Citrus Sinensis ID: 013159

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------45
MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWYLKFKSDLECLHD
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHccccccccHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHcc
cccccccHcccccccccEcccHccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHHHEHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHccEccccccccHHHcccccccHHHHHHHHHHHccccEcccEEEcccHHHHHHHHHHHHHHcHEEEcccHHHHHHHHHHHcHEEEEccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
melgassrvlsnntllrfspestfrrryqvpvnptslnhhqrrfsnasfqlsnsysireTTYKKVVNMSkvdsrefelssltalspldgrywskvkdlapymseyGLIYFRVLVEIKWLLKlskipevtevpsfsEEAKSYLQGLidgfnmddalevkniervtnHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMlsrthgqpaspttlgKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNahlsaypdvnwpqiTEDFVKSlglsfnpyvtqIETHDYMAKLFYAFVRFNnilidfdrdVWGYISLAYFKQVTkageigsstmphkvnpidfensegnlgkanedlsflsmklpisrwqVRSNLTLLLIFFNFDLWLCLLrqvpwylkfksdleclhd
melgassrvlsnntllrfspestfrrrYQVPvnptslnhhqrrfsnasfqlsnsysireTTYKKVVNMSkvdsrefelssltalspldgrywSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPevtevpsfsEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSrthgqpaspttlgKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWYLKFKsdleclhd
MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWYLKFKSDLECLHD
******************************************************YSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISM*************LGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEI**************************DLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWYLKFKSDLEC***
************NTLLRFSPES*****************************************************FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKA****SSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWYLKFKSDL*****
MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLS*********TTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWYLKFKSDLECLHD
*************TLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSY*********************ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWYLKFKSDLE****
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
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MELGASSRVLSNNTLLRFSPESTFRRRYQVPVNPTSLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLLRQVPWYLKFKSDLECLHD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query448 2.2.26 [Sep-21-2011]
P44797456 Adenylosuccinate lyase OS yes no 0.792 0.778 0.583 1e-122
Q9I0K9456 Adenylosuccinate lyase OS yes no 0.745 0.732 0.611 1e-120
P0AB89456 Adenylosuccinate lyase OS N/A no 0.745 0.732 0.604 1e-120
P0AB90456 Adenylosuccinate lyase OS yes no 0.745 0.732 0.604 1e-120
A5IGB3456 Adenylosuccinate lyase OS yes no 0.741 0.728 0.533 1e-105
Q5ZXD1456 Adenylosuccinate lyase OS yes no 0.741 0.728 0.530 1e-104
Q8K9Q7456 Adenylosuccinate lyase OS yes no 0.745 0.732 0.520 1e-101
P57351456 Adenylosuccinate lyase OS yes no 0.745 0.732 0.5 3e-99
Q89AM3460 Adenylosuccinate lyase OS yes no 0.734 0.715 0.516 3e-94
Q54J34466 Adenylosuccinate lyase OS yes no 0.745 0.716 0.482 3e-84
>sp|P44797|PUR8_HAEIN Adenylosuccinate lyase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=purB PE=3 SV=1 Back     alignment and function desciption
 Score =  437 bits (1124), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 207/355 (58%), Positives = 263/355 (74%)

Query: 76  FELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFS 135
            +LS+LTALSPLDGRY  KV  L    SE+GL+ FRV VE++WL KL+   ++TEVP FS
Sbjct: 1   MQLSTLTALSPLDGRYQDKVTPLRAIFSEFGLMKFRVAVEVRWLQKLASTADITEVPPFS 60

Query: 136 EEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFA 195
            +A ++L G++  FN  DA  +K IER TNHDVKAVEYFLK+K Q++ E+ KV EF HFA
Sbjct: 61  TQANAFLDGIVANFNEADAARIKEIERTTNHDVKAVEYFLKEKIQNEVELVKVSEFIHFA 120

Query: 196 CTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTL 255
           CTSEDINNL+HALML  A ++V+ P   KLI  +  +A++   I +LSRTHGQPASP+T+
Sbjct: 121 CTSEDINNLSHALMLSTARDEVILPEWQKLIDEITRLAEEYKTIPLLSRTHGQPASPSTV 180

Query: 256 GKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLS 315
           GKE++    RL R+ +++   EI+GK  GAVGNYNAHLSAYP+++W + +E+FV SLG+ 
Sbjct: 181 GKEMANVVYRLKRQFKQLQNAEILGKINGAVGNYNAHLSAYPNIDWHKFSEEFVTSLGIQ 240

Query: 316 FNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPH 375
           +NPY TQIE HDY+ + F A VRFN I+IDFDRD+WGYI+L +FKQ T AGEIGSSTMPH
Sbjct: 241 WNPYTTQIEPHDYITEFFDAVVRFNTIIIDFDRDLWGYIALNHFKQRTIAGEIGSSTMPH 300

Query: 376 KVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQVRSNLTLLLIFFNFDLWLCLL 430
           KVNPIDFENSEGNLG AN  ++ L  KLPISRWQ     + +L      L  CL+
Sbjct: 301 KVNPIDFENSEGNLGLANAVMTHLGQKLPISRWQRDLTDSTVLRNLGVGLGYCLI 355

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)
EC: 4EC: .EC: 3EC: .EC: 2EC: .EC: 2
>sp|Q9I0K9|PUR8_PSEAE Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|P0AB89|PUR8_ECOLI Adenylosuccinate lyase OS=Escherichia coli (strain K12) GN=purB PE=1 SV=1 Back     alignment and function description
>sp|P0AB90|PUR8_ECOL6 Adenylosuccinate lyase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|A5IGB3|PUR8_LEGPC Adenylosuccinate lyase OS=Legionella pneumophila (strain Corby) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|Q5ZXD1|PUR8_LEGPH Adenylosuccinate lyase OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=purB PE=1 SV=1 Back     alignment and function description
>sp|Q8K9Q7|PUR8_BUCAP Adenylosuccinate lyase OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|P57351|PUR8_BUCAI Adenylosuccinate lyase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|Q89AM3|PUR8_BUCBP Adenylosuccinate lyase OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=purB PE=3 SV=1 Back     alignment and function description
>sp|Q54J34|PUR8_DICDI Adenylosuccinate lyase OS=Dictyostelium discoideum GN=purB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
359486726 553 PREDICTED: adenylosuccinate lyase-like [ 0.897 0.726 0.751 0.0
147854045533 hypothetical protein VITISV_004401 [Viti 0.877 0.737 0.759 1e-180
224112593 549 predicted protein [Populus trichocarpa] 0.839 0.684 0.769 1e-174
17978590537 adenylosuccinate-AMP lyase [Vigna unguic 0.837 0.698 0.758 1e-171
255579132473 adenylosuccinate lyase, putative [Ricinu 0.752 0.712 0.824 1e-170
357509879530 Adenylosuccinate lyase [Medicago truncat 0.881 0.745 0.721 1e-170
356501123537 PREDICTED: adenylosuccinate lyase-like [ 0.866 0.722 0.727 1e-169
356551534532 PREDICTED: adenylosuccinate lyase-like [ 0.810 0.682 0.765 1e-169
297835352530 hypothetical protein ARALYDRAFT_898833 [ 0.839 0.709 0.722 1e-164
297800214537 hypothetical protein ARALYDRAFT_493016 [ 0.892 0.744 0.681 1e-164
>gi|359486726|ref|XP_002276177.2| PREDICTED: adenylosuccinate lyase-like [Vitis vinifera] gi|296086100|emb|CBI31541.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  653 bits (1684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/422 (75%), Positives = 358/422 (84%), Gaps = 20/422 (4%)

