Q 013010          390 VPREYTYKLVCDALNA----AEEPSLLDDGLRKRIRDGIEYR  427 (451)
Q Consensus       390 ~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~  427 (451)
                         ...+..+...|..    .|+.++|.+.+++.++.|....
T Consensus       218 ---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          218 ---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             ---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             ---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence               4556666666666    6777777777777766665443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.53  E-value=1.1e-10  Score=105.58  Aligned_cols=224  Identities=11%  Similarity=-0.007  Sum_probs=198.2

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE----EGLVNEALATFYRMKQFRCRPDVYA  206 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~  206 (451)
                      +...+..+...+...|++++|...|++..+.+     +...+..+...|..    .+++++|...|++..+.+   +...
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a   76 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG   76 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence            66788889999999999999999999999843     45678889999999    999999999999999875   7889


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh----cCCchhhhHHHHHHHHHHHHHHHHH
Q 013010          207 YNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK----YGMQTGCRKAIRRRIWEANHLFRLM  278 (451)
Q Consensus       207 ~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~~~~a~~~~~~m  278 (451)
                      +..+...|..    .+++++|...|++..+.+     +..++..+...|..    .+           ++++|...|++.
T Consensus        77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~~~~~~~~~~-----------~~~~A~~~~~~a  140 (273)
T 1ouv_A           77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK-----YAEGCASLGGIYHDGKVVTR-----------DFKKAVEYFTKA  140 (273)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCC-----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-----CccHHHHHHHHHHcCCCccc-----------CHHHHHHHHHHH
Confidence            9999999999    999999999999998875     66788999999998    88           999999999999


Q ss_pred             HhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 013010          279 LFKGFVPDVVAYNCLIDGCCK----TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV----VNEIDKAIEMMRKMQN  350 (451)
Q Consensus       279 ~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~~~~~m~~  350 (451)
                      .+.+   +...+..+-..|..    .+++++|...|+...+.+   +...+..+-..|..    .+++++|...|++..+
T Consensus       141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~  214 (273)
T 1ouv_A          141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE  214 (273)
T ss_dssp             HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred             HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence            8876   56777888888888    899999999999998875   56788888889999    9999999999999988


Q ss_pred             cCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCC
Q 013010          351 LNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGG  388 (451)
Q Consensus       351 ~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g  388 (451)
                      .+.    ...+..+-..|..    .+++++|.+.|++..+.|
T Consensus       215 ~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          215 LEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             TTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            652    6678888888888    899999999999998876

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.51  E-value=1.3e-11  Score=107.51  Aligned_cols=205  Identities=10%  Similarity=-0.019  Sum_probs=173.5

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+...|++++|.+.++...+....   +...+..+...|...|++++|.+.|++..+.. +.+..++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l   82 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPK---NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY   82 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc---chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence            4567888899999999999999999999887532   56689999999999999999999999998753 3467889999


Q ss_pred             HHHHHhc-CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh
Q 013010          211 INALCRV-GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA  289 (451)
Q Consensus       211 i~~~~~~-g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  289 (451)
                      ...+... |++++|...++++...+.. +.+...+..+...+...|           ++++|...++++.+.. +.+...
T Consensus        83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~  149 (225)
T 2vq2_A           83 GWFLCGRLNRPAESMAYFDKALADPTY-PTPYIANLNKGICSAKQG-----------QFGLAEAYLKRSLAAQ-PQFPPA  149 (225)
T ss_dssp             HHHHHTTTCCHHHHHHHHHHHHTSTTC-SCHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHS-TTCHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHcCcCC-cchHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhC-CCCchH
Confidence            9999999 9999999999999883321 234678899999999999           8999999999988753 335778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      +..+...+...|++++|.+.++...+..-..+...+..+...+...|+.+.|..+++.+.+..
T Consensus       150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            889999999999999999999998876421467788888888999999999999999988754

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.50  E-value=3.4e-10  Score=111.65  Aligned_cols=285  Identities=13%  Similarity=0.063  Sum_probs=167.1

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh---
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR----GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE---  181 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~---  181 (451)
                      .++.++|++.|+...+. +   +...+..|...|..    .+++++|.+.|++..+.+     +...+..|...|..   
T Consensus        92 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g  162 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG-----RDSGQQSMGDAYFEGDG  162 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSS
T ss_pred             CCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence            44556666666655542 2   34444555555555    556666666666555544     23344455555544   


Q ss_pred             -cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh---
Q 013010          182 -EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK---  253 (451)
Q Consensus       182 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~---  253 (451)
                       .++.++|.+.|++..+.|   +...+..+...|..    .++.++|.++|++..+.|     +..++..+...|..   
T Consensus       163 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~lg~~y~~g~g  234 (490)
T 2xm6_A          163 VTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----DELGQLHLADMYYFGIG  234 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence             455555555555555532   44455555555554    455555555555554443     23344444444443   


Q ss_pred             -cCCchhhhHHH-------------------------HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-----CC
Q 013010          254 -YGMQTGCRKAI-------------------------RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT-----YR  302 (451)
Q Consensus       254 -~g~~~~~~~~~-------------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----g~  302 (451)
                       .++.+.+.+.+                         .++.++|...|+...+.|   +...+..+-..|...     ++
T Consensus       235 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~  311 (490)
T 2xm6_A          235 VTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKN  311 (490)
T ss_dssp             SCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCC
Confidence             23111111110                         015666777776666543   444555566666665     67


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHH
Q 013010          303 IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN---EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVL  375 (451)
Q Consensus       303 ~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~  375 (451)
                      +++|...|+...+.|   +...+..+-..|...|   +.++|.+.|++..+.+    +...+..|-..|..    .++++
T Consensus       312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~  384 (490)
T 2xm6_A          312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFNLGNALLQGKGVKKDEQ  384 (490)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHH
Confidence            777777777777664   3455666666666655   6777888887777654    35667777777777    67888


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhc
Q 013010          376 EARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       376 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g  423 (451)
                      +|.++|++..+.|   +...+..|-..|..    .++.++|.+.+++..+.|
T Consensus       385 ~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          385 QAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence            8888888887765   45667777777777    788888888888887666

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.50  E-value=5e-10  Score=110.38  Aligned_cols=286  Identities=14%  Similarity=0.099  Sum_probs=192.1

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHc----cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh---
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR----GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE---  181 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~---  181 (451)
                      .++.++|+..|+...+. |   +...+..|...|..    .+++++|.+.|++..+.+     +...+..|-..|..   
T Consensus        56 ~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g  126 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-----LPQAQQNLGVMYHEGNG  126 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSS
T ss_pred             CcCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCC
Confidence            57789999999998764 3   56788889999988    899999999999998876     45567788888888   


Q ss_pred             -cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh---
Q 013010          182 -EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK---  253 (451)
Q Consensus       182 -~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~---  253 (451)
                       .+++++|...|++..+.|   +...+..+...|..    .+++++|.++|++..+.|     +...+..+...|..   
T Consensus       127 ~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-----~~~a~~~Lg~~y~~g~g  198 (490)
T 2xm6_A          127 VKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-----NVWSCNQLGYMYSRGLG  198 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSS
T ss_pred             CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCC
Confidence             889999999999999875   67788888888887    789999999999998875     66788888888887   


Q ss_pred             -cCCchhhhHHHH-------------------------HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCH
Q 013010          254 -YGMQTGCRKAIR-------------------------RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK----TYRI  303 (451)
Q Consensus       254 -~g~~~~~~~~~~-------------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~  303 (451)
                       .++.+.+.+.++                         +++++|...|+...+.|   +...+..+-..|..    .++.
T Consensus       199 ~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~  275 (490)
T 2xm6_A          199 VERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEP  275 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCH
T ss_pred             CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCH
Confidence             663333332211                         13344444444444332   23333334444444    4555


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC---CHH
Q 013010          304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVV-----NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG---RVL  375 (451)
Q Consensus       304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g---~~~  375 (451)
                      ++|.+.|+...+.|   +...+..+-..|...     ++.++|...|++..+.+    +...+..+-..|...|   +.+
T Consensus       276 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~y~~~g~~~~~~  348 (490)
T 2xm6_A          276 LKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG----DATAQANLGAIYFRLGSEEEHK  348 (490)
T ss_dssp             HHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHSCCHHHHH
T ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC----CHHHHHHHHHHHHhCCCcccHH
Confidence            55555555555443   334444455555554     56666666666665543    2344455555555544   566


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCCchHHHHHHHHHHhch
Q 013010          376 EARDFLAELVDGGSVPREYTYKLVCDALNA----AEEPSLLDDGLRKRIRDGI  424 (451)
Q Consensus       376 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~  424 (451)
                      +|.++|++..+.|   +...+..|-..|..    .++.+.|.+.+++..+.|.
T Consensus       349 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~  398 (490)
T 2xm6_A          349 KAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL  398 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC
Confidence            6666666666653   45566666666666    6677777777777666554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=9.7e-12  Score=112.17  Aligned_cols=236  Identities=9%  Similarity=-0.078  Sum_probs=162.8

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYNVV  210 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l  210 (451)
                      ..+......+...|++++|...++...+....   +...+..+...|...|++++|...|++..+.+-.+  ...+|..+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY   80 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence            34555667777888888888888888776532   34467777778888888888888888887733112  23347777


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY  290 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  290 (451)
                      ...+...|++++|.+.|++..+..   +.+..++..+...|...|           ++++|...|++..+. .+.+...+
T Consensus        81 g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~-~~~~~~~~  145 (272)
T 3u4t_A           81 GKILMKKGQDSLAIQQYQAAVDRD---TTRLDMYGQIGSYFYNKG-----------NFPLAIQYMEKQIRP-TTTDPKVF  145 (272)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHHHHHHHHTT-----------CHHHHHHHHGGGCCS-SCCCHHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcC---cccHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHhhc-CCCcHHHH
Confidence            788888888888888888877654   245577888888888888           778888888777654 12344555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCCh------hhH
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE---IDKAIEMMRKMQNLNHGVPTS------SSY  361 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~~~p~~------~~~  361 (451)
                      ..+...+...+++++|.+.|+...+.. +.+...+..+...+...|+   .++|...+++..+.....|+.      ..|
T Consensus       146 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  224 (272)
T 3u4t_A          146 YELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEAN  224 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence            555524444558888888888877652 2246666777777777777   777777777766543212332      466


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          362 TPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       362 ~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      ..+...|...|++++|.+.+++..+.
T Consensus       225 ~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          225 EYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            67777788888888888888887764

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.48  E-value=1.8e-12  Score=117.02  Aligned_cols=250  Identities=12%  Similarity=-0.014  Sum_probs=192.8

Q ss_pred             HccCChhHHHHHHHHHHHcCCCC-CccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010          143 ARGNNVKGLWDFLKDMSRRGNGE-LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN  221 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  221 (451)
                      ...|++++|...++.+.+..... +.+..+|..+...+...|++++|...|++..+.. +.+..+|..+...|...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            44689999999999998874322 2357789999999999999999999999998854 346899999999999999999


Q ss_pred             HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010          222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY  301 (451)
Q Consensus       222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  301 (451)
                      +|.+.|++.....   +.+..++..+...|.+.|           ++++|...|+++.+.  .|+.......+..+...|
T Consensus        95 ~A~~~~~~al~~~---~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~  158 (275)
T 1xnf_A           95 AAYEAFDSVLELD---PTYNYAHLNRGIALYYGG-----------RDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKL  158 (275)
T ss_dssp             HHHHHHHHHHHHC---TTCTHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---ccccHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhc
Confidence            9999999998865   346789999999999999           899999999999875  455555555666667889


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CChhhHHHHHHHHHHcCCHHHHHH
Q 013010          302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-V-PTSSSYTPIIHALCEAGRVLEARD  379 (451)
Q Consensus       302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~-p~~~~~~~li~~~~~~g~~~~A~~  379 (451)
                      ++++|...++...... +++...+. +...+...++.++|...+.+....... . .+...+..+...|.+.|++++|.+
T Consensus       159 ~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  236 (275)
T 1xnf_A          159 DEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA  236 (275)
T ss_dssp             CHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999998877652 33444444 677778888899999999988764310 0 115788889999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHH
Q 013010          380 FLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDG  415 (451)
Q Consensus       380 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~  415 (451)
                      .|++..+..  |+.  +.....++...|+++++.+.
T Consensus       237 ~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~  268 (275)
T 1xnf_A          237 LFKLAVANN--VHN--FVEHRYALLELSLLGQDQDD  268 (275)
T ss_dssp             HHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHH
Confidence            999998754  432  22224455666666655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.48  E-value=3.8e-12  Score=112.66  Aligned_cols=202  Identities=13%  Similarity=0.045  Sum_probs=117.7

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...|..+...+...|++++|...+++..+...   .+...+..+...+...|++++|.+.|++..+.. +.+..++..+
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l   97 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK---EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA   97 (243)
T ss_dssp             --------------------CCTTHHHHHTTCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence            445566666677777777777777777766542   245566777777777777777777777776642 2356666777


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY  290 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  290 (451)
                      ...|...|++++|.+.++++.+..   +.+...+..+...+.+.|           ++++|...+++..+.. +.+...+
T Consensus        98 a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~  162 (243)
T 2q7f_A           98 GNVYVVKEMYKEAKDMFEKALRAG---MENGDLFYMLGTVLVKLE-----------QPKLALPYLQRAVELN-ENDTEAR  162 (243)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHT---CCSHHHHHHHHHHHHHTS-----------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHhC-CccHHHH
Confidence            777777777777777777766654   245666667777777777           6667777776666542 2345556


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      ..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|.+.++++.+..
T Consensus       163 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          163 FQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            666666666677777766666665542 2245566666666666666666666666666543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.47  E-value=5.3e-12  Score=111.72  Aligned_cols=202  Identities=13%  Similarity=0.058  Sum_probs=138.0

Q ss_pred             ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010          167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI  246 (451)
Q Consensus       167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~  246 (451)
                      .+...|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.....   +.+..++..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~   96 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD---SSAATAYYG   96 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CcchHHHHH
Confidence            345567777778888888888888888887743 3467778888888888888888888888887664   246777888


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010          247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN  326 (451)
Q Consensus       247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  326 (451)
                      +...|...|           ++++|...+++..+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+.
T Consensus        97 la~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  163 (243)
T 2q7f_A           97 AGNVYVVKE-----------MYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARF  163 (243)
T ss_dssp             HHHHHHHTT-----------CHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHhc-----------cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHH
Confidence            888888888           7888888888777653 3356677777788888888888888888877652 23567777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          327 SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       327 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      .+...|...|++++|...++++.+..  +.+..++..+...|...|++++|.+.+++..+.
T Consensus       164 ~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          164 QFGMCLANEGMLDEALSQFAAVTEQD--PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            77888888888888888888877765  455667777788888888888888888877764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.46  E-value=2.5e-11  Score=109.39  Aligned_cols=239  Identities=12%  Similarity=0.055  Sum_probs=188.5

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV  185 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~  185 (451)
                      +...+++++|+..|+...+.  .+.+...+..+...+...|++++|...++...+....+.....+|..+...+...|++
T Consensus        13 ~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~   90 (272)
T 3u4t_A           13 LFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQD   90 (272)
T ss_dssp             HHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccH
Confidence            45577899999999999864  3345568888999999999999999999999885433333455689999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010          186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR  265 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~  265 (451)
                      ++|...|++..+.. +.+..+|..+...|...|++++|...|++..+..   +.+..++..+...+...+          
T Consensus        91 ~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~l~~~~~~~~----------  156 (272)
T 3u4t_A           91 SLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT---TTDPKVFYELGQAYYYNK----------  156 (272)
T ss_dssp             HHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS---CCCHHHHHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHHH----------
Confidence            99999999998853 3467899999999999999999999999998774   357777877773444555          


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhc
Q 013010          266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR---IERALELFDDMNKKG-CIPN------RVTYNSFIRYYSVV  335 (451)
Q Consensus       266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~t~~~li~~~~~~  335 (451)
                       ++++|...|++..+.. +.+...+..+..++...|+   +++|...+++..+.. -.|+      ..+|..+-..|...
T Consensus       157 -~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  234 (272)
T 3u4t_A          157 -EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTIN  234 (272)
T ss_dssp             -CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHc
Confidence             7899999999988753 2346677778888888888   888888888876541 1233      25788888999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          336 NEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       336 g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      |++++|.+.|++..+..  +-+......+
T Consensus       235 ~~~~~A~~~~~~al~~~--p~~~~a~~~l  261 (272)
T 3u4t_A          235 RDKVKADAAWKNILALD--PTNKKAIDGL  261 (272)
T ss_dssp             TCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcC--ccHHHHHHHh
Confidence            99999999999999876  3444444443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.43  E-value=4.6e-11  Score=113.30  Aligned_cols=248  Identities=8%  Similarity=0.010  Sum_probs=200.6

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL-VNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      ...|..+...+.+.|++++|...+++..+.+..   +..+|+.+...+...|+ +++|+..|++..+.. +-+...|+.+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~---~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~  172 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHR  172 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc---CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence            456777888889999999999999999988633   67789999999999997 999999999999854 3368899999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY  290 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  290 (451)
                      ..++...|++++|+..|+++....   +-+..+|..+..++.+.|           ++++|+..|+++.+.. +-+...|
T Consensus       173 g~~~~~~g~~~eAl~~~~kal~ld---P~~~~a~~~lg~~~~~~g-----------~~~eAl~~~~~al~l~-P~~~~a~  237 (382)
T 2h6f_A          173 RVLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFK-----------LWDNELQYVDQLLKED-VRNNSVW  237 (382)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT-----------CCTTHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC---ccCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhC-CCCHHHH
Confidence            999999999999999999999876   358899999999999999           8889999999998763 3367888


Q ss_pred             HHHHHHHHh-cCCHHHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCChhhH
Q 013010          291 NCLIDGCCK-TYRIERA-----LELFDDMNKKGCIP-NRVTYNSFIRYYSVVN--EIDKAIEMMRKMQNLNHGVPTSSSY  361 (451)
Q Consensus       291 ~~li~~~~~-~g~~~~a-----~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~~p~~~~~  361 (451)
                      +.+..++.. .|..++|     .+.++...+.  .| +...|+.+...|...|  ++++|++.+.++ +..  ..+...+
T Consensus       238 ~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~--p~~~~al  312 (382)
T 2h6f_A          238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS--HSSPYLI  312 (382)
T ss_dssp             HHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT--CCCHHHH
T ss_pred             HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC--CCCHHHH
Confidence            999999988 6665777     4778887765  35 5778888888888888  689999999888 433  5667788


Q ss_pred             HHHHHHHHHcC---------CHHHHHHHHHHH-HhCCCCCC-HHHHHHHHHHHHh
Q 013010          362 TPIIHALCEAG---------RVLEARDFLAEL-VDGGSVPR-EYTYKLVCDALNA  405 (451)
Q Consensus       362 ~~li~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~-~~t~~~li~~~~~  405 (451)
                      ..+...|.+.|         .+++|.++|+++ .+  +.|. ..-|..+...+..
T Consensus       313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHH
Confidence            88999998874         358999999998 55  3344 4455555555543

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.42  E-value=1.3e-11  Score=117.91  Aligned_cols=288  Identities=14%  Similarity=0.029  Sum_probs=210.3

Q ss_pred             CCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-C
Q 013010          130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQF----RCRP-D  203 (451)
Q Consensus       130 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~  203 (451)
                      .....+......+...|++++|...|++..+.+..... ...+|..+...|...|++++|...|++..+.    +-.| .
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            34556677788899999999999999999887532111 1357888999999999999999999987542    2122 2


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---CCCHHHHHHHHHHHHhcCC-------------chhhhHHHHHH
Q 013010          204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRC---PPDVYTYTILISSYCKYGM-------------QTGCRKAIRRR  267 (451)
Q Consensus       204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~p~~~~~~~li~~~~~~g~-------------~~~~~~~~~~~  267 (451)
                      ..++..+...|...|++++|...+++........   .....++..+...|...|+             .+.+..    .
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~----~  162 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRD----A  162 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHH----H
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHH----H
Confidence            5678888889999999999999998876532100   0124578888888988883             111111    1


Q ss_pred             HHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 013010          268 IWEANHLFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNE  337 (451)
Q Consensus       268 ~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~  337 (451)
                      +++|...+.+....    +..+ ...++..+...|...|++++|.+.+++..+.    +..+ ...++..+...|...|+
T Consensus       163 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          163 LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            77777777765432    2111 2456888888999999999999999987643    1111 13478888899999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCC
Q 013010          338 IDKAIEMMRKMQNLNHGVPT----SSSYTPIIHALCEAGRVLEARDFLAELVDG----GSVP-REYTYKLVCDALNAAEE  408 (451)
Q Consensus       338 ~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~  408 (451)
                      +++|...+++........++    ..++..+...|...|++++|.+.+++..+.    +-.+ ...++..+...|...|+
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  322 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN  322 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            99999999987754311111    557888889999999999999999988743    2111 15678889999999999


Q ss_pred             CchHHHHHHHHHH
Q 013010          409 PSLLDDGLRKRIR  421 (451)
Q Consensus       409 ~~~a~~~~~~~~~  421 (451)
                      ++.|.+.+++.++
T Consensus       323 ~~~A~~~~~~al~  335 (406)
T 3sf4_A          323 HDQAMHFAEKHLE  335 (406)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998774

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.41  E-value=1e-11  Score=119.33  Aligned_cols=285  Identities=12%  Similarity=0.022  Sum_probs=209.2

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQF----R-CRPDVYA  206 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~  206 (451)
                      ..+..+...+...|++++|...+++..+.+..... ....|..+...|...|++++|...|++..+.    + ......+
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            34555677888999999999999999887533110 1257888999999999999999999988653    1 1224567


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhCCCC---CCCCHHHHHHHHHHHHhcCC----------chhhhHHHHHHHHHHHH
Q 013010          207 YNVVINALCRVGNFNKARFLLEQMELPGFR---CPPDVYTYTILISSYCKYGM----------QTGCRKAIRRRIWEANH  273 (451)
Q Consensus       207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---~~p~~~~~~~li~~~~~~g~----------~~~~~~~~~~~~~~a~~  273 (451)
                      +..+...|...|++++|...+++.......   .+....++..+...|...|+          .+.+..    .+++|..
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~----~~~~A~~  204 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE----ALTRAVE  204 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH----HHHHHHH
Confidence            888889999999999999999887654100   01245578888889998883          111111    1777777


Q ss_pred             HHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHH
Q 013010          274 LFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGC-IPN----RVTYNSFIRYYSVVNEIDKAIE  343 (451)
Q Consensus       274 ~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~t~~~li~~~~~~g~~~~A~~  343 (451)
                      .+++..+.    +-.+ ...++..+...|...|++++|.+.+++..+..- .++    ..++..+...|...|++++|..
T Consensus       205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  284 (411)
T 4a1s_A          205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE  284 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence            77765431    1111 235788888999999999999999998765311 012    3478888999999999999999


Q ss_pred             HHHHHHhcCCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCCchHHH
Q 013010          344 MMRKMQNLNHGV----PTSSSYTPIIHALCEAGRVLEARDFLAELVDG----GSV-PREYTYKLVCDALNAAEEPSLLDD  414 (451)
Q Consensus       344 ~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~a~~  414 (451)
                      .+++........    ....++..+...|...|++++|.+++++..+.    +.. ....++..+...|...|+++.|.+
T Consensus       285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  364 (411)
T 4a1s_A          285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALK  364 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            999877643211    12567888889999999999999999988743    111 124578889999999999999999


Q ss_pred             HHHHHHH
Q 013010          415 GLRKRIR  421 (451)
Q Consensus       415 ~~~~~~~  421 (451)
                      .+++.++
T Consensus       365 ~~~~al~  371 (411)
T 4a1s_A          365 YAEQHLQ  371 (411)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999874

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.40  E-value=2.1e-11  Score=112.95  Aligned_cols=283  Identities=14%  Similarity=0.038  Sum_probs=204.6

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc-cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC-CCHHHH
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV-TTSSVTCLIKVLGEEGLVNEALATFYRMKQF----RCR-PDVYAY  207 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~  207 (451)
                      .+......+...|++++|...+++..+....... ....+..+...|...|++++|.+.+++..+.    +-. ....++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            3445567788899999999999999887532110 1467888899999999999999999887542    111 235678


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCC-------------chhhhHHHHHHHHH
Q 013010          208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYTYTILISSYCKYGM-------------QTGCRKAIRRRIWE  270 (451)
Q Consensus       208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~----~~~~~~li~~~~~~g~-------------~~~~~~~~~~~~~~  270 (451)
                      ..+...|...|++++|...+++....... .++    ..++..+...|...|+             .+.+.+    .+++
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~  161 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRE-LNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRN----ALQA  161 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHH----HHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHH-hcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHH----HHHH
Confidence            88888999999999999999887543211 012    4478888888888883             111111    1777


Q ss_pred             HHHHHHHHHhc----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHH
Q 013010          271 ANHLFRLMLFK----GFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDK  340 (451)
Q Consensus       271 a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~  340 (451)
                      |...+++....    +.. ....++..+...+...|++++|.+.+++..+.    +..+ ...++..+...|...|++++
T Consensus       162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  241 (338)
T 3ro2_A          162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  241 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence            77777665431    111 12456788888999999999999999987643    1111 23478888889999999999


Q ss_pred             HHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCCch
Q 013010          341 AIEMMRKMQNLNHGVPT----SSSYTPIIHALCEAGRVLEARDFLAELVDG----GSV-PREYTYKLVCDALNAAEEPSL  411 (451)
Q Consensus       341 A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~t~~~li~~~~~~g~~~~  411 (451)
                      |...+++.........+    ..++..+...|...|++++|...+++..+.    +-. ....++..+...+.+.|+++.
T Consensus       242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  321 (338)
T 3ro2_A          242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ  321 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99999987754311111    557788888999999999999999988643    111 124578889999999999999


Q ss_pred             HHHHHHHHHH
Q 013010          412 LDDGLRKRIR  421 (451)
Q Consensus       412 a~~~~~~~~~  421 (451)
                      |.+.+++.++
T Consensus       322 A~~~~~~a~~  331 (338)
T 3ro2_A          322 AMHFAEKHLE  331 (338)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999888764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.36  E-value=3.1e-11  Score=115.32  Aligned_cols=294  Identities=14%  Similarity=0.050  Sum_probs=216.1

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHH
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHN----EMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLI  176 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li  176 (451)
                      ..+...+++++|+..|+......  +.+    ...+..+...+...|++++|...+++.....   ..++....++..+.
T Consensus        17 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la   94 (406)
T 3sf4_A           17 ERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   94 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            34566788999999999998751  223    3578889999999999999999998865431   12223466788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHhh
Q 013010          177 KVLGEEGLVNEALATFYRMKQFRC-RPD----VYAYNVVINALCRVGN--------------------FNKARFLLEQME  231 (451)
Q Consensus       177 ~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~  231 (451)
                      ..|...|++++|...+++..+..- .++    ..++..+...|...|+                    +++|...+.+..
T Consensus        95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  174 (406)
T 3sf4_A           95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL  174 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999998865310 012    4578888899999999                    999999988764


Q ss_pred             hC----CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHhcCC
Q 013010          232 LP----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFV-PDVVAYNCLIDGCCKTYR  302 (451)
Q Consensus       232 ~~----g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~  302 (451)
                      ..    +.. +....++..+...|...|           ++++|...+++..+.    +.. ....++..+...|...|+
T Consensus       175 ~~~~~~~~~-~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  242 (406)
T 3sf4_A          175 SLVTALGDR-AAQGRAFGNLGNTHYLLG-----------NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE  242 (406)
T ss_dssp             HHHHHTTCH-HHHHHHHHHHHHHHHHHT-----------BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhccCc-HHHHHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            42    211 123457888899999999           777777777766542    111 113478888899999999


Q ss_pred             HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCC
Q 013010          303 IERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----SSSYTPIIHALCEAGR  373 (451)
Q Consensus       303 ~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~  373 (451)
                      +++|...+++..+.    +..+ ...++..+...|...|++++|...+++..+......+    ..++..+...|...|+
T Consensus       243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~  322 (406)
T 3sf4_A          243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN  322 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence            99999999987643    2111 1567888899999999999999999987764321122    5578888889999999


Q ss_pred             HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCCch
Q 013010          374 VLEARDFLAELVDG----GSVP-REYTYKLVCDALNAAEEPSL  411 (451)
Q Consensus       374 ~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~  411 (451)
                      +++|.+.+++..+.    +..+ ...++..+...+...|+...
T Consensus       323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            99999999887642    2222 25577788888888887643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.35  E-value=5.8e-11  Score=108.97  Aligned_cols=241  Identities=13%  Similarity=0.002  Sum_probs=154.5

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC------C
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQF-------RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP------G  234 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g  234 (451)
                      +..++..+...+...|++++|..+|+++.+.       .......++..+...|...|++++|...+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4455666666666777777777777666552       12233556666777777777777777777766543      2


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc------CC-CCCHhhHHHHHHHHHhcCCHHHHH
Q 013010          235 FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK------GF-VPDVVAYNCLIDGCCKTYRIERAL  307 (451)
Q Consensus       235 ~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~  307 (451)
                      . .+....++..+...|...|           ++++|...+++..+.      +- ......+..+...+...|++++|.
T Consensus       106 ~-~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  173 (311)
T 3nf1_A          106 D-HPAVAATLNNLAVLYGKRG-----------KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE  173 (311)
T ss_dssp             T-CHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             C-ChHHHHHHHHHHHHHHHcC-----------cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            1 1235677889999999999           777777777766543      22 224567888889999999999999


Q ss_pred             HHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCCChhhHHHHHH-------H
Q 013010          308 ELFDDMNKK------GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH------GVPTSSSYTPIIH-------A  367 (451)
Q Consensus       308 ~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~------~~p~~~~~~~li~-------~  367 (451)
                      +.+++..+.      +..| ...++..+...|...|++++|.+.++++.+...      ..+..........       .
T Consensus       174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
T 3nf1_A          174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK  253 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence            999998764      2233 356788899999999999999999999886310      0122222222222       2


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          368 LCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       368 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      +...+.+.+|...+...... ......++..+..+|.+.|++++|.+.+++.++
T Consensus       254 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          254 QKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ----CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            23334444555555555432 123456788899999999999999999888764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.34  E-value=9.3e-10  Score=101.47  Aligned_cols=218  Identities=10%  Similarity=0.011  Sum_probs=166.5

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH-------ccCCh-------hHHHHHHHHHHHc-CCCCCccHHhHHHHHH
Q 013010          113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFA-------RGNNV-------KGLWDFLKDMSRR-GNGELVTTSSVTCLIK  177 (451)
Q Consensus       113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~-------~~g~~-------~~a~~~~~~m~~~-~~~~~~~~~~~~~li~  177 (451)
                      ++|+..|+.....  .+.+...|..++..+.       +.|++       ++|..+|++..+. ..   .+...|..+..
T Consensus        33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~  107 (308)
T 2ond_A           33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYAD  107 (308)
T ss_dssp             HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc---ccHHHHHHHHH
Confidence            6888999998864  3556778888887775       35886       8999999998883 32   25667889999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCC-HH-HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH-hc
Q 013010          178 VLGEEGLVNEALATFYRMKQFRCRPD-VY-AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC-KY  254 (451)
Q Consensus       178 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~-~~  254 (451)
                      .+.+.|++++|.++|++..+.  .|+ .. +|..+...+.+.|++++|.++|++..+..   +++...|........ ..
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~a~~~~~~~  182 (308)
T 2ond_A          108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA---RTRHHVYVTAALMEYYCS  182 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---TCCTHHHHHHHHHHHHTS
T ss_pred             HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHc
Confidence            999999999999999999873  454 33 78888999999999999999999988764   244455543333322 25


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHH
Q 013010          255 GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-CIP--NRVTYNSFIRY  331 (451)
Q Consensus       255 g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~t~~~li~~  331 (451)
                      |           ++++|..+|+...+.. +-+...|..++..+.+.|++++|..+|+...... ..|  ....|..++..
T Consensus       183 ~-----------~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~  250 (308)
T 2ond_A          183 K-----------DKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF  250 (308)
T ss_dssp             C-----------CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred             C-----------CHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence            6           7888888888877642 3356778888888888899999999999888763 455  46678888888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcC
Q 013010          332 YSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       332 ~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      +.+.|+.+.|..+++++.+..
T Consensus       251 ~~~~g~~~~a~~~~~~a~~~~  271 (308)
T 2ond_A          251 ESNIGDLASILKVEKRRFTAF  271 (308)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHHc
Confidence            888899999998888888765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=1.3e-09  Score=106.53  Aligned_cols=302  Identities=12%  Similarity=-0.012  Sum_probs=212.8

Q ss_pred             CCchhhhcCHHHHHHHHHHHhhc----C---CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC-----CCCCccHH
Q 013010          103 RDPQKVTLGLNKATEFYHWVERF----F---DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-----NGELVTTS  170 (451)
Q Consensus       103 ~~~~~~~~~~~~A~~~f~~~~~~----~---~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~  170 (451)
                      +..+...|+.++|++.|+...+.    .   ..+....+|+.+..+|...|++++|...+++..+..     ........
T Consensus        58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~  137 (472)
T 4g1t_A           58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE  137 (472)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence            34466678889999988876541    1   123345689999999999999999999998876531     11112345


Q ss_pred             hHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHH---HHhcCChHHHHHHHHHhhhCCCCCCCCHHHH
Q 013010          171 SVTCLIKVLGEE--GLVNEALATFYRMKQFRCRPD-VYAYNVVINA---LCRVGNFNKARFLLEQMELPGFRCPPDVYTY  244 (451)
Q Consensus       171 ~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~---~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~  244 (451)
                      +++.+..++...  +++++|.+.|++..+.  .|+ ...+..+..+   +...++.++|++.+++..+..   |.+..++
T Consensus       138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~---p~~~~~~  212 (472)
T 4g1t_A          138 LDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN---PDNQYLK  212 (472)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC---SSCHHHH
T ss_pred             HHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC---CcchHHH
Confidence            666666566554  5799999999999874  354 4455444444   445678889999998887764   3567777


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHH
Q 013010          245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRV  323 (451)
Q Consensus       245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~  323 (451)
                      ..+...+...+...+       ++++|.+.+++..... +.+..++..+...|...|++++|.+.+++..+.  .| +..
T Consensus       213 ~~l~~~~~~~~~~~~-------~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~  282 (472)
T 4g1t_A          213 VLLALKLHKMREEGE-------EEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAY  282 (472)
T ss_dssp             HHHHHHHHHCC-------------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHH
T ss_pred             HHHHHHHHHHHhhhh-------HHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHH
Confidence            777777776653322       6778999998887653 446678888999999999999999999998876  34 466


Q ss_pred             HHHHHHHHHHhc-------------------CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          324 TYNSFIRYYSVV-------------------NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       324 t~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      ++..+-..|...                   +..+.|...+++..+..  +.+...+..+...|...|++++|.+.|++.
T Consensus       283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence            666665555332                   34677888888888766  566778899999999999999999999999


Q ss_pred             HhCCCCCCHH--HHHHHHH-HHHhcCCCchHHHHHHHHHH
Q 013010          385 VDGGSVPREY--TYKLVCD-ALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       385 ~~~g~~p~~~--t~~~li~-~~~~~g~~~~a~~~~~~~~~  421 (451)
                      ++....+...  .+..+.. .+...|+.+.|.+.+.+.++
T Consensus       361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~  400 (472)
T 4g1t_A          361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK  400 (472)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            8765443321  2222222 24567888888888887764

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.34  E-value=5.7e-11  Score=114.03  Aligned_cols=270  Identities=14%  Similarity=0.031  Sum_probs=201.8

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHH
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNE----MTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLI  176 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li  176 (451)
                      ..+...+++++|+..|+...+.  .+.+.    ..+..+...+...|++++|...+++..+..   ........++..+.
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  133 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG  133 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            3456678899999999999875  12232    478889999999999999999998876541   11223567788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHHhcCC-----------------hHHHHHHHHHhhhC-
Q 013010          177 KVLGEEGLVNEALATFYRMKQF----R-CRPDVYAYNVVINALCRVGN-----------------FNKARFLLEQMELP-  233 (451)
Q Consensus       177 ~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------~~~a~~~~~~m~~~-  233 (451)
                      ..|...|++++|...|++..+.    + ......++..+...|...|+                 +++|...+++.... 
T Consensus       134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~  213 (411)
T 4a1s_A          134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM  213 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988663    1 12235678888899999999                 99999998876442 


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC-CCC----HhhHHHHHHHHHhcCCHHH
Q 013010          234 ---GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF-VPD----VVAYNCLIDGCCKTYRIER  305 (451)
Q Consensus       234 ---g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~li~~~~~~g~~~~  305 (451)
                         +.. +....++..+...|...|           ++++|...+++..+..- ..+    ..++..+...|...|++++
T Consensus       214 ~~~~~~-~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  281 (411)
T 4a1s_A          214 RDLGDR-GAQGRACGNLGNTYYLLG-----------DFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED  281 (411)
T ss_dssp             HHHTCH-HHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHcCCH-HHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence               110 123457888999999999           77777777776654210 011    2378888999999999999


Q ss_pred             HHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCChhhHHHHHHHHHHcCCHHH
Q 013010          306 ALELFDDMNKKG----CI-PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG----VPTSSSYTPIIHALCEAGRVLE  376 (451)
Q Consensus       306 a~~~~~~m~~~g----~~-p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~~~  376 (451)
                      |.+.+++..+..    .. ....++..+...|...|++++|...+++.......    .....++..+...|...|++++
T Consensus       282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  361 (411)
T 4a1s_A          282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER  361 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence            999999876531    11 12567888899999999999999999987764211    1124478888899999999999


Q ss_pred             HHHHHHHHHhC
Q 013010          377 ARDFLAELVDG  387 (451)
Q Consensus       377 A~~l~~~m~~~  387 (451)
                      |.+++++..+.
T Consensus       362 A~~~~~~al~~  372 (411)
T 4a1s_A          362 ALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.34  E-value=1.9e-10  Score=109.14  Aligned_cols=246  Identities=7%  Similarity=-0.035  Sum_probs=193.6

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCC-hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN-VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG  183 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g  183 (451)
                      .+...+..++|+..|+.+...  -+-+...|+.+..++...|+ +++|...+++..+.+..   +...|+.+..++...|
T Consensus       106 ~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~---~~~a~~~~g~~~~~~g  180 (382)
T 2h6f_A          106 VLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK---NYQVWHHRRVLVEWLR  180 (382)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHT
T ss_pred             HHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcc
Confidence            355567789999999999864  34467789999999999996 99999999999998643   6778999999999999


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh-cCCchhhhH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK-YGMQTGCRK  262 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~-~g~~~~~~~  262 (451)
                      ++++|+..|+++.+.. +-+...|..+..++...|++++|+..|+++.+..   +-+...|+.+...+.+ .|..+.+  
T Consensus       181 ~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~---P~~~~a~~~lg~~l~~l~~~~~eA--  254 (382)
T 2h6f_A          181 DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED---VRNNSVWNQRYFVISNTTGYNDRA--  254 (382)
T ss_dssp             CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCSCSHH--
T ss_pred             CHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCcchHH--
Confidence            9999999999999854 3478899999999999999999999999999876   3488999999999999 5522222  


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----
Q 013010          263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY--RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN----  336 (451)
Q Consensus       263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g----  336 (451)
                          .++.++..|++..+.. +-+...|+.+...+...|  ++++|.+.+.++ +. ...+...+..+...|.+.|    
T Consensus       255 ----~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~  327 (382)
T 2h6f_A          255 ----VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC  327 (382)
T ss_dssp             ----HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred             ----HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence                1233467787777642 335678888888888888  689999999888 33 2346788889999998874    


Q ss_pred             -----CHHHHHHHHHHH-HhcCCCCCChhhHHHHHHHHHH
Q 013010          337 -----EIDKAIEMMRKM-QNLNHGVPTSSSYTPIIHALCE  370 (451)
Q Consensus       337 -----~~~~A~~~~~~m-~~~~~~~p~~~~~~~li~~~~~  370 (451)
                           ..++|.++++++ .+..  +-....|..+...+..
T Consensus       328 ~~~~~~~~~A~~~~~~l~~~~D--P~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          328 DNKEDILNKALELCEILAKEKD--TIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             SSHHHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHH
Confidence                 369999999999 6654  3444566666655543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.33  E-value=6.6e-11  Score=109.57  Aligned_cols=269  Identities=14%  Similarity=0.071  Sum_probs=199.3

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHH
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHN----EMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIK  177 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~  177 (451)
                      .+...+++++|+..|+.+.+..  +.+    ...+..+...+...|++++|.+.+++.....   ..+.....++..+..
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           14 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            3556788999999999998751  223    3678889999999999999999998865431   112234667888999


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHHHHHHHHHhcCC--------------------hHHHHHHHHHhhh
Q 013010          178 VLGEEGLVNEALATFYRMKQFRC-RPD----VYAYNVVINALCRVGN--------------------FNKARFLLEQMEL  232 (451)
Q Consensus       178 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~  232 (451)
                      .|...|++++|...+++..+..- .++    ..++..+...|...|+                    +++|...+++...
T Consensus        92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~  171 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLS  171 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999998765210 112    4478888889999999                    9999999887643


Q ss_pred             C----CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CC-CCCHhhHHHHHHHHHhcCCH
Q 013010          233 P----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GF-VPDVVAYNCLIDGCCKTYRI  303 (451)
Q Consensus       233 ~----g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~li~~~~~~g~~  303 (451)
                      .    +.. +....++..+...|...|           ++++|...+++..+.    +. .....++..+...+...|++
T Consensus       172 ~~~~~~~~-~~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  239 (338)
T 3ro2_A          172 LVTALGDR-AAQGRAFGNLGNTHYLLG-----------NFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF  239 (338)
T ss_dssp             HHHHHTCH-HHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHhcCCH-HHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCH
Confidence            2    110 123457888889999999           777777777765532    11 11234788888999999999


Q ss_pred             HHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCChhhHHHHHHHHHHcCCH
Q 013010          304 ERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG----VPTSSSYTPIIHALCEAGRV  374 (451)
Q Consensus       304 ~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~----~p~~~~~~~li~~~~~~g~~  374 (451)
                      ++|...+++..+.    +..+ ...++..+...|...|++++|...+++.......    .....++..+...|.+.|++
T Consensus       240 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  319 (338)
T 3ro2_A          240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH  319 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence            9999999987643    1111 1567788888999999999999999987654211    11244778888999999999


Q ss_pred             HHHHHHHHHHHhC
Q 013010          375 LEARDFLAELVDG  387 (451)
Q Consensus       375 ~~A~~l~~~m~~~  387 (451)
                      ++|.+.+++..+.
T Consensus       320 ~~A~~~~~~a~~~  332 (338)
T 3ro2_A          320 DQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.33  E-value=2.3e-09  Score=98.76  Aligned_cols=218  Identities=11%  Similarity=-0.010  Sum_probs=165.1

Q ss_pred             hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHhhCCCCC-CHHHHHHHHHH
Q 013010          149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-------EGLV-------NEALATFYRMKQFRCRP-DVYAYNVVINA  213 (451)
Q Consensus       149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p-~~~~~~~li~~  213 (451)
                      ++|..+|++......   .+...|..+...+..       .|++       ++|..+|++..+. +.| +...|..+...
T Consensus        33 ~~a~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~  108 (308)
T 2ond_A           33 KRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADY  108 (308)
T ss_dssp             HHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHH
Confidence            678888988888642   266678887777653       4775       8999999999873 234 56689999999


Q ss_pred             HHhcCChHHHHHHHHHhhhCCCCCCCC-HH-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 013010          214 LCRVGNFNKARFLLEQMELPGFRCPPD-VY-TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN  291 (451)
Q Consensus       214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~-~~-~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  291 (451)
                      +.+.|++++|..+|++..+..    |+ .. +|..+...+.+.|           ++++|..+|++..+.. +.+...|.
T Consensus       109 ~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~a~~~~-p~~~~~~~  172 (308)
T 2ond_A          109 EESRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRAE-----------GIKSGRMIFKKAREDA-RTRHHVYV  172 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTSS----SSCTHHHHHHHHHHHHHHH-----------CHHHHHHHHHHHHTST-TCCTHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHhcc----ccCccHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhcC-CCCHHHHH
Confidence            999999999999999998754    43 33 7888888888888           8889999999888753 23334443


Q ss_pred             HHHHHHH-hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHH
Q 013010          292 CLIDGCC-KTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP--TSSSYTPIIHAL  368 (451)
Q Consensus       292 ~li~~~~-~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~  368 (451)
                      ....... ..|++++|.++|+...+.. +-+...|..++..+.+.|++++|..+|++........|  ....|..++..+
T Consensus       173 ~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~  251 (308)
T 2ond_A          173 TAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFE  251 (308)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence            3332222 3689999999999887652 22678888888889999999999999999988642134  356788888888


Q ss_pred             HHcCCHHHHHHHHHHHHhC
Q 013010          369 CEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       369 ~~~g~~~~A~~l~~~m~~~  387 (451)
                      .+.|+.++|..+++++.+.
T Consensus       252 ~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          252 SNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHSCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            8899999999999888764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=5.1e-09  Score=104.25  Aligned_cols=200  Identities=10%  Similarity=0.033  Sum_probs=132.8

Q ss_pred             HHHHHHHHHHHHh-------cCChH-------HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 013010          204 VYAYNVVINALCR-------VGNFN-------KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW  269 (451)
Q Consensus       204 ~~~~~~li~~~~~-------~g~~~-------~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~  269 (451)
                      ...|......+.+       .|+++       +|..+|++..+.-  .|.+...|..++..+.+.|           +++
T Consensus       272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~--~p~~~~l~~~~~~~~~~~g-----------~~~  338 (530)
T 2ooe_A          272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL--LKKNMLLYFAYADYEESRM-----------KYE  338 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT--CSSCHHHHHHHHHHHHHTT-----------CHH
T ss_pred             HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHhcC-----------CHH
Confidence            4444444444443       46665       6777777766421  1235666777777777777           778


Q ss_pred             HHHHHHHHHHhcCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHH
Q 013010          270 EANHLFRLMLFKGFVPDV--VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR-YYSVVNEIDKAIEMMR  346 (451)
Q Consensus       270 ~a~~~~~~m~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~~~~  346 (451)
                      +|..+|++..+.  .|+.  ..|...+..+.+.|++++|.++|+...+.. +.+...|..... .+...|+.++|..+|+
T Consensus       339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e  415 (530)
T 2ooe_A          339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE  415 (530)
T ss_dssp             HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence            888888887764  4432  467777777778888888888888877652 112333322222 2335788888888888


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG-SVPR--EYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      ...+..  +-+...|..++..+.+.|+.++|..+|++....+ ..|+  ...|...+......|+.+.+..+..++.+
T Consensus       416 ~al~~~--p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          416 LGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHH--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHC--CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            877754  3456778888888888888888888888887753 2232  44777777878888888877777766653

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.31  E-value=1.9e-10  Score=112.88  Aligned_cols=216  Identities=10%  Similarity=-0.087  Sum_probs=178.9

Q ss_pred             CHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCCh-hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHH
Q 013010          111 GLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNV-KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEAL  189 (451)
Q Consensus       111 ~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  189 (451)
                      .+++|+..++.....  .+.+...+..+...+...|++ ++|.+.|++..+....   +...|..+...|...|++++|.
T Consensus        83 ~~~~al~~l~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~  157 (474)
T 4abn_A           83 EMEKTLQQMEEVLGS--AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE---LVEAWNQLGEVYWKKGDVTSAH  157 (474)
T ss_dssp             HHHHHHHHHHHHHTT--CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHhcc--CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHcCCHHHHH
Confidence            367888888876632  344778899999999999999 9999999999988632   5778999999999999999999


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhc---------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc------
Q 013010          190 ATFYRMKQFRCRPDVYAYNVVINALCRV---------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY------  254 (451)
Q Consensus       190 ~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~------  254 (451)
                      +.|++..+.  .|+...+..+...|...         |++++|...|++..+..   +.+...|..+..+|...      
T Consensus       158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~~~~~~~  232 (474)
T 4abn_A          158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD---VLDGRSWYILGNAYLSLYFNTGQ  232 (474)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHhhcc
Confidence            999999985  57888999999999999         99999999999998875   35788999999999887      


Q ss_pred             --CCchhhhHHHHHHHHHHHHHHHHHHhcCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 013010          255 --GMQTGCRKAIRRRIWEANHLFRLMLFKGFV--PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIR  330 (451)
Q Consensus       255 --g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~  330 (451)
                        |           ++++|...|++..+..-.  -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..
T Consensus       233 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~  300 (474)
T 4abn_A          233 NPK-----------ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQ  300 (474)
T ss_dssp             CHH-----------HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccc-----------hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence              7           899999999998875210  367788888899999999999999999887753 225667888888


Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 013010          331 YYSVVNEIDKAIEMMRKM  348 (451)
Q Consensus       331 ~~~~~g~~~~A~~~~~~m  348 (451)
                      .+...|++++|++.+.++
T Consensus       301 ~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          301 LLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHhccc
Confidence            888888888888765443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.31  E-value=1.7e-10  Score=113.24  Aligned_cols=223  Identities=11%  Similarity=0.014  Sum_probs=179.1

Q ss_pred             hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 013010          148 VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV-NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL  226 (451)
Q Consensus       148 ~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  226 (451)
                      ++++...++......   +.+...+..+...|...|++ ++|++.|++..+.. +-+...|..+..+|...|++++|...
T Consensus        84 ~~~al~~l~~~~~~~---~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA---QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHTTC---CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccC---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            566666776655543   23677899999999999999 99999999998853 33588999999999999999999999


Q ss_pred             HHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc------
Q 013010          227 LEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT------  300 (451)
Q Consensus       227 ~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~------  300 (451)
                      |++..+..    |+..++..+...|...+...  ...-.+++++|...|++..+.. +-+...|..+..+|...      
T Consensus       160 ~~~al~~~----p~~~~~~~lg~~~~~~~~~~--~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~  232 (474)
T 4abn_A          160 FSGALTHC----KNKVSLQNLSMVLRQLQTDS--GDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQ  232 (474)
T ss_dssp             HHHHHTTC----CCHHHHHHHHHHHTTCCCSC--HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhC----CCHHHHHHHHHHHHHhccCC--hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcc
Confidence            99999775    77888999999998880000  0000019999999999988753 33577888899999988      


Q ss_pred             --CCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHH
Q 013010          301 --YRIERALELFDDMNKKGCI--PNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE  376 (451)
Q Consensus       301 --g~~~~a~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~  376 (451)
                        |++++|.+.|++..+..-.  -+...|..+-..|...|++++|.+.|++..+..  +-+...+..+...+...|++++
T Consensus       233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~a~~~l~~~~~~lg~~~e  310 (474)
T 4abn_A          233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD--PAWPEPQQREQQLLEFLSRLTS  310 (474)
T ss_dssp             CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHH
Confidence              9999999999998876210  278899999999999999999999999998876  4566788888889999999999


Q ss_pred             HHHHHHH
Q 013010          377 ARDFLAE  383 (451)
Q Consensus       377 A~~l~~~  383 (451)
                      |.+.+..
T Consensus       311 Ai~~~~~  317 (474)
T 4abn_A          311 LLESKGK  317 (474)
T ss_dssp             HHHHTTT
T ss_pred             HHHHhcc
Confidence            8876543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.28  E-value=3.4e-10  Score=107.76  Aligned_cols=299  Identities=10%  Similarity=-0.091  Sum_probs=202.8

Q ss_pred             hcCHHHHHHHHHHHhhcCC-CCCC--HHhHHHHHHHHH--ccCChhHHH-----------HHHHHHHHcCCCCCc--cHH
Q 013010          109 TLGLNKATEFYHWVERFFD-FFHN--EMTCKEMGIVFA--RGNNVKGLW-----------DFLKDMSRRGNGELV--TTS  170 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~-~~~~--~~~~~~ll~~~~--~~g~~~~a~-----------~~~~~m~~~~~~~~~--~~~  170 (451)
                      .+++++|..+++.+.+..+ ...|  ...|-.++..-.  -.++++.+.           +.++.+.........  ...
T Consensus        25 ~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l~~~  104 (383)
T 3ulq_A           25 RFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYY  104 (383)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHHHHH
Confidence            5668999999999876422 2233  333444443321  223344444           666666543211000  011


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC----CCCH
Q 013010          171 SVTCLIKVLGEEGLVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRC----PPDV  241 (451)
Q Consensus       171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~----~p~~  241 (451)
                      .+......+...|++++|...|++..+.    +-.+ ...+|..+...|...|++++|...+.+..+.....    +...
T Consensus       105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  184 (383)
T 3ulq_A          105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL  184 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence            1222456677899999999999999774    1111 34678889999999999999999998876531110    1134


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010          242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKK  316 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  316 (451)
                      .+++.+...|...|           ++++|...|++..+.    +-.+ ...++..+...|...|++++|.+.+++..+.
T Consensus       185 ~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  253 (383)
T 3ulq_A          185 QCHSLFATNFLDLK-----------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV  253 (383)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            67888999999999           777777777666532    1111 2347888999999999999999999988762


Q ss_pred             ----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCChhhHHHHHHHHHHcCC---HHHHHHHHHHHH
Q 013010          317 ----GC-IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VPTSSSYTPIIHALCEAGR---VLEARDFLAELV  385 (451)
Q Consensus       317 ----g~-~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~l~~~m~  385 (451)
                          +. +....++..+...|...|++++|...+++..+....   ......+..+-..+...|+   +++|..++++. 
T Consensus       254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-  332 (383)
T 3ulq_A          254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-  332 (383)
T ss_dssp             HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-
T ss_pred             HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-
Confidence                33 334678889999999999999999999987764211   1112335667777888888   77777777665 


Q ss_pred             hCCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          386 DGGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       386 ~~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                        +..|+ ...+..+...|...|+++.|.+.+++.++
T Consensus       333 --~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          333 --MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              33333 45678899999999999999999887763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.27  E-value=1.6e-09  Score=91.41  Aligned_cols=165  Identities=18%  Similarity=0.138  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC
Q 013010          204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF  283 (451)
Q Consensus       204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~  283 (451)
                      +.+|..+...|...|++++|.+.|++..+..   |-+..++..+...|.+.|           ++++|...+....... 
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~-----------~~~~a~~~~~~~~~~~-   69 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD---PNNVETLLKLGKTYMDIG-----------LPNDAIESLKKFVVLD-   69 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcC-
Confidence            3344444444444444444444444444332   123344444444444444           4444444444443321 


Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHH
Q 013010          284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTP  363 (451)
Q Consensus       284 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~  363 (451)
                      +-+...+..+...+...++++.|.+.+....+.. +-+...+..+-..|.+.|++++|++.|++..+..  +-+...|..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~  146 (184)
T 3vtx_A           70 TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--PGFIRAYQS  146 (184)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred             chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--chhhhHHHH
Confidence            1122333333344444444444444444443321 1133444444444555555555555555544443  233444445


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Q 013010          364 IIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       364 li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      +...|.+.|++++|.+.|++.++
T Consensus       147 lg~~~~~~g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          147 IGLAYEGKGLRDEAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh
Confidence            55555555555555555554443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.27  E-value=1.2e-09  Score=92.31  Aligned_cols=167  Identities=14%  Similarity=0.067  Sum_probs=96.1

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...|..+...|.+.|++++|.+.|++..+....   +..++..+...|.+.|++++|...+....... +-+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN---NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHH
Confidence            4455666666666666666666666666655422   44556666666666666666666666665532 2234555555


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY  290 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  290 (451)
                      ...+...++++.|...+.+.....   +.+..++..+...|.+.|           ++++|.+.|++..+.. +-+..+|
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~---~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~~l~~~-p~~~~~~  144 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALN---TVYADAYYKLGLVYDSMG-----------EHDKAIEAYEKTISIK-PGFIRAY  144 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHHHHHhC-----------CchhHHHHHHHHHHhc-chhhhHH
Confidence            555666666666666666655543   234555666666666666           5666666666555432 2234555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNKK  316 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~~  316 (451)
                      ..+..+|.+.|++++|.+.|++..+.
T Consensus       145 ~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          145 QSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            55666666666666666666655543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.25  E-value=4.7e-09  Score=102.57  Aligned_cols=282  Identities=11%  Similarity=-0.004  Sum_probs=195.7

Q ss_pred             CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHc-----CC-CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC---
Q 013010          128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRR-----GN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF---  198 (451)
Q Consensus       128 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---  198 (451)
                      .......||.|...+...|++++|.+.|++..+.     +. ..+....+|+.+...|...|++++|...|++..+.   
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3445678999999999999999999999876542     11 11224568999999999999999999999887652   


Q ss_pred             --C-CC-CCHHHHHHHHHHHHhc--CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHH
Q 013010          199 --R-CR-PDVYAYNVVINALCRV--GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN  272 (451)
Q Consensus       199 --g-~~-p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~  272 (451)
                        + .. ....+++.+..++...  +++++|...|++..+..   |-+...+..+..++.+.+...        +.++|.
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~---p~~~~~~~~~~~~~~~l~~~~--------~~~~al  195 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK---PKNPEFTSGLAIASYRLDNWP--------PSQNAI  195 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHSC--------CCCCTH
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhcCch--------HHHHHH
Confidence              1 11 2356676666666554  56999999999988765   235556666555544333111        445666


Q ss_pred             HHHHHHHhcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010          273 HLFRLMLFKGFVPDVVAYNCLIDGCCK----TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM  348 (451)
Q Consensus       273 ~~~~~m~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m  348 (451)
                      +.+++..+.. +.+..++..+...+..    .|++++|.+.+++..... +.+..++..+...|...|++++|...+++.
T Consensus       196 ~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  273 (472)
T 4g1t_A          196 DPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKA  273 (472)
T ss_dssp             HHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            6676665542 2345556555555544    467889999999887653 336788899999999999999999999999


Q ss_pred             HhcCCCCCChhhHHHHHHHHHHc-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010          349 QNLNHGVPTSSSYTPIIHALCEA-------------------GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP  409 (451)
Q Consensus       349 ~~~~~~~p~~~~~~~li~~~~~~-------------------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~  409 (451)
                      .+..  +-+...+..+...|...                   +..++|...+....+.. +.+..++..+...+...|++
T Consensus       274 l~~~--p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~  350 (472)
T 4g1t_A          274 LEYI--PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQY  350 (472)
T ss_dssp             HHHS--TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCH
T ss_pred             HHhC--CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccH
Confidence            9875  44566666665555332                   23567778887776543 22345677889999999999


Q ss_pred             chHHHHHHHHHHhchH
Q 013010          410 SLLDDGLRKRIRDGIE  425 (451)
Q Consensus       410 ~~a~~~~~~~~~~g~~  425 (451)
                      ++|.+.+++.++....
T Consensus       351 ~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          351 EEAEYYFQKEFSKELT  366 (472)
T ss_dssp             HHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHHhcCCC
Confidence            9999999998865443

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.25  E-value=2.3e-10  Score=105.00  Aligned_cols=208  Identities=11%  Similarity=0.029  Sum_probs=142.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHH
Q 013010          202 PDVYAYNVVINALCRVGNFNKARFLLEQMELP-----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR  276 (451)
Q Consensus       202 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~  276 (451)
                      .+..++..+...+...|++++|..+|+++.+.     +...+....++..+...|...|           ++++|...++
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~   93 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-----------KYKDAANLLN   93 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHH
Confidence            34677888999999999999999999998763     0001245677889999999999           6666666666


Q ss_pred             HHHhc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 013010          277 LMLFK-------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------GCIP-NRVTYNSFIRYYSVVNEIDKAI  342 (451)
Q Consensus       277 ~m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~  342 (451)
                      +....       .......++..+...|...|++++|.+.+++..+.      +-.| ...++..+...|...|++++|.
T Consensus        94 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  173 (311)
T 3nf1_A           94 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVE  173 (311)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            65542       12334567888999999999999999999988764      2233 4567888899999999999999


Q ss_pred             HHHHHHHhc------CCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHH
Q 013010          343 EMMRKMQNL------NHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG-------GSVPR-------EYTYKLVCDA  402 (451)
Q Consensus       343 ~~~~~m~~~------~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~-------~~t~~~li~~  402 (451)
                      +++++..+.      +.......++..+...|...|++++|.++++++.+.       ...+.       ...+..+...
T Consensus       174 ~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (311)
T 3nf1_A          174 YYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGK  253 (311)
T ss_dssp             HHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCc
Confidence            999998775      211233457888899999999999999999998752       11111       1223334444


Q ss_pred             HHhcCCCchHHHHHHHHH
Q 013010          403 LNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       403 ~~~~g~~~~a~~~~~~~~  420 (451)
                      +...+.+..+...+.+..
T Consensus       254 ~~~~~~~~~a~~~~~~~~  271 (311)
T 3nf1_A          254 QKDGTSFGEYGGWYKACK  271 (311)
T ss_dssp             ----CCSCCCC-------
T ss_pred             hhhHHHHHHHHHHHhhcC
Confidence            555555655555555544

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.22  E-value=2.8e-09  Score=89.40  Aligned_cols=163  Identities=14%  Similarity=0.016  Sum_probs=76.3

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010          170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS  249 (451)
Q Consensus       170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~  249 (451)
                      ..|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++++.+..   +.+...+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~a~   84 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA---PDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCCHHHHHHHHH
Confidence            344445555555555555555555554432 2244445555555555555555555555554432   134444555555


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFI  329 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li  329 (451)
                      .+...|           ++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus        85 ~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  151 (186)
T 3as5_A           85 TYVQVQ-----------KYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIA  151 (186)
T ss_dssp             HHHHHT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHhc-----------CHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHH
Confidence            555555           4555555555444331 2233344444444444444444444444444331 11334444444


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 013010          330 RYYSVVNEIDKAIEMMRKMQ  349 (451)
Q Consensus       330 ~~~~~~g~~~~A~~~~~~m~  349 (451)
                      ..|...|++++|...+++..
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~  171 (186)
T 3as5_A          152 FSYEQMGRHEEALPHFKKAN  171 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            44444444444444444443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.21  E-value=1.7e-08  Score=106.58  Aligned_cols=190  Identities=17%  Similarity=0.213  Sum_probs=113.1

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL  184 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~  184 (451)
                      .+...+..++|..+|+....      .....+.++.   ..+++++|.++.++.        .+..+|..+..++...|+
T Consensus      1058 Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv--------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1058 IAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC--------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             HHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCC
Confidence            34445667788888777521      1222233322   566777777777644        134467777777777777


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI  264 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~  264 (451)
                      +++|.+.|.+.      -|...|.-++.+|.+.|++++|.+.|...++..    ++....+.++.+|++.+         
T Consensus      1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~----~e~~Idt~LafaYAKl~--------- 1181 (1630)
T 1xi4_A         1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA----RESYVETELIFALAKTN--------- 1181 (1630)
T ss_pred             HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc----ccccccHHHHHHHHhhc---------
Confidence            77777777553      356677777777777777777777777665543    23333334777777776         


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          265 RRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                        ++++...+.    .   .++...|..+...|...|++++|...|...         ..|..+..+|.+.|++++|.+.
T Consensus      1182 --rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A         1182 --RLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred             --CHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHH
Confidence              444322221    1   234444555556666666666666666652         3566666666666666666666


Q ss_pred             HHHH
Q 013010          345 MRKM  348 (451)
Q Consensus       345 ~~~m  348 (451)
                      +++.
T Consensus      1244 arKA 1247 (1630)
T 1xi4_A         1244 ARKA 1247 (1630)
T ss_pred             HHHh
Confidence            6544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.20  E-value=7.5e-09  Score=109.27  Aligned_cols=252  Identities=12%  Similarity=0.054  Sum_probs=158.5

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      .+++++|.++.+...       +..+|..+..++.+.|++++|.+.|.+.   +     +...|..++.+|.+.|++++|
T Consensus      1089 i~nldrAiE~Aervn-------~p~vWsqLAKAql~~G~~kEAIdsYiKA---d-----D~say~eVa~~~~~lGkyEEA 1153 (1630)
T 1xi4_A         1089 IGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA---D-----DPSSYMEVVQAANTSGNWEEL 1153 (1630)
T ss_pred             HhhHHHHHHHHHhcC-------CHHHHHHHHHHHHhCCCHHHHHHHHHhc---C-----ChHHHHHHHHHHHHcCCHHHH
Confidence            345555555555432       4567777777777777777777777442   1     445577777777777777777


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI  268 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~  268 (451)
                      .+.|...++..  ++....+.++.+|++.+++++...+.    . +    ++...|..+...|...|           ++
T Consensus      1154 IeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-~----~n~ad~~~iGd~le~eg-----------~Y 1211 (1630)
T 1xi4_A         1154 VKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-G----PNNAHIQQVGDRCYDEK-----------MY 1211 (1630)
T ss_pred             HHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h-C----CCHHHHHHHHHHHHhcC-----------CH
Confidence            77777666543  33333334777777777776533332    1 2    45566666777777777           77


Q ss_pred             HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010          269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKM  348 (451)
Q Consensus       269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m  348 (451)
                      ++|..+|...         ..|..+..+|++.|++++|.+.+++.      -+..+|..+-.+|...|++..|......+
T Consensus      1212 eeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A         1212 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred             HHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            7777777763         36777777777777777777777765      25577777777777777777777765532


Q ss_pred             HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 013010          349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRI  420 (451)
Q Consensus       349 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~  420 (451)
                            ..++..+..++..|.+.|.+++|+.+++.-+... +-....|.-|..++++.. ++...+.++-..
T Consensus      1277 ------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~-peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1277 ------VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK-PQKMREHLELFW 1340 (1630)
T ss_pred             ------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC-HHHHHHHHHHHH
Confidence                  2345566677777777777777777776555332 222334555555555543 333444444333

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.20  E-value=2.3e-08  Score=94.47  Aligned_cols=275  Identities=13%  Similarity=0.030  Sum_probs=192.5

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCCCCc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCC----HHHHH
Q 013010          136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELV--TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPD----VYAYN  208 (451)
Q Consensus       136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~  208 (451)
                      ......+...|++++|...+++.........+  ...+++.+...+...|++++|...+++..+..- ..+    ..+++
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            33445566789999999999998776422111  122566777888889999999999988765210 112    23456


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhC----CCCCCC-CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC
Q 013010          209 VVINALCRVGNFNKARFLLEQMELP----GFRCPP-DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF  283 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~  283 (451)
                      .+...+...|++++|...+++....    +....| ...++..+...+...|           ++++|...+++.....-
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~~  166 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-----------RLDEAEASARSGIEVLS  166 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHhh
Confidence            7778889999999999999887543    210002 3456677888899999           88899998888765321


Q ss_pred             C----CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 013010          284 V----PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN-RVTYN-----SFIRYYSVVNEIDKAIEMMRKMQNLNH  353 (451)
Q Consensus       284 ~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~-----~li~~~~~~g~~~~A~~~~~~m~~~~~  353 (451)
                      .    ....++..+...+...|++++|...+++.....-.++ ...+.     .....+...|++++|...+++......
T Consensus       167 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  246 (373)
T 1hz4_A          167 SYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF  246 (373)
T ss_dssp             TSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred             ccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence            1    1235677788889999999999999998765321111 11221     233447789999999999999876442


Q ss_pred             CCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCCH-HHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          354 GVP--TSSSYTPIIHALCEAGRVLEARDFLAELVD----GGSVPRE-YTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       354 ~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~-~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      ..+  ....+..+...+...|++++|.+.+++...    .|..++. ..+..+..++...|+.+.|...+++.+.
T Consensus       247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            111  122466777889999999999999988763    2332233 3677778889999999999999888774

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.17  E-value=4.3e-09  Score=88.20  Aligned_cols=164  Identities=18%  Similarity=0.107  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC
Q 013010          205 YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV  284 (451)
Q Consensus       205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~  284 (451)
                      ..|..+...+...|++++|...|+++....   +.+..++..+...+...|           ++++|...+++..+.. +
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~~~~-~   73 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD---AFDVDVALHLGIAYVKTG-----------AVDRGTELLERSLADA-P   73 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---SCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---ccChHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhcC-C
Confidence            445566666777777777777777766543   245666777777777777           6677777777666542 2


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      .+...+..+...+...|++++|.+.++.+.+.. +.+...+..+...|...|++++|.+.+++..+..  +.+...+..+
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l  150 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAI  150 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHH
Confidence            345666666777777777777777777766542 2356666667777777777777777777776654  3456667777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 013010          365 IHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       365 i~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ...+...|++++|.+.+++..+
T Consensus       151 a~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          151 AFSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777777777777776654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.16  E-value=1.9e-09  Score=102.47  Aligned_cols=235  Identities=8%  Similarity=-0.056  Sum_probs=174.8

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCC---CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C----CCCHHHHH
Q 013010          138 MGIVFARGNNVKGLWDFLKDMSRRGN---GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--C----RPDVYAYN  208 (451)
Q Consensus       138 ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~----~p~~~~~~  208 (451)
                      ....+...|++++|...+++..+...   .+.....++..+...|...|++++|...+++..+.-  .    .....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            55667889999999999999876521   112245788999999999999999999999886621  1    11246788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhCCCCC---CCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----
Q 013010          209 VVINALCRVGNFNKARFLLEQMELPGFRC---PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----  281 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----  281 (451)
                      .+...|...|++++|...|++..+..-..   +....++..+...|...|           ++++|...+++..+.    
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~al~~~~~~  257 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS-----------QYEDAIPYFKRAIAVFEES  257 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHhh
Confidence            88999999999999999998876432110   112257888999999999           777887777776651    


Q ss_pred             CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC
Q 013010          282 GF-VPDVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPNRVTYNSFIRYYSVVNE---IDKAIEMMRKMQNLNH  353 (451)
Q Consensus       282 ~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~  353 (451)
                      +. +....++..+...|.+.|++++|.+.+++..+.    +-+.....+..+-..|...|+   +++|+.++++.   +.
T Consensus       258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~  334 (383)
T 3ulq_A          258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML  334 (383)
T ss_dssp             TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC
T ss_pred             ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC
Confidence            33 334567888999999999999999999987653    211223345667778888898   78888888776   22


Q ss_pred             CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       354 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      .......+..+...|...|++++|.+.+++..+
T Consensus       335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            123345777888999999999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.15  E-value=6.5e-10  Score=100.25  Aligned_cols=226  Identities=14%  Similarity=0.087  Sum_probs=147.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcC-----CCCCccHHhHHHHHHHHHhcCCHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRG-----NGELVTTSSVTCLIKVLGEEGLVN  186 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-----~~~~~~~~~~~~li~~~~~~g~~~  186 (451)
                      +++|+++++..... ..+....++..+...+...|++++|...+++..+..     ...+....++..+...|...|+++
T Consensus        24 ~~~al~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  102 (283)
T 3edt_B           24 CKQALEDLEKTSGH-DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYK  102 (283)
T ss_dssp             HHHHHHHHHHHHCS-SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHH
Confidence            56667766665522 223356788899999999999999999999887652     222345678999999999999999


Q ss_pred             HHHHHHHHHhhC------C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----CCCCCCCHHHHHHHHHHHHhc
Q 013010          187 EALATFYRMKQF------R-CRPDVYAYNVVINALCRVGNFNKARFLLEQMELP-----GFRCPPDVYTYTILISSYCKY  254 (451)
Q Consensus       187 ~A~~~~~~m~~~------g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~p~~~~~~~li~~~~~~  254 (451)
                      +|.+.|++..+.      . .+....++..+...|...|++++|...|++....     +...+....++..+...|...
T Consensus       103 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  182 (283)
T 3edt_B          103 EAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQ  182 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHc
Confidence            999999998764      1 1234677888999999999999999999988765     111123457888999999999


Q ss_pred             CCchhhhHHHHHHHHHHHHHHHHHHhc-------CCCCCHhhHHHHHHHHHhc-CC------HHHHHHHHHHHHhCCCCC
Q 013010          255 GMQTGCRKAIRRRIWEANHLFRLMLFK-------GFVPDVVAYNCLIDGCCKT-YR------IERALELFDDMNKKGCIP  320 (451)
Q Consensus       255 g~~~~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~li~~~~~~-g~------~~~a~~~~~~m~~~g~~p  320 (451)
                      |           ++++|...+++..+.       ...+....+...+..+... +.      +..+...++..... ...
T Consensus       183 g-----------~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  250 (283)
T 3edt_B          183 G-----------KYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT  250 (283)
T ss_dssp             T-----------CHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred             C-----------CHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence            9           777888777776542       2233333322222222222 22      11222222111110 111


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      ...++..+...|...|++++|..++++..+
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344566666677777777777777766554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.13  E-value=1.9e-09  Score=97.09  Aligned_cols=207  Identities=13%  Similarity=-0.011  Sum_probs=135.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC-----CCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 013010          203 DVYAYNVVINALCRVGNFNKARFLLEQMELPG-----FRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL  277 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~  277 (451)
                      ...++..+...|...|++++|...+++.....     ...+....++..+...|...|           ++++|...+.+
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~  110 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG-----------KYKEAEPLCKR  110 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT-----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHH
Confidence            45666777777777777777777777765431     111235678889999999999           66666666666


Q ss_pred             HHhc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 013010          278 MLFK-------GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK------GCIP-NRVTYNSFIRYYSVVNEIDKAIE  343 (451)
Q Consensus       278 m~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~A~~  343 (451)
                      ....       .-+....++..+...|...|++++|.+.+++..+.      +-.| ...++..+...|...|++++|..
T Consensus       111 al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  190 (283)
T 3edt_B          111 ALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET  190 (283)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5542       11334677888999999999999999999998764      2233 35778889999999999999999


Q ss_pred             HHHHHHhcC------CCCCChh-hHHHHHHHHHHcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc
Q 013010          344 MMRKMQNLN------HGVPTSS-SYTPIIHALCEAGR------VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS  410 (451)
Q Consensus       344 ~~~~m~~~~------~~~p~~~-~~~~li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~  410 (451)
                      ++++..+..      ...+... .|..+...+...+.      +..+...+..... .......++..+...|...|+++
T Consensus       191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~  269 (283)
T 3edt_B          191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLE  269 (283)
T ss_dssp             HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHH
Confidence            999887641      1123333 33333333333222      2222222221110 11123567888899999999999


Q ss_pred             hHHHHHHHHHH
Q 013010          411 LLDDGLRKRIR  421 (451)
Q Consensus       411 ~a~~~~~~~~~  421 (451)
                      .|.+.+++.++
T Consensus       270 ~A~~~~~~al~  280 (283)
T 3edt_B          270 AAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHHH
Confidence            99999888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.11  E-value=3.2e-08  Score=93.55  Aligned_cols=269  Identities=10%  Similarity=0.005  Sum_probs=188.3

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHccCChhHHHHHHHHHHHcCC---CCCccHHhHHHHHHH
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNE----MTCKEMGIVFARGNNVKGLWDFLKDMSRRGN---GELVTTSSVTCLIKV  178 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~~li~~  178 (451)
                      +...+++++|...++....... ..+.    ..++.+...+...|++++|...+++......   .+.....++..+...
T Consensus        24 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  102 (373)
T 1hz4_A           24 AINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  102 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            4456789999999999876421 1122    2566677888899999999999988765321   111123446677888


Q ss_pred             HHhcCCHHHHHHHHHHHhhC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC--CHHHHHHHHH
Q 013010          179 LGEEGLVNEALATFYRMKQF----RCR--P-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPP--DVYTYTILIS  249 (451)
Q Consensus       179 ~~~~g~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p--~~~~~~~li~  249 (451)
                      +...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++.........+  ...++..+..
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  182 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  182 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence            89999999999999988652    222  2 2456677888899999999999999987654321111  3467888888


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC--HhhHH----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD--VVAYN----CLIDGCCKTYRIERALELFDDMNKKGCIP---  320 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p---  320 (451)
                      .+...|           ++++|...+++.....-.++  .....    ..+..+...|++++|...+++.......+   
T Consensus       183 ~~~~~g-----------~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  251 (373)
T 1hz4_A          183 CSLARG-----------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  251 (373)
T ss_dssp             HHHHHT-----------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             HHHHcC-----------CHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence            999999           88888888887764311111  11111    23344779999999999999887643221   


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCCh-hhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG---VPTS-SSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ....+..+...+...|++++|...+++.......   .++. ..+..+..++...|+.++|...+.+...
T Consensus       252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            1335677788899999999999999987653210   1122 3566677788999999999999988764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.11  E-value=1.5e-08  Score=96.10  Aligned_cols=298  Identities=8%  Similarity=-0.060  Sum_probs=198.1

Q ss_pred             hcCHHHHHHHHHHHhhcC-CCCCC--HHhHHHHHHHH--HccCChhHHH---------HHHHHHHHcCCCCCc--cHHhH
Q 013010          109 TLGLNKATEFYHWVERFF-DFFHN--EMTCKEMGIVF--ARGNNVKGLW---------DFLKDMSRRGNGELV--TTSSV  172 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~-~~~~~--~~~~~~ll~~~--~~~g~~~~a~---------~~~~~m~~~~~~~~~--~~~~~  172 (451)
                      ..++++|..+++.+.... ....|  ...|-.++..-  .-.+.++.+.         +.++.+.....+.+.  ....+
T Consensus        25 ~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~  104 (378)
T 3q15_A           25 QFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSL  104 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHHHH
T ss_pred             HcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHHHH
Confidence            456899999999876632 22223  33344444431  1112222233         666665443211000  11122


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCC-CC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCC----CCHHH
Q 013010          173 TCLIKVLGEEGLVNEALATFYRMKQFRC-RP----DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCP----PDVYT  243 (451)
Q Consensus       173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----p~~~~  243 (451)
                      ......+...|++++|...|++..+..- .+    ...++..+...|...|+++.|...+.+.........    ....+
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  184 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS  184 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence            2334456789999999999999876421 12    256788888999999999999999988754311100    12567


Q ss_pred             HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh---
Q 013010          244 YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFV-PDVVAYNCLIDGCCKTYRIERALELFDDMNK---  315 (451)
Q Consensus       244 ~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---  315 (451)
                      ++.+...|...|           ++++|.+.|++..+.    +-. ....+++.+...|...|++++|.+.+++..+   
T Consensus       185 ~~~lg~~y~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~  253 (378)
T 3q15_A          185 LFVIAGNYDDFK-----------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR  253 (378)
T ss_dssp             HHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            888999999999           677777777665432    211 1235678888999999999999999998876   


Q ss_pred             --CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---hhhHHHHHHHHHHcCC---HHHHHHHHHHHHhC
Q 013010          316 --KGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT---SSSYTPIIHALCEAGR---VLEARDFLAELVDG  387 (451)
Q Consensus       316 --~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~  387 (451)
                        .. +....++..+...|.+.|++++|...+++..+......+   ...+..+-..+...|+   +.+|..++++   .
T Consensus       254 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~  329 (378)
T 3q15_A          254 EKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---K  329 (378)
T ss_dssp             HHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---T
T ss_pred             hhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---C
Confidence              32 223678888999999999999999999998875432112   2345555556667788   7777777765   3


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          388 GSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       388 g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                      +..|+ ...+..+...|...|+++.|.+.+++.++
T Consensus       330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            33332 45677899999999999999999988774

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.10  E-value=4.6e-08  Score=97.30  Aligned_cols=216  Identities=11%  Similarity=0.000  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh-------cCCHH-------HHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013010          150 GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE-------EGLVN-------EALATFYRMKQFRCRPDVYAYNVVINALC  215 (451)
Q Consensus       150 ~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~p~~~~~~~li~~~~  215 (451)
                      .+..+|++......   .+...|..+...+.+       .|+++       +|..+|++..+.-.+-+...|..++..+.
T Consensus       256 ~a~~~y~~al~~~p---~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~  332 (530)
T 2ooe_A          256 RVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE  332 (530)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            67778888877642   256778888888775       69977       99999999986323446889999999999


Q ss_pred             hcCChHHHHHHHHHhhhCCCCCCCC-H-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-HhhHHH
Q 013010          216 RVGNFNKARFLLEQMELPGFRCPPD-V-YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-VVAYNC  292 (451)
Q Consensus       216 ~~g~~~~a~~~~~~m~~~g~~~~p~-~-~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~  292 (451)
                      +.|++++|..+|+++.+..    |+ . ..|..++..+.+.|           ++++|..+|++..+.  .|+ ...|-.
T Consensus       333 ~~g~~~~A~~~~~~al~~~----p~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~Al~~--~~~~~~~~~~  395 (530)
T 2ooe_A          333 SRMKYEKVHSIYNRLLAIE----DIDPTLVYIQYMKFARRAE-----------GIKSGRMIFKKARED--ARTRHHVYVT  395 (530)
T ss_dssp             HTTCHHHHHHHHHHHHHSS----SSCHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHTC--TTCCTHHHHH
T ss_pred             hcCCHHHHHHHHHHHhCcc----ccCchHHHHHHHHHHHHhc-----------CHHHHHHHHHHHHhc--cCCchHHHHH
Confidence            9999999999999999864    43 3 58888888888888           999999999998875  232 223322


Q ss_pred             HHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHH
Q 013010          293 LID-GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT--SSSYTPIIHALC  369 (451)
Q Consensus       293 li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~--~~~~~~li~~~~  369 (451)
                      ... .+...|+.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+...|+  ...|...+....
T Consensus       396 ~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~  474 (530)
T 2ooe_A          396 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  474 (530)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            222 2346899999999999887752 225788999999999999999999999999987532232  347888888888


Q ss_pred             HcCCHHHHHHHHHHHHh
Q 013010          370 EAGRVLEARDFLAELVD  386 (451)
Q Consensus       370 ~~g~~~~A~~l~~~m~~  386 (451)
                      ..|+.+.+..++.++.+
T Consensus       475 ~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          475 NIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HSSCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            89999999999988875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.06  E-value=6.5e-09  Score=106.44  Aligned_cols=166  Identities=16%  Similarity=0.035  Sum_probs=140.8

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...|+.|...|.+.|++++|.+.|++..+....   +..+|+.+..+|.+.|++++|++.|++..+.. +-+..+|+.+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~---~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL   83 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4678999999999999999999999999887532   56789999999999999999999999998743 2257889999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhH
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAY  290 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  290 (451)
                      ..+|...|++++|++.|++..+..   +-+..+|+.+...|.+.|           ++++|++.|++..+.. +-+...+
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~---P~~~~a~~~Lg~~~~~~g-----------~~~eAi~~~~~Al~l~-P~~~~a~  148 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQIN---PAFADAHSNLASIHKDSG-----------NIPEAIASYRTALKLK-PDFPDAY  148 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhC-CCChHHH
Confidence            999999999999999999988765   347789999999999999           8899999999888752 2246788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNK  315 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~  315 (451)
                      ..+..++...|++++|.+.+++..+
T Consensus       149 ~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          149 CNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             hhhhhHHHhcccHHHHHHHHHHHHH
Confidence            8899999999999999888877654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.04  E-value=1.1e-08  Score=104.70  Aligned_cols=163  Identities=15%  Similarity=0.118  Sum_probs=85.8

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI  246 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~  246 (451)
                      +..+|+.|-..|.+.|++++|++.|++..+.  .| +..+|+.+..+|.+.|++++|+..|++..+..   |-+..+|..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~---P~~~~a~~n   82 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---PTFADAYSN   82 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHH
Confidence            3455566666666666666666666665553  23 34555555556666666666666665555443   224555555


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 013010          247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTY  325 (451)
Q Consensus       247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~  325 (451)
                      +..+|.+.|           ++++|.+.|++..+.. +-+...|+.+..+|...|++++|.+.|++..+.  .| +...|
T Consensus        83 Lg~~l~~~g-----------~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~  148 (723)
T 4gyw_A           83 MGNTLKEMQ-----------DVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAY  148 (723)
T ss_dssp             HHHHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHH
T ss_pred             HHHHHHHcC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHH
Confidence            555555555           5555555555554431 113344555555555555555555555554443  23 34445


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHH
Q 013010          326 NSFIRYYSVVNEIDKAIEMMRKMQ  349 (451)
Q Consensus       326 ~~li~~~~~~g~~~~A~~~~~~m~  349 (451)
                      ..+...|...|++++|.+.+++..
T Consensus       149 ~~L~~~l~~~g~~~~A~~~~~kal  172 (723)
T 4gyw_A          149 CNLAHCLQIVCDWTDYDERMKKLV  172 (723)
T ss_dssp             HHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred             hhhhhHHHhcccHHHHHHHHHHHH
Confidence            555555555555555555554443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.98  E-value=7.7e-08  Score=91.21  Aligned_cols=234  Identities=9%  Similarity=-0.010  Sum_probs=171.3

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCC---CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCC-CHHHHH
Q 013010          138 MGIVFARGNNVKGLWDFLKDMSRRGN---GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF----R-CRP-DVYAYN  208 (451)
Q Consensus       138 ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p-~~~~~~  208 (451)
                      ....+...|++++|...+++..+...   .+.....++..+...|...|+++.|...+++..+.    + ..+ ...+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            44556789999999999999876521   11234567888999999999999999999887652    1 111 256788


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhC----CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh----
Q 013010          209 VVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF----  280 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~----  280 (451)
                      .+...|...|++++|...|++..+.    +.. .....++..+...|...|           ++++|...+++..+    
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~~-----------~~~~A~~~~~~al~~~~~  254 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQND-RFIAISLLNIANSYDRSG-----------DDQMAVEHFQKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999887653    211 112357888999999999           77777777776654    


Q ss_pred             cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCC
Q 013010          281 KGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG----CIPNRVTYNSFIRYYSVVNE---IDKAIEMMRKMQNLNH  353 (451)
Q Consensus       281 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~---~~~A~~~~~~m~~~~~  353 (451)
                      .+.+....++..+...+.+.|++++|...+++..+..    -+.....+..+-..|...++   +++|+..+++.   +.
T Consensus       255 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~  331 (378)
T 3q15_A          255 KVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NL  331 (378)
T ss_dssp             HCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TC
T ss_pred             hCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CC
Confidence            1223336778889999999999999999999877642    22223456666667777788   78888887763   22


Q ss_pred             CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          354 GVPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       354 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      .......+..+...|...|++++|.+.|++..+
T Consensus       332 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          332 HAYIEACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            122334667788899999999999999988764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.97  E-value=1.4e-07  Score=82.48  Aligned_cols=199  Identities=11%  Similarity=-0.008  Sum_probs=129.0

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      +...+......+...|++++|...|++..+..-+++...+..+..++...|++++|.+.|++.....   |.+..+|..+
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l   82 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN---YNLANAYIGK   82 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CSHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC---cchHHHHHHH
Confidence            3455666666777777777777777777664432566666667777777777777777777777654   2355667777


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010          248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-------VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP  320 (451)
Q Consensus       248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  320 (451)
                      ...|...|           ++++|...+++..+.. +.+.       ..|..+-..+...|++++|.+.|+...+.  .|
T Consensus        83 ~~~~~~~~-----------~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p  148 (228)
T 4i17_A           83 SAAYRDMK-----------NNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TS  148 (228)
T ss_dssp             HHHHHHTT-----------CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SC
T ss_pred             HHHHHHcc-----------cHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CC
Confidence            77777777           7777777777766542 1122       34666666778889999999999988776  45


Q ss_pred             C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 013010          321 N---RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY  394 (451)
Q Consensus       321 ~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  394 (451)
                      +   ...+..+-..|...     +..+++++...+  ..+...|....  ....+.+++|...+++..+.  .|+..
T Consensus       149 ~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~--~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~  214 (228)
T 4i17_A          149 KKWKTDALYSLGVLFYNN-----GADVLRKATPLA--SSNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRT  214 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGT--TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCH
T ss_pred             CcccHHHHHHHHHHHHHH-----HHHHHHHHHhcc--cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCH
Confidence            4   45566666666443     445566666654  34445554443  33456688899988888764  35433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.94  E-value=1.6e-07  Score=81.97  Aligned_cols=196  Identities=14%  Similarity=0.006  Sum_probs=146.7

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       202 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      .|...+......+...|++++|...|++..+..-  +++...+..+..++...|           ++++|...|++..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~al~~   71 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN--NQDSVTAYNCGVCADNIK-----------KYKEAADYFDIAIKK   71 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhh-----------cHHHHHHHHHHHHHh
Confidence            4567888888999999999999999999887652  167788888999999999           899999999988875


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 013010          282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NR-------VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNH  353 (451)
Q Consensus       282 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~-------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~  353 (451)
                      . +-+...+..+...|...|++++|.+.+++..+..  | +.       ..|..+-..+...|++++|++.|++..+.. 
T Consensus        72 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-  147 (228)
T 4i17_A           72 N-YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-  147 (228)
T ss_dssp             T-CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-
T ss_pred             C-cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-
Confidence            3 2256778889999999999999999999988753  4 34       457777778888999999999999998764 


Q ss_pred             CCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010          354 GVP--TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       354 ~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g  423 (451)
                       +-  +...|..+...|...|     ..+++++...+ ..+...|....  ....|.++.|...+++.++..
T Consensus       148 -p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          148 -SKKWKTDALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred             -CCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence             23  3567777777776544     34445554433 22344454443  334456788888888888643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.91  E-value=1.4e-07  Score=85.26  Aligned_cols=182  Identities=10%  Similarity=0.062  Sum_probs=131.3

Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR  267 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~  267 (451)
                      |...|++..+.+ .++..++..+..++...|++++|++++.+....+-. .-+...+..++..+.+.|           +
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~-~~~lea~~l~vqi~L~~~-----------r  151 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEA-EGTTELLLLAIEVALLNN-----------N  151 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCS-TTHHHHHHHHHHHHHHTT-----------C
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-cCcHHHHHHHHHHHHHCC-----------C
Confidence            778888887655 456666677888888899999999999988766521 136778888899999999           8


Q ss_pred             HHHHHHHHHHHHhcCCCC-----CHhhHHHHHHHH--HhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 013010          268 IWEANHLFRLMLFKGFVP-----DVVAYNCLIDGC--CKTY--RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI  338 (451)
Q Consensus       268 ~~~a~~~~~~m~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  338 (451)
                      .+.|.+.+++|.+.  .|     +..+...+..++  ...|  +..+|+.+|+++.+.  .|+..+-..++.++.+.|++
T Consensus       152 ~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~  227 (310)
T 3mv2_B          152 VSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI  227 (310)
T ss_dssp             HHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH
Confidence            88999999998765  45     245555566553  2334  889999999998765  35544555556688889999


Q ss_pred             HHHHHHHHHHHhcC----C----CCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 013010          339 DKAIEMMRKMQNLN----H----GVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGG  388 (451)
Q Consensus       339 ~~A~~~~~~m~~~~----~----~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  388 (451)
                      ++|.+.++.+.+..    -    .+-++.+...+|......|+  +|.+++.++.+..
T Consensus       228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            99999998766531    0    03356666566666666676  8888888888743

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.90  E-value=1.3e-07  Score=74.22  Aligned_cols=129  Identities=18%  Similarity=0.197  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH
Q 013010          243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR  322 (451)
Q Consensus       243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  322 (451)
                      .|..+...+...|           ++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.+ +.+.
T Consensus         3 ~~~~l~~~~~~~~-----------~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~   69 (136)
T 2fo7_A            3 AWYNLGNAYYKQG-----------DYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSA   69 (136)
T ss_dssp             HHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHHHHHcC-----------cHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCch
Confidence            4555666666666           6677777777666542 2345566666667777777777777777766543 2245


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ..+..+...|...|++++|..+++++.+..  +.+...+..+...+...|++++|.+.+.++.+
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            666666777777777777777777776654  34556666667777777777777777776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.89  E-value=9.3e-08  Score=75.16  Aligned_cols=130  Identities=14%  Similarity=0.148  Sum_probs=108.2

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA  213 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  213 (451)
                      .|..+...+...|++++|..+++.+.+.+..   +...+..+...+...|++++|...|+++.+.+ +.+...+..+...
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   78 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR---SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNA   78 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc---chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence            4667888888999999999999998876522   56678888889999999999999999988754 3467788888899


Q ss_pred             HHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      +...|++++|.++++++....   +.+..++..+...+.+.|           ++++|...+.++...
T Consensus        79 ~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~la~~~~~~~-----------~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           79 YYKQGDYDEAIEYYQKALELD---PRSAEAWYNLGNAYYKQG-----------DYDEAIEYYQKALEL  132 (136)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTT-----------CHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHHc-----------cHHHHHHHHHHHHcc
Confidence            999999999999999988764   346788888999999999           888999998887754

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.88  E-value=1.6e-06  Score=84.27  Aligned_cols=278  Identities=8%  Similarity=-0.049  Sum_probs=167.1

Q ss_pred             cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChh---HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC--
Q 013010          110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVK---GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL--  184 (451)
Q Consensus       110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~--  184 (451)
                      ++.++|+..|+...+. |.   ...+..|...|...+..+   ++.+.+......|     +...+..|...|...+.  
T Consensus        88 ~~~~~A~~~~~~Aa~~-g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g-----~~~a~~~Lg~~y~~~~~~~  158 (452)
T 3e4b_A           88 AEHHEAESLLKKAFAN-GE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG-----YPEAGLAQVLLYRTQGTYD  158 (452)
T ss_dssp             HHHHHHHHHHHHHHHT-TC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT-----CTTHHHHHHHHHHHHTCGG
T ss_pred             cCHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcc
Confidence            3567888888877753 32   225556666666554433   3444444444444     22345566666666663  


Q ss_pred             --HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchh
Q 013010          185 --VNEALATFYRMKQFRCRPDVYAYNVVINALCRVG---NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTG  259 (451)
Q Consensus       185 --~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~  259 (451)
                        .+++..++.....    .+...+..+...|...|   +.++|.+.|++..+.|.   ++...+..|...|......  
T Consensus       159 ~~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~---~~a~~~~~Lg~~y~~g~~~--  229 (452)
T 3e4b_A          159 QHLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT---VTAQRVDSVARVLGDATLG--  229 (452)
T ss_dssp             GGHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHTCGGGS--
T ss_pred             cCHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCCCCC--
Confidence              3344444444333    22337777777777788   78888888888887773   5665556666666443100  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010          260 CRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDG-C--CKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN  336 (451)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g  336 (451)
                           .+++++|...|+... .|   +...+..+-.. +  ...+++++|.+.|+...+.|   +...+..|-..|. .|
T Consensus       230 -----~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G  296 (452)
T 3e4b_A          230 -----TPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EG  296 (452)
T ss_dssp             -----SCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HC
T ss_pred             -----CCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cC
Confidence                 016778888887766 32   44555555555 3  35778888888888877776   5666666666665 44


Q ss_pred             -----CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 013010          337 -----EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA--  405 (451)
Q Consensus       337 -----~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--  405 (451)
                           ++++|.+.|++.. .|    +...+..|-..|..    ..+.++|.++|....+.|..   .....|-..|..  
T Consensus       297 ~g~~~d~~~A~~~~~~Aa-~g----~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~G~  368 (452)
T 3e4b_A          297 KWVPADAKAAEAHFEKAV-GR----EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN---SADFAIAQLFSQGK  368 (452)
T ss_dssp             SSSCCCHHHHHHHHHTTT-TT----CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT---THHHHHHHHHHSCT
T ss_pred             CCCCCCHHHHHHHHHHHh-CC----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH---HHHHHHHHHHHhCC
Confidence                 8888888888776 33    34555555555554    33788888888887776642   233334444432  


Q ss_pred             --cCCCchHHHHHHHHHHhchHH
Q 013010          406 --AEEPSLLDDGLRKRIRDGIEY  426 (451)
Q Consensus       406 --~g~~~~a~~~~~~~~~~g~~~  426 (451)
                        ..+.+.|...+.+..+.|...
T Consensus       369 g~~~d~~~A~~~~~~A~~~g~~~  391 (452)
T 3e4b_A          369 GTKPDPLNAYVFSQLAKAQDTPE  391 (452)
T ss_dssp             TBCCCHHHHHHHHHHHHTTCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHH
Confidence              345666777777766666543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.87  E-value=1.6e-07  Score=85.64  Aligned_cols=211  Identities=11%  Similarity=-0.058  Sum_probs=143.7

Q ss_pred             ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCCC-HHHHHHHHHHHHhcCChH
Q 013010          147 NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF----RCRPD-VYAYNVVINALCRVGNFN  221 (451)
Q Consensus       147 ~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~  221 (451)
                      ++++|...+++.                 ...|...|++++|...|++..+.    |-.++ ..+|+.+..+|...|+++
T Consensus        32 ~~~~A~~~~~~a-----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~   94 (292)
T 1qqe_A           32 KFEEAADLCVQA-----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSV   94 (292)
T ss_dssp             HHHHHHHHHHHH-----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cHHHHHHHHHHH-----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            477787777665                 33566789999999888877552    21122 568888999999999999


Q ss_pred             HHHHHHHHhhhCCCCC-CC--CHHHHHHHHHHHHhc-CCchhhhHHHHHHHHHHHHHHHHHHhc----CCCCC-HhhHHH
Q 013010          222 KARFLLEQMELPGFRC-PP--DVYTYTILISSYCKY-GMQTGCRKAIRRRIWEANHLFRLMLFK----GFVPD-VVAYNC  292 (451)
Q Consensus       222 ~a~~~~~~m~~~g~~~-~p--~~~~~~~li~~~~~~-g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~  292 (451)
                      +|...|++........ .+  -..+++.+...|... |           ++++|...|++..+.    +-.+. ..+++.
T Consensus        95 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg-----------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~  163 (292)
T 1qqe_A           95 NAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLH-----------DYAKAIDCYELAGEWYAQDQSVALSNKCFIK  163 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence            9999888775432100 01  145788899999996 9           777777777766542    11111 356888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh---hHHH
Q 013010          293 LIDGCCKTYRIERALELFDDMNKKGCIPNR------VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS---SYTP  363 (451)
Q Consensus       293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~---~~~~  363 (451)
                      +...+...|++++|...|++..+.......      .+|..+..+|...|++++|...|++..+.....++..   .+..
T Consensus       164 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~  243 (292)
T 1qqe_A          164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKS  243 (292)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Confidence            899999999999999999998876432211      2567778888999999999999999876432112211   3444


Q ss_pred             HHHHHH--HcCCHHHHHHHHHHHH
Q 013010          364 IIHALC--EAGRVLEARDFLAELV  385 (451)
Q Consensus       364 li~~~~--~~g~~~~A~~l~~~m~  385 (451)
                      ++.+|.  ..+++++|.+.|+.+.
T Consensus       244 l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          244 LIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHcCCHHHHHHHHHHhccCC
Confidence            555554  3466888888876654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.87  E-value=1.8e-07  Score=90.93  Aligned_cols=272  Identities=12%  Similarity=0.080  Sum_probs=177.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccC-----ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH--
Q 013010          113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN-----NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV--  185 (451)
Q Consensus       113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~--  185 (451)
                      ++|++.|+...+.     +...+..|...+...+     ++++|...|++..+.|..     ..+..|...|...+..  
T Consensus        55 ~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~-----~A~~~Lg~~y~~~~~~~~  124 (452)
T 3e4b_A           55 KQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEG-----NTLIPLAMLYLQYPHSFP  124 (452)
T ss_dssp             ---------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCS-----SCHHHHHHHHHHCGGGCT
T ss_pred             HHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHhCCCCCC
Confidence            8888888887632     5556666777555554     778899999888887632     2566777777665543  


Q ss_pred             -HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010          186 -NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNK----ARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC  260 (451)
Q Consensus       186 -~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~  260 (451)
                       .++.+.+......|   +...+..+...|...+.++.    +..++..... +   .|+  .+..|...|...|...  
T Consensus       125 ~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~---~~~--a~~~Lg~~~~~~g~~~--  193 (452)
T 3e4b_A          125 NVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-T---TDI--CYVELATVYQKKQQPE--  193 (452)
T ss_dssp             TCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-T---CTT--HHHHHHHHHHHTTCHH--
T ss_pred             CHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-C---CHH--HHHHHHHHHHHcCCcc--
Confidence             34555555555544   34566666777777775544    4444444332 2   144  7888888888877443  


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--H
Q 013010          261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT----YRIERALELFDDMNKKGCIPNRVTYNSFIRY-Y--S  333 (451)
Q Consensus       261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~-~--~  333 (451)
                            +.++|...|+...+.| .++...+..+-..|...    +++++|.+.|+... .|   +...+..|-.. |  .
T Consensus       194 ------~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~  262 (452)
T 3e4b_A          194 ------QQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFP  262 (452)
T ss_dssp             ------HHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSG
T ss_pred             ------cHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCC
Confidence                  7889999999998876 34455445566666554    68999999999987 43   45556666555 3  4


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC-----CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 013010          334 VVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAG-----RVLEARDFLAELVDGGSVPREYTYKLVCDALNA---  405 (451)
Q Consensus       334 ~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~---  405 (451)
                      ..++.++|.+.|++..+.|    +...+..|-..|. .|     ++++|.++|++.. .   -+...+..|-..|..   
T Consensus       263 ~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g  333 (452)
T 3e4b_A          263 ELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYL  333 (452)
T ss_dssp             GGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCC
Confidence            6899999999999998876    4667777777776 55     9999999998877 3   356667777666666   


Q ss_pred             -cCCCchHHHHHHHHHHhchH
Q 013010          406 -AEEPSLLDDGLRKRIRDGIE  425 (451)
Q Consensus       406 -~g~~~~a~~~~~~~~~~g~~  425 (451)
                       ..+.++|.+.+++..+.|..
T Consensus       334 ~~~d~~~A~~~~~~Aa~~g~~  354 (452)
T 3e4b_A          334 GKVYPQKALDHLLTAARNGQN  354 (452)
T ss_dssp             SSCCHHHHHHHHHHHHTTTCT
T ss_pred             CCcCHHHHHHHHHHHHhhChH
Confidence             33888899999988876654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.86  E-value=8.9e-08  Score=87.35  Aligned_cols=199  Identities=9%  Similarity=-0.050  Sum_probs=144.7

Q ss_pred             HHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CC--CHHHHHHH
Q 013010          139 GIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC---RP--DVYAYNVV  210 (451)
Q Consensus       139 l~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p--~~~~~~~l  210 (451)
                      ...|...|++++|...|.+.....   ..+.....+|+.+..+|.+.|++++|+..|++..+...   .+  -..+++.+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            556778999999999998776542   11112356899999999999999999999998866311   11  14578889


Q ss_pred             HHHHHhc-CChHHHHHHHHHhhhCCCCC-CC--CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010          211 INALCRV-GNFNKARFLLEQMELPGFRC-PP--DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD  286 (451)
Q Consensus       211 i~~~~~~-g~~~~a~~~~~~m~~~g~~~-~p--~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~  286 (451)
                      ...|... |++++|...|++.....-.. .+  ...++..+...|.+.|           ++++|...|++..+......
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~  192 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDG-----------QYIEASDIYSKLIKSSMGNR  192 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHhcCC
Confidence            9999996 99999999999886542100 01  1457888999999999           99999999999887543222


Q ss_pred             Hh------hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 013010          287 VV------AYNCLIDGCCKTYRIERALELFDDMNKKGCIPN------RVTYNSFIRYYS--VVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       287 ~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~t~~~li~~~~--~~g~~~~A~~~~~~m~~  350 (451)
                      ..      .|..+..++...|++++|...|++..+.  .|+      ...+..++.+|.  ..+++++|+..|+.+..
T Consensus       193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            21      5677778889999999999999998764  232      123445566664  45678888888877654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.81  E-value=1.6e-07  Score=83.89  Aligned_cols=216  Identities=10%  Similarity=-0.024  Sum_probs=142.0

Q ss_pred             CCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHH
Q 013010          130 HNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC--RPDVYAY  207 (451)
Q Consensus       130 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~  207 (451)
                      .+...+-.+...+.+.|++++|...|+.+.+.....+.....+..+..+|...|++++|...|++..+..-  +.....+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            35566777888889999999999999999988643322366788899999999999999999999988521  1224567


Q ss_pred             HHHHHHHHh--------cCChHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010          208 NVVINALCR--------VGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM  278 (451)
Q Consensus       208 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m  278 (451)
                      ..+..++..        .|++++|...|++.....    |+ ......+....                  .....+.  
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----p~~~~~~~a~~~~~------------------~~~~~~~--  148 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY----PNHELVDDATQKIR------------------ELRAKLA--  148 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC----TTCTTHHHHHHHHH------------------HHHHHHH--
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC----cCchhHHHHHHHHH------------------HHHHHHH--
Confidence            777888888        999999999999998764    32 22222211111                  0000000  


Q ss_pred             HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHH
Q 013010          279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCI-P-NRVTYNSFIRYYSVV----------NEIDKAIEMMR  346 (451)
Q Consensus       279 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~t~~~li~~~~~~----------g~~~~A~~~~~  346 (451)
                               ..+-.+...|.+.|++++|...|+.+.+..-. + ....+..+..+|...          |++++|...|+
T Consensus       149 ---------~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~  219 (261)
T 3qky_A          149 ---------RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYE  219 (261)
T ss_dssp             ---------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHH
Confidence                     11344566777888888888888887765211 1 234566666677655          77888888888


Q ss_pred             HHHhcCCCCCC-hhhHHHHHHHHHHcCCHHHHH
Q 013010          347 KMQNLNHGVPT-SSSYTPIIHALCEAGRVLEAR  378 (451)
Q Consensus       347 ~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~  378 (451)
                      ++.+.....|. ......+-..+.+.++++++.
T Consensus       220 ~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          220 RLLQIFPDSPLLRTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHCTTCTHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHCCCChHHHHHHHHHHHHHHHHHHhhhhh
Confidence            88776421111 124444445555555555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.77  E-value=9.6e-07  Score=78.80  Aligned_cols=207  Identities=13%  Similarity=0.043  Sum_probs=147.1

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYT  243 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~  243 (451)
                      +...+-.+...+.+.|++++|...|+++.+..  |+    ...+..+..+|.+.|++++|...|++..+..-..+....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            55667788888999999999999999998853  43    6788888999999999999999999998764211123566


Q ss_pred             HHHHHHHHHh--------cCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010          244 YTILISSYCK--------YGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDV-VAYNCLIDGCCKTYRIERALELFDDMN  314 (451)
Q Consensus       244 ~~~li~~~~~--------~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~  314 (451)
                      +..+..++..        .|           ++++|...|++..+.  .|+. ....++..              +..+.
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~  144 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQT-----------DTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELR  144 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCH-----------HHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHH
T ss_pred             HHHHHHHHHHhcccccccch-----------hHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHH
Confidence            7778888888        77           999999999999875  3432 22222211              11111


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHc----------CCHHHHHHHHHH
Q 013010          315 KKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEA----------GRVLEARDFLAE  383 (451)
Q Consensus       315 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~----------g~~~~A~~l~~~  383 (451)
                      ..    ....+..+...|...|++++|+..|+++.+.....+ ....+..+..+|...          |++++|...|++
T Consensus       145 ~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~  220 (261)
T 3qky_A          145 AK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER  220 (261)
T ss_dssp             HH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence            10    012255677889999999999999999988653111 345677788888766          899999999999


Q ss_pred             HHhCCCCCC----HHHHHHHHHHHHhcCCC
Q 013010          384 LVDGGSVPR----EYTYKLVCDALNAAEEP  409 (451)
Q Consensus       384 m~~~g~~p~----~~t~~~li~~~~~~g~~  409 (451)
                      .++..  |+    ...+..+-..+.+.|++
T Consensus       221 ~~~~~--p~~~~~~~a~~~l~~~~~~~~~~  248 (261)
T 3qky_A          221 LLQIF--PDSPLLRTAEELYTRARQRLTEL  248 (261)
T ss_dssp             HHHHC--TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHC--CCChHHHHHHHHHHHHHHHHHHh
Confidence            98753  43    24455555555554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.75  E-value=9.4e-07  Score=76.06  Aligned_cols=169  Identities=9%  Similarity=-0.055  Sum_probs=98.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHH----------------HHHHHHhcCCHHHHHHHHHHHhhCC
Q 013010          136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTC----------------LIKVLGEEGLVNEALATFYRMKQFR  199 (451)
Q Consensus       136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g  199 (451)
                      -.....+.+.|++++|...|+...+...   .+...|..                +..+|.+.|++++|...|++..+..
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALNI---DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            3344556678888888888888777642   13444555                6677777777777777777776643


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010          200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       200 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~  279 (451)
                       +-+...|..+..+|...|++++|...|++..+..   |-+..++..+...|...|.         .....+...+....
T Consensus        85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~lg~~~~~~~~---------~~~~~~~~~~~~~~  151 (208)
T 3urz_A           85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE---ADNLAANIFLGNYYYLTAE---------QEKKKLETDYKKLS  151 (208)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHH---------HHHHHHHHHHC---
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHh
Confidence             2256667777777777777777777777776654   2356666666666655441         02333444444432


Q ss_pred             hcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 013010          280 FKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT  324 (451)
Q Consensus       280 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t  324 (451)
                      .  ..|....+...-.++...|++++|...|++..+.  .|+...
T Consensus       152 ~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~  192 (208)
T 3urz_A          152 S--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA  192 (208)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred             C--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence            1  1122222222333445566677777777766654  455443

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.71  E-value=2.3e-06  Score=77.38  Aligned_cols=182  Identities=10%  Similarity=0.020  Sum_probs=135.5

Q ss_pred             HHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 013010          151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC-RPDVYAYNVVINALCRVGNFNKARFLLEQ  229 (451)
Q Consensus       151 a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~  229 (451)
                      |...|++....+ .  .+..++..+...+...|++++|++++.+....|- .-+...+..++..+.+.|+.+.|.+.+++
T Consensus        85 a~~~l~~l~~~~-~--~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           85 NIEELENLLKDK-Q--NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDN  161 (310)
T ss_dssp             CCHHHHHTTTTS-C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-C--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            677777776654 2  2344556888999999999999999999876553 23677888899999999999999999999


Q ss_pred             hhhCCCCCCC-----CHHHHHHHHHHHHhc--CCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC
Q 013010          230 MELPGFRCPP-----DVYTYTILISSYCKY--GMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR  302 (451)
Q Consensus       230 m~~~g~~~~p-----~~~~~~~li~~~~~~--g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~  302 (451)
                      |.+..    |     +..+...|..+++..  |.         +++.+|..+|+++.+.  .|+..+-..++.++.+.|+
T Consensus       162 ~~~~~----~d~~~~~d~~l~~Laea~v~l~~g~---------~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~  226 (310)
T 3mv2_B          162 YTNAI----EDTVSGDNEMILNLAESYIKFATNK---------ETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN  226 (310)
T ss_dssp             HHHHS----CHHHHHHHHHHHHHHHHHHHHHHTC---------STTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC
T ss_pred             HHhcC----ccccccchHHHHHHHHHHHHHHhCC---------ccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC
Confidence            98764    6     356666677664332  21         1778999999999765  4554444556668999999


Q ss_pred             HHHHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          303 IERALELFDDMNKK-----GC---IP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       303 ~~~a~~~~~~m~~~-----g~---~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      +++|.+.++.+.+.     ..   .| |..+...+|..+...|+  +|.+++.++.+..
T Consensus       227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            99999999976653     11   24 56777566666666676  8999999999865

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.71  E-value=2.2e-06  Score=74.05  Aligned_cols=176  Identities=10%  Similarity=-0.027  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC----CHHHH
Q 013010          113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG----LVNEA  188 (451)
Q Consensus       113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A  188 (451)
                      .+|+..|+...+.    -+...+..|...|...+++++|.+.|++..+.|     +...+..|-..|.. +    +.++|
T Consensus         3 ~eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g-----~~~a~~~lg~~y~~-~g~~~~~~~A   72 (212)
T 3rjv_A            3 TEPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG-----DGDALALLAQLKIR-NPQQADYPQA   72 (212)
T ss_dssp             -CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred             chHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHc-CCCCCCHHHH
Confidence            3566677776653    366778888888888899999999999888876     45567777777777 6    89999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCC---HHHHHHHHHHHHh----cCCc
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPD---VYTYTILISSYCK----YGMQ  257 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~---~~~~~~li~~~~~----~g~~  257 (451)
                      ...|++..+.|   +...+..|-..|..    .+++++|..+|++..+.|    |+   ..++..|-..|..    .+  
T Consensus        73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~----~~~~~~~a~~~Lg~~y~~g~g~~~--  143 (212)
T 3rjv_A           73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS----ESDAAVDAQMLLGLIYASGVHGPE--  143 (212)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST----TSHHHHHHHHHHHHHHHHTSSSSC--
T ss_pred             HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC----CCcchHHHHHHHHHHHHcCCCCCC--
Confidence            99999888754   56777777777776    788899999999888776    42   6778888888877    44  


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHhCCC
Q 013010          258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT-Y-----RIERALELFDDMNKKGC  318 (451)
Q Consensus       258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~  318 (451)
                               ++++|...|++..+.  ..+...+..|-..|... |     +.++|...|+...+.|.
T Consensus       144 ---------d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          144 ---------DDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             ---------CHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             ---------CHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence                     788888888887765  22444566666666543 2     78888888888777663

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=2.4e-06  Score=73.77  Aligned_cols=176  Identities=13%  Similarity=-0.039  Sum_probs=111.3

Q ss_pred             HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC----ChHHHHH
Q 013010          150 GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG----NFNKARF  225 (451)
Q Consensus       150 ~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----~~~~a~~  225 (451)
                      +|.+.|++..+.|     +...+..|-..|...+++++|...|++..+.|   +...+..+-..|.. +    ++++|.+
T Consensus         4 eA~~~~~~aa~~g-----~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~   74 (212)
T 3rjv_A            4 EPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ   74 (212)
T ss_dssp             CTTHHHHHHHHTT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred             hHHHHHHHHHHCC-----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence            4566677666665     55567777777777788888888888877754   55666666666666 5    7777888


Q ss_pred             HHHHhhhCCCCCCCCHHHHHHHHHHHHh----cCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CCHhhHHHHHHHHHh-
Q 013010          226 LLEQMELPGFRCPPDVYTYTILISSYCK----YGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAYNCLIDGCCK-  299 (451)
Q Consensus       226 ~~~~m~~~g~~~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~li~~~~~-  299 (451)
                      +|++..+.|     +..++..|-..|..    .+           ++++|...|++..+.|.. .+...+..|-..|.. 
T Consensus        75 ~~~~A~~~g-----~~~a~~~Lg~~y~~g~g~~~-----------d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g  138 (212)
T 3rjv_A           75 LAEKAVEAG-----SKSGEIVLARVLVNRQAGAT-----------DVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG  138 (212)
T ss_dssp             HHHHHHHTT-----CHHHHHHHHHHHTCGGGSSC-----------CHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHCC-----CHHHHHHHHHHHHcCCCCcc-----------CHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence            877776665     44566666666654    33           667777777776665421 014556666666666 


Q ss_pred             ---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcC
Q 013010          300 ---TYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV-N-----EIDKAIEMMRKMQNLN  352 (451)
Q Consensus       300 ---~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~  352 (451)
                         .+++++|...|+...+.+  .+...+..|-..|... |     +.++|...|+...+.|
T Consensus       139 ~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          139 VHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             SSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence               566777777777666551  2333455555555432 2     6666666666666655

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.70  E-value=1.3e-06  Score=76.10  Aligned_cols=184  Identities=10%  Similarity=-0.031  Sum_probs=124.6

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH----HHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDV----YAY  207 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~  207 (451)
                      ...+..+...+.+.|++++|...|+.+.+.....+.....+..+..+|.+.|++++|+..|+++.+..  |+.    ..+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHH
Confidence            34455566777888999999999988887654332334567778888888999999999998887743  332    234


Q ss_pred             HHHHHHHHh------------------cCChHHHHHHHHHhhhCCCCCCCC-HHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010          208 NVVINALCR------------------VGNFNKARFLLEQMELPGFRCPPD-VYTYTILISSYCKYGMQTGCRKAIRRRI  268 (451)
Q Consensus       208 ~~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~~  268 (451)
                      ..+..++..                  .|++++|...|+++.+..    |+ ..++.+...    .+           .+
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~----P~~~~a~~a~~~----l~-----------~~  142 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY----PNSQYTTDATKR----LV-----------FL  142 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC----TTCTTHHHHHHH----HH-----------HH
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC----cCChhHHHHHHH----HH-----------HH
Confidence            334444433                  578999999999998875    33 222222111    11           11


Q ss_pred             HHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 013010          269 WEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN----RVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       269 ~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                      ..      .+..        ..-.+...|.+.|++++|...|+.+.+.  .|+    ...+..+..+|.+.|+.++|.+.
T Consensus       143 ~~------~~~~--------~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~  206 (225)
T 2yhc_A          143 KD------RLAK--------YEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKV  206 (225)
T ss_dssp             HH------HHHH--------HHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HH------HHHH--------HHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHH
Confidence            00      0000        1123556788999999999999998876  243    25678888999999999999999


Q ss_pred             HHHHHhcC
Q 013010          345 MRKMQNLN  352 (451)
Q Consensus       345 ~~~m~~~~  352 (451)
                      ++.+...+
T Consensus       207 ~~~l~~~~  214 (225)
T 2yhc_A          207 AKIIAANS  214 (225)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHhhC
Confidence            99888765

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.63  E-value=3.7e-06  Score=73.21  Aligned_cols=190  Identities=11%  Similarity=0.067  Sum_probs=111.0

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCH-HHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-P-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDV-YTY  244 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~-~~~  244 (451)
                      +...+..+...+...|++++|...|+++.+..-. | ....+..+..+|.+.|++++|...|+++.+..-. .+.. .++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence            3445666777888899999999999998874211 1 1356777888899999999999999998876421 1211 234


Q ss_pred             HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-H
Q 013010          245 TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNR-V  323 (451)
Q Consensus       245 ~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~  323 (451)
                      ..+..++.+.+..                .+.            .|..+-..+...|++++|...|+++.+.  .|+. .
T Consensus        82 ~~~g~~~~~~~~~----------------~~~------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~  131 (225)
T 2yhc_A           82 YMRGLTNMALDDS----------------ALQ------------GFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQY  131 (225)
T ss_dssp             HHHHHHHHHHHC------------------------------------------CCHHHHHHHHHHHHHHTT--CTTCTT
T ss_pred             HHHHHHHHhhhhh----------------hhh------------hhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChh
Confidence            4444444433210                000            1111222233455666666666666554  2321 1


Q ss_pred             HH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          324 TY-----------------NSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       324 t~-----------------~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      .+                 ..+...|.+.|++++|+..|+++.+.....| ....+..+..+|.+.|+.++|.+.++.+.
T Consensus       132 a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~  211 (225)
T 2yhc_A          132 TTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIA  211 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            11                 2334556677888888888887776542111 12456667777777888888888777776


Q ss_pred             hCC
Q 013010          386 DGG  388 (451)
Q Consensus       386 ~~g  388 (451)
                      ..+
T Consensus       212 ~~~  214 (225)
T 2yhc_A          212 ANS  214 (225)
T ss_dssp             HCC
T ss_pred             hhC
Confidence            653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.62  E-value=2.2e-06  Score=77.78  Aligned_cols=161  Identities=15%  Similarity=0.016  Sum_probs=76.1

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN  212 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  212 (451)
                      ..+..+...+.+.|++++|...+++..+....   +...+..+...+...|++++|...+++....  .|+.........
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~  192 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ---NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence            34444455555555555555555555554321   3344555555555555555555555555442  233322222111


Q ss_pred             -HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CCHhhH
Q 013010          213 -ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PDVVAY  290 (451)
Q Consensus       213 -~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~  290 (451)
                       .+...++.++|...|++.....   |.+...+..+...|...|           ++++|...|.+..+..-. .+...+
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~---P~~~~~~~~la~~l~~~g-----------~~~~A~~~l~~~l~~~p~~~~~~a~  258 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN---PEDAALATQLALQLHQVG-----------RNEEALELLFGHLRXDLTAADGQTR  258 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred             HHHHhhcccCccHHHHHHHHhcC---CccHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHhcccccccchHH
Confidence             2334444555555555544443   234455555555555555           555555555555443211 113344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q 013010          291 NCLIDGCCKTYRIERALELFDD  312 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~  312 (451)
                      ..+...+...|+.++|...|++
T Consensus       259 ~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          259 XTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHH
Confidence            5555555555555555544443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.62  E-value=4.2e-07  Score=93.10  Aligned_cols=174  Identities=10%  Similarity=-0.064  Sum_probs=137.1

Q ss_pred             HhcCCHHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          180 GEEGLVNEALATFYRMK--------QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       180 ~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      ...|++++|++.|++..        +. -+.+...|..+..+|...|++++|...|++..+..   +-+...|..+..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV---GWRWRLVWYRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---CCCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC---cchHHHHHHHHHHH
Confidence            67899999999999987        32 23456788888889999999999999999988765   34778889999999


Q ss_pred             HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010          252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRY  331 (451)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~  331 (451)
                      ...|           ++++|...|++..+.. +-+...+..+..++.+.|++++ .+.|++..+.. +-+...|..+-.+
T Consensus       478 ~~~g-----------~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~  543 (681)
T 2pzi_A          478 LLTG-----------DYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARA  543 (681)
T ss_dssp             HHHT-----------CHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHcC-----------CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHH
Confidence            9999           8899999999888753 2256778888889999999999 99999888763 2267788889999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010          332 YSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR  373 (451)
Q Consensus       332 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~  373 (451)
                      |.+.|++++|++.|++..+..  +-+...+..+..++...++
T Consensus       544 ~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred             HHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence            999999999999999887754  3345677777777766554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.62  E-value=9.8e-07  Score=81.01  Aligned_cols=232  Identities=8%  Similarity=0.015  Sum_probs=155.1

Q ss_pred             ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 013010          144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKA  223 (451)
Q Consensus       144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  223 (451)
                      ..|++++|.+++++..+....   +   +      +...+++++|...|...               ...|...|++++|
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~---~---~------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A   55 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT---S---F------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQA   55 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC---C---S------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc---c---c------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHH
Confidence            357788899988887765311   1   0      11147888888888765               4467788999999


Q ss_pred             HHHHHHhhhCCCCC---CCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC-CHhhHHHHHHHHHh
Q 013010          224 RFLLEQMELPGFRC---PPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP-DVVAYNCLIDGCCK  299 (451)
Q Consensus       224 ~~~~~~m~~~g~~~---~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~li~~~~~  299 (451)
                      ...|.+........   ..-..+|+.+...|.+.|+++.+..    .+++|++++.+.   |-.. -..+++.+...|..
T Consensus        56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~----~~~~Al~l~~~~---g~~~~~a~~~~~lg~~~~~  128 (307)
T 2ifu_A           56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ----YIEKASVMYVEN---GTPDTAAMALDRAGKLMEP  128 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH----HHHHHHHHHHTT---TCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH----HHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHc
Confidence            99888765432100   0124578889999999996665555    444555554322   2111 23567788888888


Q ss_pred             cCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHH
Q 013010          300 TYRIERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----SSSYTPIIHALCE  370 (451)
Q Consensus       300 ~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~~~~~li~~~~~  370 (451)
                       |++++|.+.|++..+.    |-.+ ...+++.+...|...|++++|+..|++........++    ...+..+...+..
T Consensus       129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~  207 (307)
T 2ifu_A          129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH  207 (307)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence             9999999999987643    2111 1467888899999999999999999988764211111    2356666677778


Q ss_pred             cCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCCchHHH
Q 013010          371 AGRVLEARDFLAELVDGGSVPR------EYTYKLVCDALNAAEEPSLLDD  414 (451)
Q Consensus       371 ~g~~~~A~~l~~~m~~~g~~p~------~~t~~~li~~~~~~g~~~~a~~  414 (451)
                      .|++++|...|++.. .  .|+      ......++.++ ..|+.+.+.+
T Consensus       208 ~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          208 RADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             TTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            899999999999987 3  232      22455566666 5677665555

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.61  E-value=1.6e-06  Score=86.96  Aligned_cols=153  Identities=10%  Similarity=-0.107  Sum_probs=87.6

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 013010          145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR  224 (451)
Q Consensus       145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  224 (451)
                      .|++++|.+.+++..+...   .+...|..+...|...|++++|.+.|++..+.. +-+...|..+..+|...|++++|.
T Consensus         2 ~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP---QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             ----------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            3566777777777665532   245566677777777777777777777776643 234666666777777777777777


Q ss_pred             HHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc---C
Q 013010          225 FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT---Y  301 (451)
Q Consensus       225 ~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~---g  301 (451)
                      +.|++..+..   +.+...+..+...|.+.|           ++++|.+.|++..+.. +.+...+..+...+...   |
T Consensus        78 ~~~~~al~~~---p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g  142 (568)
T 2vsy_A           78 VLLQQASDAA---PEHPGIALWLGHALEDAG-----------QAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWR  142 (568)
T ss_dssp             HHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHHhcC---CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccc
Confidence            7777766654   235666777777777777           6677777777666542 22455666666666666   7


Q ss_pred             CHHHHHHHHHHHHhC
Q 013010          302 RIERALELFDDMNKK  316 (451)
Q Consensus       302 ~~~~a~~~~~~m~~~  316 (451)
                      +.++|.+.+++..+.
T Consensus       143 ~~~~A~~~~~~al~~  157 (568)
T 2vsy_A          143 ALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             THHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhc
Confidence            777777777766655

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.61  E-value=4.6e-07  Score=73.60  Aligned_cols=143  Identities=7%  Similarity=-0.019  Sum_probs=112.8

Q ss_pred             CCchhhhcCHHHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010          103 RDPQKVTLGLNKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE  181 (451)
Q Consensus       103 ~~~~~~~~~~~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~  181 (451)
                      +..+...+++++|+..|.....   ..|+ ...+-.+...|.+.|++++|.+.|++..+....   +..+|..+..+|..
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~   77 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---DPKAHRFLGLLYEL   77 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence            4556777889999999998763   3333 445667899999999999999999999988633   67789999999999


Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH-HHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFL-LEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      .|++++|...|++..+.. +-+..+|..+...|.+.|++++|.+. +++..+..   |-+..+|......+...|
T Consensus        78 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           78 EENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---TTCHHHHHHHHHHHHTCC
T ss_pred             cCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---cCCHHHHHHHHHHHHHhC
Confidence            999999999999998853 23578899999999999999876654 57777654   346777877777776666

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.60  E-value=1.2e-06  Score=79.53  Aligned_cols=161  Identities=9%  Similarity=-0.012  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCC
Q 013010          206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVP  285 (451)
Q Consensus       206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~  285 (451)
                      .+..+...+...|++++|...|++.....   |-+...+..+...|.+.|           ++++|...+++....  .|
T Consensus       119 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~---P~~~~a~~~la~~~~~~g-----------~~~~A~~~l~~~~~~--~p  182 (287)
T 3qou_A          119 LXAQQAMQLMQESNYTDALPLLXDAWQLS---NQNGEIGLLLAETLIALN-----------RSEDAEAVLXTIPLQ--DQ  182 (287)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TSCHHHHHHHHHHHHHTT-----------CHHHHHHHHTTSCGG--GC
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CcchhHHHHHHHHHHHCC-----------CHHHHHHHHHhCchh--hc
Confidence            33344444444455555555544444432   123344444444444444           444444444444322  22


Q ss_pred             CHhhHHHHH-HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          286 DVVAYNCLI-DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       286 ~~~~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      +........ ..+...++.++|.+.+++..+.. +.+...+..+...|...|++++|...|.++.+......+...+..+
T Consensus       183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             chHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence            222111111 11333344444444444444331 1134444445555555555555555555554443111113344455


Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q 013010          365 IHALCEAGRVLEARDFLAE  383 (451)
Q Consensus       365 i~~~~~~g~~~~A~~l~~~  383 (451)
                      ...|...|+.++|...|++
T Consensus       262 ~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          262 QEILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHcCCCCcHHHHHHH
Confidence            5555555555554444443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.60  E-value=2.6e-06  Score=73.27  Aligned_cols=109  Identities=16%  Similarity=0.116  Sum_probs=56.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHH----------------HHHHHHhcCChHHHHHHHHHhhhCCC
Q 013010          173 TCLIKVLGEEGLVNEALATFYRMKQFRCRPD-VYAYNV----------------VINALCRVGNFNKARFLLEQMELPGF  235 (451)
Q Consensus       173 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g~  235 (451)
                      -.....+...|++++|...|++..+.  .|+ ...|..                +..+|.+.|++++|...|++..+.. 
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-   84 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-   84 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence            33445566788888888888887763  343 333433                4444555555555555555554433 


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH
Q 013010          236 RCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC  298 (451)
Q Consensus       236 ~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~  298 (451)
                        |-+...+..+...|...|           ++++|...|++..+.. +-+..++..+...|.
T Consensus        85 --p~~~~~~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~  133 (208)
T 3urz_A           85 --PNNVDCLEACAEMQVCRG-----------QEKDALRMYEKILQLE-ADNLAANIFLGNYYY  133 (208)
T ss_dssp             --TTCHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence              224445555555555555           4555555555544431 112334444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.58  E-value=8.4e-07  Score=74.06  Aligned_cols=62  Identities=18%  Similarity=0.072  Sum_probs=28.0

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKM  348 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m  348 (451)
                      ...+..+...+...|++++|...|+++.+..-.+ +...+..+...|...|+.++|...|++.
T Consensus       108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A          108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            3444444444445555555555555444432111 1334444444455555555555444443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.58  E-value=1.8e-06  Score=79.25  Aligned_cols=229  Identities=9%  Similarity=0.004  Sum_probs=152.6

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      .+.+++|.++++...+..  +.+         .+...++++.|...|...                 ...|...|++++|
T Consensus         4 ~~~~~eA~~~~~~a~k~~--~~~---------~~~~~~~~~~A~~~~~~a-----------------~~~~~~~g~~~~A   55 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL--KTS---------FMKWKPDYDSAASEYAKA-----------------AVAFKNAKQLEQA   55 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH--CCC---------SSSCSCCHHHHHHHHHHH-----------------HHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHc--ccc---------ccCCCCCHHHHHHHHHHH-----------------HHHHHHcCCHHHH
Confidence            456889999999887641  111         011257788888777654                 3456778999999


Q ss_pred             HHHHHHHhhC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCCCCHHHHHHHHHHHHhcCCchh
Q 013010          189 LATFYRMKQF----RCR-PDVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTYTILISSYCKYGMQTG  259 (451)
Q Consensus       189 ~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~p~~~~~~~li~~~~~~g~~~~  259 (451)
                      ...|.+..+.    |-. .-..+|+.+...|...|++++|...|++....    |-. .....+++.+...|.. |    
T Consensus        56 ~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~-~~~a~~~~~lg~~~~~-g----  129 (307)
T 2ifu_A           56 KDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP-DTAAMALDRAGKLMEP-L----  129 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH-HHHHHHHHHHHHHHTT-T----
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHc-C----
Confidence            9888877652    111 11457888889999999999999999876432    210 0124577888888887 8    


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHH
Q 013010          260 CRKAIRRRIWEANHLFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPN-RVTYNSFI  329 (451)
Q Consensus       260 ~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~t~~~li  329 (451)
                             ++++|...|++..+.    +-.. ...+++.+...|...|++++|.+.|++..+.    +..+. ..++..+.
T Consensus       130 -------~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g  202 (307)
T 2ifu_A          130 -------DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV  202 (307)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -------CHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence                   666777776655432    1111 1467888899999999999999999987653    22222 23666777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHHcCCHHHHHHH
Q 013010          330 RYYSVVNEIDKAIEMMRKMQNLNHGVPTS---SSYTPIIHALCEAGRVLEARDF  380 (451)
Q Consensus       330 ~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~l  380 (451)
                      ..+...|++++|...|++.. .....++.   .....++.++ ..|+.+.+.++
T Consensus       203 ~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          203 LVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            77888899999999999988 43211222   1344455555 56777666553

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.58  E-value=1.7e-06  Score=86.67  Aligned_cols=164  Identities=11%  Similarity=-0.001  Sum_probs=122.1

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR  261 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~  261 (451)
                      .|++++|.+.|++..+.. +-+...|..+...|...|++++|.+.|++..+..   +.+..++..+...|...|      
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~lg~~~~~~g------   71 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH---PGHPEAVARLGRVRWTQQ------   71 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS---TTCHHHHHHHHHHHHHTT------
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHCC------
Confidence            478999999999988753 3357889999999999999999999999998875   357889999999999999      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH
Q 013010          262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVV---NEI  338 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~---g~~  338 (451)
                           ++++|.+.+++..+.. +-+...+..+..+|.+.|++++|.+.+++..+.. +-+...+..+...|...   |+.
T Consensus        72 -----~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~  144 (568)
T 2vsy_A           72 -----RHAEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRAL  144 (568)
T ss_dssp             -----CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTH
T ss_pred             -----CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccH
Confidence                 9999999999988753 3356788899999999999999999999988763 23578888999999999   999


Q ss_pred             HHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          339 DKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       339 ~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      ++|.+.+++..+.+  +.+...|..+
T Consensus       145 ~~A~~~~~~al~~~--p~~~~~~~~l  168 (568)
T 2vsy_A          145 DVLSAQVRAAVAQG--VGAVEPFAFL  168 (568)
T ss_dssp             HHHHHHHHHHHHHT--CCCSCHHHHT
T ss_pred             HHHHHHHHHHHhcC--CcccChHHHh
Confidence            99999999999876  3344444443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.56  E-value=2.5e-06  Score=87.39  Aligned_cols=173  Identities=10%  Similarity=-0.079  Sum_probs=138.1

Q ss_pred             HccCChhHHHHHHHHHH--------HcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 013010          143 ARGNNVKGLWDFLKDMS--------RRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINAL  214 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~--------~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  214 (451)
                      ...|++++|.+.+++..        +..   +.+...+..+...|...|++++|++.|++..+.+ +-+...|..+..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~---p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF---SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC---TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc---ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHH
Confidence            77899999999999988        433   2356678889999999999999999999998753 33678899999999