Query: 1   MELGASSRVLSNNTLLRFSPESTFRRRYQV--PVNPTSLNHHQRRFSNASFQLSNSYSIR 58
           ME GASSRVL+ N    F+P S++ +   +    NP    HH    SN SF +S + S R
Sbjct: 1   MEFGASSRVLNPNQRSLFNPISSYHKSIGLFCSYNP----HHP---SNVSFHISAANSRR 53

Query: 59  ETTYKKVVNMSKVDS-----------REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGL 107
           +   K +V  + + S            +FEL+SLTALSPLDGRYWSKVKDLAPYMSEYGL
Sbjct: 54  DCICKAIVKDNSIKSEKGKRMPGEYSHDFELTSLTALSPLDGRYWSKVKDLAPYMSEYGL 113

Query: 108 IYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHD 167
           I+FRVLVEIKWLLKLS+IPEVTEVP FS+EA+SYLQGL+DGF+M DALEVKNIE+VTNHD
Sbjct: 114 IHFRVLVEIKWLLKLSQIPEVTEVPQFSKEAQSYLQGLVDGFSMSDALEVKNIEKVTNHD 173

Query: 168 VKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIK 227
           VKAVEYFLKQKCQS PEIAKVLEFFHFACTSEDINNLAHALMLKEA+N V+FPVMD+LIK
Sbjct: 174 VKAVEYFLKQKCQSHPEIAKVLEFFHFACTSEDINNLAHALMLKEAMNTVIFPVMDELIK 233

Query: 228 ALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVG 287
            +C +AKDNA+I+MLSRTHGQPASPTTLGKE+++FA+RL RERQ+ISQVEIMGKFAGAVG
Sbjct: 234 VICNMAKDNAHIAMLSRTHGQPASPTTLGKEMAIFAVRLSRERQDISQVEIMGKFAGAVG 293

Query: 288 NYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFD 347
           NYNAHL AYPD+NWPQI E+FVKSLGLSFNPYVTQIETHDYMAKLF+  ++FNNILIDFD
Sbjct: 294 NYNAHLIAYPDINWPQIAEEFVKSLGLSFNPYVTQIETHDYMAKLFHGIIQFNNILIDFD 353

Query: 348 RDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISR 407
           RD+W YIS+ YFKQ+TKAGEIGSSTMPHKVNPIDFENSEGNLGKAN  LS LSMKLPISR
Sbjct: 354 RDIWSYISVGYFKQITKAGEIGSSTMPHKVNPIDFENSEGNLGKANGGLSHLSMKLPISR 413

Query: 408 WQ 409
           WQ
Sbjct: 414 WQ 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147854045|emb|CAN81287.1| hypothetical protein VITISV_004401 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224112593|ref|XP_002316236.1| predicted protein [Populus trichocarpa] gi|222865276|gb|EEF02407.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|17978590|gb|AAL48316.1| adenylosuccinate-AMP lyase [Vigna unguiculata] Back     alignment and taxonomy information
>gi|255579132|ref|XP_002530414.1| adenylosuccinate lyase, putative [Ricinus communis] gi|223530063|gb|EEF31984.1| adenylosuccinate lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357509879|ref|XP_003625228.1| Adenylosuccinate lyase [Medicago truncatula] gi|124360652|gb|ABN08641.1| Fumarate lyase; Adenylosuccinate lyase [Medicago truncatula] gi|355500243|gb|AES81446.1| Adenylosuccinate lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356501123|ref|XP_003519378.1| PREDICTED: adenylosuccinate lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|356551534|ref|XP_003544129.1| PREDICTED: adenylosuccinate lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|297835352|ref|XP_002885558.1| hypothetical protein ARALYDRAFT_898833 [Arabidopsis lyrata subsp. lyrata] gi|297331398|gb|EFH61817.1| hypothetical protein ARALYDRAFT_898833 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|297800214|ref|XP_002867991.1| hypothetical protein ARALYDRAFT_493016 [Arabidopsis lyrata subsp. lyrata] gi|297313827|gb|EFH44250.1| hypothetical protein ARALYDRAFT_493016 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query448
TAIR|locus:2013215527 AT1G36280 [Arabidopsis thalian 0.834 0.709 0.717 9e-148
TAIR|locus:2124494536 AT4G18440 [Arabidopsis thalian 0.899 0.751 0.677 3.2e-145
TIGR_CMR|CPS_2902456 CPS_2902 "adenylosuccinate lya 0.743 0.730 0.609 1.9e-108
UNIPROTKB|Q9KSY0456 VC_1126 "Adenylosuccinate lyas 0.743 0.730 0.613 3.9e-108
TIGR_CMR|VC_1126456 VC_1126 "adenylosuccinate lyas 0.743 0.730 0.613 3.9e-108
UNIPROTKB|P0AB89456 purB [Escherichia coli K-12 (t 0.743 0.730 0.606 8.1e-108
TIGR_CMR|SO_2635456 SO_2635 "adenylosuccinate lyas 0.743 0.730 0.612 9.2e-107
TIGR_CMR|CBU_0824461 CBU_0824 "adenylosuccinate lya 0.743 0.722 0.522 1e-91
DICTYBASE|DDB_G0288333466 purB "adenylosuccinate lyase" 0.743 0.714 0.483 8.7e-79
GENEDB_PFALCIPARUM|PFB0295w471 PFB0295w "adenylosuccinate lya 0.743 0.707 0.455 1.1e-73
TAIR|locus:2013215 AT1G36280 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1443 (513.0 bits), Expect = 9.0e-148, P = 9.0e-148
 Identities = 272/379 (71%), Positives = 326/379 (86%)

Query:    32 VNPT-SLNHHQRRFSNASFQLSNSYSIRETTYKKVVNMSKVDSREFELSSLTALSPLDGR 90
             +NP+ SL+H  R     SF +S+ +S++  T  K++ M+   SR+FE+S+LTALSPLDGR
Sbjct:    24 LNPSKSLSHLPR----VSFSVSSPHSLKLMTSTKLIAMASASSRDFEMSNLTALSPLDGR 79

Query:    91 YWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFN 150
             YW KVKDLA  MSE+GLIYFRVLVEIKWL+KLS IP+VTEVPSFS+EA  YLQG+IDGF+
Sbjct:    80 YWGKVKDLASSMSEFGLIYFRVLVEIKWLIKLSNIPQVTEVPSFSKEAHKYLQGIIDGFS 139

Query:   151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALML 210
             MDDAL+VK IERVTNHDVKAVEYFLKQKC+S PEIAKVLEFFHFACTSEDINNL+HALML
Sbjct:   140 MDDALQVKKIERVTNHDVKAVEYFLKQKCESHPEIAKVLEFFHFACTSEDINNLSHALML 199

Query:   211 KEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRER 270
             +EA++ V+ P MD+LIK++  +AK  A + MLSRTHGQPASPTTLGKE+++FA+RL  ER
Sbjct:   200 QEALSSVILPTMDELIKSISLMAKSFAYVPMLSRTHGQPASPTTLGKEMAIFAVRLSVER 259

Query:   271 QEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYMA 330
             + +S+ +I GKFAGAVGNYNAH+SAY +++WP + E+FV SLGL+FNPYVTQIE HDYMA
Sbjct:   260 RYLSETKIKGKFAGAVGNYNAHISAYSNIDWPHVAEEFVTSLGLTFNPYVTQIEPHDYMA 319

Query:   331 KLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG 390
             +LF    +FNN+LIDFDRD+W YISL YFKQ+TKAGEIGSSTMPHKVNPIDFENSEGNLG
Sbjct:   320 RLFNTISQFNNVLIDFDRDIWSYISLGYFKQITKAGEIGSSTMPHKVNPIDFENSEGNLG 379

Query:   391 KANEDLSFLSMKLPISRWQ 409
             KAN +L+FLSMKLPISR Q
Sbjct:   380 KANAELAFLSMKLPISRMQ 398
GO:0003824 "catalytic activity" evidence=IEA
GO:0004018 "N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity" evidence=IEA;ISS
GO:0006188 "IMP biosynthetic process" evidence=IEA
GO:0009152 "purine ribonucleotide biosynthetic process" evidence=IEA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2124494 AT4G18440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2902 CPS_2902 "adenylosuccinate lyase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KSY0 VC_1126 "Adenylosuccinate lyase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1126 VC_1126 "adenylosuccinate lyase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0AB89 purB [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_2635 SO_2635 "adenylosuccinate lyase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0824 CBU_0824 "adenylosuccinate lyase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288333 purB "adenylosuccinate lyase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PFB0295w PFB0295w "adenylosuccinate lyase, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5IGB3PUR8_LEGPC4, ., 3, ., 2, ., 20.53310.74100.7280yesno
P44797PUR8_HAEIN4, ., 3, ., 2, ., 20.58300.79240.7785yesno
Q89AM3PUR8_BUCBP4, ., 3, ., 2, ., 20.51660.73430.7152yesno
Q9I0K9PUR8_PSEAE4, ., 3, ., 2, ., 20.61190.74550.7324yesno
P0AB90PUR8_ECOL64, ., 3, ., 2, ., 20.60470.74550.7324yesno
Q5ZXD1PUR8_LEGPH4, ., 3, ., 2, ., 20.53010.74100.7280yesno
Q8K9Q7PUR8_BUCAP4, ., 3, ., 2, ., 20.52090.74550.7324yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.3.2.2LOW CONFIDENCE prediction!
3rd Layer4.3.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
PLN02848458 PLN02848, PLN02848, adenylosuccinate lyase 0.0
PRK09285456 PRK09285, PRK09285, adenylosuccinate lyase; Provis 0.0
cd01598425 cd01598, PurB, PurB_like adenylosuccinases (adenyl 0.0
cd01595381 cd01595, Adenylsuccinate_lyase_like, Adenylsuccina 1e-108
COG0015438 COG0015, PurB, Adenylosuccinate lyase [Nucleotide 8e-93
TIGR00928435 TIGR00928, purB, adenylosuccinate lyase 3e-92
cd01334325 cd01334, Lyase_I, Lyase class I family; a group of 3e-66
pfam00206312 pfam00206, Lyase_1, Lyase 2e-56
cd01360387 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate 6e-33
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 1e-31
PRK08540449 PRK08540, PRK08540, adenylosuccinate lyase; Review 5e-24
cd01597437 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco 3e-23
PRK06390451 PRK06390, PRK06390, adenylosuccinate lyase; Provis 6e-17
PRK07492435 PRK07492, PRK07492, adenylosuccinate lyase; Provis 3e-16
PRK08470 442 PRK08470, PRK08470, adenylosuccinate lyase; Provis 6e-15
TIGR02426338 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona 9e-13
PRK09053452 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cyc 2e-12
PRK07380431 PRK07380, PRK07380, adenylosuccinate lyase; Provis 3e-12
cd03302436 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate 5e-12
COG1027471 COG1027, AspA, Aspartate ammonia-lyase [Amino acid 4e-09
cd01357450 cd01357, Aspartase, Aspartase 2e-07
cd01362455 cd01362, Fumarase_classII, Class II fumarases 9e-07
cd01596450 cd01596, Aspartase_like, aspartase (L-aspartate am 9e-07
COG0165 459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 2e-06
TIGR00979458 TIGR00979, fumC_II, fumarate hydratase, class II 3e-06
COG0114462 COG0114, FumC, Fumarase [Energy production and con 4e-06
PRK05975351 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cyc 6e-06
cd01359435 cd01359, Argininosuccinate_lyase, Argininosuccinat 7e-06
PRK12425464 PRK12425, PRK12425, fumarate hydratase; Provisiona 1e-05
PRK12273472 PRK12273, aspA, aspartate ammonia-lyase; Provision 2e-05
PRK00485464 PRK00485, fumC, fumarate hydratase; Reviewed 4e-05
PLN00134458 PLN00134, PLN00134, fumarate hydratase; Provisiona 5e-05
PRK13353473 PRK13353, PRK13353, aspartate ammonia-lyase; Provi 2e-04
TIGR00838455 TIGR00838, argH, argininosuccinate lyase 2e-04
TIGR00839468 TIGR00839, aspA, aspartate ammonia-lyase 0.001
PRK00855459 PRK00855, PRK00855, argininosuccinate lyase; Provi 0.002
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase Back     alignment and domain information 
 Score =  675 bits (1744), Expect = 0.0
 Identities = 258/337 (76%), Positives = 300/337 (89%)

Query: 73  SREFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVP 132
           SR+ ELS+LTALSPLDGRYWSKVKDL P  SE+GLI +RVLVE+KWLLKLS+IPEVTEVP
Sbjct: 1   SRDLELSNLTALSPLDGRYWSKVKDLRPIFSEFGLIRYRVLVEVKWLLKLSQIPEVTEVP 60