Q ss_pred             HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHH
Q 013010          215 CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLI  294 (451)
Q Consensus       215 ~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li  294 (451)
                      ...|++++|...|++..+..   |-+...|..+..+|.+.|           ++++ .+.|++..+.. +-+...|..+.
T Consensus       478 ~~~g~~~~A~~~~~~al~l~---P~~~~~~~~lg~~~~~~g-----------~~~~-~~~~~~al~~~-P~~~~a~~~lg  541 (681)
T 2pzi_A          478 LLTGDYDSATKHFTEVLDTF---PGELAPKLALAATAELAG-----------NTDE-HKFYQTVWSTN-DGVISAAFGLA  541 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHS---TTCSHHHHHHHHHHHHHT-----------CCCT-TCHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHcC-----------ChHH-HHHHHHHHHhC-CchHHHHHHHH
Confidence            99999999999999998775   346788999999999999           6667 77777776642 33567888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010          295 DGCCKTYRIERALELFDDMNKKGCIPN-RVTYNSFIRYYSVVNE  337 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~  337 (451)
                      .++.+.|++++|.+.|++..+.  .|+ ...+..+..++...++
T Consensus       542 ~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          542 RARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            9999999999999999988765  464 5667777777766554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.56  E-value=6.3e-05  Score=68.43  Aligned_cols=221  Identities=10%  Similarity=-0.020  Sum_probs=149.6

Q ss_pred             CChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH----Hhc--
Q 013010          146 NNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG--LVNEALATFYRMKQFRCRPDVYAYNVVINAL----CRV--  217 (451)
Q Consensus       146 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~--  217 (451)
                      ...++|+++.+.+...+..   ...+|+.--..+...|  +++++++.++.+.... +-+..+|+.--..+    ...  
T Consensus        47 e~s~~aL~~t~~~L~~nP~---~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~  122 (306)
T 3dra_A           47 EYSERALHITELGINELAS---HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN  122 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred             CCCHHHHHHHHHHHHHCcH---HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence            3446788888888877633   4556777777777777  8888888888887753 23556666544444    444  


Q ss_pred             -CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH--HHHHHHHHHHhcCCCCCHhhHHHHH
Q 013010          218 -GNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW--EANHLFRLMLFKGFVPDVVAYNCLI  294 (451)
Q Consensus       218 -g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~li  294 (451)
                       +++++++.+++.+.+..   +-+-.+|+--.-.+.+.|           .++  ++++.++.+.+.. .-|-..|+--.
T Consensus       123 ~~~~~~EL~~~~~~l~~~---pkny~aW~~R~~vl~~l~-----------~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~  187 (306)
T 3dra_A          123 DFDPYREFDILEAMLSSD---PKNHHVWSYRKWLVDTFD-----------LHNDAKELSFVDKVIDTD-LKNNSAWSHRF  187 (306)
T ss_dssp             CCCTHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CTTCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhc-----------ccChHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence             67888888888887765   347777777777777777           555  7777888877654 23556666655


Q ss_pred             HHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC-CCCCChhhHHHHHH
Q 013010          295 DGCCKTYR------IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK-AIEMMRKMQNLN-HGVPTSSSYTPIIH  366 (451)
Q Consensus       295 ~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~~~~~m~~~~-~~~p~~~~~~~li~  366 (451)
                      ..+...++      ++++++.++.+..... -|...|+.+-..+.+.|+... +.++..+....+ ..+.+...+..+.+
T Consensus       188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~  266 (306)
T 3dra_A          188 FLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAK  266 (306)
T ss_dssp             HHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHH
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            55555555      7778888877776532 267778777777777776433 445555554432 11356677788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHh
Q 013010          367 ALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       367 ~~~~~g~~~~A~~l~~~m~~  386 (451)
                      .|.+.|+.++|.++++.+.+
T Consensus       267 ~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          267 IYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHccCCHHHHHHHHHHHHh
Confidence            88888888888888888775

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.53  E-value=1.5e-06  Score=72.54  Aligned_cols=78  Identities=14%  Similarity=0.160  Sum_probs=46.4

Q ss_pred             HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          306 ALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       306 a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      |...++...+.  .| +...+..+...|...|++++|...|+++.+......+...+..+...+...|+.++|...|++.
T Consensus        93 a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a  170 (176)
T 2r5s_A           93 ELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ  170 (176)
T ss_dssp             HHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            45555555543  23 4566666666677777777777777766665421112445666666666677776666666654


Q ss_pred             H
Q 013010          385 V  385 (451)
Q Consensus       385 ~  385 (451)
                      +
T Consensus       171 l  171 (176)
T 2r5s_A          171 L  171 (176)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.50  E-value=8.8e-05  Score=67.47  Aligned_cols=236  Identities=6%  Similarity=-0.056  Sum_probs=176.0

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccC--ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHH----Hhc---C
Q 013010          113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN--NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVL----GEE---G  183 (451)
Q Consensus       113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~----~~~---g  183 (451)
                      ++|++.++.+...  -+-+...|+.--..+...|  ++++++++++.+...+.+   +..+|+.--..+    ...   +
T Consensus        50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk---~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK---NYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT---CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc---cHHHHHHHHHHHHHHHHhccccC
Confidence            6899999988854  2224456787778888888  999999999999998744   455676655555    445   7


Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN--KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR  261 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~  261 (451)
                      ++++++++++.+.+.. +-+-.+|+--...+.+.|.++  ++++.++++.+...   -|..+|+--...+.+.+....  
T Consensus       125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~---~N~sAW~~R~~ll~~l~~~~~--  198 (306)
T 3dra_A          125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL---KNNSAWSHRFFLLFSKKHLAT--  198 (306)
T ss_dssp             CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHSSGGGCC--
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccccch--
Confidence            8999999999999864 458889988888888889888  99999999998874   488888877666666651000  


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCH
Q 013010          262 KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER-ALELFDDMNKKG--CIPNRVTYNSFIRYYSVVNEI  338 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~t~~~li~~~~~~g~~  338 (451)
                         ...++++++.++.+.... +-|...|+-+-..+.+.|+... +..+..++.+.+  -..+...+..+...|.+.|+.
T Consensus       199 ---~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~  274 (306)
T 3dra_A          199 ---DNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY  274 (306)
T ss_dssp             ---HHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred             ---hhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence               013889999999888764 4578889888888888887444 555666665433  134778899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          339 DKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       339 ~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      ++|.++++.+.+.-- +.....|+..
T Consensus       275 ~~A~~~~~~l~~~~D-pir~~yW~~~  299 (306)
T 3dra_A          275 NESRTVYDLLKSKYN-PIRSNFWDYQ  299 (306)
T ss_dssp             HHHHHHHHHHHHTTC-GGGHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-hHHHHHHHHH
Confidence            999999999986321 3344444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.49  E-value=1.2e-05  Score=69.03  Aligned_cols=131  Identities=12%  Similarity=-0.069  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013010          242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN  321 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  321 (451)
                      ..+..+...+...|           ++++|...|++.    +.|+...+..+...|...|++++|.+.++...+.. +.+
T Consensus         7 ~~~~~~g~~~~~~~-----------~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~   70 (213)
T 1hh8_A            7 ISLWNEGVLAADKK-----------DWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHL   70 (213)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHhC-----------CHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence            44566777788888           889999999866    36688899999999999999999999999988763 336


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP--------------TSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      ...+..+...|...|++++|.+.|++..+.....+              ....+..+...|...|++++|.+.|++..+.
T Consensus        71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            78899999999999999999999999988542111              2267888889999999999999999999875


Q ss_pred             C
Q 013010          388 G  388 (451)
Q Consensus       388 g  388 (451)
                      .
T Consensus       151 ~  151 (213)
T 1hh8_A          151 K  151 (213)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.49  E-value=1.1e-05  Score=73.18  Aligned_cols=164  Identities=9%  Similarity=0.007  Sum_probs=108.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-
Q 013010          210 VINALCRVGNFNKARFLLEQMELPGFRCPPDVY----TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-  284 (451)
Q Consensus       210 li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~----~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-  284 (451)
                      .+..+...|++++|.+++++....... .|+..    .+..+...+...+           ++++|...|++..+.... 
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~-----------~~~~Ai~~~~~al~~~~~~  148 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKV-----------DYEYCILELKKLLNQQLTG  148 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHHHHTTSS-----------CHHHHHHHHHHHHHTCCCC
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHHHHHccc-----------CHHHHHHHHHHHHHHhccc
Confidence            366778888899999988887764321 23321    2334555666666           778888888887763222 


Q ss_pred             CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Q 013010          285 PD----VVAYNCLIDGCCKTYRIERALELFDDMNK----K-GCIPN-RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN--  352 (451)
Q Consensus       285 ~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-g~~p~-~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~--  352 (451)
                      ++    ..+++.+...|...|++++|...|++..+    . +..+. ..+|..+...|.+.|++++|.+.+++..+..  
T Consensus       149 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          149 IDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             SCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            22    23578888888888888888888888763    1 22222 3467777788888888888888887765432  


Q ss_pred             --CCCCChhhHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 013010          353 --HGVPTSSSYTPIIHALCEAG-RVLEARDFLAELV  385 (451)
Q Consensus       353 --~~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~  385 (451)
                        ....-..+|..+-..|.+.| ++++|.+.+++..
T Consensus       229 ~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          229 INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             TTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence              10111456777777777888 4678877777654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.45  E-value=1.6e-05  Score=68.03  Aligned_cols=129  Identities=11%  Similarity=-0.094  Sum_probs=105.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      .+..+...+...|++++|...|++..    .|+...|..+...|...|++++|...|++.....   +.+...|..+..+
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---~~~~~~~~~lg~~   80 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGML   80 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---ccchHHHHHHHHH
Confidence            45566777888999999999998774    5688899999999999999999999999988764   3577889999999


Q ss_pred             HHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCC--------------CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGF--------------VP-DVVAYNCLIDGCCKTYRIERALELFDDMNK  315 (451)
Q Consensus       251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~--------------~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  315 (451)
                      |...|           ++++|...|++..+..-              .| ....+..+..+|...|++++|.+.|+...+
T Consensus        81 ~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           81 YYQTE-----------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHTT-----------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHcc-----------cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999           88899999988876421              11 126677888889999999999999999887


Q ss_pred             CC
Q 013010          316 KG  317 (451)
Q Consensus       316 ~g  317 (451)
                      ..
T Consensus       150 ~~  151 (213)
T 1hh8_A          150 MK  151 (213)
T ss_dssp             TC
T ss_pred             cC
Confidence            63

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.44  E-value=2.9e-05  Score=78.63  Aligned_cols=234  Identities=15%  Similarity=0.114  Sum_probs=164.4

Q ss_pred             HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHH-HHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010          113 NKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLW-DFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT  191 (451)
Q Consensus       113 ~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  191 (451)
                      +++..+|+.+...  ++.+...|-..+..+.+.|+.++|. +++++......   .+...|-..+...-+.|++++|.++
T Consensus       326 ~Rv~~~Ye~aL~~--~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P---~s~~Lwl~~a~~ee~~~~~e~aR~i  400 (679)
T 4e6h_A          326 ARMTYVYMQAAQH--VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP---NSAVLAFSLSEQYELNTKIPEIETT  400 (679)
T ss_dssp             HHHHHHHHHHHHH--TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4456677777754  4456777888888888888888896 99988877542   2555677777888888999999999


Q ss_pred             HHHHhhCC---------CCCC------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-CCCCCCCHHHHHHHHH
Q 013010          192 FYRMKQFR---------CRPD------------VYAYNVVINALCRVGNFNKARFLLEQMELP-GFRCPPDVYTYTILIS  249 (451)
Q Consensus       192 ~~~m~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~~p~~~~~~~li~  249 (451)
                      |+.+.+..         -.|+            ..+|...+....+.|+.+.|.++|.+..+. +. +.+...+..+.+.
T Consensus       401 yek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE  479 (679)
T 4e6h_A          401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIE  479 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHH
Confidence            99887631         0132            346777888888888999999999998876 32 1233333333333


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHH
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP--NRVTYNS  327 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~t~~~  327 (451)
                        .+.+.          +.+.|.++|+...+. ++-+...+...+......|+.+.|..+|+........+  ....|..
T Consensus       480 --~~~~~----------d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~  546 (679)
T 4e6h_A          480 --YHISK----------DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK  546 (679)
T ss_dssp             --HTTTS----------CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred             --HHhCC----------CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence              23331          467888888887765 34455666777777778899999999999888764322  3467888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 013010          328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHAL  368 (451)
Q Consensus       328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~  368 (451)
                      .+..-.+.|+.+.+..+.+++.+..   |+......+++-|
T Consensus       547 ~~~fE~~~G~~~~~~~v~~R~~~~~---P~~~~~~~f~~ry  584 (679)
T 4e6h_A          547 VIFFESKVGSLNSVRTLEKRFFEKF---PEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHTCCSHHHHHHHHHHHHHS---TTCCHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC---CCCcHHHHHHHHh
Confidence            8888888899999999999998864   5555555555444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.44  E-value=4.2e-05  Score=69.42  Aligned_cols=204  Identities=10%  Similarity=0.029  Sum_probs=138.2

Q ss_pred             CCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCH-
Q 013010          127 DFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDV-  204 (451)
Q Consensus       127 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-  204 (451)
                      ...|+..+...+...+.-.-  +   .++..   ...........+...+..+...|++++|..++++..+.. ..|+. 
T Consensus        41 ~~~~~~~~l~~i~~~l~~~~--~---~~~~~---~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~  112 (293)
T 3u3w_A           41 AVYPSMDILQGIAAKLQIPI--I---HFYEV---LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ  112 (293)
T ss_dssp             SCCCCHHHHHHHHHHHTCCT--H---HHHHT---TTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             CCCCCHHHHHHHHHHhCcCH--H---HHhCC---CCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence            34677777777766654221  1   12211   111101112233445778889999999999999988742 12221 


Q ss_pred             ---HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC----HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHH
Q 013010          205 ---YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD----VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRL  277 (451)
Q Consensus       205 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~----~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~  277 (451)
                         ..+..+...+...|++++|...|++....... .++    ..+|+.+...|...|           ++++|...|++
T Consensus       113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~-~~~~~~~~~~~~~lg~~y~~~g-----------~~~~A~~~~~~  180 (293)
T 3u3w_A          113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-GIDVYQNLYIENAIANIYAENG-----------YLKKGIDLFEQ  180 (293)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCC-CSCTTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHH
Confidence               23344666677778999999999998874322 133    347999999999999           77777777777


Q ss_pred             HHh----c-CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcC-CHHHHHHHH
Q 013010          278 MLF----K-GFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNK----KGCIPN-RVTYNSFIRYYSVVN-EIDKAIEMM  345 (451)
Q Consensus       278 m~~----~-~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g-~~~~A~~~~  345 (451)
                      ..+    . +..+. ..+|..+...|.+.|++++|.+.+++..+    .+..+. ..+|..+-..|.+.| ..++|.+.+
T Consensus       181 al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~  260 (293)
T 3u3w_A          181 ILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            663    1 22222 34788899999999999999999988654    233333 678888999999999 469999999


Q ss_pred             HHHHh
Q 013010          346 RKMQN  350 (451)
Q Consensus       346 ~~m~~  350 (451)
                      ++...
T Consensus       261 ~~Al~  265 (293)
T 3u3w_A          261 KKASF  265 (293)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.43  E-value=1.2e-06  Score=71.01  Aligned_cols=110  Identities=12%  Similarity=-0.042  Sum_probs=70.5

Q ss_pred             HHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC
Q 013010          139 GIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG  218 (451)
Q Consensus       139 l~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  218 (451)
                      ...+...|++++|...+.......   +.+...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|...|
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~---p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSP---RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSH---HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcChHHHHHHHHHHhcccC---cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence            344455667777777776655432   1234455566777777777777777777776643 225667777777777777


Q ss_pred             ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          219 NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       219 ~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      ++++|...|++..+..   |-+..+|..+...|.+.|
T Consensus        80 ~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~~  113 (150)
T 4ga2_A           80 NTDKAVECYRRSVELN---PTQKDLVLKIAELLCKND  113 (150)
T ss_dssp             CHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcC
Confidence            7777777777776654   235667777777777777

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.42  E-value=1.1e-05  Score=62.06  Aligned_cols=115  Identities=11%  Similarity=0.107  Sum_probs=94.9

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ...+..+...+...|++++|.+.++++.+...   .+..++..+...+...|++++|..+|+++.+.. +.+..++..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   84 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLG   84 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHH
Confidence            56788888999999999999999999988752   256678899999999999999999999998753 34688899999


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHh
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCK  253 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~  253 (451)
                      ..|...|++++|...|+++....   +.+...+..+...+..
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           85 NAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHh
Confidence            99999999999999999988765   2455666666555544

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.38  E-value=2e-05  Score=64.29  Aligned_cols=130  Identities=11%  Similarity=-0.058  Sum_probs=103.6

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ...+..+...+...|++++|...++...+....   +..++..+...+...|++++|...|++..+.. +.+...|..+.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a   88 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS---NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRA   88 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            345777888889999999999999999887532   56788899999999999999999999998753 34678899999


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH--HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI--LISSYCKYGMQTGCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~--li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~  279 (451)
                      .++...|++++|...|++.....   +.+...+..  +...+.+.|           ++++|...+....
T Consensus        89 ~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~~~~-----------~~~~A~~~~~~~~  144 (166)
T 1a17_A           89 ASNMALGKFRAALRDYETVVKVK---PHDKDAKMKYQECNKIVKQK-----------AFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHHHH-----------HHHHHHHcccchH
Confidence            99999999999999999998765   235555533  333466666           7888888877654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.36  E-value=2.5e-05  Score=60.00  Aligned_cols=115  Identities=16%  Similarity=0.157  Sum_probs=92.0

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH  366 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  366 (451)
                      ...+..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|..+++++.+..  +.+...+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~   85 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGN   85 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHH
Confidence            4667788888999999999999999988763 2367888889999999999999999999998875  567788889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          367 ALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA  405 (451)
Q Consensus       367 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~  405 (451)
                      .+...|++++|...++++.+.. +.+...+..+...+..
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           86 AYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence            9999999999999999988653 2234455555555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.35  E-value=0.00063  Score=62.67  Aligned_cols=231  Identities=10%  Similarity=0.022  Sum_probs=160.3

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc-C-ChH
Q 013010          145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVINALCRV-G-NFN  221 (451)
Q Consensus       145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~  221 (451)
                      .+..++|+++++.+...+..   +..+|+.--..+...| .+++++++++.+.... +-+..+|+.--..+... + +++
T Consensus        67 ~e~se~AL~lt~~~L~~nP~---~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPA---HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             CCCCHHHHHHHHHHHHhCch---hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            44557899999999998743   5667888777777788 5999999999999865 34788888877777776 6 889


Q ss_pred             HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010          222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY  301 (451)
Q Consensus       222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  301 (451)
                      +++++++.+.+..   +-|..+|+--.-.+.+.|..+.+.   ...+.++++.++++.+.. .-|...|+-.-..+.+.+
T Consensus       143 ~EL~~~~k~L~~d---pkNy~AW~~R~wvl~~l~~~~~~~---~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~  215 (349)
T 3q7a_A          143 SEIEYIHGSLLPD---PKNYHTWAYLHWLYSHFSTLGRIS---EAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP  215 (349)
T ss_dssp             HHHHHHHHHTSSC---TTCHHHHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhccccccc---hhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence            9999999999876   347788876555555555111000   013448888999888764 347778887777777777


Q ss_pred             C-------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC--
Q 013010          302 R-------IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI--------------------DKAIEMMRKMQNLN--  352 (451)
Q Consensus       302 ~-------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~--------------------~~A~~~~~~m~~~~--  352 (451)
                      +       ++++++.+++..... +-|...|+.+-..+.+.|+.                    ....+...++....  
T Consensus       216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (349)
T 3q7a_A          216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLP  294 (349)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCC
T ss_pred             ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccc
Confidence            6       678888888877663 22677887766666666543                    33333333333322  


Q ss_pred             --CCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          353 --HGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       353 --~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                        ...++......|.+.|...|+.++|.++++.+.+.
T Consensus       295 ~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          295 EDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             SSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence              11466777888888888888888899888888644

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.34  E-value=5e-05  Score=68.89  Aligned_cols=170  Identities=11%  Similarity=-0.031  Sum_probs=118.3

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCc---cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---CCC--H
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELV---TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC---RPD--V  204 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~  204 (451)
                      ..+...+..+...|++++|.+.+....+.......   ....+..+...+...|++++|+..|++..+...   .+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            34555677888899999999999888776432110   112344455667788999999999998875321   122  4


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhhh---CCCCCCC--CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHH
Q 013010          205 YAYNVVINALCRVGNFNKARFLLEQMEL---PGFRCPP--DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLML  279 (451)
Q Consensus       205 ~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~~~p--~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~  279 (451)
                      .+|+.+...|...|++++|...|++...   .... .+  ...+|..+...|.+.|           ++++|...+++..
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y~~~~-----------~y~~Al~~~~kal  223 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKALYLDS-----------RYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHHHHHh-----------hHHHHHHHHHHHH
Confidence            5888999999999999999999988762   2100 01  2258888999999999           7777777777655


Q ss_pred             hc----CCCCC-HhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 013010          280 FK----GFVPD-VVAYNCLIDGCCKTYRIERA-LELFDDMN  314 (451)
Q Consensus       280 ~~----~~~~~-~~~~~~li~~~~~~g~~~~a-~~~~~~m~  314 (451)
                      +.    +.... ..+|..+..+|.+.|++++| ...++...
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            32    11111 56677788888888998888 66666544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.33  E-value=6.6e-05  Score=76.08  Aligned_cols=219  Identities=8%  Similarity=-0.037  Sum_probs=163.2

Q ss_pred             HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHH
Q 013010          186 NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR-FLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAI  264 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~  264 (451)
                      +.+..+|++.... ++-+...|-.....+...|+.++|. ++|++....   +|.+...|-..+....+.|         
T Consensus       326 ~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~---~P~s~~Lwl~~a~~ee~~~---------  392 (679)
T 4e6h_A          326 ARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC---IPNSAVLAFSLSEQYELNT---------  392 (679)
T ss_dssp             HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT---------
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhC---------
Confidence            4566778887764 4457888888888888899999996 999998864   4567777888888888999         


Q ss_pred             HHHHHHHHHHHHHHHhcC---------CCCC------------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCH
Q 013010          265 RRRIWEANHLFRLMLFKG---------FVPD------------VVAYNCLIDGCCKTYRIERALELFDDMNKK-GCIPNR  322 (451)
Q Consensus       265 ~~~~~~a~~~~~~m~~~~---------~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~  322 (451)
                        +++.|.++|+.+.+..         -.|+            ..+|-..+....+.|..+.|..+|....+. +. +..
T Consensus       393 --~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~  469 (679)
T 4e6h_A          393 --KIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTP  469 (679)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCT
T ss_pred             --CHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CCh
Confidence              6677777777665421         0132            235777777777889999999999999876 21 123


Q ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHH
Q 013010          323 VTYNSFIRYYSVV-NEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP--REYTYKLV  399 (451)
Q Consensus       323 ~t~~~li~~~~~~-g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~l  399 (451)
                      ..|......-.+. ++.+.|..+|+...+..  +-+...+...++.....|+.+.|..+|++.+.....+  ....|...
T Consensus       470 ~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~  547 (679)
T 4e6h_A          470 DIYLENAYIEYHISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKV  547 (679)
T ss_dssp             HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            3443333222333 55999999999998874  4456677788888888999999999999998765422  34678999


Q ss_pred             HHHHHhcCCCchHHHHHHHHHHh
Q 013010          400 CDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       400 i~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      ++--.+.|+.+.+..+..++.+.
T Consensus       548 ~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          548 IFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999998888853

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.33  E-value=1.1e-05  Score=68.32  Aligned_cols=98  Identities=9%  Similarity=-0.058  Sum_probs=49.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC----
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT----  357 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----  357 (451)
                      .++..+...+...|++++|.+.+++..+.    +-.|  ....+..+-..|...|++++|...+++.........+    
T Consensus        67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  146 (203)
T 3gw4_A           67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI  146 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence            34455555555666666666655554332    1111  1234455555566666666666666655432110111    


Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          358 SSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       358 ~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      ..++..+...+...|++++|.+.+++..
T Consensus       147 ~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          147 ACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            1234555556666666666666665544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.33  E-value=8.2e-06  Score=69.24  Aligned_cols=159  Identities=8%  Similarity=-0.104  Sum_probs=106.3

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCCCCHHHHHHHHHHHHhcC
Q 013010          180 GEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL----PGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       180 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      ...|++++|.++++.+.. .......+++.+...+...|++++|...+++...    .+.. +....++..+...|...|
T Consensus         3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDH-TAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcC
Confidence            356778888885544433 1123466777777788888888888888877655    1211 134567888888899999


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHhc----CCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHH
Q 013010          256 MQTGCRKAIRRRIWEANHLFRLMLFK----GFVP--DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP-NRVT  324 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t  324 (451)
                                 ++++|...+++..+.    +-.+  ....+..+...+...|++++|...+++..+.    +... -..+
T Consensus        81 -----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  149 (203)
T 3gw4_A           81 -----------NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA  149 (203)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             -----------CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence                       666666666655432    2111  2455778888899999999999999887642    2111 1344


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010          325 YNSFIRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       325 ~~~li~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                      +..+-..|...|++++|.+.+++..+.
T Consensus       150 ~~~la~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          150 FRGLGDLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            677888899999999999999887653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.31  E-value=3.9e-05  Score=69.64  Aligned_cols=170  Identities=10%  Similarity=0.032  Sum_probs=120.7

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC-CCC--
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRC-PPD--  240 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~p~--  240 (451)
                      ...+...+..+...|++++|.+.+.+..+..-..+     ...+..+...+...|++++|...+.+........ .+.  
T Consensus        75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34566678888999999999999998877432211     1223445566778899999999999887543210 122  


Q ss_pred             HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc-CCCCC-----HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010          241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK-GFVPD-----VVAYNCLIDGCCKTYRIERALELFDDMN  314 (451)
Q Consensus       241 ~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~-~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~  314 (451)
                      ..+|+.+...|...|           ++++|...|++..+. ...|+     ..+++.+...|...|++++|.+.+++..
T Consensus       155 ~~~~~~lg~~y~~~~-----------~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          155 LYIENAIANIYAENG-----------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            458899999999999           888888888876621 01122     2578888889999999999999998865


Q ss_pred             hC----CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 013010          315 KK----GCIP-NRVTYNSFIRYYSVVNEIDKA-IEMMRKMQ  349 (451)
Q Consensus       315 ~~----g~~p-~~~t~~~li~~~~~~g~~~~A-~~~~~~m~  349 (451)
                      +.    +... -..+|..+-..|.+.|+.++| ...+++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            43    2111 156777888888888888888 66676654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.31  E-value=6.3e-06  Score=74.54  Aligned_cols=81  Identities=11%  Similarity=-0.153  Sum_probs=38.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      .+..+...+...|++++|...|++..+.. +-+...|..+..+|.+.|++++|...+++..+..   +.+...+..+..+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~lg~~   81 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD---GQSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC---TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence            34444444455555555555555544421 1134444445555555555555555555544432   2244445555555


Q ss_pred             HHhcC
Q 013010          251 YCKYG  255 (451)
Q Consensus       251 ~~~~g  255 (451)
                      |...|
T Consensus        82 ~~~~g   86 (281)
T 2c2l_A           82 QLEME   86 (281)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            55555

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.31  E-value=2.6e-05  Score=63.52  Aligned_cols=128  Identities=8%  Similarity=-0.076  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 013010          242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN  321 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  321 (451)
                      ..+..+...+...|           ++++|...|++..+.. +.+..++..+...+...|++++|.+.++...+.. +.+
T Consensus        14 ~~~~~~a~~~~~~~-----------~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~   80 (166)
T 1a17_A           14 EELKTQANDYFKAK-----------DYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKY   80 (166)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccc
Confidence            34555556666666           6666666666665432 2245566666666666777777777776665542 224


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHH--HHHHHHHHcCCHHHHHHHHHHH
Q 013010          322 RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYT--PIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       322 ~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~--~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      ...+..+...|...|++++|...+++..+..  +.+...+.  .....+...|++++|.+.+...
T Consensus        81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           81 IKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5566666666666777777777776666654  22333332  2233355566666666666544

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.29  E-value=2.1e-05  Score=61.43  Aligned_cols=108  Identities=11%  Similarity=0.027  Sum_probs=89.6

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVIN  212 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  212 (451)
                      ..+......|.+.|++++|.+.|++..+...   .+...|..+..+|.+.|++++|+..|++..+.+ +.+...|..+..
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~   89 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAA   89 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Confidence            4566788889999999999999999988763   367789999999999999999999999998854 346788999999


Q ss_pred             HHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          213 ALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       213 ~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      +|...|++++|.+.|++..+..   |-+...+..|
T Consensus        90 ~~~~~~~~~~A~~~~~~al~l~---P~~~~a~~~l  121 (126)
T 4gco_A           90 CLVAMREWSKAQRAYEDALQVD---PSNEEAREGV  121 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHC---cCCHHHHHHH
Confidence            9999999999999999988765   2355555444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.28  E-value=1.9e-05  Score=61.59  Aligned_cols=121  Identities=9%  Similarity=-0.084  Sum_probs=98.7

Q ss_pred             CCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 013010          128 FFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAY  207 (451)
Q Consensus       128 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  207 (451)
                      .+.+...+..+...+.+.|++++|...+++..+...   .+...+..+...+...|++++|...|++..+.. +.+...+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~   87 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGY   87 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHH
Confidence            344567788899999999999999999999988752   256788999999999999999999999998753 3467889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          208 NVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       208 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      ..+..++...|++++|.+.|++.....   +.+...+..+...+.+.|
T Consensus        88 ~~la~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           88 TRKAAALEAMKDYTKAMDVYQKALDLD---SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC---GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHhC---CCchHHHHHHHHHHHHhc
Confidence            999999999999999999999988764   234566666666666544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.27  E-value=4.6e-05  Score=59.01  Aligned_cols=120  Identities=14%  Similarity=0.076  Sum_probs=99.7

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII  365 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  365 (451)
                      +...+..+...+...|++++|...++...... +.+...+..+...|...|++++|.+.+++.....  +.+...+..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~   87 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID--PAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC--ccCHHHHHHHH
Confidence            45667778888899999999999999987763 2367888889999999999999999999998875  45677888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCC
Q 013010          366 HALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEP  409 (451)
Q Consensus       366 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~  409 (451)
                      ..+...|++++|.+.+++..+.. +.+...+..+..++.+.|+.
T Consensus        88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            99999999999999999988753 23567788888888887765

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.26  E-value=2.5e-05  Score=60.58  Aligned_cols=118  Identities=13%  Similarity=-0.024  Sum_probs=98.5

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+...|++++|...+++......   .+...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~   86 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRM   86 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHH
Confidence            456677788889999999999999999988752   256678899999999999999999999998753 3457888899


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      ...+...|++++|...|++.....   +.+...+..+..++.+.|
T Consensus        87 ~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           87 GLALSSLNKHVEAVAYYKKALELD---PDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHh
Confidence            999999999999999999988765   246777888888887766

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.25  E-value=6.5e-06  Score=74.40  Aligned_cols=194  Identities=11%  Similarity=-0.008  Sum_probs=131.8

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+.+.|++++|...++...+...   .+...|..+..+|.+.|++++|...+++..+.. +-+...+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l   78 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   78 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            556788888999999999999999999988753   266789999999999999999999999998853 3467888999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCCCCCCCCH-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhh
Q 013010          211 INALCRVGNFNKARFLLEQMELPGFRCPPDV-YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVA  289 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~-~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  289 (451)
                      ..+|...|++++|...|++..+..    |+. ..+...+....+..              .+. -+..........+...
T Consensus        79 g~~~~~~g~~~~A~~~~~~al~l~----p~~~~~~~~~~~~~~~~~--------------~~~-~~~~~~~~~~~~~~~i  139 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQRAYSLA----KEQRLNFGDDIPSALRIA--------------KKK-RWNSIEERRIHQESEL  139 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH----HHTTCCCCSHHHHHHHHH--------------HHH-HHHHHHHTCCCCCCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC----ccchhhHHHHHHHHHHHH--------------HHH-HHHHHHHHHHhhhHHH
Confidence            999999999999999999887643    211 11111122211111              111 1122233333444444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 013010          290 YNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVT-YNSFIRYYSVV-NEIDKAIEMMRKMQNL  351 (451)
Q Consensus       290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t-~~~li~~~~~~-g~~~~A~~~~~~m~~~  351 (451)
                      ...+ ..+ ..|+.++|.+.++...+.  .|+... ...+-..+.+. +.+++|.++|.+..+.
T Consensus       140 ~~~l-~~l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          140 HSYL-TRL-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHH-HHH-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHH-HHH-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            3333 333 368889999888877765  455433 33343334444 6788999999887653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.25  E-value=4.4e-05  Score=68.04  Aligned_cols=197  Identities=5%  Similarity=-0.116  Sum_probs=127.5

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHH-------HHHHHccCChhHHHHHHHHHHHcC---CCCCcc----------
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEM-------GIVFARGNNVKGLWDFLKDMSRRG---NGELVT----------  168 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~----------  168 (451)
                      .++...|.+.|..+.+.  -+-....|..+       ...+.+.++..++...+..-....   .....+          
T Consensus        19 ~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           19 PMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             CCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            56789999999999864  22234566666       455555555555555554443311   000011          


Q ss_pred             -----HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCC--H
Q 013010          169 -----TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPD--V  241 (451)
Q Consensus       169 -----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~--~  241 (451)
                           ...+-.+...+...|++++|.++|+.+...+  |+....-.+...+.+.+++++|+..|+......   .|.  .
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---d~~~~~  171 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP---DKFLAG  171 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS---CHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC---CcccHH
Confidence                 1233445667778899999999998887643  544355555667888999999999998554432   121  2


Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 013010          242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD--VVAYNCLIDGCCKTYRIERALELFDDMNKKGCI  319 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  319 (451)
                      ..+..+-.++.+.|           ++++|+..|++.......|.  .........++.+.|+.++|..+|+++...  .
T Consensus       172 ~a~~~LG~al~~LG-----------~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~  238 (282)
T 4f3v_A          172 AAGVAHGVAAANLA-----------LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--H  238 (282)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--S
T ss_pred             HHHHHHHHHHHHCC-----------CHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence            36777888888888           88888888888875433243  234555666777888999999999888876  3


Q ss_pred             CCHHHH
Q 013010          320 PNRVTY  325 (451)
Q Consensus       320 p~~~t~  325 (451)
                      |+...+
T Consensus       239 P~~~~~  244 (282)
T 4f3v_A          239 PEPKVA  244 (282)
T ss_dssp             CCHHHH
T ss_pred             CcHHHH
Confidence            553333

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.25  E-value=0.00098  Score=65.15  Aligned_cols=280  Identities=9%  Similarity=-0.041  Sum_probs=158.6

Q ss_pred             cCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCC-hhHHHHHHHHHHHc-CCCCCccHHhHHHHHHHHH----hcC
Q 013010          110 LGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN-VKGLWDFLKDMSRR-GNGELVTTSSVTCLIKVLG----EEG  183 (451)
Q Consensus       110 ~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~m~~~-~~~~~~~~~~~~~li~~~~----~~g  183 (451)
                      +..+.|..+|+....   ..|+...|...+....+.+. .+.+..+|+..... |.. ..+...|...+..+.    ..|
T Consensus        28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d-~~s~~iW~~Yi~f~~~~~~~~~  103 (493)
T 2uy1_A           28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENY-WDSYGLYKEYIEEEGKIEDEQT  103 (493)
T ss_dssp             TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTC-TTCHHHHHHHHHHTSSCSSHHH
T ss_pred             CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCC-cccHHHHHHHHHHHHhchhhhH
Confidence            457899999999885   35699999988888777663 46677788877664 322 235567887777654    346


Q ss_pred             CHHHHHHHHHHHhhCCCCCC--HHHHHHHHH--------------------------------------------HHHh-
Q 013010          184 LVNEALATFYRMKQFRCRPD--VYAYNVVIN--------------------------------------------ALCR-  216 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~--~~~~~~li~--------------------------------------------~~~~-  216 (451)
                      +++.+.++|++....  ++.  ...|.....                                            .|+. 
T Consensus       104 ~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~  181 (493)
T 2uy1_A          104 RIEKIRNGYMRALQT--PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDL  181 (493)
T ss_dssp             HHHHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence            788899999988873  221  111111110                                            0110 


Q ss_pred             -cCC---------hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC
Q 013010          217 -VGN---------FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD  286 (451)
Q Consensus       217 -~g~---------~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~  286 (451)
                       .++         .+.+..+|++.....   +-+...|...+.-+.+.|           +.+.|..++++....  +.+
T Consensus       182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~---p~~~~lW~~ya~~~~~~~-----------~~~~ar~i~erAi~~--P~~  245 (493)
T 2uy1_A          182 EMENGMKLGGRPHESRMHFIHNYILDSF---YYAEEVYFFYSEYLIGIG-----------QKEKAKKVVERGIEM--SDG  245 (493)
T ss_dssp             HHTCTTCCCHHHHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH--CCS
T ss_pred             HhcCCccCcchhhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhC--CCc
Confidence             011         123445666655532   345666777777777777           555666666655544  111


Q ss_pred             H----------------------------------------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010          287 V----------------------------------------VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN  326 (451)
Q Consensus       287 ~----------------------------------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  326 (451)
                      .                                        ..|-..+....+.+..+.|..+|+.. ... ..+...|.
T Consensus       246 ~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i  323 (493)
T 2uy1_A          246 MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFI  323 (493)
T ss_dssp             SHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHH
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHH
Confidence            1                                        12222233333455677777777776 221 12333333


Q ss_pred             HHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          327 SFIRYYSV-VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA  405 (451)
Q Consensus       327 ~li~~~~~-~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~  405 (451)
                      .....-.. .++.+.|..+|+...+...  -+...+...++-..+.|+.+.|..+|+...     -....|...++-=..
T Consensus       324 ~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~  396 (493)
T 2uy1_A          324 YCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFM  396 (493)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence            22111111 2357777777777766532  123344555665666777777777777752     245666666666666


Q ss_pred             cCCCchHHHHHHHHH
Q 013010          406 AEEPSLLDDGLRKRI  420 (451)
Q Consensus       406 ~g~~~~a~~~~~~~~  420 (451)
                      .|+.+.+..++++.+
T Consensus       397 ~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          397 VGSMELFRELVDQKM  411 (493)
T ss_dssp             HSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHH
Confidence            777776766666665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.25  E-value=6.1e-05  Score=67.16  Aligned_cols=188  Identities=9%  Similarity=-0.075  Sum_probs=124.7

Q ss_pred             ccCChhHHHHHHHHHHHcCCCCCccHHhHHHH-------HHHHHhcCCHHHHHHHHHHHhhCCCCCC-------------
Q 013010          144 RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCL-------IKVLGEEGLVNEALATFYRMKQFRCRPD-------------  203 (451)
Q Consensus       144 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------  203 (451)
                      ..++...|.+.|.+.......   ....|.-+       ...+...++..+++..+..-.+  +.|+             
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~---~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~   92 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES---ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYG   92 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTC
T ss_pred             cCCCHHHHHHHHHHHHHhChh---hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccc
Confidence            578999999999999988633   45567766       3444444444555544444433  2221             


Q ss_pred             ---------HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHH
Q 013010          204 ---------VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHL  274 (451)
Q Consensus       204 ---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~  274 (451)
                               ...+-.....+...|++++|.++|+.+...+    |+......+...+.+.+           ++++|+..
T Consensus        93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~----p~~~~~~~~a~l~~~~~-----------r~~dA~~~  157 (282)
T 4f3v_A           93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG----SEHLVAWMKAVVYGAAE-----------RWTDVIDQ  157 (282)
T ss_dssp             CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT----CHHHHHHHHHHHHHHTT-----------CHHHHHHH
T ss_pred             ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHcC-----------CHHHHHHH
Confidence                     1233445667788899999999998887755    54445566666777887           88888888


Q ss_pred             HHHHHhcCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          275 FRLMLFKGFVPD--VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       275 ~~~m~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      |+...... .|.  ...+..+-.++...|++++|+..|++.......|.  .......-.++.+.|+.++|..+|+++..
T Consensus       158 l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a  236 (282)
T 4f3v_A          158 VKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT  236 (282)
T ss_dssp             HTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            87443321 111  23566677788888888888888888775443253  23455566677788888888888888887


Q ss_pred             cC
Q 013010          351 LN  352 (451)
Q Consensus       351 ~~  352 (451)
                      ..
T Consensus       237 ~~  238 (282)
T 4f3v_A          237 TH  238 (282)
T ss_dssp             HS
T ss_pred             cC
Confidence            64

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.22  E-value=1.5e-05  Score=64.60  Aligned_cols=99  Identities=13%  Similarity=0.001  Sum_probs=61.2

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      +...+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++.....   |.+...|..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~---P~~~~~~~~l  110 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG---KNDYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---SSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---CCCcHHHHHH
Confidence            34455566666666666666666666666532 2245666666666666666666666666666554   2345566666


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      ..+|.+.|           ++++|...|+...+.
T Consensus       111 g~~~~~lg-----------~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          111 GQCQLRLK-----------APLKAKECFELVIQH  133 (151)
T ss_dssp             HHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHcC-----------CHHHHHHHHHHHHHh
Confidence            66666666           666666666666554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.22  E-value=1.9e-05  Score=65.62  Aligned_cols=123  Identities=9%  Similarity=-0.028  Sum_probs=78.6

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH-HHhcCC
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV-LGEEGL  184 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~-~~~~g~  184 (451)
                      +...+++++|+..|+.....  .+.+...+..+...|...|++++|...++...+....   +...+..+..+ +...|+
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~   94 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE---NAELYAALATVLYYQASQ   94 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred             hhhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHhcCC
Confidence            44556677777777776653  2345666777777777777777777777777665422   44556666666 666777


Q ss_pred             H--HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010          185 V--NEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       185 ~--~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      +  ++|...|++..+.. +-+...+..+...|...|++++|...|++.....
T Consensus        95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            6  77777777776643 2245666667777777777777777777776654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.20  E-value=5e-05  Score=59.12  Aligned_cols=100  Identities=13%  Similarity=-0.019  Sum_probs=64.2

Q ss_pred             ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHH
Q 013010          167 VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTI  246 (451)
Q Consensus       167 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~  246 (451)
                      .+...|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.+.+++.....   +.+...+..
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~   89 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE---PTFIKGYTR   89 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---TTCHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---CCchHHHHH
Confidence            345566666677777777777777777766542 2255666666666667777777777777666543   235566666


Q ss_pred             HHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          247 LISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       247 li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      +..+|.+.|           ++++|...|++..+.
T Consensus        90 la~~~~~~~-----------~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           90 KAAALEAMK-----------DYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh-----------hHHHHHHHHHHHHHh
Confidence            666676666           666666666666543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.20  E-value=1.3e-05  Score=64.87  Aligned_cols=100  Identities=9%  Similarity=-0.059  Sum_probs=87.8

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+.+.|++++|...|+.......   .+...|..+..+|...|++++|+..|++..+.. +-+...|..+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P---~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l  110 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF---YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT  110 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence            345677888899999999999999999999863   367789999999999999999999999998854 3357889999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCC
Q 013010          211 INALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      ..+|...|++++|...|++..+..
T Consensus       111 g~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          111 GQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999998865

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.18  E-value=1.8e-05  Score=65.71  Aligned_cols=116  Identities=11%  Similarity=0.091  Sum_probs=82.2

Q ss_pred             HccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHhcCCh-
Q 013010          143 ARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA-LCRVGNF-  220 (451)
Q Consensus       143 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~-  220 (451)
                      ...|++++|...++...+...   .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ 
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~   96 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANP---QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM   96 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCC---SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred             hhccCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence            346778888888888777652   255678888888888888888888888887643 2356677777777 6678887 


Q ss_pred             -HHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHH
Q 013010          221 -NKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIR  265 (451)
Q Consensus       221 -~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~  265 (451)
                       ++|...|++.....   |.+...+..+...|...|+++.+...+.
T Consensus        97 ~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~  139 (177)
T 2e2e_A           97 TAQTRAMIDKALALD---SNEITALMLLASDAFMQANYAQAIELWQ  139 (177)
T ss_dssp             CHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence             88888888887764   2456777788888888888877777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.18  E-value=5.8e-05  Score=58.92  Aligned_cols=100  Identities=12%  Similarity=0.096  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA  367 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  367 (451)
                      ..+...-..|.+.|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|+..+++..+..  +.+...|..+..+
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~   90 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAAC   90 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHH
Confidence            456667788899999999999999987763 2368888889999999999999999999998876  5677889999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010          368 LCEAGRVLEARDFLAELVDGGSVPR  392 (451)
Q Consensus       368 ~~~~g~~~~A~~l~~~m~~~g~~p~  392 (451)
                      |...|++++|.+.|++.++.  .|+
T Consensus        91 ~~~~~~~~~A~~~~~~al~l--~P~  113 (126)
T 4gco_A           91 LVAMREWSKAQRAYEDALQV--DPS  113 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CcC
Confidence            99999999999999998874  454

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.15  E-value=0.00097  Score=61.39  Aligned_cols=226  Identities=8%  Similarity=-0.061  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccC-ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhc-C-CHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN-NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEE-G-LVNEA  188 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A  188 (451)
                      -++|+++++.+...  -+-+...|+.--..+...| .+++++++++.+...+.+   +..+|+.--..+... + +++++
T Consensus        70 se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK---ny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           70 SERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK---SYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC---CHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhcCCChHHH
Confidence            36899999988864  2334556777777777778 599999999999998744   677888877777776 7 88999


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhh
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFN--------KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGC  260 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~  260 (451)
                      +++++.+.+.. +-|..+|+--...+.+.|.++        ++++.++++.+...   -|..+|+-....+.+.+.....
T Consensus       145 L~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp---~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          145 IEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG---RNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHhccccccc
Confidence            99999999865 447888887666666666666        89999999998764   4888998888887777632111


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC---
Q 013010          261 RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRI--------------------ERALELFDDMNKKG---  317 (451)
Q Consensus       261 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g---  317 (451)
                      .    ..++++++.+++..... +-|...|+-+-..+.+.|+.                    ....+...++...+   
T Consensus       221 ~----~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (349)
T 3q7a_A          221 S----RSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE  295 (349)
T ss_dssp             H----HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred             h----HHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence            1    14788889988887653 44677888777777766653                    23333333333322   


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010          318 --CIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       318 --~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                        -.++......|...|...|+.++|.++++.+.+.
T Consensus       296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence              1357888899999999999999999999999754

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.13  E-value=7.1e-05  Score=69.43  Aligned_cols=132  Identities=14%  Similarity=0.015  Sum_probs=105.4

Q ss_pred             CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC--------------HhhHHHHHHHHHhcCCHHH
Q 013010          240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD--------------VVAYNCLIDGCCKTYRIER  305 (451)
Q Consensus       240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~li~~~~~~g~~~~  305 (451)
                      +...+..+...|.+.|           ++++|...|++..+..-...              ...|..+..+|.+.|++++
T Consensus       146 ~a~~~~~~g~~~~~~g-----------~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~  214 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEG-----------KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA  214 (336)
T ss_dssp             HHHHHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            5677888899999999           89999999998886531111              4788888888999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH-HHHHHHH
Q 013010          306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA-RDFLAEL  384 (451)
Q Consensus       306 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A-~~l~~~m  384 (451)
                      |...++...+.. +.+...|..+-.+|...|++++|...|++..+..  +-+...+..+...+.+.|+.++| ..++..|
T Consensus       215 A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          215 AIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999888763 2367888888889999999999999999988875  45677888888888888888888 4466666


Q ss_pred             H
Q 013010          385 V  385 (451)
Q Consensus       385 ~  385 (451)
                      .
T Consensus       292 ~  292 (336)
T 1p5q_A          292 F  292 (336)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.11  E-value=0.00013  Score=55.27  Aligned_cols=109  Identities=12%  Similarity=-0.017  Sum_probs=88.6

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ...+..+...+...|++++|...++........   +...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a   79 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH---NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA   79 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            456777888889999999999999999887532   56678889999999999999999999998753 33678888999


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      .++...|++++|.+.|++..+..   +.+...+..+
T Consensus        80 ~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~l  112 (118)
T 1elw_A           80 AALEFLNRFEEAKRTYEEGLKHE---ANNPQLKEGL  112 (118)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTC---TTCHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHcC---CCCHHHHHHH
Confidence            99999999999999999988765   2344444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.10  E-value=7.3e-05  Score=69.35  Aligned_cols=120  Identities=12%  Similarity=-0.086  Sum_probs=58.5

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010          170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----------------VYAYNVVINALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      ..|..+...|.+.|++++|...|++..+..  |+                ..+|..+..+|.+.|++++|...|++....
T Consensus       148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          148 TIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344455555555555555555555554422  22                244555555555555555555555555444


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHH
Q 013010          234 GFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERA  306 (451)
Q Consensus       234 g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a  306 (451)
                      .   |.+..+|..+..+|...|           ++++|...|++..+.. +-+...+..+..++.+.|+.++|
T Consensus       226 ~---p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          226 D---SNNEKGLSRRGEAHLAVN-----------DFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             C---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             C---CCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            3   234455555555555555           5555555555544431 12334444444445555555444

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.06  E-value=3e-05  Score=62.54  Aligned_cols=100  Identities=7%  Similarity=-0.076  Sum_probs=86.0

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+.+.|++++|...|+.......   .+...|..+..+|...|++++|...|++..... +-+...|..+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~l   95 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH---YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHA   95 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHH
Confidence            455677788899999999999999999988763   267788999999999999999999999998753 3367888889


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCC
Q 013010          211 INALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      ..+|...|++++|...|+...+..
T Consensus        96 g~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           96 AECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC
Confidence            999999999999999999987654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.06  E-value=6.6e-05  Score=56.35  Aligned_cols=100  Identities=13%  Similarity=0.039  Sum_probs=85.4

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC--CHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP--DVYAYN  208 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~  208 (451)
                      +...+..+...+...|++++|...+++..+....   +...+..+...+...|++++|...|++..+.. +.  +...+.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~   80 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE---ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWA   80 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHH
Confidence            4556777888999999999999999999887532   56678889999999999999999999998853 23  578889


Q ss_pred             HHHHHHHhc-CChHHHHHHHHHhhhCC
Q 013010          209 VVINALCRV-GNFNKARFLLEQMELPG  234 (451)
Q Consensus       209 ~li~~~~~~-g~~~~a~~~~~~m~~~g  234 (451)
                      .+..++... |++++|.+.+++.....
T Consensus        81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           81 AKADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            999999999 99999999999998765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.05  E-value=3.5e-05  Score=62.08  Aligned_cols=99  Identities=12%  Similarity=-0.021  Sum_probs=85.9

Q ss_pred             cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          168 TTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       168 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      +...+..+...+...|++++|...|+...... +.+...|..+..+|...|++++|...|++.....   |.+...+..+
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---p~~~~~~~~l   95 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD---IXEPRFPFHA   95 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TTCTHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCchHHHHH
Confidence            56677888899999999999999999998753 3478889999999999999999999999998765   3467888999


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      ..+|...|           ++++|...|+...+.
T Consensus        96 g~~~~~~g-----------~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           96 AECLLQXG-----------ELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHHHTT-----------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence            99999999           899999999988764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.02  E-value=8.7e-05  Score=57.41  Aligned_cols=114  Identities=14%  Similarity=0.117  Sum_probs=87.3

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCC----hhhH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-VPT----SSSY  361 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~----~~~~  361 (451)
                      ...+..+...+...|++++|...|+...+.. +.+...+..+...|...|++++|...+++....... .++    ...+
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            3456777788889999999999999887763 336778888888999999999999999988775421 122    6678


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 013010          362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDAL  403 (451)
Q Consensus       362 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~  403 (451)
                      ..+...+...|++++|.+.|++..+..  |+......+..+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~  122 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence            888888999999999999999888743  5655555554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.02  E-value=0.00019  Score=55.55  Aligned_cols=97  Identities=11%  Similarity=0.003  Sum_probs=78.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA  367 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  367 (451)
                      ..+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..+++..+..  +.+...|..+..+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~   81 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHH
Confidence            456667777888899999999998887753 2367888888888889999999999999888876  4567788888888


Q ss_pred             HHHcCCHHHHHHHHHHHHhC
Q 013010          368 LCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       368 ~~~~g~~~~A~~l~~~m~~~  387 (451)
                      +...|++++|.+.|++..+.
T Consensus        82 ~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHh
Confidence            88899999999888887753

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.02  E-value=0.00011  Score=56.94  Aligned_cols=98  Identities=14%  Similarity=0.041  Sum_probs=82.9

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ...+..+...+.+.|++++|...|++..+....   +...|..+..+|.+.|++++|+..|++..+.. +-+...|..+.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg   79 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE---DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKA   79 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            456777888889999999999999999887632   56789999999999999999999999998853 33578888899


Q ss_pred             HHHHhcCChHHHHHHHHHhhhC
Q 013010          212 NALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      .++...|++++|...|++....
T Consensus        80 ~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           80 TAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.02  E-value=0.0002  Score=68.56  Aligned_cols=167  Identities=10%  Similarity=-0.049  Sum_probs=104.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHH----HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh--
Q 013010          207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVY----TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF--  280 (451)
Q Consensus       207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~----~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~--  280 (451)
                      +..+...|...|++++|.+++..+...--.+ ++..    +.+.+-..+...|           .++.|..++.....  
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~  125 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AKSKTVKVLKTLIEKFEQVPD-----------SLDDQIFVCEKSIEFA  125 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CHHHHHHHHHHHHHHHCSCCS-----------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cchHHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHHH
Confidence            5667777888888888888877765421110 1211    1222222223334           56666666665432  


Q ss_pred             --cCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          281 --KGFVPD-VVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       281 --~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                        .+..+. ..++..+...|...|++++|..++++....    +-.+ ...++..++..|...|++++|..++++.....
T Consensus       126 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          126 KREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence              222222 456777888888999999999988876542    1122 24677888888999999999999988766432


Q ss_pred             CCCCC-----hhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          353 HGVPT-----SSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       353 ~~~p~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      ...++     ...+..+...+...|++++|...|.+..
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            11121     2345556666677788888888776664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.02  E-value=0.00036  Score=52.63  Aligned_cols=99  Identities=21%  Similarity=0.120  Sum_probs=82.8

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010          287 VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH  366 (451)
Q Consensus       287 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  366 (451)
                      ...+..+...+...|++++|...++...... +.+...+..+...|...|++++|...+++..+..  +.+...+..+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~   80 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHH
Confidence            4566777888889999999999999987753 2367888888889999999999999999988875  456778888889


Q ss_pred             HHHHcCCHHHHHHHHHHHHhCC
Q 013010          367 ALCEAGRVLEARDFLAELVDGG  388 (451)
Q Consensus       367 ~~~~~g~~~~A~~l~~~m~~~g  388 (451)
                      .+...|++++|.+.+++..+.+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHcC
Confidence            9999999999999999888653

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.01  E-value=8.5e-05  Score=58.01  Aligned_cols=106  Identities=12%  Similarity=0.000  Sum_probs=83.5

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCC----HHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR--CRPD----VYA  206 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~  206 (451)
                      ..+..+...+.+.|++++|...|++..+...   .+...|+.+..+|...|++++|++.|++..+.+  ..++    ..+
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p---~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~   85 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDP---SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA   85 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence            4567788899999999999999999988753   266789999999999999999999999887632  1111    246


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH
Q 013010          207 YNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT  245 (451)
Q Consensus       207 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~  245 (451)
                      |..+..++...|++++|.+.|++.....    ||..+..
T Consensus        86 ~~~lg~~~~~~~~~~~A~~~~~kal~~~----~~~~~~~  120 (127)
T 4gcn_A           86 MSRAGNAFQKQNDLSLAVQWFHRSLSEF----RDPELVK  120 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC----cCHHHHH
Confidence            7778888899999999999999877643    6655443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.00  E-value=5.7e-05  Score=73.52  Aligned_cols=129  Identities=9%  Similarity=-0.040  Sum_probs=99.0

Q ss_pred             HHHccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHHHHH
Q 013010          141 VFARGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----R-CRP-DVYAYN  208 (451)
Q Consensus       141 ~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~  208 (451)
                      .+...|++++|..++++..+.     |...+....+++.|...|...|++++|..++++..+.     | -.| ...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            356789999999999887654     3233345788999999999999999999999887652     2 122 357789


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010          209 VVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF  280 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~  280 (451)
                      .|...|...|++++|+.++++...     .|-.+|-...+.+.+-.++...+           .+++|+.+|..+.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~-----------~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELR-----------MFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            999999999999999999988743     45443334455666667777777           88999999988875

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.00  E-value=1.5e-05  Score=67.60  Aligned_cols=97  Identities=11%  Similarity=-0.029  Sum_probs=62.9

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA  367 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  367 (451)
                      ..+..+..+|...|++++|...++...+.. +.+...+..+-.+|...|++++|...|++..+..  +-+...+..+...
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~  165 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLDIRNSYELC  165 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence            566667777888888888888888877652 2356777778888888888888888888877765  3455666666666


Q ss_pred             HHHcCCHHHHH-HHHHHHHhC
Q 013010          368 LCEAGRVLEAR-DFLAELVDG  387 (451)
Q Consensus       368 ~~~~g~~~~A~-~l~~~m~~~  387 (451)
                      +...++.+++. ..+..|...
T Consensus       166 ~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          166 VNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             HHHHHHHHC------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            66666666655 445555433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.99  E-value=0.00012  Score=56.69  Aligned_cols=113  Identities=12%  Similarity=0.055  Sum_probs=90.1

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--CCC----HH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRC--RPD----VY  205 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~  205 (451)
                      ...+..+...+...|++++|...++.......   .+...+..+...+...|++++|...|++..+...  .++    ..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   80 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHH
Confidence            35677788889999999999999999988752   2566788899999999999999999999877431  122    77


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      +|..+..++...|++++|.+.|++..+..    |+......+....
T Consensus        81 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~l~~~~  122 (131)
T 1elr_A           81 AYARIGNSYFKEEKYKDAIHFYNKSLAEH----RTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC----CCHHHHHHHHHHH
Confidence            88888999999999999999999988764    6665555554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.98  E-value=9.7e-05  Score=55.37  Aligned_cols=100  Identities=11%  Similarity=-0.007  Sum_probs=75.8

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--ChhhHHH
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVP--TSSSYTP  363 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p--~~~~~~~  363 (451)
                      +...+..+...+...|++++|...++...+.. +.+...+..+...|...|++++|...+++..+..  +.  +...+..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~   81 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAA   81 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHH
Confidence            34556667777888888888888888877653 2356777778888888888888888888887765  33  5677788


Q ss_pred             HHHHHHHc-CCHHHHHHHHHHHHhCC
Q 013010          364 IIHALCEA-GRVLEARDFLAELVDGG  388 (451)
Q Consensus       364 li~~~~~~-g~~~~A~~l~~~m~~~g  388 (451)
                      +...+... |++++|.+.+.+..+..
T Consensus        82 l~~~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           82 KADALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence            88888888 88888888888877653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.98  E-value=0.00016  Score=59.12  Aligned_cols=100  Identities=9%  Similarity=-0.047  Sum_probs=87.1

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHH
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVV  210 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  210 (451)
                      +...+..+...+.+.|++++|...|++..+....   +...|..+..+|...|++++|+..|++..+.. +-+...|..+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l   85 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA---NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4567888889999999999999999999987632   67789999999999999999999999998854 3358889999


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCC
Q 013010          211 INALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      ..+|...|++++|...|++..+..
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhC
Confidence            999999999999999999987764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.96  E-value=0.00018  Score=56.40  Aligned_cols=101  Identities=14%  Similarity=-0.033  Sum_probs=87.2

Q ss_pred             CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010          129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN  208 (451)
Q Consensus       129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  208 (451)
                      +.+...+..+...+...|++++|...|.........   +...|..+..++...|++++|...|++..+.. +.+...|.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~   81 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL---VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHF   81 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC---cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHH
Confidence            346778888999999999999999999999887632   56789999999999999999999999998854 33678899


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhC
Q 013010          209 VVINALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      .+..+|...|++++|...|++....
T Consensus        82 ~l~~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           82 FLGQCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999988754

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.95  E-value=8.7e-05  Score=59.12  Aligned_cols=99  Identities=8%  Similarity=-0.026  Sum_probs=84.2

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ...+..+...+.+.|++++|...|+.....+.   .+...|..+..+|...|++++|...|+...+.. +-+...|..+.
T Consensus        18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg   93 (142)
T 2xcb_A           18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHH
Confidence            44566677888999999999999999998763   266788899999999999999999999998854 34677888889


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCC
Q 013010          212 NALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      .+|...|++++|.+.|+......
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999999987654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.95  E-value=0.00044  Score=54.77  Aligned_cols=98  Identities=16%  Similarity=-0.044  Sum_probs=83.5

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPN----RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY  361 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~  361 (451)
                      +...+..+...+...|++++|.+.|++..+.  .|+    ...+..+...|...|++++|...+++..+..  +.+...+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~  102 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD--GGDVKAL  102 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--SCCHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--ccCHHHH
Confidence            5667788888889999999999999998876  465    6778888888999999999999999988865  4567788


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          362 TPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       362 ~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      ..+..+|...|++++|.+.|++..+.
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            88888999999999999999988864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.95  E-value=0.00027  Score=55.43  Aligned_cols=99  Identities=12%  Similarity=0.018  Sum_probs=81.2

Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      .+...+..+...+...|++++|...|+...+.. +.+...|..+...|...|++++|...+++..+..  +.+...+..+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l   83 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL   83 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--chhHHHHHHH
Confidence            356777888888889999999999999877763 2357788888888889999999999999888876  4567788888


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Q 013010          365 IHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       365 i~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ...|...|++++|...|.+..+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           84 GQCQLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH
Confidence            8889999999999998888774

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.94  E-value=0.0002  Score=56.86  Aligned_cols=116  Identities=11%  Similarity=-0.047  Sum_probs=91.1

Q ss_pred             CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010          129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN  208 (451)
Q Consensus       129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  208 (451)
                      +.+...+..+...+...|++++|...|++..+...........|..+..+|...|++++|...+++..+.. +.+...|.
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            34567788889999999999999999999988753211116778889999999999999999999988753 33678888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      .+..+|...|++++|...|++.....   +.+...+..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~  140 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLE---PKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC---SSCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC---CCcHHHHHHHH
Confidence            89999999999999999999988764   23444444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.94  E-value=0.00019  Score=57.11  Aligned_cols=97  Identities=6%  Similarity=-0.077  Sum_probs=76.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHA  367 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~  367 (451)
                      ..+..+...+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|++.....  +.+...+..+..+
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~   95 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHH
Confidence            445556677788899999999998887653 2267778888888888999999999999888876  4566777788888


Q ss_pred             HHHcCCHHHHHHHHHHHHhC
Q 013010          368 LCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       368 ~~~~g~~~~A~~l~~~m~~~  387 (451)
                      |...|++++|.+.|+...+.
T Consensus        96 ~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh
Confidence            88999999999988887753

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.91  E-value=0.00022  Score=60.32  Aligned_cols=119  Identities=14%  Similarity=-0.007  Sum_probs=95.7

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC--cc-----------HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL--VT-----------TSSVTCLIKVLGEEGLVNEALATFYRMKQFR  199 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  199 (451)
                      ..+..+...+.+.|++++|...|++..+......  ..           ...|..+..+|...|++++|+..++...+..
T Consensus        39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            4566678888899999999999999988642211  00           2678889999999999999999999998853


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       200 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                       +.+...|..+..+|...|++++|...|++.....   |-+..++..+..++...+
T Consensus       119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---PNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHHHHHHH
T ss_pred             -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHHHHH
Confidence             3467889999999999999999999999988764   346777777777777766

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.90  E-value=0.0005  Score=56.06  Aligned_cols=99  Identities=11%  Similarity=0.089  Sum_probs=85.5

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010          286 DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII  365 (451)
Q Consensus       286 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  365 (451)
                      +...+..+...+...|++++|.+.|++..+.. +-+...|..+-.+|...|++++|+..|++..+..  +-+...|..+.
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg   86 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence            45567778888999999999999999988763 2268888999999999999999999999999876  55688899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhC
Q 013010          366 HALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       366 ~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      .+|...|++++|.+.|++.++.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999988864

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.89  E-value=7.4e-05  Score=72.75  Aligned_cols=134  Identities=8%  Similarity=-0.066  Sum_probs=94.0

Q ss_pred             HHHhcCCHHHHHHHHHHHhhC---CCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHHHH
Q 013010          178 VLGEEGLVNEALATFYRMKQF---RCRP----DVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTYT  245 (451)
Q Consensus       178 ~~~~~g~~~~A~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~~~  245 (451)
                      .+...|++++|+.++++..+.   -+.|    ...+++.|..+|...|++++|+.++++...     .|-.+|-...+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            456789999999999887652   1122    357799999999999999999999988743     3544444567899


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNK  315 (451)
Q Consensus       246 ~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  315 (451)
                      .|...|...|+++.|..    -+++|++++........+-...+.+.+-.++...+.+++|+.+|..+++
T Consensus       398 nLa~~~~~~G~~~eA~~----~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHG----MICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHH----HHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHH----HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999994444443    3344444444433322222334556666777788888999999988875

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.88  E-value=0.00035  Score=54.11  Aligned_cols=98  Identities=10%  Similarity=-0.037  Sum_probs=77.1

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----HHHHHHH
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD----VYAYNVV  210 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l  210 (451)
                      +..+...+.+.|++++|...|+...+...........+..+..++...|++++|...|++..+..  |+    ...+..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l   82 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence            33466677889999999999999888754322223567788888999999999999999988743  33    5667888


Q ss_pred             HHHHHhcCChHHHHHHHHHhhhCC
Q 013010          211 INALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       211 i~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      ..++...|++++|...|+++....
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC
Confidence            888999999999999999988764

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.86  E-value=0.00091  Score=63.92  Aligned_cols=199  Identities=7%  Similarity=-0.096  Sum_probs=121.9

Q ss_pred             HHHHccCChhHHHHHHHHHHHcCCCCCc--------------cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCCH
Q 013010          140 IVFARGNNVKGLWDFLKDMSRRGNGELV--------------TTSSVTCLIKVLGEEGLVNEALATFYRMKQFR-CRPDV  204 (451)
Q Consensus       140 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~  204 (451)
                      ..+.+.|++++|.+.+..+.+.......              ....+..+...|.+.|++++|.+.+..+...- -.++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            3345667888888888777765322110              01236677888888888888888887775521 11111


Q ss_pred             ----HHHHHHHHHHHhcCChHHHHHHHHHhhh----CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHH
Q 013010          205 ----YAYNVVINALCRVGNFNKARFLLEQMEL----PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFR  276 (451)
Q Consensus       205 ----~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~  276 (451)
                          .+.+.+-..+...|+.+.|..++.+...    .+.. ..-..++..+...|...|           ++++|..+++
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~la~~~~~~g-----------~~~~A~~~l~  159 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRV-FLKHSLSIKLATLHYQKK-----------QYKDSLALIN  159 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCC-SSHHHHHHHHHHHHHHHT-----------CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHHHcc-----------ChHHHHHHHH
Confidence                1222222333445778888887766543    2221 123456777888888888           7777777777


Q ss_pred             HHHhc--CC--CC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 013010          277 LMLFK--GF--VP-DVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIPN--RVTYNSFIRYYSVVNEIDKAIEMM  345 (451)
Q Consensus       277 ~m~~~--~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~t~~~li~~~~~~g~~~~A~~~~  345 (451)
                      +....  +.  .+ ...++..++..|...|++++|..+++.....    +..|.  ...+..+...+...|++++|...|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~  239 (434)
T 4b4t_Q          160 DLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYF  239 (434)
T ss_dssp             HHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            66532  11  11 2356777888888888888888888776532    22221  345566666677788888888777


Q ss_pred             HHHHh
Q 013010          346 RKMQN  350 (451)
Q Consensus       346 ~~m~~  350 (451)
                      .+..+
T Consensus       240 ~~a~~  244 (434)
T 4b4t_Q          240 FESFE  244 (434)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.86  E-value=0.00031  Score=54.73  Aligned_cols=107  Identities=15%  Similarity=0.107  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC-
Q 013010          204 VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG-  282 (451)
Q Consensus       204 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~-  282 (451)
                      ..++..+...+.+.|++++|+..|++..+..   |-+...|+.+..+|.+.|           ++++|.+.+++..+.. 
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~---p~~~~~~~nlg~~~~~~~-----------~~~~A~~~~~~al~~~~   73 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD---PSNITFYNNKAAVYFEEK-----------KFAECVQFCEKAVEVGR   73 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHhHHHHHHHhh-----------hHHHHHHHHHHHHHhCc
Confidence            3456667777777888888888887777654   346677777888888888           6777777776665421 


Q ss_pred             -CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 013010          283 -FVPD----VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYN  326 (451)
Q Consensus       283 -~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~  326 (451)
                       ..++    ..+|..+-.++...|++++|.+.|++..+.  .||..+..
T Consensus        74 ~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~  120 (127)
T 4gcn_A           74 ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK  120 (127)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred             ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence             0111    134555666777778888888888776654  35554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.83  E-value=0.014  Score=53.40  Aligned_cols=193  Identities=9%  Similarity=-0.015  Sum_probs=130.5

Q ss_pred             HHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCC----------hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010          113 NKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNN----------VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE  181 (451)
Q Consensus       113 ~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~  181 (451)
                      ++|++.++.+..   ..|+ ...|+.=-..+...+.          ++++..+++.+...+.+   +..+|+.-...+..
T Consensus        47 ~eaL~~t~~~L~---~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK---ny~aW~hR~wlL~~  120 (331)
T 3dss_A           47 ESVLELTSQILG---ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRCWLLSR  120 (331)
T ss_dssp             HHHHHHHHHHHT---TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHhc
Confidence            689999999884   3444 3445544333333332          68899999999988644   67788888878888


Q ss_pred             cC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010          182 EG--LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT  258 (451)
Q Consensus       182 ~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~  258 (451)
                      .|  .+++++++++.+.+.. +-|-.+|+--.-.+...|. ++++++.++++.+...   -|..+|+.....+.+.+...
T Consensus       121 l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p---~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          121 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHHSCCC
T ss_pred             cCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHhhhcc
Confidence            77  4899999999999865 4588888888877888888 5899999999998764   58888887777666653211


Q ss_pred             hh---hHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHhC
Q 013010          259 GC---RKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKT-----------YRIERALELFDDMNKK  316 (451)
Q Consensus       259 ~~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~  316 (451)
                      ..   .....+.++++++.+....... +-|...|+-+-..+.+.           +.++++.+.++++.+.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~  267 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL  267 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence            00   0000126788888888877642 34666666554444444           2345555555555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.83  E-value=0.00018  Score=55.62  Aligned_cols=97  Identities=12%  Similarity=0.018  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA  213 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  213 (451)
                      .+..+...+.+.|++++|...++...+....   +...|..+..++...|++++|+..|++..+.. +-+...+..+..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~   94 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   94 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3455677788899999999999999887532   66778888899999999999999999988753 2357788888889


Q ss_pred             HHhcCChHHHHHHHHHhhhCC
Q 013010          214 LCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       214 ~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      |...|++++|...|++..+..
T Consensus        95 ~~~~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           95 HTNEHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHcCCHHHHHHHHHHHHHhC
Confidence            999999999999999887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.82  E-value=0.00022  Score=57.33  Aligned_cols=133  Identities=16%  Similarity=0.103  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010          242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFV-PD----VVAYNCLIDGCCKTYRIERALELFDDMNKK  316 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  316 (451)
                      .++..+...|...|           ++++|...+++..+..-. .+    ..++..+...+...|++++|.+.+++..+.
T Consensus        10 ~~~~~l~~~~~~~~-----------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   78 (164)
T 3ro3_A           10 RAFGNLGNTHYLLG-----------NFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLL   78 (164)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45677777777888           666666666655432100 11    245667777778888888888888775542


Q ss_pred             ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----CChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          317 ----GCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGV----PTSSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       317 ----g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~----p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                          +-.+ ...++..+...|...|++++|.+.+++..+.....    .....+..+...+...|++++|.+.+++..
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           79 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence                1111 13456666677777888888888777665432101    113355666667777777777777776655

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.81  E-value=4.5e-05  Score=58.50  Aligned_cols=88  Identities=10%  Similarity=-0.071  Sum_probs=53.5

Q ss_pred             cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 013010          145 GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKAR  224 (451)
Q Consensus       145 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  224 (451)
                      .|++++|...|++..+.+...+.+...+..+..+|...|++++|...|++..+.. +-+..++..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            4666677777776666532222345566666677777777777777777776643 224566666666777777777777


Q ss_pred             HHHHHhhhC
Q 013010          225 FLLEQMELP  233 (451)
Q Consensus       225 ~~~~~m~~~  233 (451)
                      ..|++....
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777766554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.81  E-value=0.00016  Score=58.14  Aligned_cols=135  Identities=14%  Similarity=-0.021  Sum_probs=80.9

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC----HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCC---CCC
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PD----VYAYNVVINALCRVGNFNKARFLLEQMELPGFRC---PPD  240 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~p~  240 (451)
                      ..++..+...+...|++++|...+++..+..-. ++    ..++..+...+...|++++|...+++........   +..
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            345666777777777777777777776542100 11    2467777778888888888888887765431100   012


Q ss_pred             HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 013010          241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK----GFVP-DVVAYNCLIDGCCKTYRIERALELFDDMN  314 (451)
Q Consensus       241 ~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  314 (451)
                      ..++..+...+...|           ++++|...+++..+.    +..+ ...++..+...+...|++++|.+.+++..
T Consensus        89 ~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  156 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQ-----------DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  156 (164)
T ss_dssp             HHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            456677777788888           666666666655432    1111 12345555566666666666666666544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.68  E-value=0.0011  Score=51.15  Aligned_cols=92  Identities=14%  Similarity=0.083  Sum_probs=71.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC---hhhHHHH
Q 013010          292 CLIDGCCKTYRIERALELFDDMNKKGCIPN-R---VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT---SSSYTPI  364 (451)
Q Consensus       292 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~---~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~---~~~~~~l  364 (451)
                      .+...+...|++++|...|+...+..  |+ .   ..+..+..+|...|++++|...|++..+..  +.+   ...+..+
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~l   82 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHH
Confidence            35566778899999999999887752  32 2   467777888888999999999999888765  223   4567777


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhC
Q 013010          365 IHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       365 i~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      ..++...|++++|...|++..+.
T Consensus        83 a~~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888899999999999888864

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.68  E-value=0.00019  Score=69.93  Aligned_cols=124  Identities=10%  Similarity=-0.034  Sum_probs=96.9

Q ss_pred             cccCCCchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH
Q 013010           99 PAAYRDPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV  178 (451)
Q Consensus        99 ~~~~~~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~  178 (451)
                      +...+..+...+++++|++.|+...+.  .+.+...|..+..+|.+.|++++|.+.+++..+...   .+..+|..+..+
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p---~~~~~~~~lg~~   83 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK---KYIKGYYRRAAS   83 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CCHHHHHHHHHH
Confidence            445566677788999999999999864  344678899999999999999999999999998853   367789999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 013010          179 LGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINA--LCRVGNFNKARFLLE  228 (451)
Q Consensus       179 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  228 (451)
                      |...|++++|.+.|++..+.. +-+...+..+..+  +.+.|++++|.+.++
T Consensus        84 ~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           84 NMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999999999998753 1234455555555  888899999999998

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.68  E-value=0.00049  Score=53.06  Aligned_cols=96  Identities=15%  Similarity=-0.030  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          171 SVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       171 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      .+..+...+.+.|++++|...|++..+.. +-+...|..+..++...|++++|+..|++..+..   |-+...+..+..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---P~~~~~~~~la~~   94 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---PKDIAVHAALAVS   94 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHH
Confidence            45667778889999999999999998853 3378888999999999999999999999998875   3477889999999


Q ss_pred             HHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          251 YCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       251 ~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      |.+.|           ++++|...+++..+.
T Consensus        95 ~~~~g-----------~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           95 HTNEH-----------NANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHH-----------HHHHHHHHHHHHHC-
T ss_pred             HHHcC-----------CHHHHHHHHHHHHHh
Confidence            99999           999999999988754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.62  E-value=0.00013  Score=55.93  Aligned_cols=86  Identities=12%  Similarity=0.068  Sum_probs=51.6

Q ss_pred             cCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHH
Q 013010          300 TYRIERALELFDDMNKKGC--IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEA  377 (451)
Q Consensus       300 ~g~~~~a~~~~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A  377 (451)
                      .|++++|...|++..+.+.  +-+...+..+-..|...|++++|...|++..+..  +-+...+..+..++...|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHH
Confidence            4566666666666665431  1134556666666667777777777777766654  34455666666667777777777


Q ss_pred             HHHHHHHHhC
Q 013010          378 RDFLAELVDG  387 (451)
Q Consensus       378 ~~l~~~m~~~  387 (451)
                      .+.+++.++.
T Consensus        81 ~~~~~~al~~   90 (117)
T 3k9i_A           81 VELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            7777666543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.59  E-value=0.0012  Score=61.90  Aligned_cols=118  Identities=14%  Similarity=0.009  Sum_probs=95.7

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcC--------------CCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRG--------------NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF  198 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~--------------~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  198 (451)
                      ..+..+...+.+.|++++|.+.|++..+..              .. +.+..+|..+..+|.+.|++++|++.+++..+.
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            357778888999999999999999887610              01 235678899999999999999999999999985


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       199 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      . +-+...|..+..+|...|++++|...|++..+..   +.+...+..+...+...+
T Consensus       303 ~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~---P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          303 D-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHH
T ss_pred             C-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHH
Confidence            4 3367889999999999999999999999988765   246667777777777666

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.58  E-value=0.001  Score=54.04  Aligned_cols=102  Identities=14%  Similarity=-0.000  Sum_probs=82.9

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHc--------CCC-------CCccHHhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRR--------GNG-------ELVTTSSVTCLIKVLGEEGLVNEALATFYRMK  196 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~--------~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  196 (451)
                      ...+......+.+.|++++|...|......        ...       .+.+...|..+..+|.+.|++++|+..++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345677888888999999999999887765        100       11245678889999999999999999999998


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010          197 QFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       197 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      +.. +.+...|..+..+|...|++++|...|++.....
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            854 3468889999999999999999999999988765

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.58  E-value=0.0011  Score=64.30  Aligned_cols=131  Identities=15%  Similarity=0.043  Sum_probs=101.9

Q ss_pred             CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC----------------HhhHHHHHHHHHhcCCH
Q 013010          240 DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD----------------VVAYNCLIDGCCKTYRI  303 (451)
Q Consensus       240 ~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~li~~~~~~g~~  303 (451)
                      ....|..+...|.+.|           ++++|...|++..+.  .|+                ...|..+..+|.+.|++
T Consensus       267 ~a~~~~~~G~~~~~~g-----------~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~  333 (457)
T 1kt0_A          267 QAAIVKEKGTVYFKGG-----------KYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY  333 (457)
T ss_dssp             HHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhCC-----------CHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence            4567888889999999           888999999888764  222                47788888999999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHH-HHH
Q 013010          304 ERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARD-FLA  382 (451)
Q Consensus       304 ~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~-l~~  382 (451)
                      ++|...++...+.. +-+...|..+-.+|...|++++|+..|++..+..  +-+...+..+...+.+.++.++|.+ ++.
T Consensus       334 ~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~l~~~~~~~~~~~~a~~~~~~  410 (457)
T 1kt0_A          334 TKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--PQNKAARLQISMCQKKAKEHNERDRRIYA  410 (457)
T ss_dssp             HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988763 2367888889999999999999999999998865  4566788888888888888887764 455


Q ss_pred             HHHh
Q 013010          383 ELVD  386 (451)
Q Consensus       383 ~m~~  386 (451)
                      .|..
T Consensus       411 ~~f~  414 (457)
T 1kt0_A          411 NMFK  414 (457)
T ss_dssp             HC--
T ss_pred             HHHh
Confidence            5543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.58  E-value=0.0012  Score=63.99  Aligned_cols=120  Identities=12%  Similarity=-0.023  Sum_probs=97.6

Q ss_pred             HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 013010          132 EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL------------VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFR  199 (451)
Q Consensus       132 ~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  199 (451)
                      ...|..+...+.+.|++++|...|++..+......            .....|..+..+|.+.|++++|+..|++..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45677888999999999999999999888642210            005788999999999999999999999998854


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          200 CRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       200 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                       +.+...|..+..+|...|++++|...|++..+..   |-+..++..+..++.+.+
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~---P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHHH
Confidence             3468889999999999999999999999998875   346667888888888877

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.58  E-value=0.00024  Score=69.25  Aligned_cols=123  Identities=11%  Similarity=-0.068  Sum_probs=95.0

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013010          136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC  215 (451)
Q Consensus       136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  215 (451)
                      ..+...+.+.|++++|.+.+++..+...   .+..+|..+..+|.+.|++++|++.|++..+.. +-+..+|..+..+|.
T Consensus        10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~   85 (477)
T 1wao_1           10 KTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   85 (477)
T ss_dssp             SSSSSSTTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3344556788999999999999988753   267789999999999999999999999999864 346788999999999


Q ss_pred             hcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH--HHhcCCchhhhHHHHHHHHHHHHHHH
Q 013010          216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS--YCKYGMQTGCRKAIRRRIWEANHLFR  276 (451)
Q Consensus       216 ~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~--~~~~g~~~~~~~~~~~~~~~a~~~~~  276 (451)
                      ..|++++|.+.|++..+..-   .+...+..+..+  +.+.|           ++++|.+.++
T Consensus        86 ~~g~~~eA~~~~~~al~~~p---~~~~~~~~l~~~~~~~~~g-----------~~~~A~~~~~  134 (477)
T 1wao_1           86 ALGKFRAALRDYETVVKVKP---HDKDAKMKYQECNKIVKQK-----------AFERAIAGDE  134 (477)
T ss_dssp             HHTCHHHHHHHHHHHHHHST---TCTTHHHHHHHHHHHHHHH-----------HHCCC-----
T ss_pred             HcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHH-----------HHHHHhcccc
Confidence            99999999999999887642   233445555444  77777           8888888877

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.53  E-value=0.05  Score=49.66  Aligned_cols=171  Identities=8%  Similarity=0.007  Sum_probs=109.4

Q ss_pred             HccCChh-HHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC----------HHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          143 ARGNNVK-GLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL----------VNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       143 ~~~g~~~-~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      .+.|.+. +|+++++.+...+..   +..+|+.--..+...+.          +++++.+++.+.... +-+..+|+.-.
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~---~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~  115 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC  115 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTT---CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch---hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            3455554 789999999888633   44456654333333222          678888888887743 34778888777


Q ss_pred             HHHHhcC--ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHH-HHHHHHHHHHHHhcCCCCCHh
Q 013010          212 NALCRVG--NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRR-IWEANHLFRLMLFKGFVPDVV  288 (451)
Q Consensus       212 ~~~~~~g--~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~  288 (451)
                      ..+...+  .+++++.+++.+.+..   +-|..+|+--.-.+...|           . ++++++.++.+.+.. +-|..
T Consensus       116 wlL~~l~~~~~~~EL~~~~k~l~~d---prNy~AW~~R~~vl~~l~-----------~~~~eel~~~~~~I~~~-p~N~S  180 (331)
T 3dss_A          116 WLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAA-----------VAPAEELAFTDSLITRN-FSNYS  180 (331)
T ss_dssp             HHHHHCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT-----------CCHHHHHHHHHHHHHHC-SCCHH
T ss_pred             HHHhccCcccHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhC-----------cCHHHHHHHHHHHHHHC-CCCHH
Confidence            7777777  4788888888888775   347778877777777776           4 577888888887754 34666


Q ss_pred             hHHHHHHHHHhc--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 013010          289 AYNCLIDGCCKT--------------YRIERALELFDDMNKKGCIPNRVTYNSFIRYYS  333 (451)
Q Consensus       289 ~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~  333 (451)
                      .|+.....+.+.              +.++++++.+....... +-|...|+-+-..+.
T Consensus       181 AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~  238 (331)
T 3dss_A          181 SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLG  238 (331)
T ss_dssp             HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            666655555544              33566666666655542 114555554433333

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.53  E-value=0.0014  Score=53.09  Aligned_cols=102  Identities=15%  Similarity=0.090  Sum_probs=81.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CC---------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKK-------GC---------IP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~---------~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      ..+...-..+.+.|++++|...|....+.       +-         .| +...|..+..+|.+.|++++|+..+++..+
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            44566677888999999999999887654       00         12 346788888899999999999999999988


Q ss_pred             cCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 013010          351 LNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE  393 (451)
Q Consensus       351 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  393 (451)
                      ..  +.+...|..+..+|...|++++|...|++.++.  .|+.
T Consensus        92 ~~--p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~  130 (162)
T 3rkv_A           92 RE--ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAA  130 (162)
T ss_dssp             HS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGG
T ss_pred             cC--CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCC
Confidence            76  567888999999999999999999999988874  3553

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.46  E-value=0.0044  Score=48.87  Aligned_cols=113  Identities=15%  Similarity=0.137  Sum_probs=94.6

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh----cCC
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE----EGL  184 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~----~g~  184 (451)
                      ..+.++|++.|+...+. | .+  ..+  |...|...+.+++|.+.|++..+.|     +...+..|-..|..    .++
T Consensus         8 ~~d~~~A~~~~~~aa~~-g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g-----~~~a~~~Lg~~y~~G~g~~~d   76 (138)
T 1klx_A            8 KKDLKKAIQYYVKACEL-N-EM--FGC--LSLVSNSQINKQKLFQYLSKACELN-----SGNGCRFLGDFYENGKYVKKD   76 (138)
T ss_dssp             HHHHHHHHHHHHHHHHT-T-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHCSSSCCC
T ss_pred             ccCHHHHHHHHHHHHcC-C-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCC-----CHHHHHHHHHHHHcCCCCCcc
Confidence            45688999999998865 4 22  233  7777878889999999999999886     56678888888888    899


Q ss_pred             HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCC
Q 013010          185 VNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGF  235 (451)
Q Consensus       185 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~  235 (451)
                      .++|.++|++..+.|   +...+..|-..|..    .++.++|.++|++..+.|.
T Consensus        77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999999999865   67888888888888    8999999999999998873

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.41  E-value=0.0099  Score=46.78  Aligned_cols=112  Identities=10%  Similarity=-0.002  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 013010          266 RRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV----VNEIDKA  341 (451)
Q Consensus       266 ~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A  341 (451)
                      +++++|.+.|++..+.| .++  ..  +-..|...+..++|.+.|+...+.|   +...+..|-..|..    .++.++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            48889999999988877 233  23  5566666777888999999888875   66777777777877    7899999


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 013010          342 IEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGGS  389 (451)
Q Consensus       342 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~  389 (451)
                      .+.|++..+.+.    ...+..|-..|..    .++.++|.++|++..+.|.
T Consensus        81 ~~~~~~Aa~~g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACGLND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999999888653    5667777777877    7889999999988888764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.40  E-value=0.0026  Score=59.69  Aligned_cols=123  Identities=9%  Similarity=-0.021  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc--------------CC-CCCHhhHHHHHHHHHhcCCHHHH
Q 013010          242 YTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK--------------GF-VPDVVAYNCLIDGCCKTYRIERA  306 (451)
Q Consensus       242 ~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~--------------~~-~~~~~~~~~li~~~~~~g~~~~a  306 (451)
                      ..+..+...+.+.|           ++++|...|++..+.              .. +.+..+|..+..+|.+.|++++|
T Consensus       224 ~~~~~~g~~~~~~g-----------~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A  292 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQ-----------NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGA  292 (370)
T ss_dssp             HHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhc-----------CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence            45677788889999           666676666665541              01 11345566666666677777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHH
Q 013010          307 LELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEAR  378 (451)
Q Consensus       307 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~  378 (451)
                      .+.+++..+.. +-+...|..+-.+|...|++++|+..|++..+..  +-+...+..+...+...++.+++.
T Consensus       293 ~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          293 VDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            77777666542 1245666666666677777777777777666654  234445555555555555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.36  E-value=0.0071  Score=48.64  Aligned_cols=106  Identities=14%  Similarity=0.064  Sum_probs=76.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 013010          290 YNCLIDGCCKTYRIERALELFDDMNKKGCI-P-----NR-----VTYNSFIRYYSVVNEIDKAIEMMRKMQNL-------  351 (451)
Q Consensus       290 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-----~~-----~t~~~li~~~~~~g~~~~A~~~~~~m~~~-------  351 (451)
                      +...-..+.+.|++++|...|+...+..-. |     +.     ..|..+-.++.+.|++++|+..+++..+.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            444556677889999999999887764211 0     22     37888888888999999999999888876       