Query: 133 SFSEEAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFF 192
            FS+EA S+L+G+I GF++DDALEVK IERVTNHDVKAVEYFLKQKC+S PE+AKVLEFF
Sbjct: 61  PFSDEANSFLEGIIAGFSVDDALEVKKIERVTNHDVKAVEYFLKQKCKSHPELAKVLEFF 120

Query: 193 HFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASP 252
           HFACTSEDINNL+HALMLKE +N V+ P MD++IKA+  +A + A + MLSRTHGQPASP
Sbjct: 121 HFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASP 180

Query: 253 TTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSL 312
           TTLGKE++ FA RL R+R+++S+V+I GKFAGAVGNYNAH+SAYP+V+WP + E+FV SL
Sbjct: 181 TTLGKEMANFAYRLSRQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVTSL 240

Query: 313 GLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSST 372
           GL+FNPYVTQIE HDYMA+LF A  RFNNILIDFDRD+W YISL YFKQ+TKAGE+GSST
Sbjct: 241 GLTFNPYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSST 300

Query: 373 MPHKVNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
           MPHKVNPIDFENSEGNLG AN +LS LSMKLPISR Q
Sbjct: 301 MPHKVNPIDFENSEGNLGLANAELSHLSMKLPISRMQ 337

Length = 458
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|176462 cd01357, Aspartase, Aspartase Back     alignment and domain information
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases Back     alignment and domain information
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II Back     alignment and domain information
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed Back     alignment and domain information
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase Back     alignment and domain information
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 448
PLN02848458 adenylosuccinate lyase 100.0
COG0015438 PurB Adenylosuccinate lyase [Nucleotide transport 100.0
PRK09285456 adenylosuccinate lyase; Provisional 100.0
cd03302436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 100.0
cd01598425 PurB PurB_like adenylosuccinases (adenylsuccinate 100.0
PRK07380431 adenylosuccinate lyase; Provisional 100.0
PRK08540449 adenylosuccinate lyase; Reviewed 100.0
PRK07492435 adenylosuccinate lyase; Provisional 100.0
PRK08470442 adenylosuccinate lyase; Provisional 100.0
cd01595381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 100.0
PRK06390451 adenylosuccinate lyase; Provisional 100.0
cd01360387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 100.0
TIGR00928435 purB adenylosuccinate lyase. This family consists 100.0
cd01597437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 100.0
PRK05975351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
PRK09053452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
TIGR02426338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 100.0
COG0165459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
PRK04833455 argininosuccinate lyase; Provisional 100.0
cd01334325 Lyase_I Lyase class I family; a group of proteins 100.0
PRK06705 502 argininosuccinate lyase; Provisional 100.0
PF00206312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 100.0
TIGR00838455 argH argininosuccinate lyase. This model describes 100.0
cd01359435 Argininosuccinate_lyase Argininosuccinate lyase (a 100.0
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 100.0
PLN02646474 argininosuccinate lyase 100.0
cd01357450 Aspartase Aspartase. This subgroup contains Escher 100.0
PRK12273472 aspA aspartate ammonia-lyase; Provisional 100.0
PRK00485464 fumC fumarate hydratase; Reviewed 100.0
PRK02186 887 argininosuccinate lyase; Provisional 100.0
PRK00855459 argininosuccinate lyase; Provisional 100.0
PRK13353473 aspartate ammonia-lyase; Provisional 100.0
TIGR00979458 fumC_II fumarate hydratase, class II. Putative fum 100.0
cd01362455 Fumarase_classII Class II fumarases. This subgroup 100.0
PRK06389434 argininosuccinate lyase; Provisional 100.0
TIGR00839468 aspA aspartate ammonia-lyase. Fumarate hydratase s 100.0
cd01596450 Aspartase_like aspartase (L-aspartate ammonia-lyas 100.0
KOG1316464 consensus Argininosuccinate lyase [Amino acid tran 100.0
PLN00134458 fumarate hydratase; Provisional 100.0
PRK12425464 fumarate hydratase; Provisional 100.0
PRK14515479 aspartate ammonia-lyase; Provisional 100.0
KOG2700 481 consensus Adenylosuccinate lyase [Nucleotide trans 100.0
COG0114462 FumC Fumarase [Energy production and conversion] 100.0
COG1027471 AspA Aspartate ammonia-lyase [Amino acid transport 100.0
KOG1317487 consensus Fumarase [Energy production and conversi 100.0
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 100.0
KOG2700481 consensus Adenylosuccinate lyase [Nucleotide trans 99.77
PRK08937216 adenylosuccinate lyase; Provisional 99.7
>PLN02848 adenylosuccinate lyase Back     alignment and domain information 
Probab=100.00  E-value=2.3e-76  Score=620.61  Aligned_cols=366  Identities=69%  Similarity=1.095  Sum_probs=318.1

Q ss_pred             ccccccccccCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCC---CCCcHHHHHHHHHHHccCC
Q 013159           74 REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEV---PSFSEEAKSYLQGLIDGFN  150 (448)
Q Consensus        74 ~~~~~~~~~~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giI---p~~~a~a~~~i~~~~~~~~  150 (448)
                      ++|++++++++||+++||++++++|+.+|||++++++|++||++|+++|+   +.|+|   |+.+.++++.|.+.+.+|.
T Consensus         2 ~~~~~~~~~~~~pl~~ry~~~~~e~~~ifSd~a~~~~~l~vE~ala~a~a---~~g~i~~~P~i~~~aa~~i~~~~~~~~   78 (458)
T PLN02848          2 RDLELSNLTALSPLDGRYWSKVKDLRPIFSEFGLIRYRVLVEVKWLLKLS---QIPEVTEVPPFSDEANSFLEGIIAGFS   78 (458)
T ss_pred             CCCCccccccCCCchhhhcCCcHHHHHHcCHHHHHHHHHHHHHHHHHHHH---hcCCCCCCCCCCHHHHHHHHHHHHhcC
Confidence            35778899999999999998889999999999999999999999999999   88988   8766677777766655576


Q ss_pred             cccHHhHHHHHhhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159          151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALC  230 (448)
Q Consensus       151 ~~d~~~l~~~e~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~  230 (448)
                      .+|+++++++++.++|||+++|++|+++++..+++.+.++|||+|+|||||+||+++|++|+++..++.+.|..++++|.
T Consensus        79 ~~d~~~~~~~e~~t~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~  158 (458)
T PLN02848         79 VDDALEVKKIERVTNHDVKAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAIS  158 (458)
T ss_pred             HhhHHHHHHHHHHhCCCcHHHHHHHHHHhccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66899999999999999999999999999742222236799999999999999999999999998339999999999999