Q ss_pred             CCCCCChhhH----HHHHHHHHHcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 013010          352 NHGVPTSSSY----TPIIHALCEAGRVLEARDFLAELVD-----GGSVPREYTYK  397 (451)
Q Consensus       352 ~~~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~  397 (451)
                      .  +-+...|    ...-.++...|++++|+..|++.++     .|+.+......
T Consensus        94 ~--pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           94 N--QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             T--STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             C--CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            4  3455677    7788888889999999999888763     35555544333

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.29  E-value=0.00035  Score=52.38  Aligned_cols=93  Identities=10%  Similarity=-0.027  Sum_probs=63.0

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-------  203 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------  203 (451)
                      +...+..+...+.+.|++++|.+.+++..+....   +...|..+..++...|++++|++.|++..+.  .|+       
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~   77 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIR   77 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHH
Confidence            3456677777888888888888888888776522   5566777888888888888888888888764  344       


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHH
Q 013010          204 VYAYNVVINALCRVGNFNKARFLLE  228 (451)
Q Consensus       204 ~~~~~~li~~~~~~g~~~~a~~~~~  228 (451)
                      ...+..+..++...|+.+.|...++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           78 SKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHhHhhhHhHHH
Confidence            3445555555555555555544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.0025  Score=47.46  Aligned_cols=88  Identities=9%  Similarity=-0.068  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-------H
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-------E  393 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-------~  393 (451)
                      +...+..+-..+...|++++|.+.|++..+..  +.+...+..+..++...|++++|.+.+++.++..  |+       .
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~   78 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS   78 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence            34455566666667777777777777766654  3455666666667777777777777777766532  33       3


Q ss_pred             HHHHHHHHHHHhcCCCchH
Q 013010          394 YTYKLVCDALNAAEEPSLL  412 (451)
Q Consensus       394 ~t~~~li~~~~~~g~~~~a  412 (451)
                      ..+..+..++...|+.+.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           79 KLQYRLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHHHHHHHHHHHhHhhh
Confidence            3444455555555554443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.20  E-value=0.0042  Score=49.96  Aligned_cols=93  Identities=15%  Similarity=0.038  Sum_probs=65.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-------------HHHHHHHHHHHHhcCChHHHHHHHHHhhhC-----
Q 013010          172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPD-------------VYAYNVVINALCRVGNFNKARFLLEQMELP-----  233 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----  233 (451)
                      +......+.+.|++++|+..|++..+.  .|+             ...|+.+-.++.+.|++++|+..+++..+.     
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            344445555566666666666666552  222             237888888888888888888888887765     


Q ss_pred             --CCCCCCCHHHH----HHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010          234 --GFRCPPDVYTY----TILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF  280 (451)
Q Consensus       234 --g~~~~p~~~~~----~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~  280 (451)
                        .   |-+...|    ...-.++...|           ++++|+..|++..+
T Consensus        92 e~~---pd~~~A~~~~~~~rG~aL~~lg-----------r~eEAl~~y~kAle  130 (159)
T 2hr2_A           92 ELN---QDEGKLWISAVYSRALALDGLG-----------RGAEAMPEFKKVVE  130 (159)
T ss_dssp             CTT---STHHHHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHH
T ss_pred             cCC---CchHHHHHHHHHhHHHHHHHCC-----------CHHHHHHHHHHHHh
Confidence              4   2355677    88899999999           88899988887764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.19  E-value=0.0019  Score=59.79  Aligned_cols=132  Identities=10%  Similarity=-0.051  Sum_probs=80.6

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccH-----------------HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTT-----------------SSVTCLIKVLGEEGLVNEALATFYRM  195 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-----------------~~~~~li~~~~~~g~~~~A~~~~~~m  195 (451)
                      ..+..+...+.+.|++++|...|++.......   +.                 ..|..+..+|.+.|++++|+..|++.
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~---~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a  256 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGD---DFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV  256 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCH---HHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc---chhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44667788888999999999999998776421   11                 27888999999999999999999999


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHH
Q 013010          196 KQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLF  275 (451)
Q Consensus       196 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~  275 (451)
                      .+.. +.+...|..+..+|...|++++|...|++..+..   |-+...+..+........          +..+.+...|
T Consensus       257 l~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~---p~~~~a~~~L~~l~~~~~----------~~~~~a~~~~  322 (338)
T 2if4_A          257 LTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA---PDDKAIRRELRALAEQEK----------ALYQKQKEMY  322 (338)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence            8753 3468899999999999999999999999988664   224444444444322222          1556777777


Q ss_pred             HHHHhc
Q 013010          276 RLMLFK  281 (451)
Q Consensus       276 ~~m~~~  281 (451)
                      ..|...
T Consensus       323 ~~~l~~  328 (338)
T 2if4_A          323 KGIFKG  328 (338)
T ss_dssp             ------
T ss_pred             HHhhCC
Confidence            777643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.16  E-value=0.0048  Score=43.94  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=45.7

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      ...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...|++.....   |.+..++..+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---p~~~~~~~~l~   84 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD---PNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---CCCHHHHHHHH
Confidence            3455556666666666666666666665532 2245556666666666666666666666665543   22444555444


Q ss_pred             HHHH
Q 013010          249 SSYC  252 (451)
Q Consensus       249 ~~~~  252 (451)
                      ..+.
T Consensus        85 ~~~~   88 (91)
T 1na3_A           85 NAKQ   88 (91)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.13  E-value=0.061  Score=52.38  Aligned_cols=205  Identities=10%  Similarity=-0.009  Sum_probs=131.9

Q ss_pred             hHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 013010          149 KGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLE  228 (451)
Q Consensus       149 ~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~  228 (451)
                      +.+..+|++......   .+...|-..+..+.+.|+.++|..+|++....  +.+...|.    .|+...+.++.   ++
T Consensus       196 ~Rv~~~ye~al~~~p---~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~  263 (493)
T 2uy1_A          196 SRMHFIHNYILDSFY---YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGLVMDEEAV---YG  263 (493)
T ss_dssp             HHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHHHTTCTHH---HH
T ss_pred             HHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHhhcchhHH---HH
Confidence            446778888877642   24667888888888999999999999999986  33433333    23332222222   22


Q ss_pred             HhhhCC---------CC-CCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH--HHHHH
Q 013010          229 QMELPG---------FR-CPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN--CLIDG  296 (451)
Q Consensus       229 ~m~~~g---------~~-~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~li~~  296 (451)
                      .+.+.-         .. .......|...+..+.+.+           ..+.|..+|... ... ..+...|-  +.+..
T Consensus       264 ~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~-----------~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~  330 (493)
T 2uy1_A          264 DLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKR-----------GLELFRKLFIEL-GNE-GVGPHVFIYCAFIEY  330 (493)
T ss_dssp             HHHHHTC----------CHHHHHHHHHHHHHHHHHHH-----------CHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcC-----------CHHHHHHHHHHh-hCC-CCChHHHHHHHHHHH
Confidence            222110         00 0011244555666655555           788899999988 321 12333333  22222


Q ss_pred             HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHH
Q 013010          297 CCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLE  376 (451)
Q Consensus       297 ~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~  376 (451)
                      .+ .++.+.|..+|+...+.. +-+...+...+......|+.+.|..+|+...      -....|...+.-=...|+.+.
T Consensus       331 ~~-~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~------k~~~lw~~~~~fE~~~G~~~~  402 (493)
T 2uy1_A          331 YA-TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE------KTSRMWDSMIEYEFMVGSMEL  402 (493)
T ss_dssp             HH-HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC------CBHHHHHHHHHHHHHHSCHHH
T ss_pred             HH-CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHH
Confidence            22 346999999999987752 1134556677887888999999999999973      246778887777677899999


Q ss_pred             HHHHHHHHHh
Q 013010          377 ARDFLAELVD  386 (451)
Q Consensus       377 A~~l~~~m~~  386 (451)
                      +.+++++..+
T Consensus       403 ~r~v~~~~~~  412 (493)
T 2uy1_A          403 FRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887763

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.11  E-value=0.0015  Score=60.56  Aligned_cols=113  Identities=12%  Similarity=-0.014  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 013010          241 VYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP  320 (451)
Q Consensus       241 ~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  320 (451)
                      ...+..+...+.+.|           ++++|...|.+....  .|+...       +...++.+++...+.         
T Consensus       179 a~~~~~~g~~~~~~g-----------~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~---------  229 (338)
T 2if4_A          179 ADRRKMDGNSLFKEE-----------KLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK---------  229 (338)
T ss_dssp             HHHHHHHHHHTCSSS-----------CCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH---------
Confidence            345666777778888           777888888876654  233221       111222222221110         


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                       ...|..+-.+|.+.|++++|+..+++..+..  +.+...|..+..+|...|++++|...|++..
T Consensus       230 -~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al  291 (338)
T 2if4_A          230 -NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQ  291 (338)
T ss_dssp             -THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence             1244445555555555555555555555443  2344455555555555555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.07  E-value=0.037  Score=54.93  Aligned_cols=184  Identities=9%  Similarity=-0.054  Sum_probs=137.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCC----------hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNN----------VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE  181 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~  181 (451)
                      -++|++.++.+...  -+-+...|+.--.++...|+          ++++.++++.+.+.+.+   +..+|+.-...+.+
T Consensus        45 ~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK---~y~aW~hR~w~l~~  119 (567)
T 1dce_A           45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRCWLLSR  119 (567)
T ss_dssp             SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence            37889999998864  23345567766666666666          89999999999998744   77789988888889


Q ss_pred             cC--CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCch
Q 013010          182 EG--LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQT  258 (451)
Q Consensus       182 ~g--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~  258 (451)
                      .|  +++++++.++++.+.. +-+..+|+--..++.+.| .++++++.++++.+...   -|..+|+.....+.+.+...
T Consensus       120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p---~n~saW~~r~~ll~~l~~~~  195 (567)
T 1dce_A          120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF---SNYSSWHYRSCLLPQLHPQP  195 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC---CCHHHHHHHHHHHHHHSCCC
T ss_pred             cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC---CCccHHHHHHHHHHhhcccc
Confidence            99  7799999999999965 347889998888888888 89999999999998764   58888888888777643221


Q ss_pred             hhh---HHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH
Q 013010          259 GCR---KAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER  305 (451)
Q Consensus       259 ~~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  305 (451)
                      .+.   ....+.++++.+.+++..... +-|...|+-.-..+.+.++.++
T Consensus       196 ~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          196 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence            100   000127889999998887653 3466778877777777666433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.02  E-value=0.0055  Score=58.56  Aligned_cols=95  Identities=14%  Similarity=-0.014  Sum_probs=74.8

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHH
Q 013010          138 MGIVFARGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----R-CRP-DVY  205 (451)
Q Consensus       138 ll~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~  205 (451)
                      .+..+.+.|++++|..++++..+.     |...+....+++.|...|...|++++|+.++++..+.     | -.| ...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            345566789999999999998765     2222335678999999999999999999999988652     2 123 356


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010          206 AYNVVINALCRVGNFNKARFLLEQMEL  232 (451)
Q Consensus       206 ~~~~li~~~~~~g~~~~a~~~~~~m~~  232 (451)
                      +++.|...|...|++++|+.++++..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            789999999999999999999988743

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.99  E-value=0.0046  Score=46.67  Aligned_cols=78  Identities=19%  Similarity=0.087  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHh
Q 013010          151 LWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQM  230 (451)
Q Consensus       151 a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  230 (451)
                      |...++...+...   .+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++.
T Consensus         4 a~~~~~~al~~~p---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            4 ITERLEAMLAQGT---DNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             HHHHHHHHHTTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCC---CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4444444444331   134445555555555566666666555555432 123445555555555666666666665555


Q ss_pred             hh
Q 013010          231 EL  232 (451)
Q Consensus       231 ~~  232 (451)
                      ..
T Consensus        80 l~   81 (115)
T 2kat_A           80 LA   81 (115)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.95  E-value=0.0066  Score=45.75  Aligned_cols=78  Identities=17%  Similarity=0.169  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       306 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      |.+.|++..+.. +-+...+..+...|...|++++|...|++..+..  +.+...|..+...|...|++++|...|++..
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444555544432 1245555666666666666666666666666554  3345556666666666666666666666554


Q ss_pred             h
Q 013010          386 D  386 (451)
Q Consensus       386 ~  386 (451)
                      +
T Consensus        81 ~   81 (115)
T 2kat_A           81 A   81 (115)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=96.92  E-value=0.075  Score=52.73  Aligned_cols=183  Identities=9%  Similarity=-0.061  Sum_probs=132.2

Q ss_pred             hHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHh
Q 013010          220 FNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCK  299 (451)
Q Consensus       220 ~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~  299 (451)
                      .++|++.++++....   |-+..+|+.--..+...|...+ .+.....++++++.++.+.+.. +-+..+|+---..+.+
T Consensus        45 ~eeal~~~~~~l~~n---P~~~taW~~R~~~l~~l~~~~~-~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~  119 (567)
T 1dce_A           45 DESVLELTSQILGAN---PDFATLWNCRREVLQHLETEKS-PEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR  119 (567)
T ss_dssp             SHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHC---chhHHHHHHHHHHHHhcccccc-hhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            467788888888765   2355666655555555442100 0111124889999999998763 3366777777777888


Q ss_pred             cC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc-----
Q 013010          300 TY--RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVN-EIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA-----  371 (451)
Q Consensus       300 ~g--~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----  371 (451)
                      .+  +++++.+.++.+.+.... +..+|+.--..+.+.| .++++++.++++.+..  +-|...|+.....+.+.     
T Consensus       120 l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~--p~n~saW~~r~~ll~~l~~~~~  196 (567)
T 1dce_A          120 LPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FSNYSSWHYRSCLLPQLHPQPD  196 (567)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--CCCHHHHHHHHHHHHHHSCCCC
T ss_pred             cccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCCccHHHHHHHHHHhhccccc
Confidence            88  779999999999987533 7888888877888888 8999999999999876  57888888877777663     


Q ss_pred             ---------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCch
Q 013010          372 ---------GRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSL  411 (451)
Q Consensus       372 ---------g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~  411 (451)
                               +.+++|.+++++.+... +-+...|.-+-..+.+.|+.++
T Consensus       197 ~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          197 SGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                     55789999999888743 2256777777777777776543

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.91  E-value=0.013  Score=41.58  Aligned_cols=62  Identities=18%  Similarity=0.264  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ..+..+-..|...|++++|...+++..+..  +.+...+..+...+...|++++|.+.+++..+
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            344444455555555555555555555443  23344555555555555555555555555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.88  E-value=0.0034  Score=59.99  Aligned_cols=89  Identities=7%  Similarity=-0.128  Sum_probs=70.0

Q ss_pred             ccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCC-CHHHHHHHH
Q 013010          144 RGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF-----R-CRP-DVYAYNVVI  211 (451)
Q Consensus       144 ~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~~~li  211 (451)
                      ..|++++|..++++..+.     |...+....+++.|...|...|++++|+.++++..+.     | -.| ...+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457899999999887653     3333345678999999999999999999999988652     2 123 356789999


Q ss_pred             HHHHhcCChHHHHHHHHHhhh
Q 013010          212 NALCRVGNFNKARFLLEQMEL  232 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~  232 (451)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999988643

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.82  E-value=0.0069  Score=44.52  Aligned_cols=63  Identities=11%  Similarity=0.095  Sum_probs=37.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~  385 (451)
                      +...+..+-..|...|++++|+..|++..+..  +-+...|..+-.+|...|++++|.+.|++.+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555555566666666666666666666554  3344455566666666666666666665554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.69  E-value=0.0085  Score=57.22  Aligned_cols=93  Identities=14%  Similarity=-0.001  Sum_probs=70.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCC---CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHH
Q 013010          175 LIKVLGEEGLVNEALATFYRMKQFR---CRP----DVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVY  242 (451)
Q Consensus       175 li~~~~~~g~~~~A~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~  242 (451)
                      .+..+.+.|++++|+.++++..+..   +.|    ...+++.+..+|...|++++|+.++++...     .|-.+|-...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3555667899999999999987631   222    356789999999999999999999988753     3544444557


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010          243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM  278 (451)
Q Consensus       243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m  278 (451)
                      +++.|...|...|           ++++|+.++++.
T Consensus       373 ~l~nLa~~~~~~g-----------~~~eA~~~~~~A  397 (429)
T 3qwp_A          373 QVMKVGKLQLHQG-----------MFPQAMKNLRLA  397 (429)
T ss_dssp             HHHHHHHHHHHTT-----------CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-----------CHHHHHHHHHHH
Confidence            8999999999999           555555555544

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.67  E-value=0.0063  Score=58.11  Aligned_cols=89  Identities=8%  Similarity=-0.140  Sum_probs=70.5

Q ss_pred             hcCHHHHHHHHHHHhhc--CCCCC----CHHhHHHHHHHHHccCChhHHHHHHHHHHHc-----CCCCCccHHhHHHHHH
Q 013010          109 TLGLNKATEFYHWVERF--FDFFH----NEMTCKEMGIVFARGNNVKGLWDFLKDMSRR-----GNGELVTTSSVTCLIK  177 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~--~~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~-----~~~~~~~~~~~~~li~  177 (451)
                      .|++++|+.+++...+.  .-+.|    ...+++.|..+|...|++++|..++++..+.     |...+....+++.|..
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            35678999998887652  11222    2568999999999999999999999987653     4444456788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHhh
Q 013010          178 VLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       178 ~~~~~g~~~~A~~~~~~m~~  197 (451)
                      .|...|++++|+.+|++..+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            99999999999999998765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.57  E-value=0.013  Score=43.06  Aligned_cols=64  Identities=9%  Similarity=0.111  Sum_probs=35.1

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  197 (451)
                      +...+..+...+.+.|++++|...|++..+.+..   +...|..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD---YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444555555555666666666666655555422   333455555556666666666665555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.44  E-value=0.0057  Score=49.08  Aligned_cols=57  Identities=25%  Similarity=0.224  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhhCCCCC-CHHHHHHHHHHHHhc-----------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHH
Q 013010          186 NEALATFYRMKQFRCRP-DVYAYNVVINALCRV-----------GNFNKARFLLEQMELPGFRCPPDVYTYTILI  248 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li  248 (451)
                      ++|+..|++..+.  .| +..+|..+-.+|...           |++++|.+.|++..+..    |+...|...+
T Consensus        63 ~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~----P~~~~y~~al  131 (158)
T 1zu2_A           63 QEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ----PDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC----TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC----CCCHHHHHHH
Confidence            3555555555542  22 344555555555544           35666666666666543    5544444333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.34  E-value=0.013  Score=46.91  Aligned_cols=115  Identities=11%  Similarity=-0.029  Sum_probs=86.1

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCCh----------hHHHHHHHHHHHcCCCCCccHHhHHHH
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNV----------KGLWDFLKDMSRRGNGELVTTSSVTCL  175 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~a~~~~~~m~~~~~~~~~~~~~~~~l  175 (451)
                      ..+.+.+++|+..++...+.  -+.+...|+.+..++...+++          ++|...|++..+.+..   ...+|..+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~---~~~A~~~L   86 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK---KDEAVWCI   86 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC---cHHHHHHH
Confidence            33445588999999988864  344778888888888888765          5999999999998633   66789999


Q ss_pred             HHHHHhcC-----------CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010          176 IKVLGEEG-----------LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       176 i~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      -.+|...|           ++++|.+.|++..+  +.|+...|...+...      ++|.++.-++...
T Consensus        87 G~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~~------~ka~el~~~~~~~  147 (158)
T 1zu2_A           87 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ  147 (158)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             HHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHHH------HhCHhccCccccc
Confidence            99998774           89999999999998  568877776655543      3444544444433

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.94  E-value=0.13  Score=47.34  Aligned_cols=73  Identities=10%  Similarity=0.063  Sum_probs=54.1

Q ss_pred             CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH
Q 013010          284 VPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY  361 (451)
Q Consensus       284 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~  361 (451)
                      +.+..+|.++...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.+++....+   |...+|
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~---P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR---PGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CCcChH
Confidence            4566777777666666788888888888887775  677777777777778888888888888877764   555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=95.73  E-value=1.2  Score=41.01  Aligned_cols=75  Identities=15%  Similarity=0.024  Sum_probs=60.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010          319 IPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKL  398 (451)
Q Consensus       319 ~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~  398 (451)
                      ..+..+|..+...+...|++++|...+++....+   |+...|..+-..+.-.|++++|.+.|.+....  .|...||..
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln---~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~  348 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE---MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW  348 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence            4478888888777777899999999999999875   67777777778888899999999999888764  577766643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.43  E-value=0.25  Score=51.12  Aligned_cols=95  Identities=17%  Similarity=0.272  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      ++++|.++.+.+      .+...|..+...+.+.|+++.|.+.|..+.+         |..+...|...|+.+...++-+
T Consensus       667 ~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~  731 (814)
T 3mkq_A          667 QLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAK  731 (814)
T ss_dssp             CHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHH
Confidence            556665554322      2445666666666666666666666665543         2334444444555555555544


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010          347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE  383 (451)
Q Consensus       347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  383 (451)
                      .....|       -++....+|.+.|++++|.+++.+
T Consensus       732 ~a~~~~-------~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          732 DAETTG-------KFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHcC-------chHHHHHHHHHcCCHHHHHHHHHH
Confidence            444433       123333445555555555555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.12  E-value=0.15  Score=36.69  Aligned_cols=57  Identities=18%  Similarity=0.210  Sum_probs=35.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          295 DGCCKTYRIERALELFDDMNKKGCIPNRV-TYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      ..+...|++++|.+.++...+.. +-+.. .+..+-.+|...|++++|.+.|++..+..
T Consensus         8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            44556677777777777666542 11345 66666666667777777777777766654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.63  E-value=0.39  Score=34.33  Aligned_cols=59  Identities=12%  Similarity=0.121  Sum_probs=49.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh-hHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 013010          328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS-SYTPIIHALCEAGRVLEARDFLAELVDGG  388 (451)
Q Consensus       328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g  388 (451)
                      ....+...|++++|...+++..+..  +.+.. .+..+-.+|...|++++|.+.|++.++..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3456778999999999999998875  45667 88888899999999999999999998754

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.54  E-value=0.62  Score=36.83  Aligned_cols=64  Identities=9%  Similarity=0.073  Sum_probs=27.5

Q ss_pred             CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          321 NRVTYNSFIRYYSVVN---EIDKAIEMMRKMQNLNHGVP--TSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g---~~~~A~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      +..+--.+-.++++.+   ++++++.++++..+..  .|  ....+-.|--+|.+.|++++|.++++.+++
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4444444444444444   3334444444444432  12  122222333344555555555555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.53  E-value=0.48  Score=48.94  Aligned_cols=151  Identities=17%  Similarity=0.129  Sum_probs=96.2

Q ss_pred             HccCChhHHHH-HHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChH
Q 013010          143 ARGNNVKGLWD-FLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFN  221 (451)
Q Consensus       143 ~~~g~~~~a~~-~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  221 (451)
                      ...+++++|.+ ++..+.        +......++..+.+.|..++|+++.+.-.            .-.......|+++
T Consensus       610 ~~~~~~~~a~~~~l~~i~--------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~  669 (814)
T 3mkq_A          610 TLRGEIEEAIENVLPNVE--------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT  669 (814)
T ss_dssp             HHTTCHHHHHHHTGGGCC--------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred             HHhCCHHHHHHHHHhcCC--------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence            34678888876 442211        02224677788888899998887763211            1123356679999


Q ss_pred             HHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcC
Q 013010          222 KARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTY  301 (451)
Q Consensus       222 ~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g  301 (451)
                      .|.++.+.+        .+...|..+...+.+.+           +++.|++.|..+..         |..+...+...|
T Consensus       670 ~A~~~~~~~--------~~~~~W~~la~~al~~~-----------~~~~A~~~y~~~~d---------~~~l~~l~~~~~  721 (814)
T 3mkq_A          670 LARDLLTDE--------SAEMKWRALGDASLQRF-----------NFKLAIEAFTNAHD---------LESLFLLHSSFN  721 (814)
T ss_dssp             HHHHHHTTC--------CCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTC---------HHHHHHHHHHTT
T ss_pred             HHHHHHHhh--------CcHhHHHHHHHHHHHcC-----------CHHHHHHHHHHccC---------hhhhHHHHHHcC
Confidence            998885433        36788999999999999           88899998887743         345556666677


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 013010          302 RIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRK  347 (451)
Q Consensus       302 ~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~  347 (451)
                      +.+...++-+.....|.      ++.-..+|.+.|++++|++++.+
T Consensus       722 ~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          722 NKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             CHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence            77776666555555432      23333345556666666655544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=94.47  E-value=0.25  Score=39.13  Aligned_cols=87  Identities=15%  Similarity=0.056  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccC---ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGN---NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      +..+.+-|...... +. ++..+.-.+.-++++++   +++++..+++...+.+ .|......+-.|--+|.+.|++++|
T Consensus        14 l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A   90 (152)
T 1pc2_A           14 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence            56666777666543 33 56677666888888887   6668888888888764 1212345566677778888888888


Q ss_pred             HHHHHHHhhCCCCCC
Q 013010          189 LATFYRMKQFRCRPD  203 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~  203 (451)
                      .+.++.+.+  +.|+
T Consensus        91 ~~y~~~lL~--ieP~  103 (152)
T 1pc2_A           91 LKYVRGLLQ--TEPQ  103 (152)
T ss_dssp             HHHHHHHHH--HCTT
T ss_pred             HHHHHHHHh--cCCC
Confidence            888888887  4564

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.42  E-value=0.43  Score=34.23  Aligned_cols=66  Identities=6%  Similarity=-0.091  Sum_probs=42.1

Q ss_pred             CCHHhHHHHHHHHHccCC---hhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 013010          130 HNEMTCKEMGIVFARGNN---VKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF  198 (451)
Q Consensus       130 ~~~~~~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  198 (451)
                      .|...+..+..++...++   .++|..++++..+....   +......+...+.+.|++++|...|+.+.+.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~---~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY---NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            355555566665543333   57777777777776522   4555666667777777777777777777764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.35  E-value=0.4  Score=34.41  Aligned_cols=47  Identities=19%  Similarity=0.142  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       338 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      .++|..++++..+..  +-++.....+-..+.+.|++++|...++++.+
T Consensus        25 ~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A           25 TDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344444444444443  23333444444444444444444444444443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.32  E-value=1.4  Score=33.97  Aligned_cols=76  Identities=11%  Similarity=0.066  Sum_probs=62.0

Q ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHHHhhc
Q 013010          357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQVMK  433 (451)
Q Consensus       357 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~  433 (451)
                      +...+...++.+..+|+-+.-.+++.++.. +..|++...-.+..||.+-|+..++.+++.+.=++|++.....+..
T Consensus        90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~kEAC~~in~  165 (172)
T 1wy6_A           90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAVNT  165 (172)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhHHHHHHHHh
Confidence            456677888889999999999999888644 4567888888999999999999999999999999999877655443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.08  E-value=1.5  Score=33.68  Aligned_cols=84  Identities=11%  Similarity=-0.035  Sum_probs=64.5

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhh
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCR  261 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~  261 (451)
                      +|++..+...|-.+-     .+...++..++.+...|+-|...+++.++....   +|+....-.+..+|.+.|      
T Consensus        74 C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~---~~~~~~l~kia~Ay~Klg------  139 (172)
T 1wy6_A           74 CQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVG------  139 (172)
T ss_dssp             CSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTT------
T ss_pred             hhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccC---CCChHHHHHHHHHHHHhc------
Confidence            344444444444332     356777888999999999999999999954432   488899999999999999      


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCC
Q 013010          262 KAIRRRIWEANHLFRLMLFKGFV  284 (451)
Q Consensus       262 ~~~~~~~~~a~~~~~~m~~~~~~  284 (451)
                           +..+|.+++.+.-+.|++
T Consensus       140 -----~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A          140 -----DERDATTLLIEACKKGEK  157 (172)
T ss_dssp             -----CHHHHHHHHHHHHHTTCH
T ss_pred             -----chhhHHHHHHHHHHhhhH
Confidence                 888999999999988865

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.58  E-value=0.61  Score=34.10  Aligned_cols=67  Identities=15%  Similarity=0.149  Sum_probs=34.0

Q ss_pred             CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCC----CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010          131 NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGN----GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  197 (451)
                      +...+-.|...+.+.|+++.|...++...+...    .......++..|..+|.+.|++++|...+++..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            344455555555566666666666655544310    0112334455555555555555555555555554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.37  E-value=1.4  Score=35.71  Aligned_cols=101  Identities=8%  Similarity=-0.089  Sum_probs=70.9

Q ss_pred             hhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHH
Q 013010          107 KVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVN  186 (451)
Q Consensus       107 ~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~  186 (451)
                      -..|+++.|.++-+.+.       +...|..|.....+.|+++-|.+.|.....           +..+.-.|...|+.+
T Consensus        16 L~lg~l~~A~e~a~~l~-------~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKLN-------DSITWERLIQEALAQGNASLAEMIYQTQHS-----------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHTTCHHHHHHHHHHHC-------CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----------HHHHHHHHHHHTCHH
T ss_pred             HhcCCHHHHHHHHHHhC-------CHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----------HHHHHHHHHHhCCHH
Confidence            34567888888876653       677889999988889999998888876422           556666677778887


Q ss_pred             HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhh
Q 013010          187 EALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQME  231 (451)
Q Consensus       187 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  231 (451)
                      +-..+-+.....|      -+|.....+.-.|+++++.++|.+..
T Consensus        78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence            7666655555443      24444555666788888888886543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.37  E-value=2.7  Score=34.11  Aligned_cols=95  Identities=14%  Similarity=0.183  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      +++.|.++.+++      -+...|..|-......|+++-|.+.|....+         |..+.--|.-.|+.++-..+-+
T Consensus        20 ~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~   84 (177)
T 3mkq_B           20 NLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQN   84 (177)
T ss_dssp             CHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHH
Confidence            888888887766      2678999999999999999999999998664         4456666777888888777766


Q ss_pred             HHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Q 013010          347 KMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAE  383 (451)
Q Consensus       347 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~  383 (451)
                      .....|       -++.....+.-.|+++++.++|.+
T Consensus        85 iA~~~g-------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           85 IAQTRE-------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             HHHHTT-------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHCc-------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            665554       356666777788999999998743

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=93.07  E-value=1  Score=32.85  Aligned_cols=63  Identities=11%  Similarity=0.036  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 013010          289 AYNCLIDGCCKTYRIERALELFDDMNKK------GCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                      -+-.+...+.+.|+++.|...|+...+.      +-.+....+..|..+|.+.|+++.|...+++..+.
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3444555555666666666666554432      01123445555555555666666666666555543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=91.30  E-value=1.3  Score=39.27  Aligned_cols=95  Identities=7%  Similarity=0.022  Sum_probs=57.9

Q ss_pred             cCHHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHc-----cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh
Q 013010          110 LGLNKATEFYHWVERFFDFFHN---EMTCKEMGIVFAR-----GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE  181 (451)
Q Consensus       110 ~~~~~A~~~f~~~~~~~~~~~~---~~~~~~ll~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~  181 (451)
                      ..+.+|...+++..+   +.|+   -..|..|...|.+     .|+.++|.+.|++..+.+...  +..++......++.
T Consensus       177 ~~l~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~--~id~~v~YA~~l~~  251 (301)
T 3u64_A          177 DTVHAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAH--DPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTT--CSHHHHHHHHHTTT
T ss_pred             HhHHHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCC--CchHHHHHHHHHHH
Confidence            335666666666654   2444   4467777777776     377777777777777765321  24445666666666


Q ss_pred             c-CCHHHHHHHHHHHhhCCCC--CCHHHHHH
Q 013010          182 E-GLVNEALATFYRMKQFRCR--PDVYAYNV  209 (451)
Q Consensus       182 ~-g~~~~A~~~~~~m~~~g~~--p~~~~~~~  209 (451)
                      . |+.+++.+.+++.......  |+....|.
T Consensus       252 ~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~  282 (301)
T 3u64_A          252 PLNNRAGFDEALDRALAIDPESVPHNKLLVI  282 (301)
T ss_dssp             TTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred             hcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence            3 7777777777777765544  55444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.22  E-value=0.98  Score=42.23  Aligned_cols=73  Identities=14%  Similarity=0.026  Sum_probs=57.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHHHHHH
Q 013010          325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELV-----DGGSVPREYTYKLV  399 (451)
Q Consensus       325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~~~l  399 (451)
                      ...++..+...|+.++|...+..+....  +.+...|..++.+|.+.|+..+|.+.|+.+.     +.|+.|+..+-...
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~--P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH--PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4456777788899999998888887765  6778889999999999999999998888765     34999987754443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=90.80  E-value=2.5  Score=37.36  Aligned_cols=83  Identities=11%  Similarity=0.093  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCC---HhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhc-
Q 013010          267 RIWEANHLFRLMLFKGFVPD---VVAYNCLIDGCCKT-----YRIERALELFDDMNKKGCIP--NRVTYNSFIRYYSVV-  335 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~-  335 (451)
                      ....|...+++..+.  .|+   ...|..+...|.+.     |+.++|.+.|++..+.  .|  +..++......++.. 
T Consensus       178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~  253 (301)
T 3u64_A          178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL  253 (301)
T ss_dssp             HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred             hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence            455666666666654  343   44566666666663     6777777777776665  34  255666666666663 


Q ss_pred             CCHHHHHHHHHHHHhcCC
Q 013010          336 NEIDKAIEMMRKMQNLNH  353 (451)
Q Consensus       336 g~~~~A~~~~~~m~~~~~  353 (451)
                      |+.+++.+.+++......
T Consensus       254 gd~~~a~~~L~kAL~a~p  271 (301)
T 3u64_A          254 NNRAGFDEALDRALAIDP  271 (301)
T ss_dssp             TCHHHHHHHHHHHHHCCG
T ss_pred             CCHHHHHHHHHHHHcCCC
Confidence            677777777777666543

>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}

Probab=90.57  E-value=0.66  Score=42.53  Aligned_cols=99  Identities=12%  Similarity=0.157  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 013010          323 VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR--VLEARDFLAELVDGGSVPREYTYKLVC  400 (451)
Q Consensus       323 ~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~li  400 (451)
                      ...+.++.-|...|+.++|.+.++++.....  -.......+..++-+.++  .+.+.+++..+...|+-+.......+.
T Consensus       218 kki~~lL~EY~~s~D~~EA~~ci~EL~~p~f--hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~  295 (358)
T 3eiq_C          218 KEIDMLLKEYLLSGDISEAEHCLKELEVPHF--HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYE  295 (358)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHCCTTC--HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCHHHHHHHHHHccCCcc--hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Confidence            3457889999999999999999999864221  123345556666665543  466889999999988887766665555


Q ss_pred             HHHHhcCC----CchHHHHHHHHHHhc
Q 013010          401 DALNAAEE----PSLLDDGLRKRIRDG  423 (451)
Q Consensus       401 ~~~~~~g~----~~~a~~~~~~~~~~g  423 (451)
                      ..+....+    .-.|...+.+.+...
T Consensus       296 ~vl~~ldDl~lDiP~A~~~la~~vara  322 (358)
T 3eiq_C          296 RIYNEIPDINLDVPHSYSVLERFVEEC  322 (358)
T ss_dssp             HHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHhccHhhcccccHHHHHHHHHHHH
Confidence            55544433    334566666665433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=90.49  E-value=0.61  Score=35.51  Aligned_cols=95  Identities=8%  Similarity=0.081  Sum_probs=59.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcCCCCC--ChhhHHHHHHH
Q 013010          293 LIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDK---AIEMMRKMQNLNHGVP--TSSSYTPIIHA  367 (451)
Q Consensus       293 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~---A~~~~~~m~~~~~~~p--~~~~~~~li~~  367 (451)
                      ++..-.....+..+.+-|......|. |+..+--.+..++.+..+...   ++.++.+..+.+  .|  .....-.|.-+
T Consensus         7 ~l~~~~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg   83 (126)
T 1nzn_A            7 VLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVG   83 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHH
T ss_pred             HHhccCCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHH
Confidence            34444444455566666666555443 666666667777777776555   778888777654  24  22233344556


Q ss_pred             HHHcCCHHHHHHHHHHHHhCCCCCC
Q 013010          368 LCEAGRVLEARDFLAELVDGGSVPR  392 (451)
Q Consensus       368 ~~~~g~~~~A~~l~~~m~~~g~~p~  392 (451)
                      +.+.|++++|.++++.+++  +.|+
T Consensus        84 ~yklg~Y~~A~~~~~~lL~--~eP~  106 (126)
T 1nzn_A           84 NYRLKEYEKALKYVRGLLQ--TEPQ  106 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHH--HCTT
T ss_pred             HHHhhhHHHHHHHHHHHHH--hCCC
Confidence            7788888888888888876  3454

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=90.36  E-value=4.3  Score=31.87  Aligned_cols=115  Identities=10%  Similarity=-0.013  Sum_probs=75.0

Q ss_pred             CHHhHHHHHHHHHccCCh------hHHHHHHHHHHHcCCCCCccHHhHHHHHHHH------HhcCCHHHHHHHHHHHhhC
Q 013010          131 NEMTCKEMGIVFARGNNV------KGLWDFLKDMSRRGNGELVTTSSVTCLIKVL------GEEGLVNEALATFYRMKQF  198 (451)
Q Consensus       131 ~~~~~~~ll~~~~~~g~~------~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~------~~~g~~~~A~~~~~~m~~~  198 (451)
                      |..+|-..+..+-+.|+.      ++..++|++....- +|.. ...|..-|..+      ...+++++|.++|+.+.+.
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k-~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDK-YGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGG-GTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-Cccc-cccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            555666666666666776      67777887776653 3321 22222222211      2347899999999999764


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       199 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      +-+. ...|-.....-.+.|++..|.+++......+-   -+.....+.|.-+
T Consensus        90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~---k~~~~le~a~~nl  138 (161)
T 4h7y_A           90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA---VPLEMLEIALRNL  138 (161)
T ss_dssp             CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---BCHHHHHHHHHHH
T ss_pred             hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC---CcHHHHHHHHHhh
Confidence            2222 67777777777889999999999999998763   3555666666554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.81  E-value=1.3  Score=41.47  Aligned_cols=70  Identities=11%  Similarity=-0.020  Sum_probs=47.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHHH
Q 013010          172 VTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYTY  244 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~~  244 (451)
                      ...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|++..+     .|+.  |+..+-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~--P~~~l~  248 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID--PGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC--CCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC--CCHHHH
Confidence            4556666777777777777777776532 44667777777777777777777777776543     3654  665543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.07  E-value=19  Score=36.58  Aligned_cols=127  Identities=13%  Similarity=0.042  Sum_probs=79.4

Q ss_pred             HHHHHHHHHhcCC-hHHHHHHHHHhhhCCCCCCCCHHHHH--HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc--
Q 013010          207 YNVVINALCRVGN-FNKARFLLEQMELPGFRCPPDVYTYT--ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK--  281 (451)
Q Consensus       207 ~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~~~p~~~~~~--~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~--  281 (451)
                      ...++..+...++ ++.|..+|+++....    |...++.  .++..+...++          .--+|.+++.+..+.  
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~----p~~~~~~~~~~i~~~~~~~~----------~Ev~av~ll~~~l~~~~  316 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD----PIHDIYYKTAMITILDHIET----------KELDMITILNETLDPLL  316 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHC----GGGHHHHHHHHHHHHTTCGG----------GHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhC----CchhHHHHHHHHHHHHHhhh----------hhHHHHHHHHHHHHHhh
Confidence            3455555555666 588999999998875    5433332  23333333221          112333333333211  


Q ss_pred             ----CCCC-CH----------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 013010          282 ----GFVP-DV----------VAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMM  345 (451)
Q Consensus       282 ----~~~~-~~----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~  345 (451)
                          ...+ +.          ...+.-..-|...|+++.|.++-++....  .| +..||-.|..+|...|+++.|+-.+
T Consensus       317 ~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          317 SLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence                1111 11          12222234456789999999999998775  56 5899999999999999999999999


Q ss_pred             HHHH
Q 013010          346 RKMQ  349 (451)
Q Consensus       346 ~~m~  349 (451)
                      +.+.
T Consensus       395 NScP  398 (754)
T 4gns_B          395 NSMP  398 (754)
T ss_dssp             HHSC
T ss_pred             hcCC
Confidence            9874

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.50  E-value=2.4  Score=30.59  Aligned_cols=64  Identities=17%  Similarity=0.177  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      +.-++.+-++.+...++.|++....+.+.+|-|.+++..|.++|+-.+..-.   +...+|..++.-
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~---~~~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG---PHKEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---TCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc---CchhhHHHHHHH
Confidence            5567777788888888888888888888888888888888888888776532   344456665553

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=88.13  E-value=7.1  Score=29.59  Aligned_cols=84  Identities=13%  Similarity=0.050  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER---ALELFDDMNKKGCIP--NRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A  341 (451)
                      .+..+.+-|.+....|. ++..+--.+..++.++.+...   ++.++.++.+.+ .|  .....=.|--++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            44455555555554443 555555556666777776555   777888877763 23  223333455677888888888


Q ss_pred             HHHHHHHHhcC
Q 013010          342 IEMMRKMQNLN  352 (451)
Q Consensus       342 ~~~~~~m~~~~  352 (451)
                      .+.++.+.+..
T Consensus        94 ~~~~~~lL~~e  104 (126)
T 1nzn_A           94 LKYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhC
Confidence            88888888764

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.88  E-value=5.2  Score=28.87  Aligned_cols=48  Identities=8%  Similarity=0.188  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       305 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      ++.+-++.+....+.|++....+.+.+|.+.+++..|.++|+-.+.+.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~   75 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   75 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            444455555555555666666666666666666666666665555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=86.02  E-value=24  Score=33.44  Aligned_cols=96  Identities=13%  Similarity=0.162  Sum_probs=68.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCC--hhh
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNKK--GCIPN---RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN---HGVPT--SSS  360 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~---~~~p~--~~~  360 (451)
                      ..|...+...|++.+|.+++.++...  |....   ...+...++.|...+++..|..++.++....   ...|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            45777888899999999999987642  22111   3556777888999999999999998875321   10222  235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          361 YTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       361 ~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      |...+..+...+++.+|.+.|.+..+
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            56677777888999999888877753

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=85.72  E-value=11  Score=29.51  Aligned_cols=119  Identities=8%  Similarity=0.014  Sum_probs=58.6

Q ss_pred             CCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh----hHHHHHHHH---HhcCCHHHHHHHHH
Q 013010          239 PDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV----AYNCLIDGC---CKTYRIERALELFD  311 (451)
Q Consensus       239 p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~li~~~---~~~g~~~~a~~~~~  311 (451)
                      -|..+|-..+...-+.|++..- .    -++...++|++.... ++|+..    .|--+.--|   ...++.++|.++|+
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d-~----~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~   84 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSD-A----LLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQ   84 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCH-H----HHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCchh-h----HHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            3555666666666666644110 1    234555666655542 444421    111111111   12356666777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHH
Q 013010          312 DMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIH  366 (451)
Q Consensus       312 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~  366 (451)
                      .+.+.+-.. ...|....+.-.+.|++++|.+++......+.  -+.....+.|.
T Consensus        85 ~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~--k~~~~le~a~~  136 (161)
T 4h7y_A           85 MARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA--VPLEMLEIALR  136 (161)
T ss_dssp             HHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC--BCHHHHHHHHH
T ss_pred             HHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC--CcHHHHHHHHH
Confidence            665543333 44454444545566777777777766666552  23344444443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.97  E-value=26  Score=33.09  Aligned_cols=97  Identities=12%  Similarity=0.030  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHH---
Q 013010          243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK--GFVPD---VVAYNCLIDGCCKTYRIERALELFDDMN---  314 (451)
Q Consensus       243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~---  314 (451)
                      ....|...|...|           ++.+|.+++.++...  |....   ...+...+..|...+++..|..++....   
T Consensus       139 l~~~La~i~e~~g-----------~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~  207 (445)
T 4b4t_P          139 VTKDLVEIKKEEG-----------KIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKT  207 (445)
T ss_dssp             HHHHHHHHHHHHT-----------CHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence            3456788888888           889999999888642  22111   3456777888999999999999998864   


Q ss_pred             -hCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          315 -KKGCIPN--RVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       315 -~~g~~p~--~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                       .....|+  ..-|...+..+...+++.+|...|.+...
T Consensus       208 ~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          208 FKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence             2333333  34567777888889999999988887765

>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A

Probab=83.73  E-value=4.1  Score=36.47  Aligned_cols=95  Identities=14%  Similarity=0.172  Sum_probs=58.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 013010          325 YNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR--VLEARDFLAELVDGGSVPREYTYKLVCDA  402 (451)
Q Consensus       325 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~li~~  402 (451)
                      .+.++.-|...|+.++|.+.++++.....  -....+..+..++-+.++  .+.+.+++..+.+.|+-+.......+...
T Consensus       169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f--~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~Gf~~v  246 (307)
T 2zu6_B          169 IDMLLKEYLLSGDISEAEHCLKELEVPHF--HHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRGYERI  246 (307)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHCCGGG--HHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHcCCCcc--hHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            46788888899999999999999853211  112344455555555443  45677889999888877666554444444


Q ss_pred             HHhcCC----CchHHHHHHHHHH
Q 013010          403 LNAAEE----PSLLDDGLRKRIR  421 (451)
Q Consensus       403 ~~~~g~----~~~a~~~~~~~~~  421 (451)
                      +....+    .-.|...+.+.+.
T Consensus       247 l~~l~Dl~lDiP~A~~~la~~v~  269 (307)
T 2zu6_B          247 YNEIPDINLDVPHSYSVLERFVE  269 (307)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             HHhccHhhcccccHHHHHHHHHH
Confidence            433332    3335555555553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=83.42  E-value=19  Score=36.55  Aligned_cols=113  Identities=9%  Similarity=0.026  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHHHhcCCCCCHhh-H-HHHHHHHHhcCC-HHHHHHHHHHHHhC------CCCC-CHH----------HHHH
Q 013010          268 IWEANHLFRLMLFKGFVPDVVA-Y-NCLIDGCCKTYR-IERALELFDDMNKK------GCIP-NRV----------TYNS  327 (451)
Q Consensus       268 ~~~a~~~~~~m~~~~~~~~~~~-~-~~li~~~~~~g~-~~~a~~~~~~m~~~------g~~p-~~~----------t~~~  327 (451)
                      ++.|..+|+++.+..  |...+ | .+++..+.+.++ --+|.+++.+..+.      ...+ +..          ....
T Consensus       265 ~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~  342 (754)
T 4gns_B          265 VDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNI  342 (754)
T ss_dssp             HHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHH
Confidence            678999999988763  33322 2 233333333332 22455555544321      1222 111          1111


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Q 013010          328 FIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAEL  384 (451)
Q Consensus       328 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m  384 (451)
                      =...+...|+++.|+++-++.....  +-+-.+|..|...|...|+++.|+-.++.+
T Consensus       343 Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          343 QTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            1334567899999999999998864  456779999999999999999999988877

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=83.19  E-value=7.3  Score=29.79  Aligned_cols=64  Identities=17%  Similarity=0.196  Sum_probs=47.3

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      +.-+..+-++.+...++.|+.....+.+.+|-+.+++..|.++|+-.+.+-   .+...+|..+++-
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~---~~~~~iY~y~lqE  131 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA---GPHKEIYPYVIQE  131 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---CCchhhHHHHHHH
Confidence            455667777777777888888888888888888888888888888877653   2444556655553

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=82.03  E-value=36  Score=35.48  Aligned_cols=121  Identities=9%  Similarity=-0.101  Sum_probs=56.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010          296 GCCKTYRIERALELFDDMNKKGCIPNRVTYN--SFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR  373 (451)
Q Consensus       296 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~  373 (451)
                      ++...|+.+.+..+++.+.... .|....-.  ++.-+|+-.|+.....++++.+....  ..++.....+--++...|+
T Consensus       533 Gll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~--~d~VRraAViaLGlI~~g~  609 (963)
T 4ady_A          533 ALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS--NDDVRRAAVIALGFVLLRD  609 (963)
T ss_dssp             HHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTSSS
T ss_pred             HhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHhhccCC
Confidence            3445677777777777666531 22222222  22334556677666666777766532  2233322222223333455


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCc-hHHHHHHHHH
Q 013010          374 VLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPS-LLDDGLRKRI  420 (451)
Q Consensus       374 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~-~a~~~~~~~~  420 (451)
                      .+.+.+++..+.+.+ .|...--.++.-+....|... .+.+.+..+.
T Consensus       610 ~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~  656 (963)
T 4ady_A          610 YTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLT  656 (963)
T ss_dssp             CSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence            444555554444332 233333333444444444432 2444555554

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=81.93  E-value=12  Score=28.66  Aligned_cols=59  Identities=12%  Similarity=0.234  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010          305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII  365 (451)
Q Consensus       305 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  365 (451)
                      +..+-++.+....+.|++....+-+.+|.+.+++..|.++|+-.+.+.  .+....|..++
T Consensus        71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l  129 (152)
T 2y69_E           71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI  129 (152)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence            444555555555666666666666666666666666666666666544  23344455554

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=80.80  E-value=13  Score=30.76  Aligned_cols=87  Identities=18%  Similarity=0.143  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHH---HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCK---EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      +++++..|....   .+.-|..-..   ..+..+ .++....+.++|..|...|++.. .+.-|......+-..|++.+|
T Consensus        60 LErc~~~F~~~~---rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~-~AlfYe~wA~~lE~~g~~~~A  134 (202)
T 3esl_A           60 MERCLIYIQDME---TYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTK-LSLFYEEFSKLLENAQFFLEA  134 (202)
T ss_dssp             HHHHHHHHTTCG---GGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTT-BHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHhcccc---cccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHH-HHHHHHHHHHHHHHcCCHHHH
Confidence            355555555433   3444544332   222222 14456788889988888887753 345677888888888999999


Q ss_pred             HHHHHHHhhCCCCCC
Q 013010          189 LATFYRMKQFRCRPD  203 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~  203 (451)
                      .++|+.-.+.+-.|-
T Consensus       135 ~~Vy~~GI~~~A~P~  149 (202)
T 3esl_A          135 KVLLELGAENNCRPY  149 (202)
T ss_dssp             HHHHHHHHHTTCBSH
T ss_pred             HHHHHHHHHcCCccH
Confidence            999988888777773

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.40  E-value=37  Score=31.48  Aligned_cols=173  Identities=9%  Similarity=-0.089  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCC---CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010          206 AYNVVINALCRVGNFNKARFLLEQMELPGFRCPP---DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG  282 (451)
Q Consensus       206 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p---~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~  282 (451)
                      ....|...|.+.|+.++..+++...+.-=.. -|   .......+++.+....+..      ...++-..+.++......
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~kak~~k~v~~l~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~   93 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSS-ISKAKAAKLVRSLVDMFLDMDAGT------GIEVQLCKDCIEWAKQEK   93 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGG-SCHHHHHHHHHHHHHHHTTSCCCH------HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHHHHHHH
Confidence            3455666777777777777777665432110 01   2334556666666554221      013333444444433321


Q ss_pred             CCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 013010          283 FVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-----NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG-V  355 (451)
Q Consensus       283 ~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~  355 (451)
                      -.. ....=.-+...|...|++.+|.+++..+.+.=-..     -...|..-+..|...+++.++...+......... .
T Consensus        94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~  173 (394)
T 3txn_A           94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY  173 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence            000 00111257888999999999999998887631111     2345666778899999999999999877643211 1


Q ss_pred             CChhhHHH--HHH--HHH-HcCCHHHHHHHHHHHH
Q 013010          356 PTSSSYTP--IIH--ALC-EAGRVLEARDFLAELV  385 (451)
Q Consensus       356 p~~~~~~~--li~--~~~-~~g~~~~A~~l~~~m~  385 (451)
                      +++.....  ...  .+. ..+++..|...|-+..
T Consensus       174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            33332221  112  234 6789999988876654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	451
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.76
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.68
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.51
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.41
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.05
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.03
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.98
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	98.91
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.8
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.75
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.63
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.53
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.31
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.25
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.24
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.12
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.08
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.07
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.06
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.06
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.06
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.96
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.88
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.85
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.78
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.77
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.72
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.56
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.47
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.46
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.46
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.44
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.44
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.28
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.25
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.25
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.19
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.15
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.11
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.1
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.08
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	96.97
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	96.93
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.91
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	96.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.47
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.85
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.83
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.13
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.04
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.53
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.74
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.43
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.22
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	85.88

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.9e-15  Score=139.84  Aligned_cols=292  Identities=12%  Similarity=0.006  Sum_probs=241.8

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV  185 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~  185 (451)
                      +-..|++++|++.|+.+.+.  .+-+...+..+...|.+.|++++|...++...+.+..   +..+|..+...|.+.|++
T Consensus         9 ~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~---~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           9 EYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHhhhhccc
Confidence            44578899999999999865  3446788888999999999999999999999887632   567899999999999999


Q ss_pred             HHHHHHHHHHhhCCCC----------------------------------------------------------------
Q 013010          186 NEALATFYRMKQFRCR----------------------------------------------------------------  201 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~----------------------------------------------------------------  201 (451)
                      ++|...+....+....                                                                
T Consensus        84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T d1w3ba_          84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhc
Confidence            9999998877653211                                                                


Q ss_pred             ---CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010          202 ---PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM  278 (451)
Q Consensus       202 ---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m  278 (451)
                         -+...+..+...+...|++++|...+++.....   |-+..+|..+...+...|           ++++|...+...
T Consensus       164 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---p~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~~  229 (388)
T d1w3ba_         164 TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD---PNFLDAYINLGNVLKEAR-----------IFDRAVAAYLRA  229 (388)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHTTT-----------CTTHHHHHHHHH
T ss_pred             cCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC---cccHHHHHHHhhhhhccc-----------cHHHHHHHHHHh
Confidence               123445555666777888999999998887654   346778888889999988           888999999888


Q ss_pred             HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh
Q 013010          279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS  358 (451)
Q Consensus       279 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~  358 (451)
                      ...+ ..+...+..+...+.+.|++++|...|++..+.. +-+..++..+...|...|++++|.+.++......  +.+.
T Consensus       230 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~  305 (388)
T d1w3ba_         230 LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC--PTHA  305 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC--TTCH
T ss_pred             HHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC--Cccc
Confidence            7653 3456778888899999999999999999988763 2257889999999999999999999999998876  6778


Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHh
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVP-REYTYKLVCDALNAAEEPSLLDDGLRKRIRD  422 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~  422 (451)
                      ..+..+...+...|++++|.+.|++.++.  .| +..++..+..+|.+.|++++|.+.+++.++.
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            88999999999999999999999998864  34 4678889999999999999999999998853

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.1e-13  Score=128.92  Aligned_cols=282  Identities=14%  Similarity=0.072  Sum_probs=232.2

Q ss_pred             CchhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCC------------------
Q 013010          104 DPQKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGE------------------  165 (451)
Q Consensus       104 ~~~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~------------------  165 (451)
                      ..+...+++++|+..|+...+.  .+-+..++..+...|.+.|++++|...+..........                  
T Consensus        41 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  118 (388)
T d1w3ba_          41 SIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME  118 (388)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhcccccccccccccccccccccccccccccccccccccc
Confidence            3466678899999999998864  34467789999999999999999999987766542110                  


Q ss_pred             -----------------------------------------------CccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 013010          166 -----------------------------------------------LVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF  198 (451)
Q Consensus       166 -----------------------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  198 (451)
                                                                     +.+...+..+...+...|++++|...+++..+.
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  198 (388)
T d1w3ba_         119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL  198 (388)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHh
Confidence                                                           012345666677788899999999999998874


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHH
Q 013010          199 RCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLM  278 (451)
Q Consensus       199 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m  278 (451)
                      . +-+..+|..+...+...|++++|...+.+......   .+...+..+...+.+.|           ++++|...|++.
T Consensus       199 ~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~-----------~~~~A~~~~~~a  263 (388)
T d1w3ba_         199 D-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP---NHAVVHGNLACVYYEQG-----------LIDLAIDTYRRA  263 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHH
T ss_pred             C-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh---hHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHH
Confidence            3 23577889999999999999999999999888753   57788889999999999           899999999998


Q ss_pred             HhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh
Q 013010          279 LFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS  358 (451)
Q Consensus       279 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~  358 (451)
                      .+.. +-+..++..+...+...|++++|.+.++...... +.+...+..+...|...|++++|++.|++..+..  +-+.
T Consensus       264 l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~  339 (388)
T d1w3ba_         264 IELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFA  339 (388)
T ss_dssp             HHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--TTCH
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCH
Confidence            8753 3356788889999999999999999999887763 4577888999999999999999999999998765  4567


Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCC
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR-EYTYKLVCDALNAAEE  408 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~  408 (451)
                      .++..+...|.+.|++++|.+.|++.++.  .|+ ...|..+..+|.+.||
T Consensus       340 ~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         340 AAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            78889999999999999999999998874  464 6788899999888775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3e-11  Score=109.84  Aligned_cols=255  Identities=13%  Similarity=0.029  Sum_probs=193.4

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 013010          137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR  216 (451)
Q Consensus       137 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  216 (451)
                      .....+.+.|++++|...|+...+....   +..+|..+..+|...|++++|...|++..+.. +-+...|..+...|..
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence            3566677899999999999999887632   56788889999999999999999999888743 2357788888889999


Q ss_pred             cCChHHHHHHHHHhhhCCCCCCCCHHH----------------HHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHh
Q 013010          217 VGNFNKARFLLEQMELPGFRCPPDVYT----------------YTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLF  280 (451)
Q Consensus       217 ~g~~~~a~~~~~~m~~~g~~~~p~~~~----------------~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~  280 (451)
                      .|++++|.+.+++.....    |+...                ....+..+...           +.+.+|...|.+..+
T Consensus       100 ~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~a~~~~~~al~  164 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYT----PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD-----------SLFLEVKELFLAAVR  164 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTS----TTTGGGCC---------------CTTHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhHHHhc----cchHHHHHhhhhhhhhcccccchhhHHHHHHh-----------hHHHHHHHHHHHHHH
Confidence            999999999998887653    22110                01111112222           277788888887765


Q ss_pred             cC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh
Q 013010          281 KG-FVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS  359 (451)
Q Consensus       281 ~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~  359 (451)
                      .. -..+..++..+...+...|++++|...++...... +-+..+|..+...|...|++++|.+.|++..+..  +-+..
T Consensus       165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~  241 (323)
T d1fcha_         165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--PGYIR  241 (323)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred             HhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh--hccHH
Confidence            32 23456778888889999999999999999987753 2257889999999999999999999999998865  45677


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhC----------CCCCCHHHHHHHHHHHHhcCCCchHH
Q 013010          360 SYTPIIHALCEAGRVLEARDFLAELVDG----------GSVPREYTYKLVCDALNAAEEPSLLD  413 (451)
Q Consensus       360 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----------g~~p~~~t~~~li~~~~~~g~~~~a~  413 (451)
                      .|..+..+|.+.|++++|.+.|++.++.          ........|..+-.++...|+.+.+.
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            8999999999999999999999988751          12223446677777777778777543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.1e-10  Score=106.12  Aligned_cols=224  Identities=13%  Similarity=0.008  Sum_probs=179.2

Q ss_pred             hhhhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCH
Q 013010          106 QKVTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLV  185 (451)
Q Consensus       106 ~~~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~  185 (451)
                      +...|++++|+..|+.+.+.  .|.+...|..+..++...|++++|...+.+..+....   +...|..+...|...|++
T Consensus        29 ~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD---NQTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc---cccccccccccccccccc
Confidence            55678899999999999864  3446788999999999999999999999999887532   567889999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCCH----------------HHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010          186 NEALATFYRMKQFRCRPDV----------------YAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS  249 (451)
Q Consensus       186 ~~A~~~~~~m~~~g~~p~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~  249 (451)
                      ++|.+.+++.....  |+.                ......+..+...+.+.+|...|.+....... .++..++..+..
T Consensus       104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~-~~~~~~~~~l~~  180 (323)
T d1fcha_         104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGV  180 (323)
T ss_dssp             HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT-SCCHHHHHHHHH
T ss_pred             cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc-ccccccchhhHH
Confidence            99999999987642  221                11112233444556778888888887654321 256788889999


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSF  328 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~l  328 (451)
                      .+...|           ++++|...|++..... +-+..+|..+...|...|++++|.+.|+...+.  .| +..+|..+
T Consensus       181 ~~~~~~-----------~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~l  246 (323)
T d1fcha_         181 LFNLSG-----------EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNL  246 (323)
T ss_dssp             HHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHHH-----------HHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHH
Confidence            999999           8999999999887653 235678888999999999999999999998875  34 57789999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhc
Q 013010          329 IRYYSVVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       329 i~~~~~~g~~~~A~~~~~~m~~~  351 (451)
                      ..+|.+.|++++|++.|++..+.
T Consensus       247 g~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         247 GISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999999987763

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=4.4e-08  Score=88.20  Aligned_cols=217  Identities=8%  Similarity=0.005  Sum_probs=157.0

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEG-LVNEALATFYRMKQFRCRPDVYAYNVVI  211 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li  211 (451)
                      ..|+.+...+.+.+.+++|.++++.+.+.+..   +...|+....++...| ++++|+..++...+.. +-+..+|+.+.
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~---~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            34555666777888999999999999888633   6667888888888766 5899999999887753 33688888888


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHH
Q 013010          212 NALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYN  291 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  291 (451)
                      ..+.+.|++++|+..++++.+..   |-+..+|..+...+...|           ++++|++.++.+.+.. +-+...|+
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~d---p~n~~a~~~~~~~~~~~~-----------~~~~Al~~~~~al~~~-p~n~~a~~  184 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQD---AKNYHAWQHRQWVIQEFK-----------LWDNELQYVDQLLKED-VRNNSVWN  184 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHT-----------CCTTHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHhhccHHHHHHHHhhhhhhh---hcchHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHC-CccHHHHH
Confidence            88899999999999999988765   357888999999999888           7778888888888753 23566777


Q ss_pred             HHHHHHHhcCC------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 013010          292 CLIDGCCKTYR------IERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPII  365 (451)
Q Consensus       292 ~li~~~~~~g~------~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li  365 (451)
                      .+...+.+.+.      +++|.+.+....+.. +-+...|+.+...+.. ...+++.+.++...+......+...+..+.
T Consensus       185 ~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~  262 (315)
T d2h6fa1         185 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLV  262 (315)
T ss_dssp             HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHH
Confidence            66666665554      567888887776653 2256777666555444 345777777777766543233455566666


Q ss_pred             HHHHH
Q 013010          366 HALCE  370 (451)
Q Consensus       366 ~~~~~  370 (451)
                      ..|..
T Consensus       263 ~~y~~  267 (315)
T d2h6fa1         263 DIYED  267 (315)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=9.7e-08  Score=85.64  Aligned_cols=221  Identities=10%  Similarity=0.018  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHc--------------cCChhHHHHHHHHHHHcCCCCCccHHhHHHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNEMTCKEMGIVFAR--------------GNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIK  177 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~--------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~  177 (451)
                      .+++..+|+.+...  ++.+...|...+..+-+              .+..++|..++++..+...+  .+...|...+.
T Consensus        32 ~~Rv~~vyerAl~~--~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p--~~~~l~~~ya~  107 (308)
T d2onda1          32 TKRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK--KNMLLYFAYAD  107 (308)
T ss_dssp             HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT--TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC--CCHHHHHHHHH
Confidence            45666777777754  33355555554443322              12345566666666554221  24445666666


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH-HHhcCC
Q 013010          178 VLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS-YCKYGM  256 (451)
Q Consensus       178 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~-~~~~g~  256 (451)
                      .+.+.|++++|..+|+.+.+........+|...+..+.+.|+++.|.++|++..+.+.   .+...|...... +...| 
T Consensus       108 ~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~---~~~~~~~~~a~~e~~~~~-  183 (308)
T d2onda1         108 YEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR---TRHHVYVTAALMEYYCSK-  183 (308)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT---CCTHHHHHHHHHHHHTSC-
T ss_pred             HHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHhcc-
Confidence            6666777777777777766543222234566666666667777777777776665542   233333332222 22234 


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHH
Q 013010          257 QTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG-CIPN--RVTYNSFIRYYS  333 (451)
Q Consensus       257 ~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~t~~~li~~~~  333 (451)
                                +.+.|..+|+.+.+. .+.+...+...+..+...|+++.|..+|++..... ..|.  ...|...+..-.
T Consensus       184 ----------~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~  252 (308)
T d2onda1         184 ----------DKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             ----------CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence                      555666666666553 23345556666666666666666666666655432 2332  345666666556


Q ss_pred             hcCCHHHHHHHHHHHHhc
Q 013010          334 VVNEIDKAIEMMRKMQNL  351 (451)
Q Consensus       334 ~~g~~~~A~~~~~~m~~~  351 (451)
                      ..|+.+.+..+++++.+.
T Consensus       253 ~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         253 NIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHSCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            666666666666666554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=2.5e-07  Score=83.71  Aligned_cols=299  Identities=10%  Similarity=0.005  Sum_probs=204.2

Q ss_pred             chhhhcCHHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHHH
Q 013010          105 PQKVTLGLNKATEFYHWVERFFDFFHN---EMTCKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKV  178 (451)
Q Consensus       105 ~~~~~~~~~~A~~~f~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~~  178 (451)
                      .+...|++++|+.+|+.......-.++   ...+..+...+...|++++|...++...+..   ........++..+...
T Consensus        21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  100 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  100 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            355678899999999998764111111   2467778889999999999999999876542   1112234556677788


Q ss_pred             HHhcCCHHHHHHHHHHHhh----CCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCC--CCCCHHHHHHHHH
Q 013010          179 LGEEGLVNEALATFYRMKQ----FRCR--P-DVYAYNVVINALCRVGNFNKARFLLEQMELPGFR--CPPDVYTYTILIS  249 (451)
Q Consensus       179 ~~~~g~~~~A~~~~~~m~~----~g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~~p~~~~~~~li~  249 (451)
                      +...|++..+...+.+...    .+..  + ....+..+...+...|+++.+...+.........  ......++..+..
T Consensus       101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (366)
T d1hz4a_         101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  180 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            8899999999999887654    1111  1 1235566777888999999999999887653221  1134556666777


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHHh----cCCCC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---
Q 013010          250 SYCKYGMQTGCRKAIRRRIWEANHLFRLMLF----KGFVP--DVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP---  320 (451)
Q Consensus       250 ~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~----~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---  320 (451)
                      .+...+           ....+...+.+...    .+..+  ....+..+...+...|++++|...+..........   
T Consensus       181 ~~~~~~-----------~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  249 (366)
T d1hz4a_         181 CSLARG-----------DLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  249 (366)
T ss_dssp             HHHHHT-----------CHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             HHHhhh-----------hHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH
Confidence            777777           55566655554432    11111  12345666677889999999999999876543222   


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-ChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCC
Q 013010          321 NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNL----NHGVP-TSSSYTPIIHALCEAGRVLEARDFLAELVD----GGSVP  391 (451)
Q Consensus       321 ~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p  391 (451)
                      ....+..+...|...|++++|...+++....    +. .| ....+..+-..|.+.|++++|.+.+++..+    .|...
T Consensus       250 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~  328 (366)
T d1hz4a_         250 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRL-MSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFIS  328 (366)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhccc-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHH
Confidence            3455667888999999999999999987642    22 23 245677788899999999999999987653    23321


Q ss_pred             ----CHHHHHHHHHHHHhcCCCchHHHH
Q 013010          392 ----REYTYKLVCDALNAAEEPSLLDDG  415 (451)
Q Consensus       392 ----~~~t~~~li~~~~~~g~~~~a~~~  415 (451)
                          ....+..++..+...++.+++.+.
T Consensus       329 ~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         329 HFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence                233456677778888888766543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=8.8e-08  Score=85.90  Aligned_cols=189  Identities=11%  Similarity=0.023  Sum_probs=136.7

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH
Q 013010          183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK  262 (451)
Q Consensus       183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~  262 (451)
                      +..++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+++......  ....+|...+..+.+.|       
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~--~~~~~w~~~~~~~~~~~-------  148 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPTLVYIQYMKFARRAE-------  148 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CTHHHHHHHHHHHHHHH-------
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHcC-------
Confidence            345788888888887555556677888888888889999999999988765421  23456888888888877       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 013010          263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLID-GCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKA  341 (451)
Q Consensus       263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A  341 (451)
                          +++.|.++|....+.+. .+...|-.... -+...|+.+.|..+|+.+.+. .+-+...|...+..+...|+++.|
T Consensus       149 ----~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~a  222 (308)
T d2onda1         149 ----GIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             ----CHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             ----ChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHH
Confidence                78888888888876532 23333333332 234457888899999888775 233577888888888889999999


Q ss_pred             HHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          342 IEMMRKMQNLNHGVPT--SSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       342 ~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ..+|++..+.....|.  ...|...+.--...|+.+.+.++++++.+
T Consensus       223 R~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         223 RVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999988776532333  34677777766778899988888887764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2.8e-07  Score=83.36  Aligned_cols=274  Identities=14%  Similarity=0.040  Sum_probs=195.2

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCCCc--cHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----C-CCCHHHHHH
Q 013010          137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELV--TTSSVTCLIKVLGEEGLVNEALATFYRMKQFR----C-RPDVYAYNV  209 (451)
Q Consensus       137 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~-~p~~~~~~~  209 (451)
                      .....+...|++++|.+++++..+.......  ....++.+...|...|++++|...|++..+..    . .....++..
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   96 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   96 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence            3455677899999999999998876432211  13467778889999999999999999886521    1 112345667


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhh----CCCCCCC-CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc---
Q 013010          210 VINALCRVGNFNKARFLLEQMEL----PGFRCPP-DVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK---  281 (451)
Q Consensus       210 li~~~~~~g~~~~a~~~~~~m~~----~g~~~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~---  281 (451)
                      +...+...|++..+...+.+...    .+....+ ....+..+...+...|           +++.+...+......   
T Consensus        97 ~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~-----------~~~~a~~~~~~~~~~~~~  165 (366)
T d1hz4a_          97 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA-----------RLDEAEASARSGIEVLSS  165 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc-----------chhhhHHHHHHHHHHhhh
Confidence            77788899999999998877643    2211112 2235666778888888           888888888777653   


Q ss_pred             -CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 013010          282 -GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKK----GCIP--NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG  354 (451)
Q Consensus       282 -~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  354 (451)
                       +......++......+...+....+...+.+....    +..+  ....+..+...+...|++++|...+.........
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  245 (366)
T d1hz4a_         166 YQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFA  245 (366)
T ss_dssp             SCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCT
T ss_pred             hhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccc
Confidence             22233455666677788889999998888765432    2112  1334566677788999999999999987765431


Q ss_pred             --CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 013010          355 --VPTSSSYTPIIHALCEAGRVLEARDFLAELVD----GGSVPR-EYTYKLVCDALNAAEEPSLLDDGLRKRIR  421 (451)
Q Consensus       355 --~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~a~~~~~~~~~  421 (451)
                        ......+..+...+...|++++|...+++...    .+..|+ ...+..+..+|.+.|+++.|.+.+++.++
T Consensus       246 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         246 NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence              12234556678889999999999999988763    344444 45788889999999999999999998764

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=2e-07  Score=83.73  Aligned_cols=232  Identities=11%  Similarity=0.063  Sum_probs=177.7

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHhhhCCCCCCCCHHHHHHH
Q 013010          169 TSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVG-NFNKARFLLEQMELPGFRCPPDVYTYTIL  247 (451)
Q Consensus       169 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~~~p~~~~~~~l  247 (451)
                      ...|+.+-..+.+.+..++|+++++++.+.. +-+...|+....++...| ++++|+..++...+..   |-+..+|..+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~---p~~~~a~~~~  118 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ---PKNYQVWHHR  118 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC---TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH---HhhhhHHHHH
Confidence            4567777777888999999999999999853 235678888888888876 5899999999998775   3578999999


Q ss_pred             HHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 013010          248 ISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNS  327 (451)
Q Consensus       248 i~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~  327 (451)
                      ...+.+.|           ++++|+..+..+.+.. +-+...|..+...+.+.|++++|.+.++.+.+.+. -+...|+.
T Consensus       119 ~~~~~~l~-----------~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~  185 (315)
T d2h6fa1         119 RVLVEWLR-----------DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQ  185 (315)
T ss_dssp             HHHHHHHT-----------CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             hHHHHhhc-----------cHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHH
Confidence            99999999           7889999999998753 34688999999999999999999999999988742 26778887


Q ss_pred             HHHHHHhcCC------HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHH
Q 013010          328 FIRYYSVVNE------IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSV-PREYTYKLVC  400 (451)
Q Consensus       328 li~~~~~~g~------~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li  400 (451)
                      +...+.+.+.      +++|++.+....+..  +-+...|..+...+.. ...+++.+.++...+.... .+...+..+.
T Consensus       186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~--P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~  262 (315)
T d2h6fa1         186 RYFVISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLV  262 (315)
T ss_dssp             HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred             HHHHHHHccccchhhhhHHhHHHHHHHHHhC--CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHH
Confidence            7666666554      688999999988876  4567777777655544 4467788888777654322 3466677777


Q ss_pred             HHHHhc--CCCchHHHHHHHHH
Q 013010          401 DALNAA--EEPSLLDDGLRKRI  420 (451)
Q Consensus       401 ~~~~~~--g~~~~a~~~~~~~~  420 (451)
                      ..|...  +..+.+...+.+.+
T Consensus       263 ~~y~~~~~~~~~~~~~~~~ka~  284 (315)
T d2h6fa1         263 DIYEDMLENQCDNKEDILNKAL  284 (315)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHH
Confidence            777554  55566666555543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.80  E-value=2.2e-07  Score=80.56  Aligned_cols=218  Identities=13%  Similarity=0.002  Sum_probs=138.3

Q ss_pred             HHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHH
Q 013010          112 LNKATEFYHWVERFFDFFH--NEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEAL  189 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  189 (451)
                      .+.|+.-++.........+  ...+|..+...|.+.|++++|...|++..+....   +..+|+.+..+|.+.|++++|+
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~---~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD---MPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC---CHHHHhhhchHHHHHHHHHHhh
Confidence            4566666666665433222  2346777888999999999999999999987633   6778999999999999999999


Q ss_pred             HHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 013010          190 ATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW  269 (451)
Q Consensus       190 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~  269 (451)
                      ..|++..+.. +-+..+|..+..+|...|++++|.+.|+...+..   |.+......+..++.+.+           ..+
T Consensus        92 ~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~-----------~~~  156 (259)
T d1xnfa_          92 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD---PNDPFRSLWLYLAEQKLD-----------EKQ  156 (259)
T ss_dssp             HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHC-----------HHH
T ss_pred             hhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc---cccHHHHHHHHHHHHHhh-----------hHH
Confidence            9999998853 2346778888889999999999999999988765   235555444445555555           444


Q ss_pred             HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCC----HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 013010          270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYR----IERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEM  344 (451)
Q Consensus       270 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~----~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~  344 (451)
                      .+..+........  ++...++ ++..+.....    .+.+...+.....  ..| ...+|..+-..|...|++++|...
T Consensus       157 ~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~  231 (259)
T d1xnfa_         157 AKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATAL  231 (259)
T ss_dssp             HHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4444444444332  2222222 2222222111    1111111111111  112 134555666777778888888888


Q ss_pred             HHHHHhcC
Q 013010          345 MRKMQNLN  352 (451)
Q Consensus       345 ~~~m~~~~  352 (451)
                      |+......
T Consensus       232 ~~~al~~~  239 (259)
T d1xnfa_         232 FKLAVANN  239 (259)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHcC
Confidence            88777643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.4e-07  Score=80.34  Aligned_cols=221  Identities=13%  Similarity=-0.012  Sum_probs=145.8

Q ss_pred             ChhHHHHHHHHHHHcCC-CCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 013010          147 NVKGLWDFLKDMSRRGN-GELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARF  225 (451)
Q Consensus       147 ~~~~a~~~~~~m~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  225 (451)
                      +.+.+..-+++...... .+.-...+|..+..+|.+.|++++|.+.|++..+.. +-+..+|+.+..+|.+.|++++|.+
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence            34555556666665432 222245577788889999999999999999998853 3368889999999999999999999


Q ss_pred             HHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHH
Q 013010          226 LLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIER  305 (451)
Q Consensus       226 ~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~  305 (451)
                      .|++..+..   |-+..++..+..+|...|           ++++|...|+...+.. +.+......+..++.+.+..+.
T Consensus        93 ~~~~al~~~---p~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~  157 (259)
T d1xnfa_          93 AFDSVLELD---PTYNYAHLNRGIALYYGG-----------RDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQA  157 (259)
T ss_dssp             HHHHHHHHC---TTCTHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHH
T ss_pred             hhhHHHHHH---hhhhhhHHHHHHHHHHHh-----------hHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHH
Confidence            999998865   346678888999999999           8899999999887653 2234444344445556666666


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHH
Q 013010          306 ALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE----IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFL  381 (451)
Q Consensus       306 a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~----~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~  381 (451)
                      +..+........-.+  ..++ ++..+.....    .+.+...+.......  +-...+|..+-..|...|++++|.+.|
T Consensus       158 ~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~  232 (259)
T d1xnfa_         158 KEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLA--EHLSETNFYLGKYYLSLGDLDSATALF  232 (259)
T ss_dssp             HHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC--cccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            666655555543222  2222 2222222211    222222222111111  112346667788899999999999999


Q ss_pred             HHHHhCC
Q 013010          382 AELVDGG  388 (451)
Q Consensus       382 ~~m~~~g  388 (451)
                      +..++..
T Consensus       233 ~~al~~~  239 (259)
T d1xnfa_         233 KLAVANN  239 (259)
T ss_dssp             HHHHTTC
T ss_pred             HHHHHcC
Confidence            9988643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.63  E-value=4e-07  Score=82.44  Aligned_cols=262  Identities=8%  Similarity=-0.078  Sum_probs=180.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCCH-HhHHHH---HHHHH-------ccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHH
Q 013010          112 LNKATEFYHWVERFFDFFHNE-MTCKEM---GIVFA-------RGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLG  180 (451)
Q Consensus       112 ~~~A~~~f~~~~~~~~~~~~~-~~~~~l---l~~~~-------~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~  180 (451)
                      .++|+++++.+...   .|+. ..|+..   +..+.       ..|++++|..+++...+.+.+   +...|..+..++.
T Consensus        45 ~~~al~~~~~~l~~---~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk---~~~~~~~~~~~~~  118 (334)
T d1dcea1          45 DESVLELTSQILGA---NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK---SYGTWHHRCWLLS  118 (334)
T ss_dssp             SHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC---cHHHHHHhhHHHH
Confidence            37999999998854   4443 334332   22222       345578999999999887633   6667777777777


Q ss_pred             hcC--CHHHHHHHHHHHhhCCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCc
Q 013010          181 EEG--LVNEALATFYRMKQFRCRPDVYAYNVV-INALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQ  257 (451)
Q Consensus       181 ~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~  257 (451)
                      ..+  ++++|...++++.+.. +++...+... ...+...+.+++|+..++......   |-+..+|+.+...+.+.|++
T Consensus       119 ~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~---p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         119 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---FSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---CCCHHHHHHHHHHHHHHSCC
T ss_pred             HhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHhcCH
Confidence            765  5899999999998753 3356665544 466777899999999999998876   35888999999999999966


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 013010          258 TGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNE  337 (451)
Q Consensus       258 ~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~  337 (451)
                      +.+..    .+..+..++..-            ..+...+...+..+++...+....... +++...+..+...+...|+
T Consensus       195 ~~A~~----~~~~~~~~~~~~------------~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~  257 (334)
T d1dcea1         195 PDSGP----QGRLPENVLLKE------------LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQS  257 (334)
T ss_dssp             CCSSS----CCSSCHHHHHHH------------HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHH
T ss_pred             HHHHH----HHHHhHHhHHHH------------HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhh
Confidence            55544    222222222211            112233455566677777777766553 3345556667777788889


Q ss_pred             HHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHH
Q 013010          338 IDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPRE-YTYKLVCDALN  404 (451)
Q Consensus       338 ~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~li~~~~  404 (451)
                      .++|...+.+.....  +-+...|..+...|...|++++|.+.++..++  +.|+. .-|..|...+.
T Consensus       258 ~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         258 ELESCKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHh
Confidence            999999998887655  34566778888889999999999999999887  44643 34555544444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=4e-07  Score=82.42  Aligned_cols=262  Identities=8%  Similarity=-0.080  Sum_probs=186.7

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHH---H-------HhcCCHHHHHHHHHHHhhCCCCCCH
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKV---L-------GEEGLVNEALATFYRMKQFRCRPDV  204 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~---~-------~~~g~~~~A~~~~~~m~~~g~~p~~  204 (451)
                      +..++....+.+..++|.++++...+.++.   +...|+..-..   .       ...|++++|+.+++...+.. +-+.
T Consensus        32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~---~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~  107 (334)
T d1dcea1          32 TQAVFQKRQAGELDESVLELTSQILGANPD---FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSY  107 (334)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHCCC---cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcH
Confidence            333444444555568999999999987633   44455443222   2       23445789999999988743 3467


Q ss_pred             HHHHHHHHHHHhcCC--hHHHHHHHHHhhhCCCCCCCCHHHHHHHH-HHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          205 YAYNVVINALCRVGN--FNKARFLLEQMELPGFRCPPDVYTYTILI-SSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       205 ~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~~~p~~~~~~~li-~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      ..|..+..++...++  +++|...+.++....   +++...+...+ ..+...+           ..++|+..++...+.
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~---~~~~~~~~~~~~~~~~~~~-----------~~~~Al~~~~~~i~~  173 (334)
T d1dcea1         108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD---ERNFHCWDYRRFVAAQAAV-----------APAEELAFTDSLITR  173 (334)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTCC-----------CHHHHHHHHHTTTTT
T ss_pred             HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC---chhhhhhhhHHHHHHHhcc-----------ccHHHHHHHHHHHHc
Confidence            778777777777654  789999999988764   35666665444 5666677           888999999888765


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhH
Q 013010          282 GFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSY  361 (451)
Q Consensus       282 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~  361 (451)
                      . +-+...|+.+...+.+.|++++|...+....+.  .|+   ...+...+...+..+++...+.......  +++...+
T Consensus       174 ~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~--~~~~~~~  245 (334)
T d1dcea1         174 N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR--AEPLFRC  245 (334)
T ss_dssp             T-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC--CCCSSSC
T ss_pred             C-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC--cchhhHH
Confidence            4 346778888889999999988876655443332  111   1223344566677788888888887765  5666677


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Q 013010          362 TPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDG  423 (451)
Q Consensus       362 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g  423 (451)
                      ..+...+...|+.++|.+.+.+..+... -+...+..+..++...|+.++|.+.+++.++..
T Consensus       246 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld  306 (334)
T d1dcea1         246 ELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  306 (334)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            7788888889999999999988775431 245678888999999999999999999998643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.31  E-value=1.5e-05  Score=70.17  Aligned_cols=203  Identities=9%  Similarity=-0.021  Sum_probs=134.5

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcC---CCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC----C-CCCCHHH
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRG---NGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQF----R-CRPDVYA  206 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~p~~~~  206 (451)
                      |......|...|++++|.+.|.+..+..   ..+.....+|..+..+|.+.|++++|.+.|+...+.    | ......+
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  119 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence            4445667888999999999998876531   122223567899999999999999999999877552    1 1112455


Q ss_pred             HHHHHHHHHh-cCChHHHHHHHHHhhh----CCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc
Q 013010          207 YNVVINALCR-VGNFNKARFLLEQMEL----PGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK  281 (451)
Q Consensus       207 ~~~li~~~~~-~g~~~~a~~~~~~m~~----~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~  281 (451)
                      +..+...|-. .|++++|...+.+..+    .+.. +--..+|..+...|...|           ++++|...|++....
T Consensus       120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~-~~~~~~~~~la~~~~~~g-----------~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV-ALSNKCFIKCADLKALDG-----------QYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHT
T ss_pred             HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch-hhhhhHHHHHHHHHHHcC-----------hHHHHHHHHHHHHHh
Confidence            6666666744 6999999999988753    2211 012456788899999999           999999999988764


Q ss_pred             CCCCCH------hhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 013010          282 GFVPDV------VAYNCLIDGCCKTYRIERALELFDDMNKKGCI-PN---RVTYNSFIRYYSV--VNEIDKAIEMMRKMQ  349 (451)
Q Consensus       282 ~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~---~~t~~~li~~~~~--~g~~~~A~~~~~~m~  349 (451)
                      ......      ..+...+..+...|+++.|.+.++...+.... ++   ......++.+|-.  .+.+++|+..|+++.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             CccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            322111      12334444566788999999999888765311 11   2334556666554  234677777765443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.25  E-value=4.4e-05  Score=67.03  Aligned_cols=200  Identities=12%  Similarity=-0.030  Sum_probs=129.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHhhhC----CCCCCCCHHHH
Q 013010          174 CLIKVLGEEGLVNEALATFYRMKQF----RCRP-DVYAYNVVINALCRVGNFNKARFLLEQMELP----GFRCPPDVYTY  244 (451)
Q Consensus       174 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~p~~~~~  244 (451)
                      .....|...|++++|.+.|.+..+.    +-++ -..+|+.+..+|.+.|++++|.+.+++....    |.. .....++
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~~~  120 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF-RRGANFK  120 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccc-hhHHHHH
Confidence            3455688899999999999888652    1112 2467889999999999999999999876442    210 1224556


Q ss_pred             HHHHHHHHh-cCCchhhhHHHHHHHHHHHHHHHHHHh----cCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 013010          245 TILISSYCK-YGMQTGCRKAIRRRIWEANHLFRLMLF----KGFVP-DVVAYNCLIDGCCKTYRIERALELFDDMNKKGC  318 (451)
Q Consensus       245 ~~li~~~~~-~g~~~~~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  318 (451)
                      ..+...|.. .|           ++++|.+.+.+..+    .+-.+ -..++..+...+...|++++|.+.|++......
T Consensus       121 ~~l~~~~~~~~~-----------~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~  189 (290)
T d1qqea_         121 FELGEILENDLH-----------DYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM  189 (290)
T ss_dssp             HHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhHhhHHH-----------HHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCc
Confidence            666666644 57           66777777765542    22122 134577888899999999999999999776521


Q ss_pred             CC-----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHH--cCCHHHHHHHHHHHH
Q 013010          319 IP-----NR-VTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS---SSYTPIIHALCE--AGRVLEARDFLAELV  385 (451)
Q Consensus       319 ~p-----~~-~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~---~~~~~li~~~~~--~g~~~~A~~l~~~m~  385 (451)
                      ..     .. ..+...+..+...|+++.|...+++..+.....++.   .....++.++..  .+.+++|+..|+.+.
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             cchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            11     11 223444556677899999999999988765322332   234555555544  234777777775543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5e-05  Score=62.19  Aligned_cols=126  Identities=10%  Similarity=-0.089  Sum_probs=86.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcC
Q 013010          176 IKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYG  255 (451)
Q Consensus       176 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g  255 (451)
                      ...+...|++++|++.|.++.    +|+..+|..+..+|...|++++|++.|++..+..   |-+...|..+..+|.+.|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld---p~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD---KHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---hhhhhhHHHHHHHHHhhc
Confidence            334566788888888877643    4667777778888888888888888888877765   346777778888888888


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHHhcC------------CC--CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 013010          256 MQTGCRKAIRRRIWEANHLFRLMLFKG------------FV--PD-VVAYNCLIDGCCKTYRIERALELFDDMNKKGCI  319 (451)
Q Consensus       256 ~~~~~~~~~~~~~~~a~~~~~~m~~~~------------~~--~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  319 (451)
                                 ++++|...|++.....            ..  ++ ..++..+..++.+.|++++|.+.+....+....
T Consensus        85 -----------~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          85 -----------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             -----------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             -----------cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence                       6677777766654321            10  11 234445666778888888888888877765433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.12  E-value=0.0019  Score=55.11  Aligned_cols=94  Identities=11%  Similarity=-0.006  Sum_probs=53.9

Q ss_pred             HhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010          133 MTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGE----EGLVNEALATFYRMKQFRCRPDVYAYN  208 (451)
Q Consensus       133 ~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~  208 (451)
                      ..+..|...+-+.+++++|.+.|++..+.|     +...+..|-..|..    ..+...|...+....+.+   +.....
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK-----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            345556666666777777777777776665     33344455555554    456677777776666644   333333


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHhhhCC
Q 013010          209 VVINALCR----VGNFNKARFLLEQMELPG  234 (451)
Q Consensus       209 ~li~~~~~----~g~~~~a~~~~~~m~~~g  234 (451)
                      .+...+..    ..+.+.|...++.....|
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhh
Confidence            33333332    345566666666666655

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=9.1e-05  Score=55.05  Aligned_cols=93  Identities=11%  Similarity=-0.005  Sum_probs=76.5

Q ss_pred             HHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc
Q 013010          138 MGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV  217 (451)
Q Consensus       138 ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  217 (451)
                      -...+.+.|++++|...|....+...   .+...|..+..+|...|++++|+..+....+.+ +.+...|..+..++...
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p---~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCC---cchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence            45667788999999999998888763   266778888888999999999999999888754 45778888888889999


Q ss_pred             CChHHHHHHHHHhhhCC
Q 013010          218 GNFNKARFLLEQMELPG  234 (451)
Q Consensus       218 g~~~~a~~~~~~m~~~g  234 (451)
                      |++++|+..|++..+..
T Consensus        85 ~~~~~A~~~~~~a~~~~  101 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHE  101 (117)
T ss_dssp             TCHHHHHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHHHhC
Confidence            99999999999888764

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=0.00021  Score=58.26  Aligned_cols=134  Identities=14%  Similarity=0.006  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 013010          267 RIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMR  346 (451)
Q Consensus       267 ~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~  346 (451)
                      +++.|++.|.++    ..|+..+|..+-.+|...|++++|.+.|++..+.. +-+...|..+-.+|.+.|++++|.+.|+
T Consensus        20 d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~   94 (192)
T d1hh8a_          20 DWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLK   94 (192)
T ss_dssp             CHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHH
Confidence            888999888754    35677888889999999999999999999988764 2267888889999999999999999999


Q ss_pred             HHHhcCCCCC--------------ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          347 KMQNLNHGVP--------------TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNA  405 (451)
Q Consensus       347 ~m~~~~~~~p--------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~  405 (451)
                      +........+              ...++..+-.++.+.|++++|.+.+....+....+........+..+.+
T Consensus        95 kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~  167 (192)
T d1hh8a_          95 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK  167 (192)
T ss_dssp             HHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred             HHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence            8765321111              0234556667788999999999999888876555544444444444433

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=7.3e-05  Score=59.00  Aligned_cols=108  Identities=11%  Similarity=-0.001  Sum_probs=87.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 013010          136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALC  215 (451)
Q Consensus       136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  215 (451)
                      ......|.+.|++++|...|++..+.+.   .+...|..+..+|...|++++|...|+...+.. +-+..+|..+..+|.
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccch---hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHH
Confidence            3355677899999999999999999863   377789999999999999999999999998854 346689999999999


Q ss_pred             hcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHH
Q 013010          216 RVGNFNKARFLLEQMELPGFRCPPDVYTYTILISS  250 (451)
Q Consensus       216 ~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~  250 (451)
                      ..|++++|...+++.....   |-+...+..+..+
T Consensus        90 ~~g~~~eA~~~~~~a~~~~---p~~~~~~~~l~~~  121 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVK---PHDKDAKMKYQEC  121 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---TTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcC---CCCHHHHHHHHHH
Confidence            9999999999999998765   2244444444333

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=7.2e-05  Score=55.65  Aligned_cols=96  Identities=21%  Similarity=0.125  Sum_probs=81.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 013010          294 IDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGR  373 (451)
Q Consensus       294 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~  373 (451)
                      -..+.+.|++++|...|++..+.. +-+...|..+-.+|...|++++|+..+....+.+  +.+...|..+..++...|+
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc--cchhhHHHHHHHHHHHccC
Confidence            456788899999999999988763 3367889999999999999999999999999877  6788889999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCCHH
Q 013010          374 VLEARDFLAELVDGGSVPREY  394 (451)
Q Consensus       374 ~~~A~~l~~~m~~~g~~p~~~  394 (451)
                      +++|...|++.++.  .|+..
T Consensus        87 ~~~A~~~~~~a~~~--~p~~~  105 (117)
T d1elwa_          87 FEEAKRTYEEGLKH--EANNP  105 (117)
T ss_dssp             HHHHHHHHHHHHTT--CTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCCH
Confidence            99999999998864  45533

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=3.6e-05  Score=63.20  Aligned_cols=99  Identities=14%  Similarity=-0.006  Sum_probs=86.8

Q ss_pred             CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHH
Q 013010          129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP-DVYAY  207 (451)
Q Consensus       129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~  207 (451)
                      .|+...+......|.+.|++++|...|.+......   .+...|+.+..+|.+.|++++|+..|+...+.  .| +..+|
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p---~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~   75 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAH   75 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHH
Confidence            36777788889999999999999999999988763   36778999999999999999999999999874  45 57889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhh
Q 013010          208 NVVINALCRVGNFNKARFLLEQMEL  232 (451)
Q Consensus       208 ~~li~~~~~~g~~~~a~~~~~~m~~  232 (451)
                      ..+..+|.+.|++++|...|++...
T Consensus        76 ~~lg~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          76 FFLGQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999999998764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=7.4e-05  Score=61.23  Aligned_cols=98  Identities=12%  Similarity=0.016  Sum_probs=58.6

Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHH
Q 013010          285 PDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPI  364 (451)
Q Consensus       285 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~l  364 (451)
                      |+...+...-..|.+.|++++|...|.+..+.. +-+...|..+-.+|.+.|++++|+..|++..+..  +-+..+|..+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--p~~~~a~~~l   78 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL   78 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--CCcHHHHHHH
Confidence            344444445556666666666666666655542 2245566666666666666666666666666543  2345566666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 013010          365 IHALCEAGRVLEARDFLAELV  385 (451)
Q Consensus       365 i~~~~~~g~~~~A~~l~~~m~  385 (451)
                      ..+|.+.|++++|...|++..
T Consensus        79 g~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            666666666666666666554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=0.00026  Score=55.65  Aligned_cols=90  Identities=13%  Similarity=0.081  Sum_probs=54.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCH
Q 013010          295 DGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRV  374 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~  374 (451)
                      +.|.+.|++++|...|++..+.. +-+...|..+-..|...|++++|+..|++..+..  +-+...|..+..+|...|++
T Consensus        18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~--p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc--ccchHHHHHHHHHHHHcCCH
Confidence            34556666666666666665542 1245556666666666666666666666666554  34445666666666666666


Q ss_pred             HHHHHHHHHHHhC
Q 013010          375 LEARDFLAELVDG  387 (451)
Q Consensus       375 ~~A~~l~~~m~~~  387 (451)
                      ++|.+.+++....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            6666666666553

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=6.7e-05  Score=56.25  Aligned_cols=97  Identities=18%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCC-H
Q 013010          209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPD-V  287 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~  287 (451)
                      .+++.+...+++++|++.|+.....+   |.+..++..+..++.+.+...        ++++|..+|++.......|+ .
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~---p~~~~~~~n~a~~L~~s~~~~--------d~~~Ai~~l~~~l~~~~~~~~~   72 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG---SVSKSTQFEYAWCLVRTRYND--------DIRKGIVLLEELLPKGSKEEQR   72 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS---CCCHHHHHHHHHHHTTSSSHH--------HHHHHHHHHHHHTTTSCHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC---CCCHHHHHHHHHHHHHhcchH--------HHHHHHHHHHHHHhccCCchHH
Confidence            34445555555555555555555443   234455555555554443222        44445555555544322222 1


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 013010          288 VAYNCLIDGCCKTYRIERALELFDDMNKK  316 (451)
Q Consensus       288 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  316 (451)
                      .++..+..+|.+.|++++|.+.|+.+.+.
T Consensus        73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          73 DYVFYLAVGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            23444455555555555555555555543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=9.1e-05  Score=55.49  Aligned_cols=96  Identities=7%  Similarity=-0.006  Sum_probs=71.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCC-HHHHHHHH
Q 013010          136 KEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGL---VNEALATFYRMKQFRCRPD-VYAYNVVI  211 (451)
Q Consensus       136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~li  211 (451)
                      ..+++.+...+++++|.+.|+.....+.   .+..++..+..++.+.++   +++|+.+|+++...+..|+ ..+|..+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p---~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg   79 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGS---VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSC---CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHH
Confidence            4567777788888999999988888763   266677778888876544   4568888888877543333 23677778


Q ss_pred             HHHHhcCChHHHHHHHHHhhhCC
Q 013010          212 NALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       212 ~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      .+|.+.|++++|.+.|+++.+..
T Consensus        80 ~~y~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          80 VGNYRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhC
Confidence            88888999999999998888754

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.77  E-value=0.00013  Score=53.76  Aligned_cols=90  Identities=12%  Similarity=0.032  Sum_probs=72.6

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 013010          137 EMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR  216 (451)
Q Consensus       137 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  216 (451)
                      .+...+.+.|++++|...|++..+....   +..+|..+..++.+.|++++|+..|+...+.. +-+..+|..+...|..
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~---~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE---REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc---cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence            3566677789999999999988887532   66788888888989999999999998888743 3357888888888889


Q ss_pred             cCChHHHHHHHHHh
Q 013010          217 VGNFNKARFLLEQM  230 (451)
Q Consensus       217 ~g~~~~a~~~~~~m  230 (451)
                      .|++++|.+.+++.
T Consensus        97 ~g~~~~A~~~l~~~  110 (112)
T d1hxia_          97 EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            99999998888875

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.72  E-value=0.00019  Score=52.72  Aligned_cols=89  Identities=12%  Similarity=0.010  Sum_probs=72.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 013010          293 LIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEA  371 (451)
Q Consensus       293 li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~  371 (451)
                      +...+.+.|++++|...|++..+..  | +..+|..+-.+|.+.|++++|+..+++..+..  +-+...|..+...|...
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc--cccccchHHHHHHHHHC
Confidence            4456778888999999998887763  4 57888888888888899999999998888876  56677888888888888


Q ss_pred             CCHHHHHHHHHHHH
Q 013010          372 GRVLEARDFLAELV  385 (451)
Q Consensus       372 g~~~~A~~l~~~m~  385 (451)
                      |++++|.+.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999988887753

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.56  E-value=0.02  Score=50.22  Aligned_cols=251  Identities=10%  Similarity=0.034  Sum_probs=152.0

Q ss_pred             hcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHH
Q 013010          109 TLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEA  188 (451)
Q Consensus       109 ~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  188 (451)
                      .+.++.|..+|..+.          .|..++..+.+.++++.|.+++...   +     +..+|..+...+.+......|
T Consensus        27 ~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~---~-----~~~~~k~~~~~l~~~~e~~la   88 (336)
T d1b89a_          27 EKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA---N-----STRTWKEVCFACVDGKEFRLA   88 (336)
T ss_dssp             --CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH---T-----CHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc---C-----CHHHHHHHHHHHHhCcHHHHH
Confidence            344566777776543          3667888888889999888877543   2     556788888888887776554


Q ss_pred             HHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 013010          189 LATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRI  268 (451)
Q Consensus       189 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~  268 (451)
                           .+.......+......++..|-..|.+++...+++......   +++...++-++..|++.+           . 
T Consensus        89 -----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~---~~~~~~~~~L~~lyak~~-----------~-  148 (336)
T d1b89a_          89 -----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE---RAHMGMFTELAILYSKFK-----------P-  148 (336)
T ss_dssp             -----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST---TCCHHHHHHHHHHHHTTC-----------H-
T ss_pred             -----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC---ccchHHHHHHHHHHHHhC-----------h-
Confidence                 22233344566667789999999999999999999876432   367888999999999876           1 


Q ss_pred             HHHHHHHHHHHhcCCCCC----------HhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 013010          269 WEANHLFRLMLFKGFVPD----------VVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEI  338 (451)
Q Consensus       269 ~~a~~~~~~m~~~~~~~~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~  338 (451)
                      ++   +.+.+...+-.-|          ...|.-++..|.+.|.+++|..++-+   .  .++..-...++..+.+..+.
T Consensus       149 ~k---l~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~N~  220 (336)
T d1b89a_         149 QK---MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVANV  220 (336)
T ss_dssp             HH---HHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCSST
T ss_pred             HH---HHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccCCh
Confidence            12   2222222111111          11134455555555555555443321   1  22333344456666777777


Q ss_pred             HHHHHHHHHHHhcCCCCCC-----------hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 013010          339 DKAIEMMRKMQNLNHGVPT-----------SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAE  407 (451)
Q Consensus       339 ~~A~~~~~~m~~~~~~~p~-----------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g  407 (451)
                      +...++..-..+..   |+           ...-..++.-+.+.+++.-...++....+.|   +....++|.+.|...+
T Consensus       221 e~~~~~i~~yL~~~---p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~  294 (336)
T d1b89a_         221 ELYYRAIQFYLEFK---PLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEE  294 (336)
T ss_dssp             HHHHHHHHHHHHHC---GGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcC---HHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcc
Confidence            66666666554422   21           1112344445555555555556665555544   3468889999999999


Q ss_pred             CCch
Q 013010          408 EPSL  411 (451)
Q Consensus       408 ~~~~  411 (451)
                      +.+.
T Consensus       295 d~~~  298 (336)
T d1b89a_         295 DYQA  298 (336)
T ss_dssp             CHHH
T ss_pred             hhHH
Confidence            8653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.47  E-value=0.0025  Score=50.90  Aligned_cols=100  Identities=13%  Similarity=0.063  Sum_probs=77.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhC--CCC-C------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 013010          296 GCCKTYRIERALELFDDMNKK--GCI-P------------------NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHG  354 (451)
Q Consensus       296 ~~~~~g~~~~a~~~~~~m~~~--g~~-p------------------~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  354 (451)
                      .....|++++|.+.|......  |-. +                  ....+..+...+...|++++|+..++.+.+..  
T Consensus        20 ~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~--   97 (179)
T d2ff4a2          20 HAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH--   97 (179)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhC--
Confidence            445566666666666665542  110 0                  12456778889999999999999999999987  


Q ss_pred             CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH-----hCCCCCCHHHHH
Q 013010          355 VPTSSSYTPIIHALCEAGRVLEARDFLAELV-----DGGSVPREYTYK  397 (451)
Q Consensus       355 ~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-----~~g~~p~~~t~~  397 (451)
                      +-+...|..++.+|.+.|+.++|++.|+++.     +.|+.|+..+-.
T Consensus        98 P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~  145 (179)
T d2ff4a2          98 PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  145 (179)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHH
Confidence            6788999999999999999999999999874     469999976533

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=0.0035  Score=49.46  Aligned_cols=113  Identities=16%  Similarity=0.038  Sum_probs=80.5

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCCC------------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGEL------------VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP  202 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  202 (451)
                      +......+.+.|++++|...|.+.........            ....+|+.+..+|.+.|++++|+..++...+.. +-
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~   94 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN   94 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-cc
Confidence            44455566677777777777776655421100            112457778888999999999999999998854 33


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      ++.+|..+..+|...|++++|...|++..+..   |-+..+...+-...
T Consensus        95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~---P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLY---PNNKAAKTQLAVCQ  140 (170)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSCHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC---CCCHHHHHHHHHHH
Confidence            78889999999999999999999999998765   22555444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=0.002  Score=51.02  Aligned_cols=107  Identities=11%  Similarity=-0.029  Sum_probs=79.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCC-----CCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC
Q 013010          292 CLIDGCCKTYRIERALELFDDMNKKG-----CIP---------NRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT  357 (451)
Q Consensus       292 ~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p---------~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~  357 (451)
                      ..-..+.+.|++++|...|.+..+.-     ...         -..+|+.+..+|.+.|++++|+..++......  +-+
T Consensus        18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--p~~   95 (170)
T d1p5qa1          18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD--SNN   95 (170)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc--ccc
Confidence            34456778888888888888765431     010         12456777888999999999999999999876  568


Q ss_pred             hhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 013010          358 SSSYTPIIHALCEAGRVLEARDFLAELVDGGSVP-REYTYKLVCDA  402 (451)
Q Consensus       358 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~  402 (451)
                      +..|..+..+|...|++++|...|+...+.  .| +......+-.+
T Consensus        96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          96 EKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            889999999999999999999999999874  35 34444444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.46  E-value=0.0032  Score=48.70  Aligned_cols=91  Identities=14%  Similarity=0.058  Sum_probs=71.5

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCC----CCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChh
Q 013010          295 DGCCKTYRIERALELFDDMNKKG----CIPN-----------RVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSS  359 (451)
Q Consensus       295 ~~~~~~g~~~~a~~~~~~m~~~g----~~p~-----------~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~  359 (451)
                      ..+.+.|++++|...|.+....-    ..++           ..+|+.+..+|.+.|++++|++.++...+..  +.+..
T Consensus        25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~--p~~~k  102 (153)
T d2fbna1          25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--KNNVK  102 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc--chhhh
Confidence            45678889999988888876431    1111           2456677888889999999999999988876  56788


Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 013010          360 SYTPIIHALCEAGRVLEARDFLAELVDG  387 (451)
Q Consensus       360 ~~~~li~~~~~~g~~~~A~~l~~~m~~~  387 (451)
                      +|..+..++...|++++|...|....+.
T Consensus       103 a~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1         103 ALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999888874

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00086  Score=50.36  Aligned_cols=96  Identities=13%  Similarity=0.074  Sum_probs=74.3

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CC-----HHHHH
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR-PD-----VYAYN  208 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~-----~~~~~  208 (451)
                      +..+...+.+.|++++|...|.+..+.+..   +..+|..+..+|.+.|++++|+..++++.+..-. +.     ..+|.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~---~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPT---NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc---cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            445777888899999999999998887632   6678888999999999999999999988762100 11     24667


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhC
Q 013010          209 VVINALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      .+...+...+++++|...|......
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            7777888888999999999877654

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.44  E-value=0.025  Score=47.65  Aligned_cols=232  Identities=11%  Similarity=-0.027  Sum_probs=161.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHhhhCCCCCCCCHHHHH
Q 013010          170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCR----VGNFNKARFLLEQMELPGFRCPPDVYTYT  245 (451)
Q Consensus       170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~p~~~~~~  245 (451)
                      ..+..|-..+...+++++|++.|++..+.|   +...+-.|-..|..    ..+...|..++......+     +.....
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~-----~~~a~~   74 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-----YSNGCH   74 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc-----ccchhh
Confidence            456677777888999999999999999876   55666666666765    567889999999988876     334445


Q ss_pred             HHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCC
Q 013010          246 ILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCC----KTYRIERALELFDDMNKKGCIPN  321 (451)
Q Consensus       246 ~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~  321 (451)
                      .+...+......+.       ..+.|...++...+.|..   .....+...+.    .......+...+......+   +
T Consensus        75 ~l~~~~~~~~~~~~-------~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~  141 (265)
T d1ouva_          75 LLGNLYYSGQGVSQ-------NTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D  141 (265)
T ss_dssp             HHHHHHHHTSSSCC-------CHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             ccccccccccccch-------hhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---c
Confidence            55555543222211       677888888888776632   22233333333    2445677777777766653   6


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 013010          322 RVTYNSFIRYYSV----VNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGGSVPRE  393 (451)
Q Consensus       322 ~~t~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~  393 (451)
                      ...+..|...|..    ..+...+...++...+.+    +......+-..|..    ..++++|..+|....+.|   +.
T Consensus       142 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g----~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~  214 (265)
T d1ouva_         142 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NG  214 (265)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             cchhhhhhhhhccCCCcccccccchhhhhcccccc----ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CH
Confidence            6777777777775    467788888888887755    34555555445554    568999999999999887   45


Q ss_pred             HHHHHHHHHHHh----cCCCchHHHHHHHHHHhchHHHHH
Q 013010          394 YTYKLVCDALNA----AEEPSLLDDGLRKRIRDGIEYRFR  429 (451)
Q Consensus       394 ~t~~~li~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~  429 (451)
                      ..+..|-..|..    ..+.+.|.+.+++..+.|-.+-..
T Consensus       215 ~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~  254 (265)
T d1ouva_         215 GGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACD  254 (265)
T ss_dssp             HHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHH
Confidence            566666666664    347889999999999999877533

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0021  Score=48.06  Aligned_cols=95  Identities=15%  Similarity=0.168  Sum_probs=70.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCC-----hhhHHHHH
Q 013010          291 NCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPT-----SSSYTPII  365 (451)
Q Consensus       291 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~-----~~~~~~li  365 (451)
                      ..+-..+.+.|++++|.+.|.+..+.+ +.+...|..+-.+|.+.|++++|++.++++.+.....+.     ..+|..+-
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            345567888899999999999888763 236788888889999999999999999887764321111     13555666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHh
Q 013010          366 HALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       366 ~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      ..+...+++++|.+.|..-..
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            677777888888888877665

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.28  E-value=0.0043  Score=47.97  Aligned_cols=99  Identities=15%  Similarity=0.017  Sum_probs=75.5

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCCCC--C-----------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRGNGE--L-----------VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR  201 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~--~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  201 (451)
                      +..-...+.+.|++++|...|.+....-...  .           ....+|+.+..+|.+.|++++|++.++...+.+ +
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p   98 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K   98 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence            3334455667788888888887766532111  0           012467778888999999999999999998854 4


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010          202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       202 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      .+..+|..+..++...|++++|...|++..+..
T Consensus        99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            478999999999999999999999999988765

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.25  E-value=0.008  Score=47.16  Aligned_cols=117  Identities=11%  Similarity=-0.043  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHccCChhHHHHHHHHHHHcC-CCCC-----------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 013010          134 TCKEMGIVFARGNNVKGLWDFLKDMSRRG-NGEL-----------VTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCR  201 (451)
Q Consensus       134 ~~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  201 (451)
                      .+......+.+.|++++|...|......- ..+.           .....|+.+..+|.+.|++++|+..++...+.. +
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p   95 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-S   95 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-c
Confidence            34556677778888888888887655421 0000           112346667788899999999999999998854 4


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhc
Q 013010          202 PDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKY  254 (451)
Q Consensus       202 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~  254 (451)
                      .+..+|..+..+|...|++++|...|++.....   |.+..+...+-....+.
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~---P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN---PQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---TTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHH
Confidence            578899999999999999999999999998765   34555555444443333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.25  E-value=0.0032  Score=50.22  Aligned_cols=71  Identities=11%  Similarity=-0.016  Sum_probs=59.5

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhh-----CCCCCCCCHHH
Q 013010          170 SSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMEL-----PGFRCPPDVYT  243 (451)
Q Consensus       170 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~p~~~~  243 (451)
                      ..+..+...+.+.|++++|+..++.+.+.. +-+...|..++.+|.+.|+.++|++.|+++..     .|+.  |+..+
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~--P~~~l  143 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGID--PGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCC--CCHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC--cCHHH
Confidence            457778889999999999999999998854 45789999999999999999999999998743     5765  77654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.19  E-value=0.0046  Score=48.66  Aligned_cols=113  Identities=13%  Similarity=0.028  Sum_probs=82.9

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHHcC------------CC-CCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 013010          136 KEMGIVFARGNNVKGLWDFLKDMSRRG------------NG-ELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRP  202 (451)
Q Consensus       136 ~~ll~~~~~~g~~~~a~~~~~~m~~~~------------~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  202 (451)
                      ......+.+.|++++|.+.|.+..+..            .. .+.....|..+..++.+.|++++|+..++...+.. +-
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~  109 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PS  109 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hh
Confidence            345556677888888888876654320            00 01244567778889999999999999999999864 34


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHH
Q 013010          203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYC  252 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~  252 (451)
                      +..+|..+..+|...|++++|...|+...+..   |.+..+...+..+..
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~---p~n~~~~~~l~~~~~  156 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA---PEDKAIQAELLKVKQ  156 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHH
Confidence            68889999999999999999999999998865   245555555554443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.15  E-value=0.0017  Score=49.89  Aligned_cols=124  Identities=15%  Similarity=0.077  Sum_probs=75.2

Q ss_pred             cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhc----------CChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHH
Q 013010          182 EGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRV----------GNFNKARFLLEQMELPGFRCPPDVYTYTILISSY  251 (451)
Q Consensus       182 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~  251 (451)
                      .+.+++|...|+...+.. +-+..++..+..+|...          +.+++|...|++..+..   |.+..+|..+..+|
T Consensus        10 ~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~---P~~~~a~~~lG~~y   85 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID---PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc---chhhHHHhhHHHHH
Confidence            344566666666665532 22444555555444432          34577888888888765   45778888888888


Q ss_pred             HhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 013010          252 CKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKG  317 (451)
Q Consensus       252 ~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  317 (451)
                      ...|..........+.+++|.+.|+...+.  .|+...|..-+..+      .+|.+++.+..+.|
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~  143 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHh
Confidence            877643333333334677888888877764  56666665544443      35556666665554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.11  E-value=0.074  Score=46.45  Aligned_cols=248  Identities=14%  Similarity=0.007  Sum_probs=142.4

Q ss_pred             CCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 013010          129 FHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPDVYAYN  208 (451)
Q Consensus       129 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  208 (451)
                      .||...-..+...|-+.|.++.|..++..+.           -|..++..+.+.+++..|.+++...      -+..+|.
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~-----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k   73 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS-----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK   73 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTT-----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC-----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHH
Confidence            3455556667888889999999999997542           2778889999999999998887654      2677999


Q ss_pred             HHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHh
Q 013010          209 VVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVV  288 (451)
Q Consensus       209 ~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  288 (451)
                      .+..+|.+......|     .+.....  ..+......++..|-..|           .+++...+++..... -..+..
T Consensus        74 ~~~~~l~~~~e~~la-----~i~~~~~--~~~~d~l~~~v~~ye~~~-----------~~e~Li~~Le~~~~~-~~~~~~  134 (336)
T d1b89a_          74 EVCFACVDGKEFRLA-----QMCGLHI--VVHADELEELINYYQDRG-----------YFEELITMLEAALGL-ERAHMG  134 (336)
T ss_dssp             HHHHHHHHTTCHHHH-----HHTTTTT--TTCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHTTS-TTCCHH
T ss_pred             HHHHHHHhCcHHHHH-----HHHHHHh--hcCHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHcC-CccchH
Confidence            999999888766443     2222222  245566678999999999           888888888876532 255777


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCh
Q 013010          289 AYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRV----------TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTS  358 (451)
Q Consensus       289 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----------t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~  358 (451)
                      .++-++..|++.+. ++..+.++..   .-..|..          .|.-++..|.+.|+++.|..+.-+   +   .++.
T Consensus       135 ~~~~L~~lyak~~~-~kl~e~l~~~---s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~---~~~~  204 (336)
T d1b89a_         135 MFTELAILYSKFKP-QKMREHLELF---WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H---PTDA  204 (336)
T ss_dssp             HHHHHHHHHHTTCH-HHHHHHHHHH---STTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S---TTTT
T ss_pred             HHHHHHHHHHHhCh-HHHHHHHHhc---cccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c---chhh
Confidence            88999999998753 4444433332   1111211          123344455555555555444321   1   3444


Q ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-----------HHHHHHHHHHhcCCCchHHHHHHHHHHhch
Q 013010          359 SSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREY-----------TYKLVCDALNAAEEPSLLDDGLRKRIRDGI  424 (451)
Q Consensus       359 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-----------t~~~li~~~~~~g~~~~a~~~~~~~~~~g~  424 (451)
                      .-....+..+.+.++.+...++.....+.  .|+..           .-..+++-+.+.++...+...++.....|.
T Consensus       205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n~  279 (336)
T d1b89a_         205 WKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNN  279 (336)
T ss_dssp             CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcCh
Confidence            45556666677777776666665555442  23211           112344555566666666555555444443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00037  Score=65.99  Aligned_cols=133  Identities=8%  Similarity=-0.130  Sum_probs=64.5

Q ss_pred             CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhH
Q 013010          183 GLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRK  262 (451)
Q Consensus       183 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~  262 (451)
                      +.++.|+..+....+.. .++...+..+...+.+.|+.+.|...+.......    | ..++..+...+...|       
T Consensus       100 ~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~----~-~~~~~~LG~l~~~~~-------  166 (497)
T d1ya0a1         100 GFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI----C-QHCLVHLGDIARYRN-------  166 (497)
T ss_dssp             HHHHHHHHHHTC--------------------------------CCHHHHHH----H-HHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC----H-HHHHHHHHHHHHHcc-------
Confidence            34444444443332211 2345556666667777777777777666554321    1 245666677777777       


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 013010          263 AIRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV  334 (451)
Q Consensus       263 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~  334 (451)
                          ++++|...|.+..+.. +-+...|+.+...+...|+..+|...|.+..... .|-..++..|...|.+
T Consensus       167 ----~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         167 ----QTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             ----CHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             ----cHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence                7778888887776542 2344678888888888888888888887776653 4566777777666544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.08  E-value=0.0075  Score=47.33  Aligned_cols=61  Identities=5%  Similarity=-0.074  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 013010          324 TYNSFIRYYSVVNEIDKAIEMMRKMQNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVD  386 (451)
Q Consensus       324 t~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  386 (451)
                      .|..+-.+|.+.|++++|+..+++..+..  +-+...|..+..+|...|++++|.+.|+..++
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~--p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~  139 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID--PSNTKALYRRAQGWQGLKEYDQALADLKKAQE  139 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh--hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHH
Confidence            34444444555555555555555554433  33444455555555555555555555555444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0013  Score=62.03  Aligned_cols=266  Identities=11%  Similarity=-0.027  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHhhcCCCCCC-HHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHH
Q 013010          113 NKATEFYHWVERFFDFFHN-EMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALAT  191 (451)
Q Consensus       113 ~~A~~~f~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  191 (451)
                      -+|.+.|+...+   +.|+ ...+..+..++...+++++|   ++++...+..   ....++..-..+  ...+..+.+.
T Consensus         3 ~eA~q~~~qA~~---l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~---~a~~~~~e~~Lw--~~~y~~~ie~   71 (497)
T d1ya0a1           3 LQSAQYLRQAEV---LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE---YALDKKVEQDLW--NHAFKNQITT   71 (497)
T ss_dssp             HHHHHHHHHHHH---HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH---HHHHHTHHHHHH--HHHTHHHHHH
T ss_pred             HHHHHHHHHHHH---cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh---hHHHHhHHHHHH--HHHHHHHHHH
Confidence            378899998874   3454 34566677788888888776   6666554311   111222211111  1123556777


Q ss_pred             HHHHhhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHH
Q 013010          192 FYRMKQFRCRPDVYAYNVVINAL--CRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIW  269 (451)
Q Consensus       192 ~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~  269 (451)
                      ++...+..-.++..-....+..+  ...+.++.|+..+.......   +++...+..+...+.+.|           +.+
T Consensus        72 ~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~---~~~~~~~~~lg~~~~~~~-----------~~~  137 (497)
T d1ya0a1          72 LQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD---LPCRVKSSQLGIISNKQT-----------HTS  137 (497)
T ss_dssp             HHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC----------------------------------------
T ss_pred             HHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---hhhHHHHHHhHHHHHhCC-----------CHH
Confidence            77776654334433322222222  23445555555554443332   346667777777888877           777


Q ss_pred             HHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 013010          270 EANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIP-NRVTYNSFIRYYSVVNEIDKAIEMMRKM  348 (451)
Q Consensus       270 ~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~~~~~m  348 (451)
                      +|...+.......   ...++..+-..+...|++++|...|++..+.  .| +..+|+.|-..|...|+..+|...|.+.
T Consensus       138 ~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ra  212 (497)
T d1ya0a1         138 AIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRS  212 (497)
T ss_dssp             -----CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8887776655321   1246677888889999999999999998876  45 5689999999999999999999999999


Q ss_pred             HhcCCCCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCCchHHHHHHHH
Q 013010          349 QNLNHGVPTSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPR----EYTYKLVCDALNAAEEPSLLDDGLRKR  419 (451)
Q Consensus       349 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~a~~~~~~~  419 (451)
                      ....  .|-..++..|...|.+..+..++         ......    ...+..+...+....+.+...+...+.
T Consensus       213 l~~~--~~~~~a~~nL~~~~~~~~~~~~~---------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~  276 (497)
T d1ya0a1         213 IAVK--FPFPAASTNLQKALSKALESRDE---------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL  276 (497)
T ss_dssp             HSSS--BCCHHHHHHHHHHHHHHTTSCCC---------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             HhCC--CCCHHHHHHHHHHHHHhhhhhhh---------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence            8866  68888999988887664432111         011111    123444445555666666665554443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=96.93  E-value=0.013  Score=45.79  Aligned_cols=96  Identities=16%  Similarity=0.032  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhc---CCCCC-----------HhhHHHHHHHHHhcCCHHHHHH
Q 013010          243 TYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFK---GFVPD-----------VVAYNCLIDGCCKTYRIERALE  308 (451)
Q Consensus       243 ~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~---~~~~~-----------~~~~~~li~~~~~~g~~~~a~~  308 (451)
                      .+.-....+.+.|           ++.+|...|.+....   ....+           ...|+.+..+|.+.|++++|+.
T Consensus        17 ~~~e~G~~~~~~~-----------~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~   85 (168)
T d1kt1a1          17 IVKEKGTVYFKGG-----------KYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE   85 (168)
T ss_dssp             HHHHHHHHHHHTT-----------CHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchh
Confidence            4445566778888           777777777665431   11111           1122333334444444444444


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          309 LFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQN  350 (451)
Q Consensus       309 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~  350 (451)
                      .++...+.. +.+..+|..+..+|...|++++|...|.+..+
T Consensus        86 ~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          86 CCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            444444331 12344444444444444444444444444444

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.91  E-value=0.0012  Score=56.49  Aligned_cols=52  Identities=25%  Similarity=0.261  Sum_probs=28.5

Q ss_pred             hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhC
Q 013010          181 EEGLVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELP  233 (451)
Q Consensus       181 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  233 (451)
                      +.|++++|+..|++..+.. +-|...+..+...|+..|++++|.+.|+...+.
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3455555555555555532 234555555555555555555555555555544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=96.82  E-value=0.0012  Score=56.51  Aligned_cols=122  Identities=9%  Similarity=-0.076  Sum_probs=82.3

Q ss_pred             hhcCHHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHccCChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHH
Q 013010          108 VTLGLNKATEFYHWVERFFDFFHNEMTCKEMGIVFARGNNVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNE  187 (451)
Q Consensus       108 ~~~~~~~A~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~  187 (451)
                      ..|++++|+..|+...+.  -|.|...+..+...|+..|++++|.+.++...+....   +...+..+...+...+..++
T Consensus         8 ~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~---~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE---YLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG---GHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHhccccHH
Confidence            457899999999999864  4567889999999999999999999999999887522   34444444444433333333


Q ss_pred             HHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCC
Q 013010          188 ALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPG  234 (451)
Q Consensus       188 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  234 (451)
                      +..-+..-...+-+++...+......+...|+.++|..++++..+..
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~  129 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR  129 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence            22221111111212233444555667888999999999999887653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.82  E-value=0.0055  Score=46.86  Aligned_cols=83  Identities=18%  Similarity=0.045  Sum_probs=58.8

Q ss_pred             HHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcCCCCCHhhHHHH
Q 013010          214 LCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKGFVPDVVAYNCL  293 (451)
Q Consensus       214 ~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  293 (451)
                      |-+.+.+++|...|+...+..   |.+..++..+-.+|...++...+.+.. +.+++|...|++..+.. +-+..+|..+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~---P~~~~~~~~~g~~l~~~~~~~~~~e~~-~~~~~Ai~~~~kAl~l~-P~~~~a~~~l   81 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSN---PLDADNLTRWGGVLLELSQFHSISDAK-QMIQEAITKFEEALLID-PKKDEAVWCI   81 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC---TTCHHHHHHHHHHHHHHHHHSCHHHHH-HHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhC---CcchHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHHHHHhc-chhhHHHhhH
Confidence            445667899999999998875   468888888888888776544433322 26788888888887653 3355677777


Q ss_pred             HHHHHhcC
Q 013010          294 IDGCCKTY  301 (451)
Q Consensus       294 i~~~~~~g  301 (451)
                      -.+|...|
T Consensus        82 G~~y~~~g   89 (145)
T d1zu2a1          82 GNAYTSFA   89 (145)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHcc
Confidence            77776554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.51  E-value=0.015  Score=44.84  Aligned_cols=106  Identities=13%  Similarity=-0.031  Sum_probs=62.0

Q ss_pred             HHHHHH--HHHHHhcCChHHHHHHHHHhhhCCCCCCC----------CHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHH
Q 013010          205 YAYNVV--INALCRVGNFNKARFLLEQMELPGFRCPP----------DVYTYTILISSYCKYGMQTGCRKAIRRRIWEAN  272 (451)
Q Consensus       205 ~~~~~l--i~~~~~~g~~~~a~~~~~~m~~~g~~~~p----------~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~  272 (451)
                      .+|..+  ...+...|++++|+..|++..+..-.. |          ....|+.+..+|.+.|+++.+.+    .+++|+
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~-~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~----~~~~al   82 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALH----SADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhh-hhhhhcccchhHHHHHHHHHHHHHHcCccchhhH----hhhhhh
Confidence            344444  444556677888888777765422110 1          24678899999999994444443    444444


Q ss_pred             HHHHHHHhcCCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 013010          273 HLFRLMLFKGFV--P-DVVAYNCLIDGCCKTYRIERALELFDDMNK  315 (451)
Q Consensus       273 ~~~~~m~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  315 (451)
                      .++.........  + ....++.+-.+|...|++++|.+.|++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            444433221110  0 122456667778888888888888877553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.47  E-value=0.028  Score=43.22  Aligned_cols=100  Identities=11%  Similarity=-0.049  Sum_probs=72.9

Q ss_pred             HhHHHH--HHHHHccCChhHHHHHHHHHHHcCCCCC---------ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhC---
Q 013010          133 MTCKEM--GIVFARGNNVKGLWDFLKDMSRRGNGEL---------VTTSSVTCLIKVLGEEGLVNEALATFYRMKQF---  198 (451)
Q Consensus       133 ~~~~~l--l~~~~~~g~~~~a~~~~~~m~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---  198 (451)
                      .+|..+  ...+.+.|++++|...|++..+.....+         .....|+.+..+|.+.|++++|...+++..+.   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            345555  4456678999999999998876432210         02457888999999999999999999887652   


Q ss_pred             --CCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHhhh
Q 013010          199 --RCRPD-----VYAYNVVINALCRVGNFNKARFLLEQMEL  232 (451)
Q Consensus       199 --g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  232 (451)
                        ...++     ..+|+.+..+|...|++++|...|++..+
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12222     23567788899999999999999988653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.045  Score=37.90  Aligned_cols=63  Identities=14%  Similarity=0.061  Sum_probs=29.1

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHHcCC---CCC-ccHHhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 013010          135 CKEMGIVFARGNNVKGLWDFLKDMSRRGN---GEL-VTTSSVTCLIKVLGEEGLVNEALATFYRMKQ  197 (451)
Q Consensus       135 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  197 (451)
                      +-.+...+.+.|++++|...|++..+...   ... ....+++.|..+|.+.|++++|+..|++..+
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            33455555555555555555555443310   000 1123444455555555555555555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.049  Score=37.73  Aligned_cols=74  Identities=18%  Similarity=0.034  Sum_probs=55.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHH
Q 013010          172 VTCLIKVLGEEGLVNEALATFYRMKQF-----RCRPD-VYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYT  245 (451)
Q Consensus       172 ~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~  245 (451)
                      +-.+-..+.+.|++++|...|++..+.     ...++ ..+++.+..+|.+.|++++|...+++..+..   |-+..+++
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~---P~~~~a~~   84 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD---PEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---TTCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC---cCCHHHHH
Confidence            446777888999999999999887652     11223 5678889999999999999999999988765   23556666


Q ss_pred             HHH
Q 013010          246 ILI  248 (451)
Q Consensus       246 ~li  248 (451)
                      .+-
T Consensus        85 Nl~   87 (95)
T d1tjca_          85 NLK   87 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.13  E-value=0.39  Score=35.18  Aligned_cols=114  Identities=10%  Similarity=0.061  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHH
Q 013010          264 IRRRIWEANHLFRLMLFKGFVPDVVAYNCLIDGCCKTYRIERALELFDDMNKKGCIPNRVTYNSFIRYYSV----VNEID  339 (451)
Q Consensus       264 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~  339 (451)
                      +++++++|.+.|.+..+.|.   ...+..|.  .....+.++|.+.++...+.|   +......|-..|..    ..+.+
T Consensus         5 v~kd~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~   76 (133)
T d1klxa_           5 VKKDLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR   76 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cccCHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhH
Confidence            34589999999999888763   23333332  234567889999999888877   44455555555544    45688


Q ss_pred             HHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCCHHHHHHHHHHHHhCCC
Q 013010          340 KAIEMMRKMQNLNHGVPTSSSYTPIIHALCE----AGRVLEARDFLAELVDGGS  389 (451)
Q Consensus       340 ~A~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~  389 (451)
                      +|.++|++..+.+.    +..+..|-..|..    ..+.++|.++|+...+.|.
T Consensus        77 ~A~~~~~~aa~~g~----~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          77 KAAQYYSKACGLND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHTTC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhccCc----chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            89999998888763    3344445445544    3578888888888777764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.04  E-value=0.41  Score=35.02  Aligned_cols=14  Identities=29%  Similarity=0.394  Sum_probs=8.1

Q ss_pred             CHHHHHHHHHHHhh
Q 013010          111 GLNKATEFYHWVER  124 (451)
Q Consensus       111 ~~~~A~~~f~~~~~  124 (451)
                      +.++|+.+|+...+
T Consensus         8 d~~~A~~~~~kaa~   21 (133)
T d1klxa_           8 DLKKAIQYYVKACE   21 (133)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            45666666666543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.53  E-value=0.52  Score=33.83  Aligned_cols=68  Identities=13%  Similarity=0.019  Sum_probs=57.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHHHHHHHhcC
Q 013010          203 DVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILISSYCKYGMQTGCRKAIRRRIWEANHLFRLMLFKG  282 (451)
Q Consensus       203 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~~~~a~~~~~~m~~~~  282 (451)
                      +...++..++.+..+|+-+...+++.++.+.+   .|+....-.+..+|.+.|           ...++.+++.+.-+.|
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~---~i~~~~llkia~A~kkig-----------~~re~nell~~ACe~G  150 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN---EVSASILVAIANALRRVG-----------DERDATTLLIEACKKG  150 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C---CSCHHHHHHHHHHHHHTT-----------CHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHhc-----------chhhHHHHHHHHHHHh
Confidence            55667888899999999999999999976655   378888899999999999           8889999999998888


Q ss_pred             CC
Q 013010          283 FV  284 (451)
Q Consensus       283 ~~  284 (451)
                      ++
T Consensus       151 ~K  152 (161)
T d1wy6a1         151 EK  152 (161)
T ss_dssp             CH
T ss_pred             HH
Confidence            65

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.74  E-value=0.78  Score=32.90  Aligned_cols=74  Identities=11%  Similarity=0.077  Sum_probs=58.5

Q ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHhchHHHHHHh
Q 013010          357 TSSSYTPIIHALCEAGRVLEARDFLAELVDGGSVPREYTYKLVCDALNAAEEPSLLDDGLRKRIRDGIEYRFRQV  431 (451)
Q Consensus       357 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~  431 (451)
                      +...+...++.+..+|+-+.-.++++++.+. -.|++...-.+..||.+-|...++.+++.+.=++|+......+
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~KeAC~~i  158 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEKEACNAV  158 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHHHHHHHh
Confidence            3456677788888999988888998887764 4677778888899999999999999999999999987765443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.43  E-value=2.8  Score=28.30  Aligned_cols=48  Identities=8%  Similarity=0.188  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 013010          305 RALELFDDMNKKGCIPNRVTYNSFIRYYSVVNEIDKAIEMMRKMQNLN  352 (451)
Q Consensus       305 ~a~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~~~~~m~~~~  352 (451)
                      ++.+-++.+......|++....+-+.+|.+.+++..|.++|+..+.+.
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~   71 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA   71 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            344444444455555555555555555555555555555555555433

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.22  E-value=2.1  Score=28.93  Aligned_cols=63  Identities=17%  Similarity=0.198  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHhhhCCCCCCCCHHHHHHHHH
Q 013010          184 LVNEALATFYRMKQFRCRPDVYAYNVVINALCRVGNFNKARFLLEQMELPGFRCPPDVYTYTILIS  249 (451)
Q Consensus       184 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~p~~~~~~~li~  249 (451)
                      +.-++.+-++.+...++.|++....+.+.+|-+.+++..|.++|+-.+...   .++...|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~---~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA---GPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT---TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh---cCcHHHHHHHHH
Confidence            556777778888888888888888888888888888888888888877653   234445655554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.88  E-value=3.2  Score=29.59  Aligned_cols=62  Identities=10%  Similarity=-0.030  Sum_probs=35.6

Q ss_pred             HHHHHHccC---ChhHHHHHHHHHHHcCCCCCccHHhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 013010          138 MGIVFARGN---NVKGLWDFLKDMSRRGNGELVTTSSVTCLIKVLGEEGLVNEALATFYRMKQFRCRPD  203 (451)
Q Consensus       138 ll~~~~~~g---~~~~a~~~~~~m~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  203 (451)
                      ..-++.++.   +.+++..+++...+.+  |......+..|.-+|.+.|++++|.+.++.+.+  +.|+
T Consensus        41 YAw~Lv~S~~~~d~~~gI~lLe~~~~~~--p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~  105 (124)
T d2pqrb1          41 YAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERN  105 (124)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTT
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCC
Confidence            444444433   4556777777766543  111234455666667777777777777777766  3454