Q ss_pred             HHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhHhhhcccccccccccccccCCCCChhhhHHHHHH
Q 013159          231 EIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK  310 (448)
Q Consensus       231 ~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~  310 (448)
                      ++|.+|++++|+||||+|||+|||||+|+++|+++|.|+++||.++.+.|+++|||||+++++..+|++||+.+.+++++
T Consensus       159 ~lA~~~~dt~m~GRTH~Q~A~PiTfG~~~a~w~~~L~r~~~rL~~~~l~g~~~GAvGt~aa~~~~~~~~d~~~v~~~la~  238 (458)
T PLN02848        159 SLAHEFAYVPMLSRTHGQPASPTTLGKEMANFAYRLSRQRKQLSEVKIKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVT  238 (458)
T ss_pred             HHHHHhcCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHhccEeecccchhhhhhhccCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999997779999999999998767888999999999999


Q ss_pred             HcCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCCCcccCCCCCCcCchHHHHhhhhhh
Q 013159          311 SLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG  390 (448)
Q Consensus       311 ~LGL~~~~~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~  390 (448)
                      .|||..++..+|+.+||++++++++++.++++|.||++|+|.+.++|++.+...++++|||||||||||+.+|+++++++
T Consensus       239 ~LGL~~~~~~~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~~e~ge~~e~~~~~~~GSS~MP~KrNPv~~E~i~~~a~  318 (458)
T PLN02848        239 SLGLTFNPYVTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYISLGYFKQITKAGEVGSSTMPHKVNPIDFENSEGNLG  318 (458)
T ss_pred             HhCCCCCCchhhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCcccccCCCCCCcCCCCCCcCcHHHHHHHHHHH
Confidence            99999866656789999999999999999999999999999999999988767678999999999999999999998766


Q ss_pred             hhhHHHhhhhhhccccccccccccchH--HHHHhHHH---HHHHHhhcccccccccc
Q 013159          391 KANEDLSFLSMKLPISRWQVRSNLTLL--LIFFNFDL---WLCLLRQVPWYLKFKSD  442 (448)
Q Consensus       391 la~~v~g~la~~L~~s~~qRDl~~~~~--~~~~~~~~---~~~ll~~~~~~~~~~~~  442 (448)
                      .++.....+...++.+++|||+++|..  .+..++..   ....+..+...++|++|
T Consensus       319 ~~~~~~~~~~~~~~~~~~eRD~~~s~~e~~~~~~~~~~~~al~~~~~~l~~L~v~~~  375 (458)
T PLN02848        319 LANAELSHLSMKLPISRMQRDLTDSTVLRNMGVGLGHSLLAYKSTLRGIGKLQVNEA  375 (458)
T ss_pred             HHHHHHHHHHhcCcchhhccccchhhhhccHHHHHHHHHHHHHHHHHHHccCEECHH
Confidence            444444444444466789999998752  22333332   66677777788888765

>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information
>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0114 FumC Fumarase [Energy production and conversion] Back     alignment and domain information
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1317 consensus Fumarase [Energy production and conversion] Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08937 adenylosuccinate lyase; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
3gzh_A482 Crystal Structure Of Phosphate-Bound Adenylosuccina 1e-121
2ptq_A462 Crystal Structure Of Escherichia Coli Adenylosuccin 1e-120
2ptr_A462 Crystal Structure Of Escherichia Coli Adenylosuccin 1e-120
2pts_A462 Crystal Structure Of Wild Type Escherichia Coli Ade 1e-118
3bhg_A459 Crystal Structure Of Adenylosuccinate Lyase From Le 1e-102
4efc_A472 Crystal Structure Of Adenylosuccinate Lyase From Tr 2e-86
2qga_B465 Plasmodium Vivax Adenylosuccinate Lyase Pv003765 Wi 2e-74
2hvg_A482 Crystal Structure Of Adenylosuccinate Lyase From Pl 4e-73
2x75_A431 Staphylococcus Aureus Adenylosuccinate Lyase Length 8e-19
1f1o_A431 Structural Studies Of Adenylosuccinate Lyases Lengt 5e-18
1c3u_A431 T. Maritima Adenylosuccinate Lyase Length = 431 8e-18
1c3c_A429 T. Maritima Adenylosuccinate Lyase Length = 429 9e-18
2pfm_A444 Crystal Structure Of Adenylosuccinate Lyase (Purb) 1e-17
4eei_A438 Crystal Structure Of Adenylosuccinate Lyase From Fr 1e-15
1re5_A450 Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lac 1e-10
1dof_A403 The Crystal Structure Of Adenylosuccinate Lyase Fro 8e-10
2vd6_A 503 Human Adenylosuccinate Lyase In Complex With Its Su 2e-08
4ffx_A 487 Structural And Biochemical Characterization Of Huma 2e-08
2j91_A 503 Crystal Structure Of Human Adenylosuccinate Lyase I 2e-08
4flc_A 487 Structural And Biochemical Characterization Of Huma 2e-08
3c8t_A451 Crystal Structure Of Fumarate Lyase From Mesorhizob 1e-07
1vdk_A466 Crystal Structure Of Fumarase From Thermus Thermoph 2e-07
1q5n_A454 Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate 5e-07
1yfm_A488 Recombinant Yeast Fumarase Length = 488 5e-06
2fus_A467 Mutations Of Fumarase That Distinguish Between The 3e-05
1fuo_A467 Fumarase C With Bound Citrate Length = 467 3e-05
1fup_A472 Fumarase With Bound Pyromellitic Acid Length = 472 3e-05
1kq7_A467 E315q Mutant Form Of Fumarase C From E.Coli Length 4e-05
2fel_A359 3-carboxy-cis,cis-muconate Lactonizing Enzyme From 5e-05
1fur_A467 Fumarase Mutant H188n With Bound Substrate L-Malate 2e-04
1yis_A 478 Structural Genomics Of Caenorhabditis Elegans: Aden 2e-04
3tv2_A459 Structure Of A Class Ii Fumarate Hydratase From Bur 4e-04
4hgv_A495 Crystal Structure Of A Fumarate Hydratase Length = 5e-04
3rrp_A471 Crystal Structure Of Fumarate Hydratase Fum From My 6e-04
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate Lyase From E. Coli Length = 482 Back     alignment and structure 
Iteration: 1

 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 202/333 (60%), Positives = 256/333 (76%)
Query: 77  ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE 136
           ELSSLTA+SP+DGRY  KV  L    SEYGL+ FRV VE++WL KL+    + EVP+F+ 
Sbjct: 28  ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAA 87
Query: 137 EAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC 196
           +A  YL  ++  F+ +DA  +K IER TNHDVKAVEYFLK+K    PE+  V EF HFAC
Sbjct: 88  DAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFAC 147
Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
           TSEDINNL+HALMLK A ++V+ P   +LI  + ++A    +I +LSRTHGQPA+P+T+G
Sbjct: 148 TSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIG 207
Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316
           KE++  A R+ R+ ++++QVEI+GK  GAVGNYNAH++AYP+V+W Q +E+FV SLG+ +
Sbjct: 208 KEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQW 267
Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
           NPY TQIE HDY+A+LF    RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSSTMPHK
Sbjct: 268 NPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHK 327
Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
           VNPIDFENSEGNLG +N  L  L+ KLP+SRWQ
Sbjct: 328 VNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ 360
>pdb|2PTQ|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate Lyase Mutant H171n With Bound Amp And Fumarate Length = 462 Back     alignment and structure
>pdb|2PTR|A Chain A, Crystal Structure Of Escherichia Coli Adenylosuccinate Lyase Mutant H171a With Bound Adenylosuccinate Substrate Length = 462 Back     alignment and structure
>pdb|2PTS|A Chain A, Crystal Structure Of Wild Type Escherichia Coli Adenylosuccinate Lyase Length = 462 Back     alignment and structure
>pdb|3BHG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Legionella Pneumophila Length = 459 Back     alignment and structure
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Trypanosoma Brucei, Tb427tmp.160.5560 Length = 472 Back     alignment and structure
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp Bound Length = 465 Back     alignment and structure
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Plasmodium Vivax Length = 482 Back     alignment and structure
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases Length = 431 Back     alignment and structure
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 429 Back     alignment and structure
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From Bacillus Anthracis Length = 444 Back     alignment and structure
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Francisella Tularensis Complexed With Amp And Succinate Length = 438 Back     alignment and structure
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 450 Back     alignment and structure
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From Pyrobaculum Aerophilum: Insights Into Thermal Stability And Human Pathology Length = 403 Back     alignment and structure
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And Fumarate. Length = 503 Back     alignment and structure
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487 Back     alignment and structure
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In Complex With Amp Length = 503 Back     alignment and structure
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human Adenylosuccinate Lyase (Adsl) And The R303c Adsl Deficiency Associated Mutation Length = 487 Back     alignment and structure
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. Bnc1 Length = 451 Back     alignment and structure
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus Hb8 Length = 466 Back     alignment and structure
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus Sp. Adp1 Length = 454 Back     alignment and structure
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase Length = 488 Back     alignment and structure
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active Site And A Nearby Dicarboxylic Acid Binding Site Length = 467 Back     alignment and structure
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate Length = 467 Back     alignment and structure
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid Length = 472 Back     alignment and structure
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli Length = 467 Back     alignment and structure
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From Agrobacterium Radiobacter S2 Length = 359 Back     alignment and structure
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At Putative Activator Site Length = 467 Back     alignment and structure
>pdb|1YIS|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Adenylosuccinate Lyase Length = 478 Back     alignment and structure
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From Burkholderia Pseudomallei Length = 459 Back     alignment and structure
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase Length = 495 Back     alignment and structure
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From Mycobacterium Abscessus With Malate Bound Length = 471 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query448
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 1e-157
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 1e-155
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 1e-154
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 8e-37
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 3e-36
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 3e-36
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 5e-36
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 1e-34
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 2e-33
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 8e-32
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 8e-32
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 7e-31
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 1e-30
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 5e-07
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 6e-07
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 6e-07
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 6e-07
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 8e-07
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 9e-07
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 5e-06
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 8e-06
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Length = 462 Back     alignment and structure
 Score =  451 bits (1161), Expect = e-157
 Identities = 202/333 (60%), Positives = 255/333 (76%)

Query: 77  ELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSE 136
           ELSSLTA+SP+DGRY  KV  L    SEYGL+ FRV VE++WL KL+    + EVP+F+ 
Sbjct: 2   ELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAA 61

Query: 137 EAKSYLQGLIDGFNMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFAC 196
           +A  YL  ++  F+ +DA  +K IER TNHDVKAVEYFLK+K    PE+  V EF HFAC
Sbjct: 62  DAIGYLDAIVASFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFAC 121

Query: 197 TSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLG 256
           TSEDINNL+HALMLK A ++V+ P   +LI  L ++A    +I +LSRT GQPA+P+T+G
Sbjct: 122 TSEDINNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIG 181

Query: 257 KEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSF 316
           KE++  A R+ R+ ++++QVEI+GK  GAVGNYNAH++AYP+V+W Q +E+FV SLG+ +
Sbjct: 182 KEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQW 241

Query: 317 NPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHK 376
           NPY TQIE HDY+A+LF    RFN ILIDFDRDVWGYI+L +FKQ T AGEIGSSTMPHK
Sbjct: 242 NPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHK 301

Query: 377 VNPIDFENSEGNLGKANEDLSFLSMKLPISRWQ 409
           VNPIDFENSEGNLG +N  L  L+ KLP+SRWQ
Sbjct: 302 VNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQ 334
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465 Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Length = 459 Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403 Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451 Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450 Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503 Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359 Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Length = 490 Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Length = 467 Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Length = 466 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Length = 495 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB: 1j3u_A 3r6v_A 3r6y_A Length = 468 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Length = 478 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 100.0
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 100.0
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 100.0
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 100.0
2j91_A 503 Adenylosuccinate lyase; disease mutation, adenylos 100.0
1yis_A 478 Adenylosuccinate lyase; structural genomics, PSI, 100.0
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 100.0
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 100.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 100.0
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 100.0
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 100.0
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 100.0
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 100.0
1k7w_A 468 Delta 2 crystallin; eye lens protein, argininosucc 100.0
1tj7_A457 Argininosuccinate lyase; crystallin, E. coli, fuma 100.0
2e9f_A462 Argininosuccinate lyase; alpha helix bundle; HET: 100.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 100.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 100.0
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 100.0
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 100.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 100.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 100.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 100.0
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 100.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 100.0
4hgv_A495 Fumarase C, fumarate hydratase class II; nysgrc, P 100.0
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure
Probab=100.00  E-value=1e-79  Score=646.66  Aligned_cols=366  Identities=49%  Similarity=0.806  Sum_probs=322.8

Q ss_pred             ccccccccccCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCC-CC--CCCCcHHHHHHHHHHHccCC
Q 013159           74 REFELSSLTALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEV-TE--VPSFSEEAKSYLQGLIDGFN  150 (448)
Q Consensus        74 ~~~~~~~~~~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~-gi--Ip~~~a~a~~~i~~~~~~~~  150 (448)
                      .+|+++.||++|||+|||.+++++|+.+|||++++++|+++|+||++||+   +. |+  ||+.++++.+.|.+.+++|.
T Consensus         2 ~~~~~~~~~~~s~~~gRy~~~~~~~~~~fsd~~~~~~~l~ve~a~~~ala---~~~gi~~ip~i~~~~~~~i~~~~~~~~   78 (459)
T 3bhg_A            2 NAMTLTALNAISPIDGRYVNKTRALSPYFSEFALTYYRLMVEIKWFESLA---ANDTIPEVPALDNKARKFLSDLISNFN   78 (459)
T ss_dssp             ----CCGGGCSSTTTTTTHHHHGGGTTTSSHHHHHHHHHHHHHHHHHHHH---TCTTCTTSCCCCHHHHHHHHHHHHTCC
T ss_pred             CCCCcccccccCcccccccCChHHHHHHcCHHHHHHHHHHHHHHHHHHHH---hccCCCCCCCCCHHHHHHHHHHHHHhc
Confidence            45788999999999999998888999999999999999999999999999   77 66  66667788888888777887


Q ss_pred             cccHHhHHHHHhhhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 013159          151 MDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALC  230 (448)
Q Consensus       151 ~~d~~~l~~~e~~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~  230 (448)
                      ..|+++++++++.++|||+++|++|++++|+.++++++++|||+|||||||++|+++|++|+++...+.+.|.+++++|.
T Consensus        79 ~~d~~~~~~~e~~~~~Dv~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~  158 (459)
T 3bhg_A           79 ESEAEKIKEFEKQTNHDVKAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSIT  158 (459)
T ss_dssp             HHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhcCCChHHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66888999999999999999999999999864444468999999999999999999999999998239999999999999


Q ss_pred             HHHHHcccceeeccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhHhhhcccccccccccccccCCCCChhhhHHHHHH
Q 013159          231 EIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRERQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVK  310 (448)
Q Consensus       231 ~lA~~~~dt~m~gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~  310 (448)
                      ++|++|++++|+||||+|||+||||||+|++|++.|.|+++||.++..+++++|||||+|++...||++||+.+++++++
T Consensus       159 ~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~GAvGT~~a~~~~~~~~~~~~~~~~~~~  238 (459)
T 3bhg_A          159 LLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVT  238 (459)
T ss_dssp             HHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCCCEECCCCSSSSCHHHHHHCTTSCHHHHHHHHHH
T ss_pred             HHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccCcccHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888889999999999878999999999999999


Q ss_pred             HcCCCCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhccceeeecCCCCcccCCCCCCcCchHHHHhhhhhh
Q 013159          311 SLGLSFNPYVTQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLG  390 (448)
Q Consensus       311 ~LGL~~~~~~~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~  390 (448)
                      .|||..+++++|+.+||++++++++++.++++|+|||+|||+|++.|++++.++++++|||||||||||+.+|+++|+++
T Consensus       239 ~LGl~~~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~~~~~e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~  318 (459)
T 3bhg_A          239 SLGLSFNAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGYFKQKTIAEEVGSSTMPHKVNPIDFENAEGNLG  318 (459)
T ss_dssp             HTTCEECSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEECC------CCSSCCCCCTHHHHHHHHHHH
T ss_pred             HhCCCCCccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceehccCCCCCCCCCCCCCcChHHHHHHHHHHH
Confidence            99999999988999999999999999999999999999999999888888889999999999999999999999999999


Q ss_pred             hhhHHHhhhhhhccccccccccccchH--HHHHhHHH---HHHHHhhcccccccccc
Q 013159          391 KANEDLSFLSMKLPISRWQVRSNLTLL--LIFFNFDL---WLCLLRQVPWYLKFKSD  442 (448)
Q Consensus       391 la~~v~g~la~~L~~s~~qRDl~~~~~--~~~~~~~~---~~~ll~~~~~~~~~~~~  442 (448)
                      +++.....+...++.+.||||+++++.  .++..+.+   .+..+..+...++|++|
T Consensus       319 l~~~~~~~~~~~l~~~~~~rdl~~s~~~r~l~~~~~~~~~~l~~~~~~l~gl~vn~e  375 (459)
T 3bhg_A          319 LSNALFIHFANKLTQSRMQRDLSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKS  375 (459)
T ss_dssp             HHHHHHHHHHHHTTCCSTTCCTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTEEECHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHCcCEECHH
Confidence            877777777777777899999999975  35666665   33445666777888765
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 448
d1c3ca_429 a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga 1e-37
d1dofa_402 a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py 1e-32
d1yfma_459 a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy 3e-25
d1re5a_448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 6e-24
d1q5na_444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 1e-20
d1vdka_460 a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax 5e-20
d1jswa_459 a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric 1e-13
d1fuoa_456 a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 5e-11
d1tj7a_ 455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 3e-09
d1tjva_ 449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 4e-08
d1k62b_ 459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 4e-07
d1j3ua_462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 8e-07
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Thermotoga maritima [TaxId: 2336]

 Score =  140 bits (352), Expect = 1e-37
 Identities = 62/319 (19%), Positives = 112/319 (35%), Gaps = 26/319 (8%)

Query: 90  RYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGF 149
           RY   +  +    +E       + VE+       ++  + +        +          
Sbjct: 3   RY--SLSPMKDLWTEEAKYRRWLEVELAVTRAYEELGMIPK-----GVTERIRNNAKI-- 53

Query: 150 NMDDALEVKNIERVTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALM 209
              D    K IE  TNHDV A    +         I +   FFH+  TS D+ + A++L 
Sbjct: 54  ---DVELFKKIEEKTNHDVVAFVEGIGSM------IGEDSRFFHYGLTSSDVLDTANSLA 104

Query: 210 LKEAINKVMFPVMDKLIKALCEIAKDNANISMLSRTHGQPASPTTLGKEISVFAIRLGRE 269
           L EA   ++  + +     L E+A    +   + RTHG  A PT+ G ++  +   + R 
Sbjct: 105 LVEAGKILLESLKEF-CDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRN 163

Query: 270 RQEISQVEIMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYVTQIETHDYM 329
            Q + +      +    G    + +  P+V    ++   +K       P  TQ+   D  
Sbjct: 164 VQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLK-----PEPVSTQVVPRDRH 218

Query: 330 AKLFYAFVRFNNILIDFDRDV--WGYISLAYFKQVTKAGEIGSSTMPHKVNPIDFENSEG 387
           A            +     ++       +   ++  + G+ GSS MPHK NPI  E   G
Sbjct: 219 AFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTG 278

Query: 388 NLGKANEDLSFLSMKLPIS 406
                   +      + + 
Sbjct: 279 LSRMMRAYVDPSLENIALW 297
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402 Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query448
d1dofa_402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 100.0
d1c3ca_429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 100.0
d1f1oa_408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 100.0
d1re5a_448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1q5na_444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1tj7a_455 Argininosuccinate lyase/delta-crystallin {Escheric 100.0
d1k62b_459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1tjva_ 449 Argininosuccinate lyase/delta-crystallin {Domestic 100.0
d1vdka_460 Fumarase {Thermus thermophilus [TaxId: 274]} 100.0
d1j3ua_462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 100.0
d1yfma_459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 100.0
d1jswa_459 L-aspartate ammonia lyase {Escherichia coli [TaxId 100.0
d1fuoa_456 Fumarase {Escherichia coli [TaxId: 562]} 100.0
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Adenylosuccinate lyase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=3.1e-68  Score=548.07  Aligned_cols=326  Identities=23%  Similarity=0.255  Sum_probs=262.9

Q ss_pred             cCCCCCccCCCCccchHHhcccchhhHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHccCCcccHHhHHHHHh
Q 013159           83 ALSPLDGRYWSKVKDLAPYMSEYGLIYFRVLVEIKWLLKLSKIPEVTEVPSFSEEAKSYLQGLIDGFNMDDALEVKNIER  162 (448)
Q Consensus        83 ~~sp~dgry~~~~~el~~ifSe~~~i~~~l~VE~a~a~ala~~~~~giIp~~~a~a~~~i~~~~~~~~~~d~~~l~~~e~  162 (448)
                      ++||||+||++  ++|+++|||++++++|++||.||+++|+   ++|+||+..+++|   ..  ..+   |.++++++++
T Consensus         1 ~~sP~d~ry~~--~~~~~ifs~~~~~~~~l~ve~a~a~a~~---e~G~ip~~~a~~i---~~--~~~---d~~~i~~~e~   67 (402)
T d1dofa_           1 HVSPFDWRYGS--EEIRRLFTNEAIINAYLEVERALVCALE---ELGVAERGCCEKV---NK--ASV---SADEVYRLER   67 (402)
T ss_dssp             CCCGGGTTSSC--HHHHTTSSHHHHHHHHHHHHHHHHHHHH---HTTSSCTTHHHHH---HH--CCC---CTTTC-----
T ss_pred             CcCCCccccCC--HHHHHHcChHHHHHHHHHHHHHHHHHHH---HcCCCCHHHHHHH---HH--hcc---CHHHHHHHHH
Confidence            48999999984  7999999999999999999999999999   8999998777665   32  123   5677888999


Q ss_pred             hhCCcHhHHHHHHHHHhccCcchhhccCccccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccceee
Q 013159          163 VTNHDVKAVEYFLKQKCQSQPEIAKVLEFFHFACTSEDINNLAHALMLKEAINKVMFPVMDKLIKALCEIAKDNANISML  242 (448)
Q Consensus       163 ~t~hDv~a~e~~L~~~~g~~~~l~~~~~~vH~G~TsnDi~dTa~~L~lr~al~~~l~~~L~~l~~aL~~lA~~~~dt~m~  242 (448)
                      .++|||+++|++|++++|        ++|||+|+|||||+||+++|++|+++.. +.+.+..++++|.++|++|++|+|+
T Consensus        68 ~~~hdv~a~~~~l~~~~~--------~~~vH~G~TsnDi~~ta~~l~~r~~~~~-l~~~l~~l~~~L~~~a~~~~~t~m~  138 (402)
T d1dofa_          68 ETGHDILSLVLLLEQKSG--------CRYVHYGATSNDIIDTAWALLIRRALAA-VKEKARAVGDQLASMARKYKTLEMV  138 (402)
T ss_dssp             ---CHHHHHHHHHHHHHC--------CSCTTTTCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             HhCCCchHHHHHHhhhhH--------HHHhhccCchHHhhhhHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHhhcccchh
Confidence            999999999999999874        5799999999999999999999999994 9999999999999999999999999


Q ss_pred             ccccCCCCcccchhhHHHHHHHHHHHHHHHHHHhH--hhhcccccccccccccccCCCCChhhhHHHHHHHcCCCCCCCC
Q 013159          243 SRTHGQPASPTTLGKEISVFAIRLGRERQEISQVE--IMGKFAGAVGNYNAHLSAYPDVNWPQITEDFVKSLGLSFNPYV  320 (448)
Q Consensus       243 gRTH~Q~A~PtTfG~~la~~~~~L~r~~~rL~~~~--~lg~~gGAvGT~~a~~~~~p~~d~~~v~~~la~~LGL~~~~~~  320 (448)
                      ||||+|||+|||||+|+++|+++|.|+++||....  ..+++|||+|++++++..     ..++.++++..||+..++..
T Consensus       139 grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~~~~gGa~g~~~~~~~~-----~~~~~~~l~~~lgl~~~~~~  213 (402)
T d1dofa_         139 GRTHGQWAEPITLGFKFANYYYELYIACRQLALAEEFIRAKIGGAVGTMASWGEL-----GLEVRRRVAERLGLPHHVIT  213 (402)
T ss_dssp             EEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCBCCCCTTSSCGGGGGG-----HHHHHHHHHHHTTCCBCSSC
T ss_pred             hHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccch-----hhHHHHHHHHHhcccccchh
Confidence            99999999999999999999999999999998765  567789999998876432     24577889999999998887


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhh--ccceeeecCCCCcccCCCCCCcCchHHHHhhhhhhhhhHHHhh
Q 013159          321 TQIETHDYMAKLFYAFVRFNNILIDFDRDVWGYIS--LAYFKQVTKAGEIGSSTMPHKVNPIDFENSEGNLGKANEDLSF  398 (448)
Q Consensus       321 ~qi~~rD~~ael~~~la~i~~~L~kia~Di~l~~s--~g~~~~~~~~~~~GSS~MPhKrNPv~~E~~~g~~~la~~v~g~  398 (448)
                      +|+.+||++++++++++.++++|+|||+|+++|++  +|++    +++++||||||||+||+.+|+++++   |+.+.|+
T Consensus       214 ~~~~~rd~~~e~~~~L~~~a~~L~kia~Di~~~s~~e~ge~----~e~~~GSS~MP~K~NP~~~E~i~~~---a~~~~g~  286 (402)
T d1dofa_         214 TQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEV----VEGGGGSSAMPHKANPTASERIVSL---ARYVRAL  286 (402)
T ss_dssp             SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSE----ESCC---------CCCHHHHHHHHH---HHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc----ccccCccccccCCCCchHHHHHhch---HHHHHHH
Confidence            89999999999999999999999999999999985  6655    3578999999999999999999874   5578786


Q ss_pred             hhhhc--cccccccccccchHH---HHHhHHH---HHHHHhhcccccccccc
Q 013159          399 LSMKL--PISRWQVRSNLTLLL---IFFNFDL---WLCLLRQVPWYLKFKSD  442 (448)
Q Consensus       399 la~~L--~~s~~qRDl~~~~~~---~~~~~~~---~~~ll~~~~~~~~~~~~  442 (448)
                      .+..+  ..+.+|||++++...   +.+.+..   ....+..++..++|++|
T Consensus       287 ~~~~~~~~~~~~erd~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~vn~e  338 (402)
T d1dofa_         287 THVAFENVALWHERDLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEE  338 (402)
T ss_dssp             HHHHHHTTCCCTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHH
T ss_pred             HHHHHHhhcccccccchhhhhhhhccchhHHHHHHHHHHHHHHHccCEECHH
Confidence            54433  357899999987643   2333333   44556667777777765
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure